Query 048834
Match_columns 1108
No_of_seqs 431 out of 5128
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 13:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-70 5.2E-75 653.4 36.4 724 7-986 5-801 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.5E-53 2E-57 534.6 40.4 628 170-1064 190-906 (1153)
3 PLN03210 Resistant to P. syrin 100.0 1.4E-34 3.1E-39 368.5 42.2 746 220-1063 14-881 (1153)
4 PF00931 NB-ARC: NB-ARC domain 100.0 3.7E-34 8E-39 312.9 12.8 283 170-678 2-285 (287)
5 KOG4658 Apoptotic ATPase [Sign 100.0 3.6E-32 7.8E-37 326.0 29.7 621 366-1061 161-856 (889)
6 PLN00113 leucine-rich repeat r 99.9 1.6E-23 3.4E-28 269.1 14.7 290 761-1062 164-486 (968)
7 PLN00113 leucine-rich repeat r 99.9 8E-23 1.7E-27 262.5 16.2 337 760-1108 211-557 (968)
8 KOG0444 Cytoskeletal regulator 99.9 3.1E-24 6.6E-29 229.8 -5.8 273 760-1065 102-376 (1255)
9 KOG0444 Cytoskeletal regulator 99.8 2.1E-21 4.6E-26 208.2 -5.6 287 763-1062 34-350 (1255)
10 KOG0472 Leucine-rich repeat pr 99.7 4.3E-20 9.4E-25 188.9 -7.7 330 763-1108 93-515 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 4.5E-20 9.7E-25 188.8 -8.0 92 971-1064 427-541 (565)
12 KOG4194 Membrane glycoprotein 99.7 2.6E-17 5.7E-22 176.4 3.2 293 763-1062 80-403 (873)
13 KOG0618 Serine/threonine phosp 99.6 2.1E-17 4.6E-22 187.2 -0.1 316 729-1063 47-488 (1081)
14 KOG4194 Membrane glycoprotein 99.6 2.3E-16 4.9E-21 169.3 5.2 292 763-1063 54-353 (873)
15 KOG0618 Serine/threonine phosp 99.5 7.4E-16 1.6E-20 174.9 -0.3 329 763-1106 47-460 (1081)
16 PRK15387 E3 ubiquitin-protein 99.5 5.3E-14 1.1E-18 166.1 13.2 95 955-1062 362-456 (788)
17 KOG0617 Ras suppressor protein 99.5 1E-15 2.2E-20 138.5 -3.6 162 758-923 30-191 (264)
18 PRK15370 E3 ubiquitin-protein 99.5 7.3E-14 1.6E-18 166.4 8.6 244 763-1063 180-427 (754)
19 PF00931 NB-ARC: NB-ARC domain 99.4 3E-13 6.5E-18 147.8 11.2 168 368-539 1-170 (287)
20 PRK15387 E3 ubiquitin-protein 99.4 6.6E-13 1.4E-17 157.0 10.8 241 763-1047 224-465 (788)
21 PRK15370 E3 ubiquitin-protein 99.4 5.7E-13 1.2E-17 158.8 6.8 140 762-919 200-339 (754)
22 KOG0617 Ras suppressor protein 99.3 6.9E-14 1.5E-18 126.7 -3.7 138 762-905 57-196 (264)
23 cd00116 LRR_RI Leucine-rich re 99.2 9.5E-13 2.1E-17 146.8 -2.5 80 763-842 25-120 (319)
24 cd00116 LRR_RI Leucine-rich re 99.1 8E-12 1.7E-16 139.4 -1.2 262 777-1062 16-318 (319)
25 KOG4237 Extracellular matrix p 99.1 2.7E-12 5.8E-17 132.5 -7.3 273 763-1041 69-359 (498)
26 KOG4341 F-box protein containi 98.9 6E-11 1.3E-15 123.9 -2.4 296 763-1089 140-457 (483)
27 KOG4237 Extracellular matrix p 98.8 1.4E-10 3.1E-15 119.9 -4.9 278 769-1062 54-357 (498)
28 PF14580 LRR_9: Leucine-rich r 98.8 7.5E-09 1.6E-13 100.2 5.2 106 756-864 14-121 (175)
29 KOG3207 Beta-tubulin folding c 98.8 2.5E-09 5.4E-14 112.6 1.7 232 779-1062 116-365 (505)
30 PF05729 NACHT: NACHT domain 98.7 3.2E-08 7E-13 98.2 6.3 141 188-336 1-160 (166)
31 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.3E-14 109.2 -5.4 181 808-1040 186-375 (419)
32 cd01128 rho_factor Transcripti 98.6 9.9E-08 2.1E-12 98.8 7.8 91 188-280 17-115 (249)
33 KOG3207 Beta-tubulin folding c 98.5 1.1E-08 2.3E-13 108.0 -1.1 107 759-866 119-232 (505)
34 KOG0532 Leucine-rich repeat (L 98.5 1.3E-08 2.8E-13 110.7 -1.7 153 763-923 100-252 (722)
35 PRK09376 rho transcription ter 98.5 1.5E-07 3.3E-12 100.8 5.9 91 190-281 172-269 (416)
36 KOG1259 Nischarin, modulator o 98.5 3.8E-08 8.3E-13 98.2 1.1 130 876-1015 280-410 (490)
37 KOG0532 Leucine-rich repeat (L 98.5 6E-09 1.3E-13 113.2 -4.9 145 763-915 77-221 (722)
38 KOG1909 Ran GTPase-activating 98.4 2.9E-08 6.3E-13 102.0 -1.6 235 759-1015 28-309 (382)
39 KOG2120 SCF ubiquitin ligase, 98.4 9.9E-09 2.2E-13 102.4 -4.9 61 955-1015 313-374 (419)
40 KOG1909 Ran GTPase-activating 98.4 5.7E-08 1.2E-12 99.9 -0.2 93 778-870 24-134 (382)
41 COG4886 Leucine-rich repeat (L 98.4 2.8E-07 6.1E-12 105.8 4.6 154 760-919 115-269 (394)
42 PRK00411 cdc6 cell division co 98.3 3.1E-06 6.6E-11 97.1 10.7 138 170-310 36-187 (394)
43 TIGR00767 rho transcription te 98.3 1.8E-06 4E-11 93.3 7.9 92 188-280 169-267 (415)
44 PF14580 LRR_9: Leucine-rich r 98.3 6.1E-07 1.3E-11 87.0 3.8 107 760-867 41-151 (175)
45 PRK06893 DNA replication initi 98.2 4.9E-07 1.1E-11 93.9 3.0 122 188-341 40-176 (229)
46 COG4886 Leucine-rich repeat (L 98.2 1.1E-06 2.4E-11 100.9 6.0 194 765-993 97-291 (394)
47 PF13173 AAA_14: AAA domain 98.2 1.5E-06 3.3E-11 81.2 5.4 102 188-311 3-104 (128)
48 KOG1259 Nischarin, modulator o 98.2 1.8E-07 4E-12 93.5 -1.0 123 763-890 286-409 (490)
49 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.7E-11 69.3 3.2 57 762-818 2-60 (61)
50 PF13401 AAA_22: AAA domain; P 98.1 2.6E-06 5.6E-11 80.5 5.3 112 188-305 5-125 (131)
51 PRK00411 cdc6 cell division co 98.1 7.7E-05 1.7E-09 85.5 17.4 207 362-570 29-256 (394)
52 cd00009 AAA The AAA+ (ATPases 98.1 2.7E-05 5.8E-10 75.5 10.7 119 171-307 5-131 (151)
53 PF13855 LRR_8: Leucine rich r 98.1 3.7E-06 8E-11 66.5 3.6 58 784-841 1-60 (61)
54 PLN03150 hypothetical protein; 98.0 9.2E-06 2E-10 97.5 8.3 84 763-846 420-506 (623)
55 TIGR03015 pepcterm_ATPase puta 98.0 2.4E-05 5.3E-10 84.4 10.7 99 187-288 43-145 (269)
56 TIGR02928 orc1/cdc6 family rep 98.0 3.1E-05 6.6E-10 87.8 11.2 109 170-280 21-141 (365)
57 TIGR02639 ClpA ATP-dependent C 98.0 0.0001 2.3E-09 90.4 15.8 48 362-409 453-507 (731)
58 KOG2982 Uncharacterized conser 97.9 2.2E-06 4.7E-11 86.1 0.1 210 784-1020 45-265 (418)
59 TIGR01243 CDC48 AAA family ATP 97.9 0.00097 2.1E-08 82.3 23.1 25 385-409 486-510 (733)
60 KOG3665 ZYG-1-like serine/thre 97.9 3.7E-06 8.1E-11 100.1 1.5 154 759-914 120-284 (699)
61 KOG4341 F-box protein containi 97.9 5.9E-07 1.3E-11 94.6 -4.7 264 784-1071 138-421 (483)
62 TIGR02903 spore_lon_C ATP-depe 97.9 9.7E-05 2.1E-09 87.9 12.6 151 186-338 174-365 (615)
63 TIGR03015 pepcterm_ATPase puta 97.8 0.0013 2.9E-08 70.8 19.9 182 386-573 43-242 (269)
64 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 4E-10 56.9 3.5 35 786-820 3-37 (44)
65 TIGR02928 orc1/cdc6 family rep 97.8 0.00069 1.5E-08 76.8 18.0 201 362-564 14-241 (365)
66 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.9E-10 57.0 3.2 41 761-801 1-41 (44)
67 PLN03150 hypothetical protein; 97.8 2.4E-05 5.1E-10 94.1 5.3 87 955-1042 442-529 (623)
68 PRK15386 type III secretion pr 97.7 0.00015 3.3E-09 79.3 10.4 161 875-1064 47-213 (426)
69 KOG0531 Protein phosphatase 1, 97.7 5.2E-06 1.1E-10 95.2 -0.9 79 763-842 74-152 (414)
70 PRK13342 recombination factor 97.7 5.4E-05 1.2E-09 86.4 6.4 122 186-338 35-163 (413)
71 COG2256 MGS1 ATPase related to 97.6 0.00011 2.3E-09 78.2 7.3 124 185-337 46-174 (436)
72 PF05729 NACHT: NACHT domain 97.6 0.00057 1.2E-08 67.5 12.3 146 387-539 1-163 (166)
73 PF01637 Arch_ATPase: Archaeal 97.6 6.3E-05 1.4E-09 79.4 5.6 165 170-338 5-203 (234)
74 PF13191 AAA_16: AAA ATPase do 97.6 7.3E-05 1.6E-09 75.5 5.5 45 170-216 6-51 (185)
75 PRK15386 type III secretion pr 97.6 8.1E-05 1.8E-09 81.3 6.0 134 759-915 50-187 (426)
76 KOG0531 Protein phosphatase 1, 97.6 1.4E-05 3E-10 91.7 -0.2 244 781-1042 69-319 (414)
77 PTZ00202 tuzin; Provisional 97.5 0.0014 3.1E-08 71.2 14.1 96 171-274 269-367 (550)
78 PRK05564 DNA polymerase III su 97.5 0.00081 1.8E-08 73.9 12.0 118 171-307 11-134 (313)
79 PF01637 Arch_ATPase: Archaeal 97.5 0.0013 2.8E-08 69.4 12.8 195 365-568 1-233 (234)
80 PRK04841 transcriptional regul 97.4 0.0069 1.5E-07 78.2 21.7 197 362-576 13-232 (903)
81 KOG2982 Uncharacterized conser 97.4 7.3E-05 1.6E-09 75.4 2.6 80 760-842 70-158 (418)
82 KOG2543 Origin recognition com 97.4 0.00063 1.4E-08 71.8 9.0 109 170-283 12-130 (438)
83 KOG2028 ATPase related to the 97.4 0.00048 1E-08 71.6 7.5 95 185-303 160-256 (554)
84 PRK08118 topology modulation p 97.4 6.8E-05 1.5E-09 73.3 1.4 34 189-222 3-37 (167)
85 PRK04841 transcriptional regul 97.3 0.00067 1.5E-08 87.5 10.8 156 175-337 21-197 (903)
86 PRK08116 hypothetical protein; 97.3 0.0005 1.1E-08 72.9 7.8 100 189-305 116-220 (268)
87 PRK11331 5-methylcytosine-spec 97.3 0.0013 2.7E-08 73.1 10.8 103 170-281 181-285 (459)
88 TIGR01242 26Sp45 26S proteasom 97.3 0.00035 7.6E-09 78.6 6.5 132 187-340 156-307 (364)
89 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.00029 6.3E-09 73.7 5.5 104 172-306 25-133 (226)
90 PRK09087 hypothetical protein; 97.3 0.00023 4.9E-09 73.4 4.4 111 187-339 44-166 (226)
91 PRK11034 clpA ATP-dependent Cl 97.3 0.0014 3E-08 79.4 11.4 48 362-409 457-511 (758)
92 TIGR00635 ruvB Holliday juncti 97.2 0.00037 8E-09 76.7 5.7 155 171-339 11-172 (305)
93 COG5238 RNA1 Ran GTPase-activa 97.2 9.2E-05 2E-09 73.7 0.7 230 762-1015 31-314 (388)
94 PRK08727 hypothetical protein; 97.2 0.00026 5.6E-09 73.8 3.9 36 188-225 42-77 (233)
95 KOG1859 Leucine-rich repeat pr 97.2 2E-05 4.4E-10 88.8 -4.5 104 760-867 186-290 (1096)
96 PTZ00112 origin recognition co 97.2 0.0009 2E-08 78.7 8.4 131 170-301 761-905 (1164)
97 PRK04195 replication factor C 97.2 0.0013 2.9E-08 76.8 10.0 110 170-304 20-138 (482)
98 COG2256 MGS1 ATPase related to 97.2 0.0036 7.8E-08 67.0 12.0 124 384-538 46-175 (436)
99 COG1474 CDC6 Cdc6-related prot 97.2 0.0024 5.1E-08 70.7 11.0 129 170-304 23-162 (366)
100 PRK07003 DNA polymerase III su 97.2 0.002 4.3E-08 75.6 10.5 40 267-306 118-159 (830)
101 PRK00080 ruvB Holliday junctio 97.1 0.00075 1.6E-08 74.7 6.7 40 171-210 32-74 (328)
102 KOG1859 Leucine-rich repeat pr 97.1 1.6E-05 3.5E-10 89.5 -6.4 124 763-892 166-291 (1096)
103 PF00004 AAA: ATPase family as 97.1 0.00094 2E-08 63.0 6.3 21 190-210 1-21 (132)
104 PF04665 Pox_A32: Poxvirus A32 97.1 0.00081 1.7E-08 68.6 6.1 34 189-224 15-48 (241)
105 TIGR02655 circ_KaiC circadian 97.1 0.0093 2E-07 69.6 15.3 50 175-227 9-60 (484)
106 KOG1947 Leucine rich repeat pr 97.1 6.4E-05 1.4E-09 89.4 -2.7 242 782-1069 186-445 (482)
107 PTZ00112 origin recognition co 97.1 0.016 3.6E-07 68.7 16.7 179 361-540 753-950 (1164)
108 PRK08084 DNA replication initi 97.0 0.00045 9.8E-09 72.1 3.4 38 187-226 45-82 (235)
109 PLN03025 replication factor C 97.0 0.003 6.5E-08 69.6 9.7 112 174-305 23-138 (319)
110 smart00382 AAA ATPases associa 97.0 0.0014 3.1E-08 62.7 6.5 23 188-210 3-25 (148)
111 COG5238 RNA1 Ran GTPase-activa 97.0 0.00031 6.7E-09 70.1 1.4 253 778-1042 24-317 (388)
112 PF13173 AAA_14: AAA domain 97.0 0.0058 1.3E-07 57.0 10.0 119 387-530 3-126 (128)
113 PRK13342 recombination factor 96.9 0.012 2.5E-07 67.4 14.4 170 364-566 13-193 (413)
114 cd01128 rho_factor Transcripti 96.9 0.0037 8E-08 65.1 9.0 92 387-479 17-114 (249)
115 PHA02544 44 clamp loader, smal 96.9 0.0048 1.1E-07 68.2 10.5 110 171-305 28-140 (316)
116 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0031 6.6E-08 65.8 8.0 89 190-280 72-175 (274)
117 TIGR02881 spore_V_K stage V sp 96.9 0.0023 5.1E-08 68.2 7.5 24 186-209 41-64 (261)
118 TIGR00635 ruvB Holliday juncti 96.9 0.0029 6.3E-08 69.6 8.3 176 364-571 5-203 (305)
119 PRK06645 DNA polymerase III su 96.9 0.0034 7.3E-08 72.3 9.0 70 266-337 126-198 (507)
120 PRK13341 recombination factor 96.8 0.0025 5.5E-08 76.8 8.1 120 186-337 51-179 (725)
121 PRK14957 DNA polymerase III su 96.8 0.0071 1.5E-07 70.2 11.4 39 266-304 117-157 (546)
122 PRK14963 DNA polymerase III su 96.8 0.0011 2.5E-08 76.6 4.9 129 173-304 23-154 (504)
123 PRK14960 DNA polymerase III su 96.8 0.0067 1.4E-07 70.6 10.9 41 266-306 116-158 (702)
124 PRK06893 DNA replication initi 96.8 0.02 4.2E-07 59.6 13.5 122 387-540 40-175 (229)
125 COG2909 MalT ATP-dependent tra 96.8 0.032 6.9E-07 65.8 15.8 131 176-310 27-174 (894)
126 KOG4579 Leucine-rich repeat (L 96.7 0.00018 4E-09 64.1 -1.8 97 763-862 29-129 (177)
127 PRK03992 proteasome-activating 96.7 0.0022 4.7E-08 72.4 6.2 25 186-210 164-188 (389)
128 PRK09183 transposase/IS protei 96.7 0.0034 7.4E-08 66.3 7.1 22 188-209 103-124 (259)
129 COG0488 Uup ATPase components 96.7 0.018 3.9E-07 66.8 13.4 51 259-314 162-218 (530)
130 KOG4579 Leucine-rich repeat (L 96.7 0.00033 7.1E-09 62.5 -0.6 81 761-841 53-134 (177)
131 PRK08181 transposase; Validate 96.7 0.0026 5.7E-08 67.0 6.0 96 189-305 108-208 (269)
132 PRK12402 replication factor C 96.7 0.0068 1.5E-07 67.9 9.8 37 171-209 22-58 (337)
133 PRK00080 ruvB Holliday junctio 96.7 0.0077 1.7E-07 66.7 10.0 177 363-571 25-224 (328)
134 KOG3665 ZYG-1-like serine/thre 96.7 0.00069 1.5E-08 81.1 1.8 129 784-916 122-261 (699)
135 TIGR03689 pup_AAA proteasome A 96.7 0.0036 7.8E-08 71.7 7.3 138 187-338 216-377 (512)
136 PRK12608 transcription termina 96.7 0.0055 1.2E-07 66.6 8.2 88 190-279 136-231 (380)
137 PF13401 AAA_22: AAA domain; P 96.6 0.0043 9.4E-08 58.3 6.4 113 386-505 4-123 (131)
138 PRK14949 DNA polymerase III su 96.6 0.01 2.2E-07 71.4 10.7 64 266-331 117-183 (944)
139 PF00308 Bac_DnaA: Bacterial d 96.6 0.003 6.6E-08 64.9 5.7 131 186-339 33-179 (219)
140 CHL00181 cbbX CbbX; Provisiona 96.6 0.0061 1.3E-07 65.4 8.1 102 189-308 61-173 (287)
141 PRK14961 DNA polymerase III su 96.6 0.013 2.8E-07 65.7 11.0 39 267-305 118-158 (363)
142 PRK14949 DNA polymerase III su 96.6 0.06 1.3E-06 65.0 16.6 180 363-565 16-216 (944)
143 PRK06526 transposase; Provisio 96.5 0.0038 8.3E-08 65.4 6.0 21 189-209 100-120 (254)
144 PRK14962 DNA polymerase III su 96.5 0.013 2.8E-07 67.3 10.7 22 188-209 37-58 (472)
145 PRK12323 DNA polymerase III su 96.5 0.018 4E-07 66.9 11.6 44 266-309 122-168 (700)
146 PRK12377 putative replication 96.5 0.0057 1.2E-07 63.6 7.0 72 188-278 102-173 (248)
147 PRK10536 hypothetical protein; 96.5 0.026 5.7E-07 58.0 11.5 41 263-304 168-211 (262)
148 PF05496 RuvB_N: Holliday junc 96.5 0.043 9.4E-07 54.9 12.5 172 362-566 23-218 (233)
149 PF13191 AAA_16: AAA ATPase do 96.5 0.014 3.1E-07 58.6 9.8 45 365-409 2-47 (185)
150 KOG0736 Peroxisome assembly fa 96.5 0.017 3.8E-07 66.7 11.0 47 187-235 431-480 (953)
151 TIGR02880 cbbX_cfxQ probable R 96.5 0.0066 1.4E-07 65.2 7.5 99 190-306 61-170 (284)
152 PRK05642 DNA replication initi 96.4 0.003 6.5E-08 65.8 4.4 90 188-306 46-140 (234)
153 KOG2543 Origin recognition com 96.4 0.68 1.5E-05 49.8 21.3 165 363-539 6-193 (438)
154 PF13207 AAA_17: AAA domain; P 96.4 0.0019 4.2E-08 59.7 2.6 21 189-209 1-21 (121)
155 PRK09302 circadian clock prote 96.4 0.031 6.7E-07 66.1 13.1 61 175-238 19-79 (509)
156 PRK06921 hypothetical protein; 96.4 0.0075 1.6E-07 63.9 7.1 37 187-225 117-154 (266)
157 PRK14956 DNA polymerase III su 96.4 0.019 4.2E-07 64.8 10.4 37 172-209 26-62 (484)
158 KOG1644 U2-associated snRNP A' 96.3 0.0063 1.4E-07 58.6 5.4 124 763-889 21-149 (233)
159 PRK08691 DNA polymerase III su 96.3 0.024 5.2E-07 66.8 11.3 38 171-209 23-60 (709)
160 TIGR00678 holB DNA polymerase 96.3 0.024 5.2E-07 57.1 10.1 40 267-306 95-136 (188)
161 PRK07261 topology modulation p 96.3 0.0051 1.1E-07 60.6 5.0 21 189-209 2-22 (171)
162 PRK14956 DNA polymerase III su 96.3 0.051 1.1E-06 61.6 13.3 192 364-564 19-217 (484)
163 KOG1947 Leucine rich repeat pr 96.3 0.00064 1.4E-08 80.8 -1.9 234 760-1042 187-441 (482)
164 PRK14957 DNA polymerase III su 96.3 0.16 3.4E-06 59.3 17.5 181 364-569 17-221 (546)
165 PTZ00454 26S protease regulato 96.3 0.0081 1.8E-07 67.4 6.9 25 186-210 178-202 (398)
166 PRK14958 DNA polymerase III su 96.3 0.028 6.1E-07 65.4 11.5 40 266-305 117-158 (509)
167 cd01131 PilT Pilus retraction 96.3 0.0098 2.1E-07 60.2 6.9 110 189-310 3-113 (198)
168 PRK06620 hypothetical protein; 96.2 0.005 1.1E-07 63.0 4.6 23 188-210 45-67 (214)
169 PRK03003 GTP-binding protein D 96.2 0.064 1.4E-06 62.6 14.3 44 366-409 185-234 (472)
170 PRK14969 DNA polymerase III su 96.2 0.038 8.3E-07 64.8 12.4 40 266-305 117-158 (527)
171 TIGR00362 DnaA chromosomal rep 96.2 0.012 2.6E-07 67.4 8.1 98 187-304 136-240 (405)
172 KOG0730 AAA+-type ATPase [Post 96.2 0.023 5.1E-07 64.8 9.9 26 384-409 466-491 (693)
173 PF07728 AAA_5: AAA domain (dy 96.2 0.0032 7E-08 59.8 2.9 85 190-290 2-89 (139)
174 PRK00440 rfc replication facto 96.2 0.035 7.6E-07 61.6 11.6 113 171-304 24-140 (319)
175 PRK07994 DNA polymerase III su 96.2 0.022 4.8E-07 67.3 10.0 40 266-305 117-158 (647)
176 PRK14951 DNA polymerase III su 96.1 0.034 7.4E-07 65.6 11.4 38 267-304 123-162 (618)
177 PRK07940 DNA polymerase III su 96.1 0.031 6.7E-07 62.7 10.6 40 267-306 116-157 (394)
178 PRK09518 bifunctional cytidyla 96.1 0.11 2.5E-06 63.8 16.5 45 366-410 422-474 (712)
179 PRK05564 DNA polymerase III su 96.1 0.17 3.8E-06 55.6 16.3 176 364-566 5-187 (313)
180 cd01120 RecA-like_NTPases RecA 96.1 0.017 3.6E-07 56.8 7.6 40 189-230 1-40 (165)
181 PRK14964 DNA polymerase III su 96.1 0.043 9.3E-07 62.9 11.7 37 267-303 115-153 (491)
182 PRK07003 DNA polymerase III su 96.1 0.14 2.9E-06 60.9 15.8 180 364-568 17-220 (830)
183 PRK05541 adenylylsulfate kinas 96.1 0.033 7.1E-07 55.4 9.6 36 186-223 6-41 (176)
184 PRK14963 DNA polymerase III su 96.1 0.032 7E-07 64.7 10.7 187 364-564 15-212 (504)
185 PRK12323 DNA polymerase III su 96.1 0.12 2.6E-06 60.4 14.9 177 364-565 17-221 (700)
186 cd01393 recA_like RecA is a b 96.0 0.021 4.6E-07 59.6 8.4 58 177-236 9-72 (226)
187 PRK12422 chromosomal replicati 96.0 0.0094 2E-07 68.1 6.1 98 188-305 142-244 (445)
188 PRK07667 uridine kinase; Provi 96.0 0.0061 1.3E-07 61.5 4.0 37 173-209 3-39 (193)
189 PRK14961 DNA polymerase III su 96.0 0.28 6.1E-06 55.1 17.6 177 363-564 16-215 (363)
190 PF02562 PhoH: PhoH-like prote 96.0 0.0072 1.6E-07 60.3 4.3 118 186-306 18-156 (205)
191 PRK09361 radB DNA repair and r 96.0 0.019 4.2E-07 59.8 7.8 59 174-235 10-68 (225)
192 KOG1644 U2-associated snRNP A' 96.0 0.011 2.3E-07 57.1 5.2 112 955-1070 42-159 (233)
193 PRK14087 dnaA chromosomal repl 96.0 0.011 2.4E-07 67.8 6.4 100 187-304 141-247 (450)
194 COG1474 CDC6 Cdc6-related prot 96.0 0.028 6.1E-07 62.3 9.2 168 365-538 19-202 (366)
195 PRK14960 DNA polymerase III su 96.0 0.23 5.1E-06 58.2 16.7 178 363-563 15-213 (702)
196 TIGR00602 rad24 checkpoint pro 95.9 0.018 3.9E-07 68.1 7.9 40 171-210 91-133 (637)
197 cd00009 AAA The AAA+ (ATPases 95.9 0.11 2.4E-06 49.7 12.5 41 367-409 2-42 (151)
198 PF05496 RuvB_N: Holliday junc 95.9 0.0048 1E-07 61.5 2.6 33 183-217 46-78 (233)
199 PRK06645 DNA polymerase III su 95.9 0.28 6.1E-06 56.8 17.3 177 364-563 22-223 (507)
200 PRK09376 rho transcription ter 95.9 0.017 3.6E-07 63.0 6.9 90 387-479 170-267 (416)
201 PF13671 AAA_33: AAA domain; P 95.9 0.023 4.9E-07 54.3 7.3 109 189-311 1-113 (143)
202 PRK14962 DNA polymerase III su 95.9 0.2 4.4E-06 57.8 16.0 183 363-571 14-221 (472)
203 PRK14088 dnaA chromosomal repl 95.9 0.014 2.9E-07 67.1 6.5 98 188-304 131-235 (440)
204 PTZ00202 tuzin; Provisional 95.9 0.11 2.4E-06 57.1 12.7 170 357-537 256-432 (550)
205 PRK00149 dnaA chromosomal repl 95.9 0.021 4.6E-07 66.2 8.1 99 187-305 148-253 (450)
206 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.21 4.5E-06 52.1 14.9 166 369-569 23-201 (226)
207 PRK14955 DNA polymerase III su 95.8 0.045 9.8E-07 62.2 10.5 37 267-303 126-164 (397)
208 TIGR02237 recomb_radB DNA repa 95.8 0.023 5.1E-07 58.4 7.5 49 185-236 10-58 (209)
209 cd01123 Rad51_DMC1_radA Rad51_ 95.8 0.027 5.8E-07 59.2 8.0 58 179-236 11-72 (235)
210 KOG2028 ATPase related to the 95.8 0.047 1E-06 57.4 9.1 129 385-538 161-293 (554)
211 PRK07940 DNA polymerase III su 95.8 0.38 8.3E-06 54.1 17.1 174 364-566 6-210 (394)
212 cd03247 ABCC_cytochrome_bd The 95.8 0.026 5.5E-07 56.3 7.2 23 188-210 29-51 (178)
213 COG1618 Predicted nucleotide k 95.7 0.0071 1.5E-07 56.0 2.7 33 190-224 8-41 (179)
214 PRK13341 recombination factor 95.7 0.11 2.3E-06 63.1 13.4 142 364-539 29-181 (725)
215 COG1373 Predicted ATPase (AAA+ 95.7 0.046 1E-06 61.8 9.8 120 189-334 39-162 (398)
216 KOG1532 GTPase XAB1, interacts 95.7 0.033 7.1E-07 56.2 7.4 105 186-300 18-140 (366)
217 PRK07952 DNA replication prote 95.7 0.036 7.9E-07 57.5 8.0 100 187-304 99-203 (244)
218 COG1484 DnaC DNA replication p 95.7 0.019 4E-07 60.4 6.0 73 188-279 106-178 (254)
219 CHL00176 ftsH cell division pr 95.6 0.049 1.1E-06 65.0 10.0 71 187-279 216-286 (638)
220 PRK06835 DNA replication prote 95.6 0.027 5.8E-07 61.5 7.2 37 188-226 184-220 (329)
221 PRK07994 DNA polymerase III su 95.6 0.27 6E-06 58.4 15.9 189 363-564 16-215 (647)
222 PRK14970 DNA polymerase III su 95.6 0.073 1.6E-06 60.2 11.0 38 171-209 24-61 (367)
223 KOG2739 Leucine-rich acidic nu 95.6 0.0052 1.1E-07 62.0 1.5 106 955-1064 43-156 (260)
224 PTZ00301 uridine kinase; Provi 95.6 0.0097 2.1E-07 60.3 3.5 29 188-218 4-32 (210)
225 PRK06696 uridine kinase; Valid 95.6 0.012 2.7E-07 60.9 4.2 38 172-209 6-44 (223)
226 PF04665 Pox_A32: Poxvirus A32 95.5 0.34 7.3E-06 49.8 14.3 36 386-423 13-48 (241)
227 TIGR02397 dnaX_nterm DNA polym 95.5 0.093 2E-06 59.2 11.6 37 171-208 21-57 (355)
228 COG0572 Udk Uridine kinase [Nu 95.5 0.011 2.4E-07 58.9 3.5 24 185-208 6-29 (218)
229 PRK13695 putative NTPase; Prov 95.5 0.0064 1.4E-07 60.4 1.9 21 190-210 3-23 (174)
230 cd03238 ABC_UvrA The excision 95.5 0.036 7.7E-07 54.6 7.1 115 188-310 22-153 (176)
231 PRK00440 rfc replication facto 95.5 0.4 8.6E-06 53.2 16.5 178 364-564 18-198 (319)
232 PRK05896 DNA polymerase III su 95.5 0.031 6.6E-07 65.1 7.4 36 172-208 24-59 (605)
233 TIGR03594 GTPase_EngA ribosome 95.5 0.07 1.5E-06 61.9 10.6 43 367-409 147-195 (429)
234 TIGR02640 gas_vesic_GvpN gas v 95.5 0.028 6E-07 59.9 6.6 42 190-236 24-65 (262)
235 PRK00093 GTP-binding protein D 95.5 0.18 3.9E-06 58.6 14.0 25 385-409 172-196 (435)
236 PRK04195 replication factor C 95.5 0.16 3.4E-06 59.5 13.4 172 363-562 14-195 (482)
237 PRK07764 DNA polymerase III su 95.5 0.086 1.9E-06 64.8 11.5 39 266-304 118-158 (824)
238 PRK14959 DNA polymerase III su 95.5 0.092 2E-06 61.7 11.1 40 266-305 117-158 (624)
239 PF01695 IstB_IS21: IstB-like 95.5 0.011 2.4E-07 58.4 3.2 72 188-279 48-119 (178)
240 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.095 2.1E-06 50.1 9.3 117 188-307 3-139 (159)
241 PLN03025 replication factor C 95.4 0.21 4.6E-06 55.0 13.5 176 364-561 14-192 (319)
242 PRK08939 primosomal protein Dn 95.4 0.021 4.6E-07 61.7 5.5 98 187-304 156-259 (306)
243 COG2909 MalT ATP-dependent tra 95.4 0.94 2E-05 54.0 18.9 198 362-574 18-238 (894)
244 TIGR01242 26Sp45 26S proteasom 95.4 0.21 4.5E-06 56.3 13.7 154 364-540 123-307 (364)
245 PF05621 TniB: Bacterial TniB 95.4 0.062 1.3E-06 56.5 8.6 89 187-279 61-156 (302)
246 PRK08903 DnaA regulatory inact 95.4 0.025 5.4E-07 59.0 5.8 25 186-210 41-65 (227)
247 PRK14955 DNA polymerase III su 95.4 0.22 4.8E-06 56.6 13.7 197 363-564 16-223 (397)
248 PRK14950 DNA polymerase III su 95.3 0.051 1.1E-06 65.0 8.9 38 267-304 119-158 (585)
249 PLN00020 ribulose bisphosphate 95.3 0.028 6E-07 60.5 5.8 26 185-210 146-171 (413)
250 PF00485 PRK: Phosphoribulokin 95.3 0.01 2.3E-07 60.0 2.6 20 189-208 1-20 (194)
251 PRK04296 thymidine kinase; Pro 95.3 0.015 3.3E-07 58.4 3.6 114 189-309 4-119 (190)
252 TIGR00767 rho transcription te 95.3 0.08 1.7E-06 58.2 9.2 92 387-479 169-266 (415)
253 CHL00095 clpC Clp protease ATP 95.3 0.037 8E-07 69.2 7.7 38 170-209 185-222 (821)
254 PTZ00361 26 proteosome regulat 95.3 0.047 1E-06 61.9 7.7 24 187-210 217-240 (438)
255 PRK07764 DNA polymerase III su 95.2 0.52 1.1E-05 58.2 17.1 177 364-563 16-215 (824)
256 PRK08972 fliI flagellum-specif 95.2 0.033 7.1E-07 62.2 6.3 89 188-280 163-264 (444)
257 PF13177 DNA_pol3_delta2: DNA 95.2 0.16 3.4E-06 49.5 10.4 101 188-307 20-143 (162)
258 PF00448 SRP54: SRP54-type pro 95.2 0.077 1.7E-06 53.3 8.5 21 188-208 2-22 (196)
259 cd01394 radB RadB. The archaea 95.2 0.046 9.9E-07 56.7 7.1 54 175-230 7-60 (218)
260 PRK08691 DNA polymerase III su 95.2 0.16 3.5E-06 60.1 12.1 179 363-564 16-215 (709)
261 cd02019 NK Nucleoside/nucleoti 95.2 0.013 2.7E-07 47.5 2.3 21 189-209 1-21 (69)
262 PRK09087 hypothetical protein; 95.2 0.54 1.2E-05 48.6 14.8 110 387-540 45-167 (226)
263 PF13238 AAA_18: AAA domain; P 95.2 0.012 2.6E-07 55.1 2.4 20 190-209 1-20 (129)
264 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.03 6.4E-07 57.5 5.3 122 188-311 31-204 (254)
265 PRK05896 DNA polymerase III su 95.2 0.22 4.7E-06 58.3 12.9 185 363-570 16-222 (605)
266 PRK14952 DNA polymerase III su 95.2 0.15 3.3E-06 60.1 11.8 38 171-209 20-57 (584)
267 PRK11889 flhF flagellar biosyn 95.2 0.18 3.9E-06 55.2 11.4 23 186-208 240-262 (436)
268 PF00560 LRR_1: Leucine Rich R 95.1 0.011 2.3E-07 35.2 1.2 16 786-801 2-17 (22)
269 PRK14964 DNA polymerase III su 95.1 0.73 1.6E-05 53.0 16.9 176 364-564 14-212 (491)
270 TIGR02639 ClpA ATP-dependent C 95.1 0.035 7.7E-07 68.4 6.9 90 187-292 484-579 (731)
271 KOG2227 Pre-initiation complex 95.1 0.072 1.6E-06 58.4 8.3 131 170-302 156-293 (529)
272 KOG0735 AAA+-type ATPase [Post 95.1 0.036 7.8E-07 63.5 6.2 71 188-278 432-504 (952)
273 COG3899 Predicted ATPase [Gene 95.1 0.05 1.1E-06 67.6 8.0 44 171-216 7-51 (849)
274 TIGR00678 holB DNA polymerase 95.1 0.68 1.5E-05 46.5 14.9 88 467-563 95-185 (188)
275 PRK14954 DNA polymerase III su 95.1 0.12 2.6E-06 61.4 10.7 37 266-303 126-164 (620)
276 PRK14086 dnaA chromosomal repl 95.1 0.05 1.1E-06 63.5 7.3 98 188-305 315-419 (617)
277 cd03222 ABC_RNaseL_inhibitor T 95.1 0.051 1.1E-06 53.5 6.5 23 188-210 26-48 (177)
278 PRK14954 DNA polymerase III su 95.1 0.59 1.3E-05 55.7 16.4 191 363-561 16-220 (620)
279 TIGR00763 lon ATP-dependent pr 95.0 0.25 5.5E-06 61.4 14.0 25 186-210 346-370 (775)
280 PRK12597 F0F1 ATP synthase sub 95.0 0.053 1.1E-06 61.4 7.3 90 190-280 146-249 (461)
281 PRK14951 DNA polymerase III su 95.0 0.49 1.1E-05 56.2 15.5 191 364-564 17-220 (618)
282 PRK12678 transcription termina 95.0 0.037 7.9E-07 62.9 5.9 90 190-280 419-515 (672)
283 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.077 1.7E-06 50.5 7.5 23 188-210 27-49 (144)
284 TIGR01241 FtsH_fam ATP-depende 95.0 0.16 3.5E-06 59.7 11.7 23 188-210 89-111 (495)
285 PRK08727 hypothetical protein; 95.0 0.51 1.1E-05 49.2 14.2 121 387-539 42-175 (233)
286 PRK05703 flhF flagellar biosyn 95.0 0.14 3E-06 58.3 10.7 22 187-208 221-242 (424)
287 PF00560 LRR_1: Leucine Rich R 95.0 0.0092 2E-07 35.5 0.7 22 808-829 1-22 (22)
288 PRK12402 replication factor C 95.0 0.97 2.1E-05 50.5 17.6 193 363-563 15-220 (337)
289 PRK09270 nucleoside triphospha 95.0 0.026 5.6E-07 58.9 4.4 36 173-209 20-55 (229)
290 PRK08149 ATP synthase SpaL; Va 94.9 0.083 1.8E-06 59.2 8.5 89 188-280 152-253 (428)
291 PRK05480 uridine/cytidine kina 94.9 0.017 3.7E-07 59.4 2.9 24 186-209 5-28 (209)
292 PRK08356 hypothetical protein; 94.9 0.14 3E-06 51.8 9.4 20 188-207 6-25 (195)
293 PF13604 AAA_30: AAA domain; P 94.9 0.041 9E-07 55.5 5.5 101 187-304 18-129 (196)
294 TIGR00235 udk uridine kinase. 94.9 0.017 3.7E-07 59.1 2.7 24 186-209 5-28 (207)
295 PRK08084 DNA replication initi 94.9 0.6 1.3E-05 48.7 14.3 121 387-539 46-180 (235)
296 KOG2123 Uncharacterized conser 94.9 0.0012 2.5E-08 66.5 -5.6 102 760-863 18-124 (388)
297 TIGR02858 spore_III_AA stage I 94.8 0.19 4.1E-06 53.2 10.4 117 186-310 110-233 (270)
298 PF08433 KTI12: Chromatin asso 94.8 0.033 7.1E-07 58.9 4.6 112 189-313 3-116 (270)
299 PRK04301 radA DNA repair and r 94.8 0.14 3.1E-06 56.2 9.9 63 179-242 94-160 (317)
300 COG2255 RuvB Holliday junction 94.8 0.015 3.3E-07 59.2 2.0 28 183-210 48-75 (332)
301 PRK07594 type III secretion sy 94.8 0.098 2.1E-06 58.8 8.6 89 188-280 156-257 (433)
302 TIGR02903 spore_lon_C ATP-depe 94.8 0.53 1.1E-05 56.6 15.3 44 364-409 155-198 (615)
303 cd03214 ABC_Iron-Siderophores_ 94.8 0.15 3.2E-06 50.9 9.1 119 188-310 26-162 (180)
304 PRK08903 DnaA regulatory inact 94.8 0.63 1.4E-05 48.5 14.2 43 367-409 23-65 (227)
305 PRK14959 DNA polymerase III su 94.8 0.95 2.1E-05 53.4 16.7 186 364-572 17-224 (624)
306 PTZ00185 ATPase alpha subunit; 94.8 0.11 2.4E-06 58.6 8.6 91 190-280 192-301 (574)
307 cd01135 V_A-ATPase_B V/A-type 94.7 0.091 2E-06 54.9 7.5 92 190-281 72-179 (276)
308 PRK08927 fliI flagellum-specif 94.7 0.093 2E-06 59.0 8.1 89 188-280 159-260 (442)
309 TIGR02238 recomb_DMC1 meiotic 94.7 0.14 3.1E-06 55.5 9.4 69 174-243 83-155 (313)
310 PRK08233 hypothetical protein; 94.7 0.019 4.1E-07 57.6 2.5 23 187-209 3-25 (182)
311 TIGR01359 UMP_CMP_kin_fam UMP- 94.7 0.086 1.9E-06 52.8 7.3 20 189-208 1-20 (183)
312 COG2884 FtsE Predicted ATPase 94.7 0.096 2.1E-06 50.3 6.8 55 259-313 146-204 (223)
313 PRK14088 dnaA chromosomal repl 94.7 1.2 2.6E-05 51.3 17.3 144 375-539 119-276 (440)
314 PRK08533 flagellar accessory p 94.7 0.15 3.2E-06 53.0 9.0 49 185-238 22-71 (230)
315 PRK14952 DNA polymerase III su 94.7 1.6 3.4E-05 51.8 18.4 185 364-571 14-222 (584)
316 cd03246 ABCC_Protease_Secretio 94.7 0.072 1.6E-06 52.7 6.5 23 188-210 29-51 (173)
317 COG4608 AppF ABC-type oligopep 94.6 0.11 2.4E-06 53.5 7.7 122 188-313 40-177 (268)
318 KOG0733 Nuclear AAA ATPase (VC 94.6 0.082 1.8E-06 59.7 7.3 71 187-279 223-293 (802)
319 cd02021 GntK Gluconate kinase 94.6 0.32 6.9E-06 46.8 10.8 22 189-210 1-22 (150)
320 cd03223 ABCD_peroxisomal_ALDP 94.6 0.11 2.5E-06 50.9 7.7 23 188-210 28-50 (166)
321 PF00006 ATP-synt_ab: ATP synt 94.6 0.08 1.7E-06 53.8 6.7 87 190-280 18-117 (215)
322 KOG2739 Leucine-rich acidic nu 94.6 0.016 3.5E-07 58.6 1.6 92 953-1045 63-160 (260)
323 COG1160 Predicted GTPases [Gen 94.6 0.23 5E-06 54.9 10.4 44 367-410 152-202 (444)
324 KOG2227 Pre-initiation complex 94.6 1.2 2.6E-05 49.3 15.6 208 361-573 148-376 (529)
325 PRK14958 DNA polymerase III su 94.6 0.72 1.6E-05 53.9 15.3 180 363-564 16-215 (509)
326 PRK05642 DNA replication initi 94.6 0.58 1.3E-05 48.8 13.2 122 386-538 45-178 (234)
327 PRK09111 DNA polymerase III su 94.5 0.22 4.8E-06 59.1 11.1 38 171-209 31-68 (598)
328 smart00763 AAA_PrkA PrkA AAA d 94.5 0.028 6.2E-07 60.9 3.3 41 170-210 57-101 (361)
329 cd01132 F1_ATPase_alpha F1 ATP 94.5 0.15 3.3E-06 53.3 8.5 96 190-289 72-183 (274)
330 PRK10787 DNA-binding ATP-depen 94.5 0.39 8.5E-06 59.2 13.5 41 169-209 327-371 (784)
331 PRK09280 F0F1 ATP synthase sub 94.5 0.083 1.8E-06 59.6 7.0 89 190-280 147-250 (463)
332 PRK10865 protein disaggregatio 94.5 0.084 1.8E-06 65.9 7.9 38 170-209 184-221 (857)
333 PF00308 Bac_DnaA: Bacterial d 94.4 1 2.2E-05 46.4 14.5 146 371-539 18-179 (219)
334 PRK09111 DNA polymerase III su 94.4 0.45 9.8E-06 56.5 13.3 188 363-565 24-229 (598)
335 PRK12724 flagellar biosynthesi 94.4 0.11 2.5E-06 57.6 7.7 22 187-208 223-244 (432)
336 PRK06002 fliI flagellum-specif 94.4 0.14 3.1E-06 57.6 8.5 90 188-280 166-266 (450)
337 cd03228 ABCC_MRP_Like The MRP 94.3 0.16 3.4E-06 50.2 8.0 23 188-210 29-51 (171)
338 PRK06762 hypothetical protein; 94.3 0.027 5.9E-07 55.4 2.5 22 188-209 3-24 (166)
339 KOG2123 Uncharacterized conser 94.3 0.0021 4.6E-08 64.6 -5.2 97 936-1034 22-123 (388)
340 PRK14953 DNA polymerase III su 94.3 0.38 8.2E-06 55.8 12.1 38 266-303 117-156 (486)
341 PRK06620 hypothetical protein; 94.3 0.64 1.4E-05 47.6 12.5 46 364-409 18-67 (214)
342 PRK14965 DNA polymerase III su 94.3 0.28 6.1E-06 58.4 11.4 38 171-209 23-60 (576)
343 COG3899 Predicted ATPase [Gene 94.3 0.79 1.7E-05 57.3 15.7 210 365-576 2-267 (849)
344 cd01121 Sms Sms (bacterial rad 94.3 0.089 1.9E-06 58.5 6.7 52 174-227 69-120 (372)
345 PRK07133 DNA polymerase III su 94.3 1.4 3.1E-05 52.9 17.0 177 364-563 19-213 (725)
346 COG1136 SalX ABC-type antimicr 94.3 0.08 1.7E-06 53.5 5.7 53 259-313 151-210 (226)
347 COG0468 RecA RecA/RadA recombi 94.3 0.19 4.1E-06 52.9 8.7 55 180-236 53-107 (279)
348 PF14516 AAA_35: AAA-like doma 94.2 11 0.00024 41.7 23.1 209 359-577 7-247 (331)
349 cd03216 ABC_Carb_Monos_I This 94.2 0.11 2.3E-06 50.9 6.5 114 188-310 27-146 (163)
350 PRK06547 hypothetical protein; 94.2 0.034 7.3E-07 54.5 2.9 25 185-209 13-37 (172)
351 cd02023 UMPK Uridine monophosp 94.2 0.027 5.8E-07 57.3 2.3 21 189-209 1-21 (198)
352 PRK09112 DNA polymerase III su 94.2 1.4 3.1E-05 48.8 15.8 197 360-569 20-240 (351)
353 COG1116 TauB ABC-type nitrate/ 94.1 0.19 4.1E-06 51.1 8.0 135 388-522 31-205 (248)
354 TIGR03345 VI_ClpV1 type VI sec 94.1 0.084 1.8E-06 65.7 6.8 38 170-209 193-230 (852)
355 cd02027 APSK Adenosine 5'-phos 94.1 0.31 6.6E-06 46.7 9.3 20 189-208 1-20 (149)
356 TIGR01360 aden_kin_iso1 adenyl 94.1 0.034 7.4E-07 56.1 2.9 23 186-208 2-24 (188)
357 PRK14969 DNA polymerase III su 94.1 0.94 2E-05 53.4 15.0 179 364-564 17-215 (527)
358 cd02025 PanK Pantothenate kina 94.1 0.028 6E-07 57.9 2.1 21 189-209 1-21 (220)
359 PF07693 KAP_NTPase: KAP famil 94.1 0.24 5.1E-06 55.1 9.8 38 173-210 5-43 (325)
360 PRK06067 flagellar accessory p 94.1 0.16 3.5E-06 53.2 8.0 60 174-237 12-71 (234)
361 TIGR03305 alt_F1F0_F1_bet alte 94.1 0.1 2.3E-06 58.7 6.7 90 190-280 141-244 (449)
362 PRK14970 DNA polymerase III su 94.1 1.7 3.6E-05 49.2 16.7 178 363-563 17-203 (367)
363 TIGR02397 dnaX_nterm DNA polym 94.1 1.2 2.7E-05 50.1 15.7 178 364-566 15-215 (355)
364 cd02024 NRK1 Nicotinamide ribo 94.1 0.03 6.4E-07 55.5 2.2 21 189-209 1-21 (187)
365 cd01130 VirB11-like_ATPase Typ 94.1 0.038 8.2E-07 55.4 3.0 113 187-309 25-138 (186)
366 PF05673 DUF815: Protein of un 94.1 0.36 7.9E-06 49.2 9.8 93 190-309 55-154 (249)
367 PRK04040 adenylate kinase; Pro 94.0 0.033 7.1E-07 55.6 2.5 22 188-209 3-24 (188)
368 cd01136 ATPase_flagellum-secre 94.0 0.24 5.3E-06 53.6 9.2 89 188-280 70-171 (326)
369 KOG0734 AAA+-type ATPase conta 94.0 0.8 1.7E-05 51.2 12.9 105 170-301 313-442 (752)
370 cd03283 ABC_MutS-like MutS-lik 94.0 0.11 2.4E-06 52.5 6.2 21 188-208 26-46 (199)
371 TIGR03346 chaperone_ClpB ATP-d 94.0 0.15 3.3E-06 64.0 8.7 95 187-292 595-693 (852)
372 PRK10865 protein disaggregatio 93.9 0.12 2.6E-06 64.6 7.7 23 187-209 598-620 (857)
373 PRK14971 DNA polymerase III su 93.9 0.31 6.8E-06 58.3 10.8 42 268-309 121-165 (614)
374 PF01583 APS_kinase: Adenylyls 93.9 0.049 1.1E-06 51.7 3.3 34 188-223 3-36 (156)
375 PRK08116 hypothetical protein; 93.9 0.61 1.3E-05 49.6 11.9 35 387-423 115-149 (268)
376 PRK14950 DNA polymerase III su 93.9 0.53 1.2E-05 56.4 12.8 192 363-566 16-218 (585)
377 TIGR02788 VirB11 P-type DNA tr 93.9 0.1 2.2E-06 56.9 6.2 114 187-310 144-257 (308)
378 TIGR03499 FlhF flagellar biosy 93.9 0.097 2.1E-06 56.2 5.8 23 186-208 193-215 (282)
379 PRK03839 putative kinase; Prov 93.8 0.035 7.5E-07 55.5 2.3 22 189-210 2-23 (180)
380 TIGR01040 V-ATPase_V1_B V-type 93.8 0.16 3.5E-06 56.9 7.5 91 190-280 144-259 (466)
381 COG1428 Deoxynucleoside kinase 93.8 0.032 7E-07 54.7 1.9 24 187-210 4-27 (216)
382 PRK06936 type III secretion sy 93.8 0.2 4.4E-06 56.2 8.4 89 188-280 163-264 (439)
383 PRK03992 proteasome-activating 93.8 0.7 1.5E-05 52.3 12.9 46 364-409 132-188 (389)
384 PRK08451 DNA polymerase III su 93.8 0.44 9.6E-06 55.4 11.3 39 267-305 116-156 (535)
385 cd03115 SRP The signal recogni 93.8 0.15 3.2E-06 50.6 6.7 20 189-208 2-21 (173)
386 COG0470 HolB ATPase involved i 93.8 0.39 8.4E-06 53.4 10.9 116 171-304 8-147 (325)
387 PRK00625 shikimate kinase; Pro 93.8 0.037 8.1E-07 54.2 2.3 20 190-209 3-22 (173)
388 PRK05922 type III secretion sy 93.8 0.13 2.8E-06 57.8 6.8 88 189-280 159-259 (434)
389 PRK14948 DNA polymerase III su 93.8 0.43 9.2E-06 57.2 11.5 124 153-307 16-162 (620)
390 TIGR02239 recomb_RAD51 DNA rep 93.8 0.28 6E-06 53.5 9.2 67 175-242 84-154 (316)
391 TIGR01420 pilT_fam pilus retra 93.8 0.12 2.6E-06 57.4 6.6 112 187-310 122-234 (343)
392 TIGR03346 chaperone_ClpB ATP-d 93.8 0.16 3.4E-06 63.8 8.3 38 170-209 179-216 (852)
393 cd03230 ABC_DR_subfamily_A Thi 93.8 0.17 3.8E-06 50.0 7.1 23 188-210 27-49 (173)
394 TIGR00150 HI0065_YjeE ATPase, 93.8 0.075 1.6E-06 49.0 4.0 39 172-210 7-45 (133)
395 PRK14722 flhF flagellar biosyn 93.7 0.31 6.8E-06 53.8 9.5 86 187-278 137-225 (374)
396 KOG0741 AAA+-type ATPase [Post 93.7 0.25 5.4E-06 54.9 8.5 110 185-315 536-660 (744)
397 TIGR02012 tigrfam_recA protein 93.7 0.13 2.8E-06 55.6 6.3 47 183-231 51-97 (321)
398 PRK09354 recA recombinase A; P 93.6 0.15 3.2E-06 55.6 6.7 55 176-232 48-103 (349)
399 PRK11331 5-methylcytosine-spec 93.6 0.23 4.9E-06 55.8 8.2 106 365-480 177-284 (459)
400 PRK06793 fliI flagellum-specif 93.6 0.54 1.2E-05 53.0 11.3 119 188-312 157-292 (432)
401 PRK05688 fliI flagellum-specif 93.6 0.26 5.6E-06 55.6 8.8 89 188-280 169-270 (451)
402 PRK07471 DNA polymerase III su 93.6 0.061 1.3E-06 59.8 3.9 41 267-307 140-182 (365)
403 cd00983 recA RecA is a bacter 93.6 0.15 3.4E-06 55.0 6.8 46 185-232 53-98 (325)
404 PRK06305 DNA polymerase III su 93.6 2.3 5E-05 49.0 16.7 178 363-563 17-216 (451)
405 PRK14087 dnaA chromosomal repl 93.6 2.7 5.8E-05 48.5 17.2 178 374-571 128-321 (450)
406 PRK07471 DNA polymerase III su 93.6 0.41 8.9E-06 53.3 10.2 196 361-569 17-238 (365)
407 PRK12727 flagellar biosynthesi 93.6 0.2 4.4E-06 57.2 7.8 22 187-208 350-371 (559)
408 cd02028 UMPK_like Uridine mono 93.5 0.043 9.2E-07 54.5 2.3 20 189-208 1-20 (179)
409 cd03282 ABC_MSH4_euk MutS4 hom 93.5 0.3 6.6E-06 49.5 8.4 119 187-314 29-159 (204)
410 PRK05707 DNA polymerase III su 93.5 2.4 5.2E-05 46.6 15.9 95 467-568 105-202 (328)
411 PRK10751 molybdopterin-guanine 93.5 0.055 1.2E-06 52.5 2.9 23 186-208 5-27 (173)
412 TIGR03496 FliI_clade1 flagella 93.5 0.26 5.6E-06 55.5 8.5 89 188-280 138-239 (411)
413 KOG0989 Replication factor C, 93.5 1.8 4E-05 45.2 13.6 188 363-569 36-231 (346)
414 TIGR03345 VI_ClpV1 type VI sec 93.5 0.15 3.2E-06 63.6 7.3 23 186-208 595-617 (852)
415 TIGR03877 thermo_KaiC_1 KaiC d 93.4 0.26 5.7E-06 51.6 8.1 59 174-237 8-67 (237)
416 KOG0744 AAA+-type ATPase [Post 93.4 0.086 1.9E-06 54.8 4.2 80 187-278 177-260 (423)
417 TIGR00554 panK_bact pantothena 93.4 0.056 1.2E-06 57.6 3.0 24 185-208 60-83 (290)
418 PF14532 Sigma54_activ_2: Sigm 93.4 0.12 2.7E-06 48.8 5.1 23 188-210 22-44 (138)
419 TIGR01039 atpD ATP synthase, F 93.4 0.21 4.6E-06 56.2 7.5 90 190-281 146-250 (461)
420 cd02020 CMPK Cytidine monophos 93.4 0.048 1E-06 52.3 2.3 20 189-208 1-20 (147)
421 PRK07960 fliI flagellum-specif 93.3 0.21 4.6E-06 56.1 7.5 23 188-210 176-198 (455)
422 TIGR02322 phosphon_PhnN phosph 93.3 0.052 1.1E-06 54.2 2.5 22 188-209 2-23 (179)
423 TIGR01313 therm_gnt_kin carboh 93.3 0.53 1.2E-05 46.0 9.6 20 190-209 1-20 (163)
424 PF05621 TniB: Bacterial TniB 93.3 5.8 0.00013 42.1 17.5 198 363-563 34-255 (302)
425 PRK08451 DNA polymerase III su 93.3 3.1 6.8E-05 48.5 17.1 176 363-565 14-214 (535)
426 cd03281 ABC_MSH5_euk MutS5 hom 93.3 0.2 4.4E-06 51.3 6.7 22 187-208 29-50 (213)
427 TIGR03324 alt_F1F0_F1_al alter 93.3 0.26 5.5E-06 56.2 8.0 93 190-286 165-273 (497)
428 PRK06217 hypothetical protein; 93.2 0.052 1.1E-06 54.3 2.3 22 189-210 3-24 (183)
429 PLN03186 DNA repair protein RA 93.2 0.2 4.4E-06 54.9 7.0 68 175-243 111-182 (342)
430 PRK07196 fliI flagellum-specif 93.2 0.24 5.1E-06 55.8 7.6 23 188-210 156-178 (434)
431 PRK09112 DNA polymerase III su 93.2 0.48 1E-05 52.5 9.9 39 266-304 139-179 (351)
432 PRK14965 DNA polymerase III su 93.2 2.3 4.9E-05 50.9 16.3 184 363-569 16-221 (576)
433 PF08423 Rad51: Rad51; InterP 93.2 0.23 5.1E-06 52.4 7.2 67 175-242 26-96 (256)
434 PRK06305 DNA polymerase III su 93.2 0.5 1.1E-05 54.5 10.4 37 171-208 24-60 (451)
435 PLN02318 phosphoribulokinase/u 93.1 0.077 1.7E-06 61.0 3.6 32 178-209 56-87 (656)
436 TIGR03263 guanyl_kin guanylate 93.1 0.061 1.3E-06 53.8 2.6 22 188-209 2-23 (180)
437 COG1936 Predicted nucleotide k 93.1 0.062 1.3E-06 50.9 2.4 20 189-208 2-21 (180)
438 PRK06696 uridine kinase; Valid 93.0 0.12 2.6E-06 53.5 4.8 42 368-409 3-45 (223)
439 PRK14738 gmk guanylate kinase; 93.0 0.074 1.6E-06 54.3 3.1 31 179-209 5-35 (206)
440 PRK06647 DNA polymerase III su 93.0 0.73 1.6E-05 54.5 11.6 38 171-209 23-60 (563)
441 PRK07133 DNA polymerase III su 92.9 0.62 1.3E-05 55.9 10.9 43 267-309 117-162 (725)
442 PLN03187 meiotic recombination 92.9 0.25 5.5E-06 54.1 7.2 68 175-243 114-185 (344)
443 cd03287 ABC_MSH3_euk MutS3 hom 92.9 0.29 6.3E-06 50.2 7.2 110 187-312 31-160 (222)
444 PRK00889 adenylylsulfate kinas 92.9 0.065 1.4E-06 53.2 2.5 22 188-209 5-26 (175)
445 CHL00095 clpC Clp protease ATP 92.9 0.25 5.5E-06 61.9 8.2 96 187-292 539-637 (821)
446 PRK00131 aroK shikimate kinase 92.9 0.071 1.5E-06 53.0 2.8 23 187-209 4-26 (175)
447 COG1124 DppF ABC-type dipeptid 92.9 0.069 1.5E-06 53.7 2.5 21 188-208 34-54 (252)
448 COG1419 FlhF Flagellar GTP-bin 92.9 0.087 1.9E-06 57.6 3.4 22 187-208 203-225 (407)
449 KOG0991 Replication factor C, 92.8 0.21 4.6E-06 49.3 5.7 26 183-208 44-69 (333)
450 PHA00729 NTP-binding motif con 92.8 0.065 1.4E-06 54.3 2.3 23 187-209 17-39 (226)
451 TIGR00176 mobB molybdopterin-g 92.8 0.086 1.9E-06 50.7 3.1 21 189-209 1-21 (155)
452 TIGR03574 selen_PSTK L-seryl-t 92.8 0.43 9.4E-06 50.5 8.7 20 190-209 2-21 (249)
453 PRK09099 type III secretion sy 92.8 0.33 7.2E-06 54.9 8.1 90 187-280 163-265 (441)
454 COG0593 DnaA ATPase involved i 92.8 0.24 5.2E-06 54.9 6.8 100 186-304 112-216 (408)
455 COG2019 AdkA Archaeal adenylat 92.8 0.076 1.6E-06 49.7 2.5 22 187-208 4-25 (189)
456 PF00910 RNA_helicase: RNA hel 92.8 0.062 1.3E-06 48.1 1.9 20 190-209 1-20 (107)
457 PRK14723 flhF flagellar biosyn 92.8 0.45 9.7E-06 57.3 9.4 23 187-209 185-207 (767)
458 COG3903 Predicted ATPase [Gene 92.7 0.031 6.7E-07 60.5 -0.1 113 186-306 13-127 (414)
459 PRK03846 adenylylsulfate kinas 92.7 0.083 1.8E-06 53.6 3.0 25 185-209 22-46 (198)
460 PRK05707 DNA polymerase III su 92.7 0.72 1.6E-05 50.6 10.4 41 266-307 105-147 (328)
461 PF03205 MobB: Molybdopterin g 92.7 0.066 1.4E-06 50.5 2.0 38 188-227 1-39 (140)
462 PRK14953 DNA polymerase III su 92.7 5.7 0.00012 46.3 18.2 176 364-564 17-215 (486)
463 TIGR02880 cbbX_cfxQ probable R 92.7 2 4.3E-05 46.3 13.6 22 388-409 60-81 (284)
464 cd00267 ABC_ATPase ABC (ATP-bi 92.7 0.16 3.5E-06 49.3 4.9 113 188-312 26-146 (157)
465 COG3640 CooC CO dehydrogenase 92.7 0.074 1.6E-06 53.0 2.4 20 189-208 2-21 (255)
466 PRK08472 fliI flagellum-specif 92.7 0.43 9.3E-06 53.8 8.7 88 188-280 158-258 (434)
467 PRK00771 signal recognition pa 92.6 0.39 8.5E-06 54.5 8.4 56 186-243 94-150 (437)
468 cd00071 GMPK Guanosine monopho 92.6 0.078 1.7E-06 49.9 2.5 22 189-210 1-22 (137)
469 cd00227 CPT Chloramphenicol (C 92.6 0.076 1.7E-06 52.7 2.5 22 188-209 3-24 (175)
470 PRK11034 clpA ATP-dependent Cl 92.6 0.18 3.9E-06 61.5 6.1 23 187-209 488-510 (758)
471 cd00820 PEPCK_HprK Phosphoenol 92.6 0.085 1.9E-06 46.4 2.4 21 188-208 16-36 (107)
472 TIGR03497 FliI_clade2 flagella 92.5 0.42 9.2E-06 53.8 8.4 89 188-280 138-239 (413)
473 PRK13949 shikimate kinase; Pro 92.5 0.077 1.7E-06 52.1 2.3 22 189-210 3-24 (169)
474 PRK05439 pantothenate kinase; 92.5 0.14 3E-06 55.1 4.3 25 184-208 83-107 (311)
475 TIGR00991 3a0901s02IAP34 GTP-b 92.5 1.4 3E-05 47.2 11.6 36 176-211 27-62 (313)
476 COG4608 AppF ABC-type oligopep 92.5 0.57 1.2E-05 48.4 8.5 135 387-526 40-188 (268)
477 PF00004 AAA: ATPase family as 92.4 0.28 6.1E-06 45.9 6.1 21 389-409 1-21 (132)
478 PRK13947 shikimate kinase; Pro 92.4 0.075 1.6E-06 52.6 2.2 19 190-208 4-22 (171)
479 TIGR03498 FliI_clade3 flagella 92.4 0.2 4.2E-06 56.4 5.6 89 188-280 141-242 (418)
480 PF00005 ABC_tran: ABC transpo 92.4 0.091 2E-06 49.7 2.6 23 188-210 12-34 (137)
481 TIGR01041 ATP_syn_B_arch ATP s 92.4 0.32 7E-06 55.3 7.3 91 190-280 144-250 (458)
482 cd00464 SK Shikimate kinase (S 92.4 0.082 1.8E-06 51.2 2.3 19 190-208 2-20 (154)
483 cd03243 ABC_MutS_homologs The 92.3 0.3 6.5E-06 49.7 6.5 21 188-208 30-50 (202)
484 COG0237 CoaE Dephospho-CoA kin 92.3 0.086 1.9E-06 52.8 2.4 21 188-208 3-23 (201)
485 COG1102 Cmk Cytidylate kinase 92.3 0.087 1.9E-06 49.1 2.2 44 189-245 2-45 (179)
486 PF07726 AAA_3: ATPase family 92.3 0.05 1.1E-06 49.2 0.6 27 190-218 2-28 (131)
487 PRK06647 DNA polymerase III su 92.3 5 0.00011 47.6 17.3 187 363-564 16-215 (563)
488 TIGR01287 nifH nitrogenase iro 92.3 0.08 1.7E-06 57.1 2.4 21 188-208 1-21 (275)
489 PRK14974 cell division protein 92.3 0.4 8.6E-06 52.5 7.6 23 186-208 139-161 (336)
490 PRK14971 DNA polymerase III su 92.3 1.6 3.5E-05 52.4 13.3 174 364-563 18-216 (614)
491 PRK05563 DNA polymerase III su 92.3 1.3 2.7E-05 52.8 12.4 122 153-307 16-160 (559)
492 COG0194 Gmk Guanylate kinase [ 92.3 0.11 2.5E-06 50.0 3.0 23 188-210 5-27 (191)
493 COG4088 Predicted nucleotide k 92.2 0.18 3.8E-06 49.0 4.2 20 189-208 3-22 (261)
494 PRK10078 ribose 1,5-bisphospho 92.2 0.092 2E-06 52.7 2.5 22 189-210 4-25 (186)
495 PRK15455 PrkA family serine pr 92.2 0.14 3E-06 58.7 4.1 41 169-209 81-125 (644)
496 PRK00300 gmk guanylate kinase; 92.2 0.09 1.9E-06 53.9 2.5 24 187-210 5-28 (205)
497 PTZ00088 adenylate kinase 1; P 92.2 0.34 7.4E-06 50.0 6.7 19 190-208 9-27 (229)
498 TIGR00362 DnaA chromosomal rep 92.2 4.6 0.0001 46.3 16.7 146 373-540 122-282 (405)
499 TIGR01026 fliI_yscN ATPase Fli 92.2 0.45 9.8E-06 54.1 8.2 89 188-280 164-265 (440)
500 KOG1969 DNA replication checkp 92.2 0.27 5.8E-06 57.1 6.3 76 184-281 323-400 (877)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-70 Score=653.43 Aligned_cols=724 Identities=23% Similarity=0.293 Sum_probs=483.8
Q ss_pred hHHHHHHHHhHhHhhcCH--HHHHHHHHHHHHHHHhhhhhcCC------------CchhHHHhhhhhhhHHHHHHHHHHh
Q 048834 7 VLPVIVKLREVEKEIIDP--ALASQVRDSIKELKSLEGQEGNG------------LSPEFLRAVYLAEDTIDTFLKEIRK 72 (1108)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~~ed~~d~~~~~~~~ 72 (1108)
+...+.++.+.+..+... +..+++..++++|..++..++++ |.+.+++++|++||.++.+..+...
T Consensus 5 ~s~~~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~ 84 (889)
T KOG4658|consen 5 VSFGVEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIE 84 (889)
T ss_pred EEEehhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333322 45557888888888888877766 9999999999999999999886544
Q ss_pred hhccccC----ceeeecccchhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCCCCcccccCccccccccchhhh
Q 048834 73 EFYRQQN----HLVKAGIDLRSAYIKSRFSDKMKKLVGVIKEESSAMLVDAAALTSGKSRKKPELQGTRSSTKLPVENAA 148 (1108)
Q Consensus 73 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1108)
.+....- ...+.. .....+++....+..+.+++..+....+..............+.....+++.+...++.
T Consensus 85 ~~~~~~l~~~~~~~~~~---c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~- 160 (889)
T KOG4658|consen 85 RKANDLLSTRSVERQRL---CLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD- 160 (889)
T ss_pred HHHhHHhhhhHHHHHHH---hhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-
Confidence 4221111 011111 11133445555555555555444444433332210111110011112233333333333
Q ss_pred ccchhHhhhcccccccchhhhhhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcc-cccCCcceeEEEcCC
Q 048834 149 FNNASEAANSNKKTGMLDFILNDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDD-IKNHFQCRAWFLVPP 227 (1108)
Q Consensus 149 ~g~~~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~-~~~~F~~~~~~~~s~ 227 (1108)
+|. +..++++++.|+.++. .+|||+||||+||||||+.|||+.. ++.+||.++||+||+
T Consensus 161 VG~------------------e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk 220 (889)
T KOG4658|consen 161 VGL------------------ETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK 220 (889)
T ss_pred ccH------------------HHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc
Confidence 554 6888999999998766 8899999999999999999999988 999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 228 RLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 228 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
+|+..+++++|++.++...........+.++..|.+.|++|||+|||||||+...|+.+..++|...+||||++|||++.
T Consensus 221 ~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~ 300 (889)
T KOG4658|consen 221 EFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEE 300 (889)
T ss_pred cccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHh
Confidence 99999999999999887655455444578899999999999999999999999999999999999999999999999999
Q ss_pred hhhh-ccccccccccchhHHhhhccccccccccccCCCCcccccCCCccccccCCCCceeeehHHHHHHHHHHhCCCCce
Q 048834 308 AAMH-RNLNFFGGDLNLSFKEMKARYPLHEAVVVRNDDDVNTIRPHISVAEILGPEAELVGLKDQLLRLAQLTMSSSSKY 386 (1108)
Q Consensus 308 Va~~-~~~~~~~~~~~~~~l~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~l~~~~~~~ 386 (1108)
||.. +++. ..+++++|+.++||.||+..||....
T Consensus 301 V~~~~m~~~---~~~~v~~L~~~eaW~LF~~~v~~~~~------------------------------------------ 335 (889)
T KOG4658|consen 301 VCGRAMGVD---YPIEVECLTPEEAWDLFQKKVGPNTL------------------------------------------ 335 (889)
T ss_pred hhhccccCC---ccccccccCccccHHHHHHhhccccc------------------------------------------
Confidence 9998 6665 89999999999999999877653210
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQ 466 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 466 (1108)
T Consensus 336 -------------------------------------------------------------------------------- 335 (889)
T KOG4658|consen 336 -------------------------------------------------------------------------------- 335 (889)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCch
Q 048834 467 SKRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRAS 546 (1108)
Q Consensus 467 ~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~ 546 (1108)
+ .++
T Consensus 336 -------------------------------~---------------------------------------------~~~ 339 (889)
T KOG4658|consen 336 -------------------------------G---------------------------------------------SHP 339 (889)
T ss_pred -------------------------------c---------------------------------------------ccc
Confidence 0 022
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCCChhHHHHHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCc
Q 048834 547 ELLNLKEKIWKKCGGLPLAICVLGGLLSTNRQIQNSDWEKVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDN 626 (1108)
Q Consensus 547 ~~~~~~~~i~~~~~glPlal~~~~~~l~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1108)
.+..++++++++|+|+|+|+.++|..++.+.. +.+|+.+.+.+.+.. ..+.+.+ .
T Consensus 340 ~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t--~~eW~~~~~~l~s~~----------------------~~~~~~~-~ 394 (889)
T KOG4658|consen 340 DIEELAKEVAEKCGGLPLALNVLGGLLACKKT--VQEWRRALNVLKSSL----------------------AADFSGM-E 394 (889)
T ss_pred cHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc--HHHHHHHHccccccc----------------------cCCCCch-h
Confidence 25667888999999999999999999999987 789999999887721 0111111 1
Q ss_pred hhhhhHHhhccccchHhHHHHHhhhccCCCCcccchHHHHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHccchhhhh
Q 048834 627 LDASSIWGLGYKYLSAHLKACLHYLCLFPKSHEIPVRRLLQLWLAERFVTPSEGEEMTPEDRARKDFEQLEQRNMIEVVK 706 (1108)
Q Consensus 627 ~~~~~~l~~s~~~l~~~l~~~~~~~~~f~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 706 (1108)
..+.+++.+||++||.++|+||+||+.||+++.++.+.++..|+++||++...... .+.+.+..++.+|++++++....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~-~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGE-TAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccccc-chhcchHHHHHHHHHHHHHhhcc
Confidence 27889999999999999999999999999999999999999999999999866555 88999999999999999988876
Q ss_pred c---ccCCceeecCCC--------------------------CCCcccccccceEEeecccCCCCCchh----H------
Q 048834 707 R---RLSEHLYNQNDS--------------------------VPPDEYIECLHSYLSFDKRMGDKPADE----V------ 747 (1108)
Q Consensus 707 ~---~~~~~l~~~~~~--------------------------~~~~~~~~~l~~ll~~~~~~~~~~~~~----~------ 747 (1108)
. .....|||.... .+........|++...+......+... +
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~ 553 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQ 553 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEe
Confidence 3 244456622210 011111222233333222211111000 0
Q ss_pred HH--HHhhhhc--ccCCCeeEEEEeCCCC-CCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCC-cCcc
Q 048834 748 GN--LLNKMIN--RRGYRLLRVLDLEGVY-KPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHT-NITS 821 (1108)
Q Consensus 748 ~~--l~~~~~~--~~~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~-~l~~ 821 (1108)
.+ .+...+. +..++.||+|||++|. +.++|++|+.|.+||||++++|.+..||.++++|++|.|||+..+ .+..
T Consensus 554 ~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~ 633 (889)
T KOG4658|consen 554 RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES 633 (889)
T ss_pred ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc
Confidence 00 0111111 4557778888888764 677888888888888888888888888888888888888888877 4445
Q ss_pred CChhhccccccCEEEeccccccccccCCccccCcccccccccccccCCC-CChhhhccCcCCce----eeeeecccchhh
Q 048834 822 LPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKS-PPLNWLESLRGLKK----LGLTCHIASLGQ 896 (1108)
Q Consensus 822 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~L~~----L~l~~~~~~~~~ 896 (1108)
+|..+..|++|++|.+......... ..++.+.+|++|....+.... .....+..+..|.. +.+.++.. ..
T Consensus 634 ~~~i~~~L~~Lr~L~l~~s~~~~~~---~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~--~~ 708 (889)
T KOG4658|consen 634 IPGILLELQSLRVLRLPRSALSNDK---LLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSK--RT 708 (889)
T ss_pred ccchhhhcccccEEEeeccccccch---hhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccc--ce
Confidence 5555555888888887664422111 123333344443332222111 11222233333332 22222111 34
Q ss_pred HHHHHhhcCCCcEEEEEecCCCCCCCcc-ccCCCC-CccCccceEeecc-cCCCCCCCCCCCCcceEEEEeccCCCCCcc
Q 048834 897 IAKWIQDLISLESLRLRSLNDFGEPSDL-VIGPLN-NHRALNELYLLGK-LPEPLKLDKLPPNLRILTLSLSYLSEDPMP 973 (1108)
Q Consensus 897 lp~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~-~l~~L~~l~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 973 (1108)
.+..+..+.+|+.|.+.+|......... ...... .++++..+.+..+ .|..+.+..++|+|+.|.+..|...+.+++
T Consensus 709 ~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCC
Confidence 5566777889999999888776432211 111111 1345555555555 355555566778999999988888777766
Q ss_pred ccccccccceeee
Q 048834 974 VLGQLKELNILRL 986 (1108)
Q Consensus 974 ~~~~l~~L~~L~L 986 (1108)
....+..++.+.+
T Consensus 789 ~~k~~~~l~~~i~ 801 (889)
T KOG4658|consen 789 KLKALLELKELIL 801 (889)
T ss_pred HHHHhhhcccEEe
Confidence 6666666655434
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9.5e-53 Score=534.56 Aligned_cols=628 Identities=16% Similarity=0.189 Sum_probs=424.9
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEc---CCC-----------CC-HHHH
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLV---PPR-----------LD-KREL 234 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~---s~~-----------~~-~~~l 234 (1108)
+.+.+++..+|..+.++++|||||||||+||||||+++|+ ++..+|+..+|+.. +.. ++ ...+
T Consensus 190 ~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l 267 (1153)
T PLN03210 190 EDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHL 267 (1153)
T ss_pred HHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHH
Confidence 6788888888887888999999999999999999999995 58899999888742 211 11 2356
Q ss_pred HHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhccc
Q 048834 235 AINILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRNL 314 (1108)
Q Consensus 235 ~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~ 314 (1108)
+++++.++..... .. ... ...++++|++||+||||||||+..+|+.+.+...|+++|||||||||+++|+..+++
T Consensus 268 ~~~~l~~il~~~~-~~---~~~-~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~ 342 (1153)
T PLN03210 268 QRAFLSEILDKKD-IK---IYH-LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGI 342 (1153)
T ss_pred HHHHHHHHhCCCC-cc---cCC-HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCC
Confidence 6777776654321 11 111 245788999999999999999999999999988999999999999999999988776
Q ss_pred cccccccchhHHhhhccccccccccccCCCCcccccCCCccccccCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcC
Q 048834 315 NFFGGDLNLSFKEMKARYPLHEAVVVRNDDDVNTIRPHISVAEILGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGV 394 (1108)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~ 394 (1108)
. ++|++..++.++||+||+.+||....
T Consensus 343 ~---~~~~v~~l~~~ea~~LF~~~Af~~~~-------------------------------------------------- 369 (1153)
T PLN03210 343 D---HIYEVCLPSNELALEMFCRSAFKKNS-------------------------------------------------- 369 (1153)
T ss_pred C---eEEEecCCCHHHHHHHHHHHhcCCCC--------------------------------------------------
Confidence 5 78999999999999999887764210
Q ss_pred CCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEE
Q 048834 395 AGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVL 474 (1108)
Q Consensus 395 ~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvl 474 (1108)
T Consensus 370 -------------------------------------------------------------------------------- 369 (1153)
T PLN03210 370 -------------------------------------------------------------------------------- 369 (1153)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHH
Q 048834 475 DDVHLPGAWYELQRIFSPNTSSSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEK 554 (1108)
Q Consensus 475 Ddv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 554 (1108)
....+.+++.+
T Consensus 370 ---------------------------------------------------------------------~~~~~~~l~~~ 380 (1153)
T PLN03210 370 ---------------------------------------------------------------------PPDGFMELASE 380 (1153)
T ss_pred ---------------------------------------------------------------------CcHHHHHHHHH
Confidence 01223445677
Q ss_pred HHHHcCCchhHHHHHHHHhhcCCCCChhHHHHHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCchhhhhHHh
Q 048834 555 IWKKCGGLPLAICVLGGLLSTNRQIQNSDWEKVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDNLDASSIWG 634 (1108)
Q Consensus 555 i~~~~~glPlal~~~~~~l~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 634 (1108)
++++|+|+|+|++++|+.++++.. .+|..+++.+...+ ...+..+++
T Consensus 381 iv~~c~GLPLAl~vlgs~L~~k~~---~~W~~~l~~L~~~~------------------------------~~~I~~~L~ 427 (1153)
T PLN03210 381 VALRAGNLPLGLNVLGSYLRGRDK---EDWMDMLPRLRNGL------------------------------DGKIEKTLR 427 (1153)
T ss_pred HHHHhCCCcHHHHHHHHHHcCCCH---HHHHHHHHHHHhCc------------------------------cHHHHHHHH
Confidence 899999999999999999998754 89999988766521 016889999
Q ss_pred hccccchH-hHHHHHhhhccCCCCcccchHHHHHHHH---------------hcCcccCCCCCCCCHHHHHHHHHHHHHH
Q 048834 635 LGYKYLSA-HLKACLHYLCLFPKSHEIPVRRLLQLWL---------------AERFVTPSEGEEMTPEDRARKDFEQLEQ 698 (1108)
Q Consensus 635 ~s~~~l~~-~l~~~~~~~~~f~~~~~~~~~~l~~l~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 698 (1108)
+||+.|+. ..|.||+++++|+.+..+.. +..|. ..++++... +.+.|+++.+.+..+++.
T Consensus 428 ~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~~~~~l~~L~~ksLi~~~~-~~~~MHdLl~~~~r~i~~ 503 (1153)
T PLN03210 428 VSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLDVNIGLKNLVDKSLIHVRE-DIVEMHSLLQEMGKEIVR 503 (1153)
T ss_pred HhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCCchhChHHHHhcCCEEEcC-CeEEhhhHHHHHHHHHHH
Confidence 99999986 58999999999987754321 22333 333443332 234677777766666653
Q ss_pred ccchhhhhc----------------ccCCceee----cC------CCCCCcccccccceEEeecccCCCCCchhHHHHHh
Q 048834 699 RNMIEVVKR----------------RLSEHLYN----QN------DSVPPDEYIECLHSYLSFDKRMGDKPADEVGNLLN 752 (1108)
Q Consensus 699 ~~~~~~~~~----------------~~~~~l~~----~~------~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~l~~ 752 (1108)
......... .....+.. .. .....+..++.|+.+-......... ..+. .+
T Consensus 504 ~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~--~~~~--~~ 579 (1153)
T PLN03210 504 AQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK--KEVR--WH 579 (1153)
T ss_pred hhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc--ccce--ee
Confidence 221000000 00000100 00 0011122344444332222110000 0000 00
Q ss_pred hhhcccCC-CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCC-cCccCChhhcccc
Q 048834 753 KMINRRGY-RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHT-NITSLPKSIWKVK 830 (1108)
Q Consensus 753 ~~~~~~~l-~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~i~~l~ 830 (1108)
....+..+ ++||+|.+.++.+..+|..+ .+.+|+.|+++++.+..+|.++..+++|++|+|++| .+..+|. ++.++
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~ 657 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT 657 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCC
Confidence 00011122 24888888888888888777 468888888888888888888888888888888887 5667764 77888
Q ss_pred ccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEE
Q 048834 831 TLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESL 910 (1108)
Q Consensus 831 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L 910 (1108)
+|++|++.+|..... .|..++++++|+.|.+..|.....++..+ ++++|+.|++++|... ..+|. ...+|+.|
T Consensus 658 ~Le~L~L~~c~~L~~--lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L-~~~p~---~~~nL~~L 730 (1153)
T PLN03210 658 NLETLKLSDCSSLVE--LPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRL-KSFPD---ISTNISWL 730 (1153)
T ss_pred cccEEEecCCCCccc--cchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCc-ccccc---ccCCcCee
Confidence 888888888865543 35667888888888888887777666655 6788888888876543 45553 24578888
Q ss_pred EEEecCCCCCCCccccCCCCCccCccceEeeccc---------CCCCCCCCCCCCcceEEEEeccCCCCCcccccccccc
Q 048834 911 RLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKL---------PEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKEL 981 (1108)
Q Consensus 911 ~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 981 (1108)
.+.++.....|.. ..+++|..|.+.++. +........+++|+.|+|++|.....+|.+++++++|
T Consensus 731 ~L~~n~i~~lP~~------~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 731 DLDETAIEEFPSN------LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred ecCCCcccccccc------ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 8877664432222 235556666554421 0000111234577777777776666777777777777
Q ss_pred ceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCc--------------------eeeCCCcccccceEeecccCCC
Q 048834 982 NILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELRE--------------------WTIGKEAMPELRELEIRCCKKM 1041 (1108)
Q Consensus 982 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--------------------lp~~~~~l~~L~~L~i~~c~~l 1041 (1108)
+.|+|++|...+. +|... .+++|+.|++++|..+.. +|..+..+++|+.|++++|+.+
T Consensus 805 ~~L~Ls~C~~L~~-LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 805 EHLEIENCINLET-LPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CEEECCCCCCcCe-eCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 7777777765443 33333 566777777777665544 4445567888999999999988
Q ss_pred C-CCcccCCCCCCCEEEEecCchH
Q 048834 1042 K-KPIELEKLSSLKELTLTDMKKS 1064 (1108)
Q Consensus 1042 ~-lp~~l~~l~~L~~L~l~~c~~~ 1064 (1108)
. +|..+..+++|+.+++.+|++.
T Consensus 883 ~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 883 QRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CccCcccccccCCCeeecCCCccc
Confidence 8 8888888889999999999753
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-34 Score=368.51 Aligned_cols=746 Identities=16% Similarity=0.144 Sum_probs=448.9
Q ss_pred eeEEEcCCCCCHHHHHHHHHHHhCCCch----hHHHHhhcchHHHHHHHccCCe-EEEEEcCCCChhhH--hHhhhhCCC
Q 048834 220 RAWFLVPPRLDKRELAINILNQFAPTDV----ELEEKLLESPQTVVHNYLIHKR-YLVILTDVRTPDIW--EIIKFLFPN 292 (1108)
Q Consensus 220 ~~~~~~s~~~~~~~l~~~i~~~~~~~~~----~~~~~~~~~l~~~l~~~l~~kr-~LlVLDDVw~~~~~--~~l~~~~~~ 292 (1108)
-+|++.......+.....+..++..+.- +.+...-+.+...+.++++.-| .++|+-.-.....| ++|..-...
T Consensus 14 ~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~ 93 (1153)
T PLN03210 14 DVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRC 93 (1153)
T ss_pred cEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHh
Confidence 4577765544444455555555443321 1111112233345666676554 56667777777776 666554432
Q ss_pred -CCCCcEEEEEecchhhhhhccccccccccchhHH--------hhhccccc----ccccccc---C-CCC-------ccc
Q 048834 293 -SLSGSRVILSFREADAAMHRNLNFFGGDLNLSFK--------EMKARYPL----HEAVVVR---N-DDD-------VNT 348 (1108)
Q Consensus 293 -~~~GSrIiiTTR~~~Va~~~~~~~~~~~~~~~~l--------~~~~~~~L----f~~~a~~---~-~~~-------~~~ 348 (1108)
...|-.||......+........ ..|.-.+. +..+.|.- ....+.. . .+. ...
T Consensus 94 ~~~~~~~v~pvfy~v~p~~v~~~~---g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~ 170 (1153)
T PLN03210 94 KEELGQLVIPVFYGLDPSHVRKQT---GDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIAND 170 (1153)
T ss_pred hhhcCceEEEEEecccHHHHhhcc---chHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHH
Confidence 34567788888887766544332 22211111 11122221 1111110 0 000 001
Q ss_pred ccCCCccccccCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEe---c
Q 048834 349 IRPHISVAEILGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANV---D 425 (1108)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v---~ 425 (1108)
+...+.. ..+....+++|++..++++..++.-....+++++|+|++|+||||+|+++|+. +...|+..+|+.. .
T Consensus 171 v~~~l~~-~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~ 247 (1153)
T PLN03210 171 VLGKLNL-TPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFIS 247 (1153)
T ss_pred HHHhhcc-ccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccc
Confidence 1111111 12234567899999999999988766667899999999999999999999997 7888988877641 0
Q ss_pred cCCC---------cC-HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCChhhHHHHHHHhCCCCC
Q 048834 426 VSHD---------FD-LRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLPGAWYELQRIFSPNTS 495 (1108)
Q Consensus 426 ~s~~---------~~-~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~ 495 (1108)
.+.. .+ ...+...++.++.......... ...+++.+.++++|+|+||+|+..+|+.+..... ++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~--~~ 321 (1153)
T PLN03210 248 KSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ--WF 321 (1153)
T ss_pred cchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc--cC
Confidence 1110 00 1122333333332211110001 1456788999999999999999999998876543 77
Q ss_pred CCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHhhc
Q 048834 496 SSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLLST 575 (1108)
Q Consensus 496 ~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l~~ 575 (1108)
+.|++|++|||+..++..++. ..+|++..++.++|+++|+..++. .....+-..+ ....++..+.+
T Consensus 322 ~~GsrIIiTTrd~~vl~~~~~-~~~~~v~~l~~~ea~~LF~~~Af~---~~~~~~~~~~----------l~~~iv~~c~G 387 (1153)
T PLN03210 322 GSGSRIIVITKDKHFLRAHGI-DHIYEVCLPSNELALEMFCRSAFK---KNSPPDGFME----------LASEVALRAGN 387 (1153)
T ss_pred CCCcEEEEEeCcHHHHHhcCC-CeEEEecCCCHHHHHHHHHHHhcC---CCCCcHHHHH----------HHHHHHHHhCC
Confidence 899999999999999876543 468999999999999999987652 1111110111 12233444443
Q ss_pred CCCCChhHHHHHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCchhhhhHHhhccccchHhH----HHHHhhh
Q 048834 576 NRQIQNSDWEKVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDNLDASSIWGLGYKYLSAHL----KACLHYL 651 (1108)
Q Consensus 576 ~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~l----~~~~~~~ 651 (1108)
-| -....+...+...+ .. .+..++.---..++..+ +.+|..+
T Consensus 388 LP----LAl~vlgs~L~~k~------~~------------------------~W~~~l~~L~~~~~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 388 LP----LGLNVLGSYLRGRD------KE------------------------DWMDMLPRLRNGLDGKIEKTLRVSYDGL 433 (1153)
T ss_pred Cc----HHHHHHHHHHcCCC------HH------------------------HHHHHHHHHHhCccHHHHHHHHHhhhcc
Confidence 33 33333333333210 00 11111111111222233 3232221
Q ss_pred ccCCCCcccchHHHHHHHHhcCcccCCCCCCCCHHHH------HHHHHHHHHHccchhhhhcccCCceeecCC----CC-
Q 048834 652 CLFPKSHEIPVRRLLQLWLAERFVTPSEGEEMTPEDR------ARKDFEQLEQRNMIEVVKRRLSEHLYNQND----SV- 720 (1108)
Q Consensus 652 ~~f~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~----~~- 720 (1108)
.. .....+-++++.-|... .... ....+ ....+..|+++++++..... ..||+... ..
T Consensus 434 ~~-------~~~k~~Fl~ia~ff~~~-~~~~-v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~--~~MHdLl~~~~r~i~ 502 (1153)
T PLN03210 434 NN-------KKDKAIFRHIACLFNGE-KVND-IKLLLANSDLDVNIGLKNLVDKSLIHVREDI--VEMHSLLQEMGKEIV 502 (1153)
T ss_pred Cc-------cchhhhhheehhhcCCC-CHHH-HHHHHHhcCCCchhChHHHHhcCCEEEcCCe--EEhhhHHHHHHHHHH
Confidence 10 01111223333322111 0000 00000 11236678888887654321 23442211 00
Q ss_pred ---C-Ccccc-------------------cccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCC-----
Q 048834 721 ---P-PDEYI-------------------ECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVY----- 772 (1108)
Q Consensus 721 ---~-~~~~~-------------------~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~----- 772 (1108)
+ .+..- ...+. +.++.... ..+.-.-..+.++++|++|.+..+.
T Consensus 503 ~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~-i~l~~~~~-------~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~ 574 (1153)
T PLN03210 503 RAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLG-ITLDIDEI-------DELHIHENAFKGMRNLLFLKFYTKKWDQKK 574 (1153)
T ss_pred HhhcCCCCcceeEeCHHHHHHHHHhCcccceeeE-EEeccCcc-------ceeeecHHHHhcCccccEEEEecccccccc
Confidence 0 00000 00000 00000000 0000011234568889999996542
Q ss_pred --CCCCchhhcCC-CCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCC
Q 048834 773 --KPVLPETVGKL-QLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKP 849 (1108)
Q Consensus 773 --~~~lp~~i~~l-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 849 (1108)
...+|..+..+ .+|++|++.++.+..+|..+ .+.+|+.|++.++.+..+|.++..+++|+.|++++|...... |
T Consensus 575 ~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p 651 (1153)
T PLN03210 575 EVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI--P 651 (1153)
T ss_pred cceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC--C
Confidence 12467777776 46999999999999999988 679999999999999999999999999999999988655444 3
Q ss_pred ccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCC
Q 048834 850 FVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPL 929 (1108)
Q Consensus 850 ~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 929 (1108)
. ++.+++|+.|++..|.....++..+..+++|+.|++++|... ..+|..+ ++++|+.|.+++|......+..
T Consensus 652 ~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----- 723 (1153)
T PLN03210 652 D-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-EILPTGI-NLKSLYRLNLSGCSRLKSFPDI----- 723 (1153)
T ss_pred c-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-CccCCcC-CCCCCCEEeCCCCCCccccccc-----
Confidence 3 788999999999999888889999999999999999976543 6777655 6889999999999766544322
Q ss_pred CCccCccceEeecc----cCCCCCCCCCCCCcceEEEEeccCCC------CC-ccccccccccceeeeccccccCceeee
Q 048834 930 NNHRALNELYLLGK----LPEPLKLDKLPPNLRILTLSLSYLSE------DP-MPVLGQLKELNILRLFAHSFMGEEMTC 998 (1108)
Q Consensus 930 ~~l~~L~~l~l~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~------~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~ 998 (1108)
..+|+.|++.++ +|... .+++|++|.+.++.... .+ +.....+++|+.|+|++|....+ +|.
T Consensus 724 --~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~ 796 (1153)
T PLN03210 724 --STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPS 796 (1153)
T ss_pred --cCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc-cCh
Confidence 467888888766 23322 23688888887654211 11 11123467999999999987665 677
Q ss_pred CCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-C--------------------CcccCCCCCCCEEE
Q 048834 999 GDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-K--------------------PIELEKLSSLKELT 1057 (1108)
Q Consensus 999 ~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-l--------------------p~~l~~l~~L~~L~ 1057 (1108)
.++++++|+.|++++|..++.+|... .+++|+.|++++|..+. + |..+..+++|+.|+
T Consensus 797 si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD 875 (1153)
T ss_pred hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence 78999999999999999999999876 68899999999987664 3 44556677888888
Q ss_pred EecCch
Q 048834 1058 LTDMKK 1063 (1108)
Q Consensus 1058 l~~c~~ 1063 (1108)
+.+|++
T Consensus 876 L~~C~~ 881 (1153)
T PLN03210 876 MNGCNN 881 (1153)
T ss_pred CCCCCC
Confidence 888875
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.7e-34 Score=312.90 Aligned_cols=283 Identities=25% Similarity=0.420 Sum_probs=214.4
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhH
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVEL 249 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~ 249 (1108)
|.++++|.++|.....+.++|+|+||||+||||||+.+|++..++.+|+.++|+.++...+...++..|+.++.......
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 81 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI 81 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 57889999999997799999999999999999999999988779999999999999999999999999999998774322
Q ss_pred -HHHhhcchHHHHHHHccCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhccccccccccchhHHhh
Q 048834 250 -EEKLLESPQTVVHNYLIHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRNLNFFGGDLNLSFKEM 328 (1108)
Q Consensus 250 -~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~~~~~~~~~~~~l~~ 328 (1108)
...+.+.....+++.|+++++||||||||+...|+.+...++.+..||+||||||+..|+..++.. ...|++..|+.
T Consensus 82 ~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~--~~~~~l~~L~~ 159 (287)
T PF00931_consen 82 SDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT--DKVIELEPLSE 159 (287)
T ss_dssp SCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC--EEEEECSS--H
T ss_pred ccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 223355678889999999999999999999999999998888888899999999999999877542 26788888888
Q ss_pred hccccccccccccCCCCcccccCCCccccccCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhc
Q 048834 329 KARYPLHEAVVVRNDDDVNTIRPHISVAEILGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYN 408 (1108)
Q Consensus 329 ~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~ 408 (1108)
+++|.||...++....
T Consensus 160 ~ea~~L~~~~~~~~~~---------------------------------------------------------------- 175 (287)
T PF00931_consen 160 EEALELFKKRAGRKES---------------------------------------------------------------- 175 (287)
T ss_dssp HHHHHHHHHHHTSHS-----------------------------------------------------------------
T ss_pred cccccccccccccccc----------------------------------------------------------------
Confidence 8888888655432100
Q ss_pred CccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCChhhHHHHHH
Q 048834 409 SSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLPGAWYELQR 488 (1108)
Q Consensus 409 ~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~ 488 (1108)
T Consensus 176 -------------------------------------------------------------------------------- 175 (287)
T PF00931_consen 176 -------------------------------------------------------------------------------- 175 (287)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHH
Q 048834 489 IFSPNTSSSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICV 568 (1108)
Q Consensus 489 ~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~ 568 (1108)
.........+.+|++.|+|+|+|+..
T Consensus 176 ------------------------------------------------------~~~~~~~~~~~~i~~~c~glPLal~~ 201 (287)
T PF00931_consen 176 ------------------------------------------------------ESPEDLEDLAKEIVEKCGGLPLALKL 201 (287)
T ss_dssp ---------------------------------------------------------TTSCTHHHHHHHHTTT-HHHHHH
T ss_pred ------------------------------------------------------cccccccccccccccccccccccccc
Confidence 00111123456789999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCchhhhhHHhhccccchHhHHHHH
Q 048834 569 LGGLLSTNRQIQNSDWEKVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDNLDASSIWGLGYKYLSAHLKACL 648 (1108)
Q Consensus 569 ~~~~l~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~l~~~~ 648 (1108)
+|++++.+.. ..+|....+.+.... .... . ....+..++..||+.|++.++.||
T Consensus 202 ~a~~l~~~~~--~~~w~~~~~~l~~~~-------------~~~~----------~-~~~~~~~~l~~s~~~L~~~~~~~f 255 (287)
T PF00931_consen 202 IASYLRSKST--VDEWEEALEELENSL-------------RESR----------D-YDRSVFSALELSYDSLPDELRRCF 255 (287)
T ss_dssp HHHHHHHHHS--SSSHHHHHHHHHHCH-------------TCSS----------G-SCHHHHHHHHHHHHSSHTCCHHHH
T ss_pred cccccccccc--ccccccccccccccc-------------cccc----------c-ccccccccceechhcCCccHHHHH
Confidence 9999966543 578888876544310 0000 0 112789999999999999999999
Q ss_pred hhhccCCCCcccchHHHHHHHHhcCcccCC
Q 048834 649 HYLCLFPKSHEIPVRRLLQLWLAERFVTPS 678 (1108)
Q Consensus 649 ~~~~~f~~~~~~~~~~l~~l~~~~~~~~~~ 678 (1108)
.+|++||.++.++.+.++++|.++||+...
T Consensus 256 ~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 256 LYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred hhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 999999999999999999999999998754
No 5
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-32 Score=325.99 Aligned_cols=621 Identities=24% Similarity=0.271 Sum_probs=378.3
Q ss_pred eeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcc-ccccCceeEEEEeccCCCcCHHHHHHHHHHHHh
Q 048834 366 VGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSY-IRQNFEYHAWANVDVSHDFDLRKVFINILEQVT 444 (1108)
Q Consensus 366 ~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~-~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~ 444 (1108)
+|.+..++++.+.+.+.+. .+++++||||+||||+|+.++|+.. ++.+|+..+|+. +|+.++..+++.+|+..++
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~--VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV--VSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE--EcccccHHhHHHHHHHHhc
Confidence 7999999999999988865 7999999999999999999999987 999999999999 9999999999999999988
Q ss_pred hhh-hhhhhhHHHHHHHHHHHhcCCceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEec
Q 048834 445 RVK-IAEELALNELESRLIRLFQSKRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREAFVARAFSPSIILLQL 523 (1108)
Q Consensus 445 ~~~-~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~ 523 (1108)
... .......+.+...+.+.|.++++++|+||||+..+|+.+...|| ....|++|++|||+..++....+....+++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p--~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP--SRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC--CccCCeEEEEEeccHhhhhccccCCccccc
Confidence 633 22233348899999999999999999999999999999999999 335789999999999999984444788999
Q ss_pred CCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCCChhHHHHHHhccCCCCCcchhhhh
Q 048834 524 RPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLLSTNRQIQNSDWEKVIEGFTPGGKKKEKQIQ 603 (1108)
Q Consensus 524 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 603 (1108)
+.|..++||++|.+.++. .. .+..|. +..+|+.+..++.+.+-....+...+.... +.+
T Consensus 315 ~~L~~~eaW~LF~~~v~~----~~-----------~~~~~~-i~~lak~v~~kC~GLPLAl~viG~~ma~K~-----t~~ 373 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGP----NT-----------LGSHPD-IEELAKEVAEKCGGLPLALNVLGGLLACKK-----TVQ 373 (889)
T ss_pred cccCccccHHHHHHhhcc----cc-----------cccccc-HHHHHHHHHHHhCChHHHHHHHHHHhcCCC-----cHH
Confidence 999999999999987642 10 111121 455666666666555556655655555522 111
Q ss_pred hhhhhcccccCCCCCCCCCCCCchhhhhHHhhc-cccchHhHHHHHhhhccCCCCcc-cchHHHHHHHHhcCcccCCCCC
Q 048834 604 HVEQVASDKDQSGSRDELPPSDNLDASSIWGLG-YKYLSAHLKACLHYLCLFPKSHE-IPVRRLLQLWLAERFVTPSEGE 681 (1108)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s-~~~l~~~l~~~~~~~~~f~~~~~-~~~~~l~~l~~~~~~~~~~~~~ 681 (1108)
+.+.+.+ .+... ....+......+..+. -.++ ++ ..+.+...-..++.....-
T Consensus 374 eW~~~~~---------------------~l~s~~~~~~~~~~~~i~~iLk---lSyd~L~-~~lK~CFLycalFPED~~I 428 (889)
T KOG4658|consen 374 EWRRALN---------------------VLKSSLAADFSGMEESILPILK---LSYDNLP-EELKSCFLYCALFPEDYEI 428 (889)
T ss_pred HHHHHHc---------------------cccccccCCCCchhhhhHHhhh---ccHhhhh-HHHHHHHHhhccCCccccc
Confidence 1111111 01000 0111111111111111 0111 21 2222222211111111111
Q ss_pred CCCHHHHHHHHHHHHHHccchhhhhcccC----Cc-----------eee-----cCCCCCCcccccccceEEee------
Q 048834 682 EMTPEDRARKDFEQLEQRNMIEVVKRRLS----EH-----------LYN-----QNDSVPPDEYIECLHSYLSF------ 735 (1108)
Q Consensus 682 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~-----------l~~-----~~~~~~~~~~~~~l~~ll~~------ 735 (1108)
..+. ...-.+.-++++....... |. +.. ....+.++..++.+......
T Consensus 429 --~~e~----Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~ 502 (889)
T KOG4658|consen 429 --KKEK----LIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE 502 (889)
T ss_pred --chHH----HHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc
Confidence 1111 1111122233332110000 00 001 11223333332222211111
Q ss_pred ------cc-cCCCCCc-hh---------HHHHHhhhhcccCCCeeEEEEeCCCC--CCCCc-hhhcCCCCccEEecCCc-
Q 048834 736 ------DK-RMGDKPA-DE---------VGNLLNKMINRRGYRLLRVLDLEGVY--KPVLP-ETVGKLQLLRYFGLRWT- 794 (1108)
Q Consensus 736 ------~~-~~~~~~~-~~---------~~~l~~~~~~~~~l~~Lr~L~L~~~~--~~~lp-~~i~~l~~L~~L~l~~~- 794 (1108)
.. .....|. .+ +.+.+..++....++.|+.|-+.++. +..++ ..|..++.|++|||++|
T Consensus 503 e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 503 ENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred cceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC
Confidence 10 1111111 00 12223344555677789999998875 55555 45888999999999988
Q ss_pred cccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCccccccccccccc--CCCCC
Q 048834 795 FLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIG--NKSPP 872 (1108)
Q Consensus 795 ~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~--~~~~~ 872 (1108)
.+.+||++|+.|.+||+|+|+++.+..+|.++++|.+|++|++..+...... +.....|.+|++|.+.... .....
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~ 660 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLL 660 (889)
T ss_pred ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc--cchhhhcccccEEEeeccccccchhh
Confidence 7889999999999999999999999999999999999999999887654433 4546669999999887664 22234
Q ss_pred hhhhccCcCCceeeeeecccchhhHHHHHhhcCCCc----EEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCC
Q 048834 873 LNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLE----SLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPL 948 (1108)
Q Consensus 873 ~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 948 (1108)
...+..+.+|+.|.+..... .+...+..+..|. .+.+.++... ....++..+.+|+.|.+.++--...
T Consensus 661 l~el~~Le~L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~-----~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 661 LKELENLEHLENLSITISSV---LLLEDLLGMTRLRSLLQSLSIEGCSKR-----TLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred HHhhhcccchhhheeecchh---HhHhhhhhhHHHHHHhHhhhhcccccc-----eeecccccccCcceEEEEcCCCchh
Confidence 55667777777777754332 1222222222222 3333222221 2244566778888888877632110
Q ss_pred C--------CCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeC---------CCCCCcccEE-E
Q 048834 949 K--------LDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCG---------DGGFPKLRVL-K 1010 (1108)
Q Consensus 949 ~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---------~~~~~~L~~L-~ 1010 (1108)
. ....++++..+.+.+|... ..+.+....|+|+.|.+..|...+..++.. .-.|.++..+ .
T Consensus 733 ~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~ 811 (889)
T KOG4658|consen 733 VIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRM 811 (889)
T ss_pred hcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccccee
Confidence 0 0001345556666666544 234444567888888888887665432210 1234444455 3
Q ss_pred eccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecC
Q 048834 1011 LWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDM 1061 (1108)
Q Consensus 1011 l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c 1061 (1108)
+.+.+.+.++-...-.+++|+.+.+..||++. .+|.+..+.+.+|
T Consensus 812 ~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~------~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 812 LCSLGGLPQLYWLPLSFLKLEELIVEECPKLG------KLPLLSTLTIVGC 856 (889)
T ss_pred eecCCCCceeEecccCccchhheehhcCcccc------cCccccccceecc
Confidence 44444444443333345668888888888776 1235556666666
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.6e-23 Score=269.09 Aligned_cols=290 Identities=27% Similarity=0.275 Sum_probs=144.7
Q ss_pred CeeEEEEeCCCCCC-CCchhhcCCCCccEEecCCcccc-ccccccCCCCCCcEEeccCCcCc-cCChhhccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKP-VLPETVGKLQLLRYFGLRWTFLD-SIPESVGDLPCLETLDLKHTNIT-SLPKSIWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l 837 (1108)
++|++|+|++|.+. .+|..++++.+|++|++++|.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 33555555555532 44555555555555555555433 45555555555555555555544 45555555555555555
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCC
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLND 917 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 917 (1108)
++|...+. .|..++++++|+.|++..+......+..+..+++|+.|+++.+... +.+|.++..+++|+.|++.+|..
T Consensus 244 ~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 244 VYNNLTGP--IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred cCceeccc--cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCCcEEECCCCcc
Confidence 55544332 2334555555555555554444444445555555555555544332 34444555555555555554443
Q ss_pred CCCCCccccCCCCCccCccceEeecc-----------------------------cCCCCCCCCCCCCcceEEEEeccCC
Q 048834 918 FGEPSDLVIGPLNNHRALNELYLLGK-----------------------------LPEPLKLDKLPPNLRILTLSLSYLS 968 (1108)
Q Consensus 918 ~~~~~~~~~~~~~~l~~L~~l~l~~~-----------------------------~~~~~~~~~~~~~L~~L~l~~~~~~ 968 (1108)
....+ ..+..+++|+.|.+.++ +|..+. .+++|+.|++++|.+.
T Consensus 321 ~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~---~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 321 TGKIP----VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC---SSGNLFKLILFSNSLE 393 (968)
T ss_pred CCcCC----hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh---CcCCCCEEECcCCEec
Confidence 32211 11223344444444332 111111 1134455555555554
Q ss_pred CCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCccc
Q 048834 969 EDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIEL 1047 (1108)
Q Consensus 969 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l 1047 (1108)
+.+|..++.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.....+|..+..+++|+.|++++|.... +|..+
T Consensus 394 ~~~p~~~~~~~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 394 GEIPKSLGACRSLRRVRLQDNSFSGE-LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred ccCCHHHhCCCCCCEEECcCCEeeeE-CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 44555555555555555555555432 33444555556666665555444444444555666666666666554 44333
Q ss_pred CCCCCCCEEEEecCc
Q 048834 1048 EKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1048 ~~l~~L~~L~l~~c~ 1062 (1108)
..++|+.|++++|.
T Consensus 473 -~~~~L~~L~ls~n~ 486 (968)
T PLN00113 473 -GSKRLENLDLSRNQ 486 (968)
T ss_pred -ccccceEEECcCCc
Confidence 23566666666665
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=8e-23 Score=262.53 Aligned_cols=337 Identities=24% Similarity=0.228 Sum_probs=216.3
Q ss_pred CCeeEEEEeCCCCCC-CCchhhcCCCCccEEecCCcccc-ccccccCCCCCCcEEeccCCcCc-cCChhhccccccCEEE
Q 048834 760 YRLLRVLDLEGVYKP-VLPETVGKLQLLRYFGLRWTFLD-SIPESVGDLPCLETLDLKHTNIT-SLPKSIWKVKTLRHLY 836 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~ 836 (1108)
+++|++|+|++|.+. .+|..++.+.+|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|+
T Consensus 211 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 334555555555543 34555555555555555555443 45555555555555555555444 4555555555566666
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|...+.. |..+.++++|+.|++..+......+..+..+++|+.|+++.+... +.+|..++.+++|+.|++++|.
T Consensus 291 Ls~n~l~~~~--p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 291 LSDNSLSGEI--PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred CcCCeeccCC--ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCc-CcCChHHhCCCCCcEEECCCCe
Confidence 5555443322 333555566666665555544455555666666666666655443 4556666666666666666655
Q ss_pred CCCCCCccccCCCCCccCccceEeecc-----cCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccc
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGK-----LPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSF 991 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 991 (1108)
.....+ ..+..+++|+.+.+.++ +|..+ ..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 368 l~~~~p----~~~~~~~~L~~L~l~~n~l~~~~p~~~---~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 440 (968)
T PLN00113 368 LTGEIP----EGLCSSGNLFKLILFSNSLEGEIPKSL---GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNL 440 (968)
T ss_pred eEeeCC----hhHhCcCCCCEEECcCCEecccCCHHH---hCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcc
Confidence 433221 12334567777777654 33322 2246999999999999988999999999999999999998
Q ss_pred cCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCchH-HHHHH
Q 048834 992 MGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMKKS-FEYEV 1069 (1108)
Q Consensus 992 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~~~-~~~~~ 1069 (1108)
.+. ++.....+++|+.|++++|.....+|... ..++|+.|++++|.... +|..+.++++|+.|++++|.-. ...+.
T Consensus 441 ~~~-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 518 (968)
T PLN00113 441 QGR-INSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518 (968)
T ss_pred cCc-cChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH
Confidence 774 55556789999999999998777777654 46899999999999887 8888999999999999999742 11111
Q ss_pred HhhccccceeeeCCCCCccccccccchhhhhhhcccccC
Q 048834 1070 RGSMAKTVNIVINPPQGKNRHWGETESSARHHKLLLESN 1108 (1108)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1108)
...+.......-+...+....-..+.+...+..|.|.+|
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557 (968)
T ss_pred HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence 222333333444444444433344556678888888776
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3.1e-24 Score=229.82 Aligned_cols=273 Identities=21% Similarity=0.188 Sum_probs=202.7
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccccc-CCCCCCcEEeccCCcCccCChhhccccccCEEEec
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESV-GDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMN 838 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 838 (1108)
+..|..|+||.|.+.+.|..+..-+++-+|+||+|+|+++|..+ -+|+.|-+|||++|.+..+|+.+..|.+||+|+++
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 44488888888888888888888888888888888888888764 47888888888888888888888888888888888
Q ss_pred cccccccccCCccccCcccccccccccccC-CCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCC
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLIGN-KSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLND 917 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 917 (1108)
+|..... .+ ..+..+++|..|.++.... ...+|.++..+.+|..++++++.. ..+|..+-++.+|+.|+|++|..
T Consensus 182 ~NPL~hf-QL-rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L--p~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 182 NNPLNHF-QL-RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL--PIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred CChhhHH-HH-hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC--CcchHHHhhhhhhheeccCcCce
Confidence 8754321 11 1133444555555554422 235566677777777777776655 46677777777777777776554
Q ss_pred CCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceee
Q 048834 918 FGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMT 997 (1108)
Q Consensus 918 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 997 (1108)
... .+ +. ....+|++|+++.|.++ .+|..+..++.|+.|.+.+|++.-+.+|
T Consensus 258 teL------------------~~--~~-------~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 258 TEL------------------NM--TE-------GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred eee------------------ec--cH-------HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 331 11 00 11148888888888877 6788888899999999988888777788
Q ss_pred eCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCchHH
Q 048834 998 CGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMKKSF 1065 (1108)
Q Consensus 998 ~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~~~~ 1065 (1108)
..+|.+..|+.+...++. ++-+|.+++.|+.|+.|.+..|...++|..+.-++.|+.|++..+|+..
T Consensus 310 SGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 888888899988888765 7778888889999999999988888899888888999999998888633
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=2.1e-21 Score=208.22 Aligned_cols=287 Identities=21% Similarity=0.198 Sum_probs=164.5
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCc--cCChhhccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNIT--SLPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~ 840 (1108)
++.|.|..+.+..+|+.++.|.+|+.|.+++|.+.++-..++.|+.||.+.++.|++. .+|..|.+|..|..|+++.|
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN 113 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh
Confidence 7777777777777777777777777777777766666666666677777777666555 56666777777777777666
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE 920 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 920 (1108)
... +.|.++..-+++-.|+++.+......-+-+.+++.|-.|+++.+.. +.+|..+..+.+|++|.|++|....
T Consensus 114 qL~---EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~h- 187 (1255)
T KOG0444|consen 114 QLR---EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL--EMLPPQIRRLSMLQTLKLSNNPLNH- 187 (1255)
T ss_pred hhh---hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh--hhcCHHHHHHhhhhhhhcCCChhhH-
Confidence 543 2355556666666666665554433333445556666666665544 5666666666666666666654321
Q ss_pred CCccccCCCCCccCccceEeecc------cCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCc
Q 048834 921 PSDLVIGPLNNHRALNELYLLGK------LPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGE 994 (1108)
Q Consensus 921 ~~~~~~~~~~~l~~L~~l~l~~~------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 994 (1108)
+.+..+..+++|+.|++++. +|.++... .||..++++.|.+. .+|..+-.+++|+.|+|++|.+++-
T Consensus 188 ---fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l---~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 188 ---FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL---HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred ---HHHhcCccchhhhhhhcccccchhhcCCCchhhh---hhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee
Confidence 11233444455555555553 23222111 24455555544443 3344444455555555555544331
Q ss_pred ---------------------eeeeCCCCCCcccEEEeccCC-CCCceeeCCCcccccceEeecccCCCCCCcccCCCCC
Q 048834 995 ---------------------EMTCGDGGFPKLRVLKLWVQK-ELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSS 1052 (1108)
Q Consensus 995 ---------------------~~~~~~~~~~~L~~L~l~~~~-~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~ 1052 (1108)
.+|..+..+++|+.|.+.++. ..+.+|.+++.+..|+.++..+|..--.|.++..|+.
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~k 340 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVK 340 (1255)
T ss_pred eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHH
Confidence 044445555666666655443 2234666666666666666665543336777777777
Q ss_pred CCEEEEecCc
Q 048834 1053 LKELTLTDMK 1062 (1108)
Q Consensus 1053 L~~L~l~~c~ 1062 (1108)
|+.|.++.+.
T Consensus 341 L~kL~L~~Nr 350 (1255)
T KOG0444|consen 341 LQKLKLDHNR 350 (1255)
T ss_pred HHHhcccccc
Confidence 7777775544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=4.3e-20 Score=188.88 Aligned_cols=330 Identities=21% Similarity=0.164 Sum_probs=166.4
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
+..|+.+.+++.++|+.++.+..|..|+.+.+.+.++|++|+.+-.|..|+..++++..+|.+++++.+|..|++.++..
T Consensus 93 l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l 172 (565)
T KOG0472|consen 93 LKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL 172 (565)
T ss_pred HHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccch
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444433
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPS 922 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 922 (1108)
... +...-.++.|++|+...+ ....+|+.++.+.+|..|++..+.. ..+| .+..+..|++|++..+....-+
T Consensus 173 ~~l---~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki--~~lP-ef~gcs~L~Elh~g~N~i~~lp- 244 (565)
T KOG0472|consen 173 KAL---PENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI--RFLP-EFPGCSLLKELHVGENQIEMLP- 244 (565)
T ss_pred hhC---CHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc--ccCC-CCCccHHHHHHHhcccHHHhhH-
Confidence 211 111112444444433221 1223444455555555555544433 2333 3444444455554433222211
Q ss_pred ccccCCCCCccCccceEeecc----cCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCc----
Q 048834 923 DLVIGPLNNHRALNELYLLGK----LPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGE---- 994 (1108)
Q Consensus 923 ~~~~~~~~~l~~L~~l~l~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---- 994 (1108)
...+..+++|..|++... +|.... ++.+|++|++++|.++ .+|.++|++ .|+.|-+.||++..-
T Consensus 245 ---ae~~~~L~~l~vLDLRdNklke~Pde~c---lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 245 ---AEHLKHLNSLLVLDLRDNKLKEVPDEIC---LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred ---HHHhcccccceeeeccccccccCchHHH---HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 112335666667777554 233332 2357889999998887 678888888 888888888865210
Q ss_pred -------------------eeee-----------C------CCCCCcccEEEeccCC-----------------------
Q 048834 995 -------------------EMTC-----------G------DGGFPKLRVLKLWVQK----------------------- 1015 (1108)
Q Consensus 995 -------------------~~~~-----------~------~~~~~~L~~L~l~~~~----------------------- 1015 (1108)
.+.. . ...+-..++|.+++-.
T Consensus 317 i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 317 ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecc
Confidence 0000 0 0112234444443321
Q ss_pred --CCCcee------------------------eCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCchHHHHHH
Q 048834 1016 --ELREWT------------------------IGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMKKSFEYEV 1069 (1108)
Q Consensus 1016 --~l~~lp------------------------~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~~~~~~~~ 1069 (1108)
.+.++| ..+..+++|..|++++|..-.+|..+..+..|+.|+++...-....++
T Consensus 397 kNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~ 476 (565)
T KOG0472|consen 397 KNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPEC 476 (565)
T ss_pred cchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHH
Confidence 011122 223468999999999999888999999999999999987643222222
Q ss_pred HhhccccceeeeCCCCCccccccccchhhhhhhcccccC
Q 048834 1070 RGSMAKTVNIVINPPQGKNRHWGETESSARHHKLLLESN 1108 (1108)
Q Consensus 1070 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1108)
--..........+-.++......-.-++.++..|.|++|
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence 111111111222223343333334456667777777665
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=4.5e-20 Score=188.78 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=70.4
Q ss_pred CccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCC----------------------CCCceee-CCCcc
Q 048834 971 PMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQK----------------------ELREWTI-GKEAM 1027 (1108)
Q Consensus 971 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~l~~lp~-~~~~l 1027 (1108)
+|..+..+++|..|+|++|.+.. +|...+.+-.|+.|+++.+. .+++++. ++.++
T Consensus 427 v~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 427 VPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred chHHHHhhhcceeeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 34455667788888887776655 66667777778888777653 1223332 36788
Q ss_pred cccceEeecccCCCCCCcccCCCCCCCEEEEecCchH
Q 048834 1028 PELRELEIRCCKKMKKPIELEKLSSLKELTLTDMKKS 1064 (1108)
Q Consensus 1028 ~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~~~ 1064 (1108)
.+|..|++.+|....+|..+++|.+|++|++.|.|-.
T Consensus 505 ~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999999999999999999999999999999954
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=2.6e-17 Score=176.41 Aligned_cols=293 Identities=20% Similarity=0.146 Sum_probs=146.8
Q ss_pred eEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 840 (1108)
-+.|++++|.+..+ +..|.++++|+.+++..|.+..+|.......+|++|+|.+|.|+.+-. .+.-++.|+.||++.|
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 45566666665544 445666666666666666666666655555666666666665554332 3555566666666665
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHH-HhhcCCCcEEEEEecCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKW-IQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~ 919 (1108)
.++. ++.+. +..-.++++|.+..+....--...+..+.+|-.|.++.+..+ .+|.. +.+++.|+.|.|..|....
T Consensus 160 ~is~-i~~~s-fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit--tLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 160 LISE-IPKPS-FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT--TLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhc-ccCCC-CCCCCCceEEeeccccccccccccccccchheeeecccCccc--ccCHHHhhhcchhhhhhccccceee
Confidence 4432 22222 333345555555554443333334444555555555554442 34332 2335555555554433221
Q ss_pred CCCccccC---------------------CCCCccCccceEeecccCC--CCCCCCCCCCcceEEEEeccCCCCCccccc
Q 048834 920 EPSDLVIG---------------------PLNNHRALNELYLLGKLPE--PLKLDKLPPNLRILTLSLSYLSEDPMPVLG 976 (1108)
Q Consensus 920 ~~~~~~~~---------------------~~~~l~~L~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 976 (1108)
..++.+. .+-.+.+++.|++.-.--. .-++.-.+.+|+.|++++|.+...-+..+.
T Consensus 236 -ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 -VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred -ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 1111111 1112333333333222100 001111124566666666655554555555
Q ss_pred cccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCCcccccceEeecccCCCC----CCcccCCCC
Q 048834 977 QLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMPELRELEIRCCKKMK----KPIELEKLS 1051 (1108)
Q Consensus 977 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~----lp~~l~~l~ 1051 (1108)
.+++|+.|+|+.|.+..- -+..+..+..|++|.++++. +..+.. .+..+.+|++|+++.|...- -...+..++
T Consensus 315 ftqkL~~LdLs~N~i~~l-~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRL-DEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hcccceeEeccccccccC-ChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccch
Confidence 566666666666655441 22334445556666666554 333322 23356777777777776543 122344577
Q ss_pred CCCEEEEecCc
Q 048834 1052 SLKELTLTDMK 1062 (1108)
Q Consensus 1052 ~L~~L~l~~c~ 1062 (1108)
+|++|.+.|++
T Consensus 393 ~LrkL~l~gNq 403 (873)
T KOG4194|consen 393 SLRKLRLTGNQ 403 (873)
T ss_pred hhhheeecCce
Confidence 88888888776
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=2.1e-17 Score=187.21 Aligned_cols=316 Identities=22% Similarity=0.278 Sum_probs=176.6
Q ss_pred cceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCC
Q 048834 729 LHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPC 808 (1108)
Q Consensus 729 l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~ 808 (1108)
|.++...++....+| ..+..+.+ |+.|+++.+.+..+|.+++++.+|++|+|.++.+..+|.++..+++
T Consensus 47 L~~l~lsnn~~~~fp-~~it~l~~----------L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFP-IQITLLSH----------LRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eEEeeccccccccCC-chhhhHHH----------HhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 444545555555555 34445555 8888888888888888888888888888888888888888888888
Q ss_pred CcEEeccCCcCccCChhhccccccCEEEecccccccc-----------------ccCCcccc------------------
Q 048834 809 LETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMS-----------------VQKPFVKY------------------ 853 (1108)
Q Consensus 809 L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~-----------------~~~~~~l~------------------ 853 (1108)
|.+|++++|.+..+|.-|..++.+..+.+++|..... ...+..+.
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence 8888888887777777666666555555554411000 00011111
Q ss_pred -CcccccccccccccCCC---------CC---------hhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEe
Q 048834 854 -SLTNLQTLWSLLIGNKS---------PP---------LNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRS 914 (1108)
Q Consensus 854 -~l~~L~~L~~~~~~~~~---------~~---------~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~ 914 (1108)
++.+|+.|....+.... .+ ...-..-.+|+.++++.+.. ..+|+|++.+.+|+.+.+..
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHHHhcccceEecccc
Confidence 22222222111100000 00 00000112455555554433 46788888888888888876
Q ss_pred cCCCCCCCcc------------------ccCCCCCccCccceEeecc----cCC--------------------------
Q 048834 915 LNDFGEPSDL------------------VIGPLNNHRALNELYLLGK----LPE-------------------------- 946 (1108)
Q Consensus 915 ~~~~~~~~~~------------------~~~~~~~l~~L~~l~l~~~----~~~-------------------------- 946 (1108)
+.....+... ..+.+..+..|+.|++... +|.
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 6553332211 1122334555666655321 111
Q ss_pred ---------------------CCCCCCCCCCcceEEEEeccCCCCCcc-ccccccccceeeeccccccCceeeeCCCCCC
Q 048834 947 ---------------------PLKLDKLPPNLRILTLSLSYLSEDPMP-VLGQLKELNILRLFAHSFMGEEMTCGDGGFP 1004 (1108)
Q Consensus 947 ---------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 1004 (1108)
.+......++|+.|+|++|.+. .+|. .+.+++.|+.|+|+||.+.. ++.....++
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~ 430 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT--LPDTVANLG 430 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhh
Confidence 0000111235555555555443 2222 23455555555555555544 445555566
Q ss_pred cccEEEeccCCCCCceeeCCCcccccceEeecccCCCC--CCcccCCCCCCCEEEEecCch
Q 048834 1005 KLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK--KPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1005 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~--lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
+|++|...++. +.++| .+..++.|+.++++.|.... +|....+ ++|++|+++|+.+
T Consensus 431 ~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 431 RLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 66666665554 45566 56678888899988777665 5555544 7899999999885
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.62 E-value=2.3e-16 Score=169.32 Aligned_cols=292 Identities=20% Similarity=0.136 Sum_probs=202.2
Q ss_pred eEEEEeCCCCCCCCc-hhhcCCC--CccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChhhccccccCEEEec
Q 048834 763 LRVLDLEGVYKPVLP-ETVGKLQ--LLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMN 838 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp-~~i~~l~--~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 838 (1108)
-+.|++++..+..+. +.+..+. .-++||+++|.+..+ +..|.++++|+.+++..|.++.+|...+-..+|+.|++.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 456677766665541 1222222 345699999988865 567889999999999999999999988888889999999
Q ss_pred cccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCC
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 918 (1108)
.|.+.... ...+.-++.|+.|+++.+....--...+..-.++++|+++.+... .--...+..+.+|..|.|+.|...
T Consensus 134 ~N~I~sv~--se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 134 HNLISSVT--SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred cccccccc--HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCccc
Confidence 98776443 455888999999999887665544456667789999999987654 111234566779999999998877
Q ss_pred CCCCccccCCCCCccCccceEeeccc---CCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCce
Q 048834 919 GEPSDLVIGPLNNHRALNELYLLGKL---PEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEE 995 (1108)
Q Consensus 919 ~~~~~~~~~~~~~l~~L~~l~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 995 (1108)
..|.. .+..+++|+.|++.... -.++.+.++ ++|+.|.+..|.+..---..+-++.++++|+|..|++..-
T Consensus 211 tLp~r----~Fk~L~~L~~LdLnrN~irive~ltFqgL-~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v- 284 (873)
T KOG4194|consen 211 TLPQR----SFKRLPKLESLDLNRNRIRIVEGLTFQGL-PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV- 284 (873)
T ss_pred ccCHH----HhhhcchhhhhhccccceeeehhhhhcCc-hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh-
Confidence 75543 45667888888875542 223333443 5888888887776544344455677788888877766542
Q ss_pred eeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCC-cccCCCCCCCEEEEecCch
Q 048834 996 MTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKP-IELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 996 ~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp-~~l~~l~~L~~L~l~~c~~ 1063 (1108)
-...+.++++|+.|+++++..-..=+.....+++|++|++++|...+++ ..+.-++.|++|+++++.-
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi 353 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI 353 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch
Confidence 2334556777888888777632222444556778888888887777743 3455566677777766653
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=7.4e-16 Score=174.89 Aligned_cols=329 Identities=23% Similarity=0.229 Sum_probs=201.7
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
|+.|+++++.+...|..|+.+.+|+.|+++.|.+.+.|.+++++.+|++|+|.++.+..+|.++..+++|+.|++++|.+
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f 126 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF 126 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCC-
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEP- 921 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~- 921 (1108)
. +.|..+..++.+..+...++..... ++... ++.+++..+... +.++..+..+.+ .|+|+.+......
T Consensus 127 ~---~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~-~~~~~~i~~l~~--~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 127 G---PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLG-GSFLIDIYNLTH--QLDLRYNEMEVLDL 195 (1081)
T ss_pred C---CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcc-cchhcchhhhhe--eeecccchhhhhhh
Confidence 4 3355566666666555444411111 11111 222332222111 223322222222 2333333222000
Q ss_pred Cccc-----------cC-CCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccc
Q 048834 922 SDLV-----------IG-PLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAH 989 (1108)
Q Consensus 922 ~~~~-----------~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 989 (1108)
.... +. --...++|+.|....+..........|.+|++++++.+.+. .+|.+++.+++|+.|....|
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHN 274 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccch
Confidence 0000 00 00012334444433332222233344568888888888776 56688888888888888777
Q ss_pred cccCc---------------------eeeeCCCCCCcccEEEeccCCCCCceeeC-------------------------
Q 048834 990 SFMGE---------------------EMTCGDGGFPKLRVLKLWVQKELREWTIG------------------------- 1023 (1108)
Q Consensus 990 ~~~~~---------------------~~~~~~~~~~~L~~L~l~~~~~l~~lp~~------------------------- 1023 (1108)
.+..- .++...+.+.+|++|++..+. +.++|..
T Consensus 275 ~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 275 RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 65321 123334557788888887654 4444311
Q ss_pred -------------------------CCcccccceEeecccCCCCCCc-ccCCCCCCCEEEEecCchHHHHHHHhhccccc
Q 048834 1024 -------------------------KEAMPELRELEIRCCKKMKKPI-ELEKLSSLKELTLTDMKKSFEYEVRGSMAKTV 1077 (1108)
Q Consensus 1024 -------------------------~~~l~~L~~L~i~~c~~l~lp~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~ 1077 (1108)
+.++.+|+.|++++|..-.+|. .+.+++.|++|+++|+.-.......+++.+.-
T Consensus 354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 1245677777777777666554 35667777788887777555555555555554
Q ss_pred eeeeCCCCCccccccccchhhhhhhcccc
Q 048834 1078 NIVINPPQGKNRHWGETESSARHHKLLLE 1106 (1108)
Q Consensus 1078 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1106 (1108)
....|-.++.+.. +...+.-+|.+.+.
T Consensus 434 tL~ahsN~l~~fP--e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP--ELAQLPQLKVLDLS 460 (1081)
T ss_pred HHhhcCCceeech--hhhhcCcceEEecc
Confidence 4444444443322 44555555555543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=5.3e-14 Score=166.14 Aligned_cols=95 Identities=17% Similarity=0.077 Sum_probs=54.1
Q ss_pred CCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEe
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELE 1034 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 1034 (1108)
++|+.|++++|.+. .+|.. .++|+.|+|++|.+.+ ++. ..++|+.|++++|. +..+|.. +.+|+.|+
T Consensus 362 ~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~--LP~---l~s~L~~LdLS~N~-LssIP~l---~~~L~~L~ 428 (788)
T PRK15387 362 SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS--LPV---LPSELKELMVSGNR-LTSLPML---PSGLLSLS 428 (788)
T ss_pred cccceehhhccccc-cCccc---ccccceEEecCCcccC--CCC---cccCCCEEEccCCc-CCCCCcc---hhhhhhhh
Confidence 45666666666554 23332 2456666666665543 222 13456666666664 4555542 34566666
Q ss_pred ecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 1035 IRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1035 i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+++|....+|..+.++++|+.|++++++
T Consensus 429 Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 429 VYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hccCcccccChHHhhccCCCeEECCCCC
Confidence 6666655566666666666666666665
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=1e-15 Score=138.46 Aligned_cols=162 Identities=20% Similarity=0.195 Sum_probs=137.9
Q ss_pred cCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEe
Q 048834 758 RGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYM 837 (1108)
Q Consensus 758 ~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 837 (1108)
..+.+...|.|+++.+..+|+.|..|.+|++|++.++.++++|.+|+.|++|++|+++-+.+..+|.++|.++-|+.|++
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCC
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLND 917 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 917 (1108)
..|..... ..|..+-.++.|+-|.+..+.. +.+|..++++++|+.|.+..+.. -++|..++.+..|++|++.++..
T Consensus 110 tynnl~e~-~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 110 TYNNLNEN-SLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccccccc-cCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHHHhccccee
Confidence 98876543 3456577788888887766544 35678889999999999887665 47899999999999999988876
Q ss_pred CCCCCc
Q 048834 918 FGEPSD 923 (1108)
Q Consensus 918 ~~~~~~ 923 (1108)
...|+.
T Consensus 186 ~vlppe 191 (264)
T KOG0617|consen 186 TVLPPE 191 (264)
T ss_pred eecChh
Confidence 655544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=7.3e-14 Score=166.42 Aligned_cols=244 Identities=17% Similarity=0.143 Sum_probs=124.9
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
...|+++++.+..+|..+. .+|+.|++++|.+..+|..+. .+|++|++++|+++.+|..+. .+|+.|++++|.+
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCcc
Confidence 4556666666666665443 356666666666666665543 366666666666666665443 3566666665543
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPS 922 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 922 (1108)
. .+ |..+. ++|+.|++..+... .++..+. .+|+.|++++|.. ..+|..+. ++|+.|.+++|.....
T Consensus 254 ~-~L--P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~L--t~LP~~lp--~sL~~L~Ls~N~Lt~L-- 319 (754)
T PRK15370 254 T-EL--PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSI--RTLPAHLP--SGITHLNVQSNSLTAL-- 319 (754)
T ss_pred C-cC--ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcc--ccCcccch--hhHHHHHhcCCccccC--
Confidence 3 11 11111 12333333222111 1121111 2344444443322 12222111 2344444443332211
Q ss_pred ccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCC
Q 048834 923 DLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGG 1002 (1108)
Q Consensus 923 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 1002 (1108)
|. .++++|+.|++++|.+.. +|..+ .++|+.|+|++|.+.. ++..+
T Consensus 320 ----------------------P~-----~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~--LP~~l-- 365 (754)
T PRK15370 320 ----------------------PE-----TLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV--LPETL-- 365 (754)
T ss_pred ----------------------Cc-----cccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc--CChhh--
Confidence 11 122467777777776653 45433 2577778887776653 33322
Q ss_pred CCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccC----CCCCCCEEEEecCch
Q 048834 1003 FPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELE----KLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1003 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~----~l~~L~~L~l~~c~~ 1063 (1108)
.++|+.|+|++|. +..+|..+ ..+|+.|++++|....+|..+. .++.+..|++.++|-
T Consensus 366 p~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 366 PPTITTLDVSRNA-LTNLPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred cCCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 3577888887775 55666543 2467788888877666665443 346677788877773
No 19
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.45 E-value=3e-13 Score=147.84 Aligned_cols=168 Identities=29% Similarity=0.469 Sum_probs=134.6
Q ss_pred ehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhh
Q 048834 368 LKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVK 447 (1108)
Q Consensus 368 ~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~ 447 (1108)
|+..+++|.+.+........++.|+|++|+|||++|..++.+..++.+|+...|+. .+...+...+...++.++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~--~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS--LSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE--EES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc--cccccccccccccccccccccc
Confidence 57789999999999767789999999999999999999998877999999999999 7777777888999999988764
Q ss_pred hh--hhhhHHHHHHHHHHHhcCCceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEecCC
Q 048834 448 IA--EELALNELESRLIRLFQSKRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREAFVARAFSPSIILLQLRP 525 (1108)
Q Consensus 448 ~~--~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~~~ 525 (1108)
.. ...+...+...+.+.+.++++|+|+||+|+...|+.+...++ ....+++|++|||...++..+......+++..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~--~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP--SFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H--CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccchhhhccccceeeeeeecccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 32 346677899999999999999999999999999988877665 34468999999999988876665467899999
Q ss_pred CChhhhHHHHhhhh
Q 048834 526 LNVDESWELFLKKV 539 (1108)
Q Consensus 526 L~~~~~~~lf~~~~ 539 (1108)
|+.++++++|.+.+
T Consensus 157 L~~~ea~~L~~~~~ 170 (287)
T PF00931_consen 157 LSEEEALELFKKRA 170 (287)
T ss_dssp --HHHHHHHHHHHH
T ss_pred cccccccccccccc
Confidence 99999999998864
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=6.6e-13 Score=156.99 Aligned_cols=241 Identities=18% Similarity=0.116 Sum_probs=154.3
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
|+.|++.+|.++.+|.. +++|++|++++|.+..+|.. ..+|++|++++|.++.+|.. .++|+.|++++|.+
T Consensus 224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~L 294 (788)
T PRK15387 224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQL 294 (788)
T ss_pred CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEECcCCcc
Confidence 77777777777777652 46777777777777777753 35677777777777766653 24566777777655
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPS 922 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 922 (1108)
.. . |. .+++|+.|+++.+... .++.. ..+|+.|.+++|.. ..+|.. ..+|+.|++++|.....|
T Consensus 295 t~-L--P~---~p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L--~~LP~l---p~~Lq~LdLS~N~Ls~LP- 358 (788)
T PRK15387 295 TS-L--PV---LPPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQL--TSLPTL---PSGLQELSVSDNQLASLP- 358 (788)
T ss_pred cc-c--cc---cccccceeECCCCccc-cCCCC---cccccccccccCcc--cccccc---ccccceEecCCCccCCCC-
Confidence 42 1 22 2356777766655332 22221 23566666766544 345531 247888888776655422
Q ss_pred ccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCC
Q 048834 923 DLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGG 1002 (1108)
Q Consensus 923 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 1002 (1108)
.. ..+|+.|.++++.-.. +...+++|+.|++++|.+. .+|.. .++|+.|++++|.+.+ +|. .
T Consensus 359 ~l-------p~~L~~L~Ls~N~L~~--LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss--IP~---l 420 (788)
T PRK15387 359 TL-------PSELYKLWAYNNRLTS--LPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS--LPM---L 420 (788)
T ss_pred CC-------Ccccceehhhcccccc--CcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC--CCc---c
Confidence 11 2345555555432111 1123468999999999876 35543 4689999999998865 443 2
Q ss_pred CCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCccc
Q 048834 1003 FPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIEL 1047 (1108)
Q Consensus 1003 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l 1047 (1108)
+.+|+.|+++++. +..+|..+..+++|+.|++++|+... .|..+
T Consensus 421 ~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4578899998876 77899988899999999999998876 44433
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=5.7e-13 Score=158.83 Aligned_cols=140 Identities=17% Similarity=0.159 Sum_probs=96.2
Q ss_pred eeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecccc
Q 048834 762 LLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 841 (1108)
+|+.|+|++|.+..+|..+. .+|++|++++|.+..+|..+. .+|+.|+|++|.+..+|..+. ++|+.|++++|.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 38888888888888887664 488888888888888887653 478888888888888887764 578888888776
Q ss_pred ccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
+.. . |..+. .+|+.|+++.+... .++..+. ++|+.|++++|.. ..+|..+ .++|+.|.+++|....
T Consensus 274 L~~-L--P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~L--t~LP~~l--~~sL~~L~Ls~N~Lt~ 339 (754)
T PRK15370 274 ISC-L--PENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSL--TALPETL--PPGLKTLEAGENALTS 339 (754)
T ss_pred cCc-c--ccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcc--ccCCccc--cccceeccccCCcccc
Confidence 542 2 33232 46777877766433 3333332 4678888887655 3455433 2578888888776443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=6.9e-14 Score=126.75 Aligned_cols=138 Identities=28% Similarity=0.333 Sum_probs=121.4
Q ss_pred eeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCc--cCChhhccccccCEEEecc
Q 048834 762 LLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNIT--SLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~ 839 (1108)
+|+.|+++++.++++|.+|+.+++|+.|++.-+.+..+|.+++.++-|+.|||+++++. .+|..+.-|+.|+.|++++
T Consensus 57 nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d 136 (264)
T KOG0617|consen 57 NLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD 136 (264)
T ss_pred hhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC
Confidence 39999999999999999999999999999999999999999999999999999999877 7999999999999999999
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLI 905 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~ 905 (1108)
|.+. -.|..+++|++|+.|.+..+... .+|..++.++.|++|++.++.. .-+|..++++.
T Consensus 137 ndfe---~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl--~vlppel~~l~ 196 (264)
T KOG0617|consen 137 NDFE---ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL--TVLPPELANLD 196 (264)
T ss_pred CCcc---cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee--eecChhhhhhh
Confidence 8664 24666999999999988766543 6788999999999999998766 46777776653
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=9.5e-13 Score=146.85 Aligned_cols=80 Identities=21% Similarity=0.171 Sum_probs=45.7
Q ss_pred eEEEEeCCCCCC-----CCchhhcCCCCccEEecCCccccc-------cccccCCCCCCcEEeccCCcCc-cCChhhccc
Q 048834 763 LRVLDLEGVYKP-----VLPETVGKLQLLRYFGLRWTFLDS-------IPESVGDLPCLETLDLKHTNIT-SLPKSIWKV 829 (1108)
Q Consensus 763 Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~-------lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l 829 (1108)
|++|++++|.+. .++..+...++|++|+++++.+.. ++..+.++.+|++|++++|.+. ..+..+..+
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 104 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL 104 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence 777777777652 245555666667777776654432 2344555666666666666554 333334444
Q ss_pred cc---cCEEEeccccc
Q 048834 830 KT---LRHLYMNDIYL 842 (1108)
Q Consensus 830 ~~---L~~L~l~~~~~ 842 (1108)
.+ |++|++++|..
T Consensus 105 ~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 105 LRSSSLQELKLNNNGL 120 (319)
T ss_pred hccCcccEEEeeCCcc
Confidence 43 66666666543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=8e-12 Score=139.35 Aligned_cols=262 Identities=22% Similarity=0.129 Sum_probs=123.4
Q ss_pred chhhcCCCCccEEecCCccc-----cccccccCCCCCCcEEeccCCcCcc-------CChhhccccccCEEEeccccccc
Q 048834 777 PETVGKLQLLRYFGLRWTFL-----DSIPESVGDLPCLETLDLKHTNITS-------LPKSIWKVKTLRHLYMNDIYLQM 844 (1108)
Q Consensus 777 p~~i~~l~~L~~L~l~~~~i-----~~lp~~i~~l~~L~~L~L~~~~l~~-------lp~~i~~l~~L~~L~l~~~~~~~ 844 (1108)
+..+..+.+|+.|++++|.+ ..++..+...++|++|+++++.+.. ++..+.++++|+.|++++|....
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 34444555566666666655 2345555555666666666653331 22344556666666666655432
Q ss_pred cccCCccccCccc---ccccccccccCCC----CChhhhccC-cCCceeeeeecccc---hhhHHHHHhhcCCCcEEEEE
Q 048834 845 SVQKPFVKYSLTN---LQTLWSLLIGNKS----PPLNWLESL-RGLKKLGLTCHIAS---LGQIAKWIQDLISLESLRLR 913 (1108)
Q Consensus 845 ~~~~~~~l~~l~~---L~~L~~~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~---~~~lp~~l~~l~~L~~L~l~ 913 (1108)
.. +..+..+.+ |++|++..+.... .+...+..+ ++|+.|+++++... ...++..+..+++|++|+++
T Consensus 96 ~~--~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~ 173 (319)
T cd00116 96 DG--CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA 173 (319)
T ss_pred hH--HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc
Confidence 11 122223333 6666665554331 122334444 56666666655433 12344445555566666666
Q ss_pred ecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCC----Cccccccccccceeeeccc
Q 048834 914 SLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSED----PMPVLGQLKELNILRLFAH 989 (1108)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~ 989 (1108)
+|.............+..+ ++|+.|++++|.+.+. +...+..+++|++|++++|
T Consensus 174 ~n~l~~~~~~~l~~~l~~~----------------------~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 174 NNGIGDAGIRALAEGLKAN----------------------CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred CCCCchHHHHHHHHHHHhC----------------------CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 6544321100000000001 2555555555544322 1222344566666666666
Q ss_pred cccCceeeeCCC----CCCcccEEEeccCCCC----CceeeCCCcccccceEeecccCCCC-----CCcccCCC-CCCCE
Q 048834 990 SFMGEEMTCGDG----GFPKLRVLKLWVQKEL----REWTIGKEAMPELRELEIRCCKKMK-----KPIELEKL-SSLKE 1055 (1108)
Q Consensus 990 ~~~~~~~~~~~~----~~~~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~i~~c~~l~-----lp~~l~~l-~~L~~ 1055 (1108)
.+....+..... ..+.|++|++.+|..- ..++..+..+++|+.|++++|.... +...+... +.|+.
T Consensus 232 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~ 311 (319)
T cd00116 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELES 311 (319)
T ss_pred cCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhh
Confidence 554311110001 2356677777666422 1122233345667777777766653 22222333 45666
Q ss_pred EEEecCc
Q 048834 1056 LTLTDMK 1062 (1108)
Q Consensus 1056 L~l~~c~ 1062 (1108)
|++.+.|
T Consensus 312 ~~~~~~~ 318 (319)
T cd00116 312 LWVKDDS 318 (319)
T ss_pred cccCCCC
Confidence 6665443
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.05 E-value=2.7e-12 Score=132.47 Aligned_cols=273 Identities=19% Similarity=0.106 Sum_probs=139.8
Q ss_pred eEEEEeCCCCCCCCch-hhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccC-CcCccCChh-hccccccCEEEec
Q 048834 763 LRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKH-TNITSLPKS-IWKVKTLRHLYMN 838 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~l~ 838 (1108)
-..+.|..|.|+.+|+ .|+.+++|+.|||++|.|+.+ |..+..|..|-.|-+.+ ++|+.+|.+ ++.|..||.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 4556666666666654 466677777777777766655 55566666666665555 567777665 5666666666665
Q ss_pred cccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchh-----------hHHHHHhhcCCC
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLG-----------QIAKWIQDLISL 907 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------~lp~~l~~l~~L 907 (1108)
-|.+.... ...+..|++|..|.+..+.....--..+..+..++.+.+.-+....+ ..|...+...-.
T Consensus 149 an~i~Cir--~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 149 ANHINCIR--QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred hhhhcchh--HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 55443211 23355666666666555543322222344445555554443221000 000000000000
Q ss_pred cEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCC---CCCCCCCCcceEEEEeccCCCCCcccccccccccee
Q 048834 908 ESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPL---KLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNIL 984 (1108)
Q Consensus 908 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 984 (1108)
....+...........-. ...+..+.+-..+.+.|... .....+++|+.|+|++|.+++.-..++.+...++.|
T Consensus 227 ~p~rl~~~Ri~q~~a~kf---~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKF---LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred chHHHHHHHhcccchhhh---hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 000000000000000000 00000000000011111111 112234688888888888887777778888888888
Q ss_pred eeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCC
Q 048834 985 RLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKM 1041 (1108)
Q Consensus 985 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l 1041 (1108)
.|..|++.. .-...+..++.|++|++.++..-.--|..+..+.+|..|.+-.||..
T Consensus 304 ~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 304 YLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888877643 12334567788888888887633334556667788888888776653
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.95 E-value=6e-11 Score=123.87 Aligned_cols=296 Identities=18% Similarity=0.121 Sum_probs=175.2
Q ss_pred eEEEEeCCCC---CCCCchhhcCCCCccEEecCCc-cccc--cccccCCCCCCcEEeccCC-cCc--cCChhhccccccC
Q 048834 763 LRVLDLEGVY---KPVLPETVGKLQLLRYFGLRWT-FLDS--IPESVGDLPCLETLDLKHT-NIT--SLPKSIWKVKTLR 833 (1108)
Q Consensus 763 Lr~L~L~~~~---~~~lp~~i~~l~~L~~L~l~~~-~i~~--lp~~i~~l~~L~~L~L~~~-~l~--~lp~~i~~l~~L~ 833 (1108)
||.|.++||. ...+-....++++++.|++.+| .++. +-+--..+.+|++|+|..| .++ .+-.....+++|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 8999999985 2334445677889999999888 4442 2122236889999999998 666 2222345678899
Q ss_pred EEEeccccccccccCCccccCcccccccccccccCCC--CChhhhccCcCCceeeeeec-ccchhhHHHHHhhcCCCcEE
Q 048834 834 HLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKS--PPLNWLESLRGLKKLGLTCH-IASLGQIAKWIQDLISLESL 910 (1108)
Q Consensus 834 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~lp~~l~~l~~L~~L 910 (1108)
+|++++|..............++.|+.+...+|...+ .+...=....-+.++++..+ ..+...+-..-..+..|+.|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l 299 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVL 299 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhh
Confidence 9999888543221111113344445555444433221 00000011112222332221 11111111112233455666
Q ss_pred EEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEecc-CCCCCccccc-cccccceeeecc
Q 048834 911 RLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSY-LSEDPMPVLG-QLKELNILRLFA 988 (1108)
Q Consensus 911 ~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~-~l~~L~~L~L~~ 988 (1108)
..++|...++..-. .+....++|+.|.++.|. +++.-...++ +++.|+.+++.+
T Consensus 300 ~~s~~t~~~d~~l~------------------------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 300 CYSSCTDITDEVLW------------------------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred cccCCCCCchHHHH------------------------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 66555543321110 111222577888887775 3332233343 688999999988
Q ss_pred ccccCce-eeeCCCCCCcccEEEeccCCCCCce-----eeCCCcccccceEeecccCCCC--CCcccCCCCCCCEEEEec
Q 048834 989 HSFMGEE-MTCGDGGFPKLRVLKLWVQKELREW-----TIGKEAMPELRELEIRCCKKMK--KPIELEKLSSLKELTLTD 1060 (1108)
Q Consensus 989 ~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l-----p~~~~~l~~L~~L~i~~c~~l~--lp~~l~~l~~L~~L~l~~ 1060 (1108)
|...... +.....++|.|+.|.+++|..+... ...-..+..|+.+++.+||.+. ....+..+++|+.+++.+
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 8654322 3333467899999999999876554 3333567889999999999987 566778899999999999
Q ss_pred CchHHHHHHHhhccccceeeeCCCCCccc
Q 048834 1061 MKKSFEYEVRGSMAKTVNIVINPPQGKNR 1089 (1108)
Q Consensus 1061 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1089 (1108)
|...+.+.+.. ...|+|.+++.
T Consensus 436 ~q~vtk~~i~~-------~~~~lp~i~v~ 457 (483)
T KOG4341|consen 436 CQDVTKEAISR-------FATHLPNIKVH 457 (483)
T ss_pred hhhhhhhhhHH-------HHhhCccceeh
Confidence 99988888877 34456666553
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.82 E-value=1.4e-10 Score=119.91 Aligned_cols=278 Identities=21% Similarity=0.125 Sum_probs=181.7
Q ss_pred CCCCCCCCchhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccC-ChhhccccccCEEEeccccccccc
Q 048834 769 EGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSL-PKSIWKVKTLRHLYMNDIYLQMSV 846 (1108)
Q Consensus 769 ~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~ 846 (1108)
++-.++++|..+- ..-..++|..|.|+.+|+. ++.+++||.|||+.|+|+.| |..+..|.+|..|-+.++......
T Consensus 54 r~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 54 RGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred cCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 3344556664332 2445688889999999864 78899999999999999955 556888999988888773333344
Q ss_pred cCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHH-HHhhcCCCcEEEEEecCCCCCCCccc
Q 048834 847 QKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAK-WIQDLISLESLRLRSLNDFGEPSDLV 925 (1108)
Q Consensus 847 ~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 925 (1108)
+ ...++.|..|+.|.+.-+...-.....+..+++|..|.+..+.. ..++. .+..+.+++.+++..+.+.-.
T Consensus 132 ~-k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~--q~i~~~tf~~l~~i~tlhlA~np~icd----- 203 (498)
T KOG4237|consen 132 P-KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI--QSICKGTFQGLAAIKTLHLAQNPFICD----- 203 (498)
T ss_pred h-hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh--hhhccccccchhccchHhhhcCccccc-----
Confidence 3 33488899999997776666666677888899999998886644 44554 556667777777766553321
Q ss_pred cCCCCCccCccce----E--eecc---cCC--------CCCCCCCCCCcceE--EE-EeccCCCCCc-ccccccccccee
Q 048834 926 IGPLNNHRALNEL----Y--LLGK---LPE--------PLKLDKLPPNLRIL--TL-SLSYLSEDPM-PVLGQLKELNIL 984 (1108)
Q Consensus 926 ~~~~~~l~~L~~l----~--l~~~---~~~--------~~~~~~~~~~L~~L--~l-~~~~~~~~~~-~~~~~l~~L~~L 984 (1108)
.+++.+... . .+|. .|. ...-..+..+++.+ .+ +.|......| ..+..+|+|+.|
T Consensus 204 ----CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 204 ----CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred ----cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 111111100 0 0110 000 00000011122222 11 2232222222 247789999999
Q ss_pred eeccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCc
Q 048834 985 RLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 985 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+|++|.++. .-...+.....|+.|.+..+. ++.+.. .+..+..|+.|++.+|.... .|..+..+.+|..|++-.+|
T Consensus 280 nlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 280 NLSNNKITR-IEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ccCCCccch-hhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 999998876 234556778899999998876 555433 35678999999999999988 68788888999999986433
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=7.5e-09 Score=100.16 Aligned_cols=106 Identities=24% Similarity=0.294 Sum_probs=35.6
Q ss_pred cccCCCeeEEEEeCCCCCCCCchhhc-CCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhh-ccccccC
Q 048834 756 NRRGYRLLRVLDLEGVYKPVLPETVG-KLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSI-WKVKTLR 833 (1108)
Q Consensus 756 ~~~~l~~Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~ 833 (1108)
...++..+|.|+|+|+.|..+. .++ .+.+|+.|++++|.+..++ ++..+++|+.|++++|.++.++..+ ..+++|+
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3344556999999999988874 565 6889999999999999886 5888999999999999999987766 4689999
Q ss_pred EEEeccccccccccCCccccCcccccccccc
Q 048834 834 HLYMNDIYLQMSVQKPFVKYSLTNLQTLWSL 864 (1108)
Q Consensus 834 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~ 864 (1108)
+|++++|.+..... ...+..+++|+.|++.
T Consensus 92 ~L~L~~N~I~~l~~-l~~L~~l~~L~~L~L~ 121 (175)
T PF14580_consen 92 ELYLSNNKISDLNE-LEPLSSLPKLRVLSLE 121 (175)
T ss_dssp EEE-TTS---SCCC-CGGGGG-TT--EEE-T
T ss_pred EEECcCCcCCChHH-hHHHHcCCCcceeecc
Confidence 99999887643221 1223344444444433
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.5e-09 Score=112.62 Aligned_cols=232 Identities=23% Similarity=0.197 Sum_probs=150.9
Q ss_pred hhcCCCCccEEecCCcccccccc--ccCCCCCCcEEeccCCcCc---cCChhhccccccCEEEeccccccccccCCcccc
Q 048834 779 TVGKLQLLRYFGLRWTFLDSIPE--SVGDLPCLETLDLKHTNIT---SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKY 853 (1108)
Q Consensus 779 ~i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~ 853 (1108)
-=.++.+|+...|++|.+...+. ....|++++.|||+.|-+. .+-.-+..|++|+.|+++.|.+.....
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~------ 189 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS------ 189 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc------
Confidence 34578889999999988887773 5667899999999988333 444456788889999888876542211
Q ss_pred CcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCcc
Q 048834 854 SLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHR 933 (1108)
Q Consensus 854 ~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 933 (1108)
+.. -..+++|+.|.++.|+.+...+-..+..+++|+.|.+..|........
T Consensus 190 s~~-------------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---------- 240 (505)
T KOG3207|consen 190 SNT-------------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---------- 240 (505)
T ss_pred ccc-------------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc----------
Confidence 000 014568888888888877677777778889999999988752211000
Q ss_pred CccceEeecccCCCCCCCCCCCCcceEEEEeccCCCC-CccccccccccceeeeccccccCceeeeC-----CCCCCccc
Q 048834 934 ALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSED-PMPVLGQLKELNILRLFAHSFMGEEMTCG-----DGGFPKLR 1007 (1108)
Q Consensus 934 ~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-----~~~~~~L~ 1007 (1108)
+ ...+..|+.|+|++|.+... .....+.||.|..|+++.|.+.+-..+.. ...||+|+
T Consensus 241 -----------~-----~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 241 -----------S-----TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred -----------h-----hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 0 11124678888887766532 22446788888888888887655323322 35688899
Q ss_pred EEEeccCCCCCceee--CCCcccccceEeecccCCCC---C--CcccCCCCCCCEEEEecCc
Q 048834 1008 VLKLWVQKELREWTI--GKEAMPELRELEIRCCKKMK---K--PIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1008 ~L~l~~~~~l~~lp~--~~~~l~~L~~L~i~~c~~l~---l--p~~l~~l~~L~~L~l~~c~ 1062 (1108)
.|.+..++ +..|+. .+..+++|+.|.+-+++.-+ . -.-+...++|..|+=.+|.
T Consensus 305 ~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~ 365 (505)
T KOG3207|consen 305 YLNISENN-IRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDIS 365 (505)
T ss_pred eeecccCc-cccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccC
Confidence 99988876 333443 24457788888877776554 1 1223455566555555554
No 30
>PF05729 NACHT: NACHT domain
Probab=98.65 E-value=3.2e-08 Score=98.20 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=80.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccC----CcceeEEEcCCCCCH---HHHHHHHHHHhCCCchhHHHHhhcchHHH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNH----FQCRAWFLVPPRLDK---RELAINILNQFAPTDVELEEKLLESPQTV 260 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~----F~~~~~~~~s~~~~~---~~l~~~i~~~~~~~~~~~~~~~~~~l~~~ 260 (1108)
+++.|+|.+|+||||+++.+..+-.-... |...+|++....... ..+...|..+.......... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE--------L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH--------H
Confidence 57899999999999999999854222222 344556655433222 24444444444322211111 1
Q ss_pred HHHH-ccCCeEEEEEcCCCChhh---------HhHhhh-hCCC-CCCCcEEEEEecchhhhhhccccccccccchhHHhh
Q 048834 261 VHNY-LIHKRYLVILTDVRTPDI---------WEIIKF-LFPN-SLSGSRVILSFREADAAMHRNLNFFGGDLNLSFKEM 328 (1108)
Q Consensus 261 l~~~-l~~kr~LlVLDDVw~~~~---------~~~l~~-~~~~-~~~GSrIiiTTR~~~Va~~~~~~~~~~~~~~~~l~~ 328 (1108)
+... -..+++++|||++++... +..+.. -+.. ..++.+||||+|..........-.....+.+.++++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 257899999999986322 222232 2222 357899999999887733211110115677778877
Q ss_pred hccccccc
Q 048834 329 KARYPLHE 336 (1108)
Q Consensus 329 ~~~~~Lf~ 336 (1108)
.+...++.
T Consensus 153 ~~~~~~~~ 160 (166)
T PF05729_consen 153 EDIKQYLR 160 (166)
T ss_pred HHHHHHHH
Confidence 77665553
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.1e-09 Score=109.16 Aligned_cols=181 Identities=19% Similarity=0.175 Sum_probs=95.1
Q ss_pred CCcEEeccCCcCc--cCChhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCcee
Q 048834 808 CLETLDLKHTNIT--SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKL 885 (1108)
Q Consensus 808 ~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L 885 (1108)
.|++|||+...++ .+-.-+..+.+|+.|.+.+. .....+...+..-.+|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~--------------------------~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL--------------------------RLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc--------------------------ccCcHHHHHHhccccceee
Confidence 4677777776555 33333444555555554443 3333344455566677777
Q ss_pred eeeecccc-hhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEe
Q 048834 886 GLTCHIAS-LGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSL 964 (1108)
Q Consensus 886 ~l~~~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~ 964 (1108)
+++.+.+. ...+-..+.+++.|..|+|+||............. ..++|+.|+|++
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h------------------------ise~l~~LNlsG 295 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH------------------------ISETLTQLNLSG 295 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh------------------------hchhhhhhhhhh
Confidence 77755332 23344456677888888888887665432221111 113555555555
Q ss_pred ccCC--CC-CccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee---CCCcccccceEeeccc
Q 048834 965 SYLS--ED-PMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI---GKEAMPELRELEIRCC 1038 (1108)
Q Consensus 965 ~~~~--~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~---~~~~l~~L~~L~i~~c 1038 (1108)
|... .. +......+|+|..|+|++|..........+-.|+.|++|.++.|..+ +|. .+...|+|.+|++.+|
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 4211 11 11122467777777777775554434344556777777777777644 222 2234455555555554
Q ss_pred CC
Q 048834 1039 KK 1040 (1108)
Q Consensus 1039 ~~ 1040 (1108)
-.
T Consensus 374 vs 375 (419)
T KOG2120|consen 374 VS 375 (419)
T ss_pred cC
Confidence 33
No 32
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.59 E-value=9.9e-08 Score=98.80 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=64.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC--CCHHHHHHHH-----HHHhCCCchhHHHHhhcchHHH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR--LDKRELAINI-----LNQFAPTDVELEEKLLESPQTV 260 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~--~~~~~l~~~i-----~~~~~~~~~~~~~~~~~~l~~~ 260 (1108)
..++|+|.+|+|||||++.+||+.... +|+.++|++++++ +++.++++.+ +.++.... .............
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~-~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPP-ERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCH-HHHHHHHHHHHHH
Confidence 349999999999999999999875444 9999999998877 8999999999 44444321 1111111222333
Q ss_pred HHHH-ccCCeEEEEEcCCCCh
Q 048834 261 VHNY-LIHKRYLVILTDVRTP 280 (1108)
Q Consensus 261 l~~~-l~~kr~LlVLDDVw~~ 280 (1108)
.+.. -.+++++|++|++-..
T Consensus 95 a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHh
Confidence 3322 3589999999998753
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.1e-08 Score=107.98 Aligned_cols=107 Identities=18% Similarity=0.245 Sum_probs=74.7
Q ss_pred CCCeeEEEEeCCCCCCCCch--hhcCCCCccEEecCCcccc---ccccccCCCCCCcEEeccCCcCccCChh--hccccc
Q 048834 759 GYRLLRVLDLEGVYKPVLPE--TVGKLQLLRYFGLRWTFLD---SIPESVGDLPCLETLDLKHTNITSLPKS--IWKVKT 831 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~~~l~~lp~~--i~~l~~ 831 (1108)
+++.||...|.+|.+...+. -...|++++.|||++|-+. .+-.-...|++|+.|+|+.|.+.....+ -..+..
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45569999999999888774 6788999999999998443 4445567899999999999977633322 346778
Q ss_pred cCEEEeccccccccccCCccccCcccccccccccc
Q 048834 832 LRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLI 866 (1108)
Q Consensus 832 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 866 (1108)
|+.|.+++|.++.. .....+..+++|..|++..+
T Consensus 199 lK~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWK-DVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHH-HHHHHHHhCCcHHHhhhhcc
Confidence 88889988877532 11122334455555555444
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.50 E-value=1.3e-08 Score=110.68 Aligned_cols=153 Identities=25% Similarity=0.255 Sum_probs=94.5
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
|..|.|..+.+-.+|..+++|..|.+|||+.|.+..+|..++.| -|+.|-+++|+++.+|..|+.+..|..|+.+.|..
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhh
Confidence 66666666666666666777777777777766666666666555 36666666666666776666666666666666644
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPS 922 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 922 (1108)
. ..+..++.|.+|+.|.+..+.. ..++..+.. -.|..|+++||.. ..+|-.+..+++|++|.|.+|....-+.
T Consensus 179 ~---slpsql~~l~slr~l~vrRn~l-~~lp~El~~-LpLi~lDfScNki--s~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 179 Q---SLPSQLGYLTSLRDLNVRRNHL-EDLPEELCS-LPLIRLDFSCNKI--SYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred h---hchHHhhhHHHHHHHHHhhhhh-hhCCHHHhC-CceeeeecccCce--eecchhhhhhhhheeeeeccCCCCCChH
Confidence 3 2344466666666665443322 234444442 2566677776665 3677777777777777777666555443
Q ss_pred c
Q 048834 923 D 923 (1108)
Q Consensus 923 ~ 923 (1108)
.
T Consensus 252 q 252 (722)
T KOG0532|consen 252 Q 252 (722)
T ss_pred H
Confidence 3
No 35
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.48 E-value=1.5e-07 Score=100.82 Aligned_cols=91 Identities=11% Similarity=0.086 Sum_probs=61.3
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC--CHHHHHHHHHHHhCCCchh-HHHHhh---cchHHHHHH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL--DKRELAINILNQFAPTDVE-LEEKLL---ESPQTVVHN 263 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~--~~~~l~~~i~~~~~~~~~~-~~~~~~---~~l~~~l~~ 263 (1108)
.+|+|++|+||||||+.|||+.... ||++++||++++.+ .+.++++++...+-....+ ...... ......-+.
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999864443 99999999999988 8888888886432211110 000000 111111122
Q ss_pred H-ccCCeEEEEEcCCCChh
Q 048834 264 Y-LIHKRYLVILTDVRTPD 281 (1108)
Q Consensus 264 ~-l~~kr~LlVLDDVw~~~ 281 (1108)
. -.+++++|++|++-...
T Consensus 251 ~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHcCCCEEEEEEChHHHH
Confidence 1 36899999999997543
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=3.8e-08 Score=98.19 Aligned_cols=130 Identities=22% Similarity=0.189 Sum_probs=69.8
Q ss_pred hccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeeccc-CCCCCCCCCC
Q 048834 876 LESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKL-PEPLKLDKLP 954 (1108)
Q Consensus 876 l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~ 954 (1108)
+.-.+.|+.|+++++.. ..+-+++.-.+.++.|+++.|.... ..++..+++|+.|++++.. ....++...+
T Consensus 280 ~dTWq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~------v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRT------VQNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred cchHhhhhhccccccch--hhhhhhhhhccceeEEeccccceee------ehhhhhcccceEeecccchhHhhhhhHhhh
Confidence 33446777888887655 4566666677788888887766544 2234445555555555542 1112222223
Q ss_pred CCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCC
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1015 (1108)
.|++.|.|+.|.+. ....++.+-+|.+|++++|++..-.-...+|++|+|++|.+.++|
T Consensus 352 GNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred cCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 45555655555432 123344455555666655554332223345555555555555555
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=6e-09 Score=113.20 Aligned_cols=145 Identities=21% Similarity=0.201 Sum_probs=106.1
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
-...+|+.+.+..+|..++.+..|+.|.|..|.+..+|..+.+|..|.+|+|+.|.+..+|..+..|+ |+.|-+++|++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 45678888999999999999999999999999999999999999999999999999999999998876 89998888766
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEec
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSL 915 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~ 915 (1108)
. ..|.+++-+..|.+|+.+.|.. ..++..++.+.+|+.|++..+.. ..+|..+..+ .|..|+++.|
T Consensus 156 ~---~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l--~~lp~El~~L-pLi~lDfScN 221 (722)
T KOG0532|consen 156 T---SLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHL--EDLPEELCSL-PLIRLDFSCN 221 (722)
T ss_pred c---cCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhh--hhCCHHHhCC-ceeeeecccC
Confidence 4 2355566667777776554433 23455555666666665554433 3455554432 2444554443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=2.9e-08 Score=101.99 Aligned_cols=235 Identities=21% Similarity=0.180 Sum_probs=135.1
Q ss_pred CCCeeEEEEeCCCCCCC-----CchhhcCCCCccEEecCCc----ccccccccc-------CCCCCCcEEeccCCcCc--
Q 048834 759 GYRLLRVLDLEGVYKPV-----LPETVGKLQLLRYFGLRWT----FLDSIPESV-------GDLPCLETLDLKHTNIT-- 820 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~----~i~~lp~~i-------~~l~~L~~L~L~~~~l~-- 820 (1108)
.+..+.+|+|+|+.+.. +-+.+.+.++|+.-+++.- ...++|+.+ -.+++|++||||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 34559999999987653 4456777789999998863 223566543 35678999999998544
Q ss_pred cCC---hhhccccccCEEEeccccccccccC-----------CccccCcccccccccccccCCC----CChhhhccCcCC
Q 048834 821 SLP---KSIWKVKTLRHLYMNDIYLQMSVQK-----------PFVKYSLTNLQTLWSLLIGNKS----PPLNWLESLRGL 882 (1108)
Q Consensus 821 ~lp---~~i~~l~~L~~L~l~~~~~~~~~~~-----------~~~l~~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L 882 (1108)
.++ .-|.++++|++|+|.+|.+...... ..-+++-++|+.+.+..+.... .+...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 222 2367789999999998866422100 0112334445554333322211 223345555666
Q ss_pred ceeeeeecccch---hhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcce
Q 048834 883 KKLGLTCHIASL---GQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRI 959 (1108)
Q Consensus 883 ~~L~l~~~~~~~---~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~ 959 (1108)
+.+.+..+.... ..+...+..+++|+.|+|++|.+...........++. +++|+.
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s----------------------~~~L~E 245 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS----------------------WPHLRE 245 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc----------------------cchhee
Confidence 666665443221 2334445566666666666655443322111111111 246777
Q ss_pred EEEEeccCCCCCcccc-----ccccccceeeeccccccCce---eeeCCCCCCcccEEEeccCC
Q 048834 960 LTLSLSYLSEDPMPVL-----GQLKELNILRLFAHSFMGEE---MTCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 960 L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~ 1015 (1108)
|.+++|.+...-...+ ..+|+|+.|.+.+|.++... +.......|.|+.|.|++|.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 7777776654322211 35788888888888765431 22234557888888888886
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.9e-09 Score=102.42 Aligned_cols=61 Identities=25% Similarity=0.125 Sum_probs=29.6
Q ss_pred CCcceEEEEeccC-CCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCC
Q 048834 955 PNLRILTLSLSYL-SEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 955 ~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1015 (1108)
|+|..|+|+.|.. .......+-.|+.|++|.++.|-.........+...|.|.+|++.+|-
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 3444444444422 222223344556666666655543322223345566667777766664
No 40
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.38 E-value=5.7e-08 Score=99.85 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=62.8
Q ss_pred hhhcCCCCccEEecCCcccc-----ccccccCCCCCCcEEeccCC---cCc-cCChhh-------ccccccCEEEecccc
Q 048834 778 ETVGKLQLLRYFGLRWTFLD-----SIPESVGDLPCLETLDLKHT---NIT-SLPKSI-------WKVKTLRHLYMNDIY 841 (1108)
Q Consensus 778 ~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~---~l~-~lp~~i-------~~l~~L~~L~l~~~~ 841 (1108)
+.+..+..+..++|+++.+. .+...+.+.++|+.-+++.- .+. .+|+.+ -..+.|++|+|++|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 45667889999999999776 45566778889999998864 222 566543 345689999999987
Q ss_pred ccccccC--CccccCcccccccccccccCCC
Q 048834 842 LQMSVQK--PFVKYSLTNLQTLWSLLIGNKS 870 (1108)
Q Consensus 842 ~~~~~~~--~~~l~~l~~L~~L~~~~~~~~~ 870 (1108)
+...... ..-+.++..|++|.+.+|+...
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~ 134 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGP 134 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCCh
Confidence 6533221 1124556667777666665543
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=2.8e-07 Score=105.76 Aligned_cols=154 Identities=25% Similarity=0.287 Sum_probs=115.2
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCC-CccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEec
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQ-LLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMN 838 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~-~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 838 (1108)
++.+..|++.++.+.++|+.++.+. +|+.|+++++.+..+|..++.+++|+.|+++.|.+..+|...+.+++|+.|+++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 3558999999999999998888885 999999999999999888899999999999999999999888889999999999
Q ss_pred cccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCC
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 918 (1108)
++.+.. .+..++.+..|..|.+..+. ....+..+..+.++..|.+..+.. ..++..+..+++++.|.++++...
T Consensus 195 ~N~i~~---l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~--~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 195 GNKISD---LPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred CCcccc---CchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee--eeccchhccccccceecccccccc
Confidence 887653 23334455667777666553 223445566667777777555433 344666777777888888776544
Q ss_pred C
Q 048834 919 G 919 (1108)
Q Consensus 919 ~ 919 (1108)
.
T Consensus 269 ~ 269 (394)
T COG4886 269 S 269 (394)
T ss_pred c
Confidence 3
No 42
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.28 E-value=3.1e-06 Score=97.08 Aligned_cols=138 Identities=13% Similarity=0.124 Sum_probs=83.3
Q ss_pred hhhhhhHHHhhhcC--CCCCceEeEEccCCCChhhHHHHhcCCcccccCC--cceeEEEcCCCCCHHHHHHHHHHHhCCC
Q 048834 170 NDEVKGLAELILSD--YPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF--QCRAWFLVPPRLDKRELAINILNQFAPT 245 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F--~~~~~~~~s~~~~~~~l~~~i~~~~~~~ 245 (1108)
+++.+++...+... +.....+-|+|++|+||||+++.++++ ..... -..+++......+...++..+++++...
T Consensus 36 e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~ 113 (394)
T PRK00411 36 EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGH 113 (394)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCC
Confidence 46666666666332 223344679999999999999999965 33332 2345555556667888999999998752
Q ss_pred chhHHHHhhcchHHHHHHHcc--CCeEEEEEcCCCChh------hHhHhhhhCCCCCCCcE--EEEEecchhhhh
Q 048834 246 DVELEEKLLESPQTVVHNYLI--HKRYLVILTDVRTPD------IWEIIKFLFPNSLSGSR--VILSFREADAAM 310 (1108)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDVw~~~------~~~~l~~~~~~~~~GSr--IiiTTR~~~Va~ 310 (1108)
.......+.+.....+.+.+. ++.++||||+++... .+..+..... ..++++ ||.++.+.++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 114 PPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhh
Confidence 211111112344455666664 456899999998642 2444433222 224555 566666655443
No 43
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.27 E-value=1.8e-06 Score=93.33 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=62.4
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC--CCHHHHHHHHHHHhCCCchh----HHHHhhcchHHHH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR--LDKRELAINILNQFAPTDVE----LEEKLLESPQTVV 261 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~--~~~~~l~~~i~~~~~~~~~~----~~~~~~~~l~~~l 261 (1108)
..++|+|.+|.|||||++.+++.... ++|+.++|+.+++. .++.++++.++..+-....+ ....-........
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 34999999999999999999976333 37999999999866 79999999995443221111 1000011222222
Q ss_pred HHH-ccCCeEEEEEcCCCCh
Q 048834 262 HNY-LIHKRYLVILTDVRTP 280 (1108)
Q Consensus 262 ~~~-l~~kr~LlVLDDVw~~ 280 (1108)
+.. -.|++++|++|++-..
T Consensus 248 e~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHcCCCeEEEEEChhHH
Confidence 222 3689999999999753
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=6.1e-07 Score=87.00 Aligned_cols=107 Identities=26% Similarity=0.305 Sum_probs=52.3
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccC-CCCCCcEEeccCCcCccCC--hhhccccccCEEE
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVG-DLPCLETLDLKHTNITSLP--KSIWKVKTLRHLY 836 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~ 836 (1108)
+.+|+.|+|++|.+.+++ .+..+.+|++|++++|.+..++..+. .+++|++|++++|++..+- ..+..+++|+.|+
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~ 119 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS 119 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence 556999999999999885 58889999999999999999976653 6899999999999777443 3477899999999
Q ss_pred ecccccccccc-CCccccCccccccccccccc
Q 048834 837 MNDIYLQMSVQ-KPFVKYSLTNLQTLWSLLIG 867 (1108)
Q Consensus 837 l~~~~~~~~~~-~~~~l~~l~~L~~L~~~~~~ 867 (1108)
+.+|....... -...+..+++|+.|+.....
T Consensus 120 L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 120 LEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp -TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred ccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 99987653211 12235567777777655443
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.25 E-value=4.9e-07 Score=93.88 Aligned_cols=122 Identities=15% Similarity=0.098 Sum_probs=76.9
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
..+-|||..|+|||+||+++.+. ...+.....|+...... .... .+.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~~~- 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFSP-----------------------AVLENLE- 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhhH-----------------------HHHhhcc-
Confidence 46889999999999999999965 33333445677653110 0000 0111222
Q ss_pred CeEEEEEcCCCC---hhhHh-HhhhhCCCC-CCCcEEEEEecch----------hhhhhccccccccccchhHHhhhccc
Q 048834 268 KRYLVILTDVRT---PDIWE-IIKFLFPNS-LSGSRVILSFREA----------DAAMHRNLNFFGGDLNLSFKEMKARY 332 (1108)
Q Consensus 268 kr~LlVLDDVw~---~~~~~-~l~~~~~~~-~~GSrIiiTTR~~----------~Va~~~~~~~~~~~~~~~~l~~~~~~ 332 (1108)
+.-+|||||+|. ..+|+ .+...+... ..|+.|||||.+. +++.++... ..++++.+++++.|
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDLTDEQKI 167 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCCCHHHHH
Confidence 224899999996 34575 333333322 3467776665543 566655443 68889999999999
Q ss_pred ccccccccc
Q 048834 333 PLHEAVVVR 341 (1108)
Q Consensus 333 ~Lf~~~a~~ 341 (1108)
.++...++.
T Consensus 168 ~iL~~~a~~ 176 (229)
T PRK06893 168 IVLQRNAYQ 176 (229)
T ss_pred HHHHHHHHH
Confidence 999887764
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.24 E-value=1.1e-06 Score=100.86 Aligned_cols=194 Identities=25% Similarity=0.182 Sum_probs=117.6
Q ss_pred EEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCC-CCcEEeccCCcCccCChhhccccccCEEEecccccc
Q 048834 765 VLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLP-CLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQ 843 (1108)
Q Consensus 765 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~ 843 (1108)
.|.+..+.+...+..+..+.++..|++.++.+..+|..+..+. +|+.|+++++.+..+|..++.+++|+.|++++|...
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5677777665566667777889999999999999999888885 999999999999999888999999999999988765
Q ss_pred ccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCc
Q 048834 844 MSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSD 923 (1108)
Q Consensus 844 ~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 923 (1108)
.. +...+.+++|+.|.+..+... .++..+.....|+.|.+..+.. ...+..+..+.++..+.+.++.....
T Consensus 177 ~l---~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~--- 247 (394)
T COG4886 177 DL---PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDL--- 247 (394)
T ss_pred hh---hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeec---
Confidence 32 222335556666655444322 2222223333455555554421 13333344444444444322221110
Q ss_pred cccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccC
Q 048834 924 LVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMG 993 (1108)
Q Consensus 924 ~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 993 (1108)
......+++++.|++++|.+.. ++. ++.+.+|+.|+++++.+..
T Consensus 248 ------------------------~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 248 ------------------------PESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ------------------------cchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccc
Confidence 0111122456667766666553 222 5666677777776665544
No 47
>PF13173 AAA_14: AAA domain
Probab=98.22 E-value=1.5e-06 Score=81.15 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=68.1
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
+++.|.|+-|+|||||++.++.+.. .....+|+...+........ .+ ....+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~------------------~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD------------------PD-LLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh------------------hh-hHHHHHHhhcc
Confidence 5799999999999999999885422 23445566554332211000 00 22223333444
Q ss_pred CeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhh
Q 048834 268 KRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMH 311 (1108)
Q Consensus 268 kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~ 311 (1108)
++.+|+||+|-....|......+-+..+..+|++|+.+......
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSK 104 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhh
Confidence 77889999999988887777776665677899999998877743
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=1.8e-07 Score=93.46 Aligned_cols=123 Identities=22% Similarity=0.184 Sum_probs=74.8
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
|..|||++|.|+.+-+++.-++.++.|++++|.+..+-. +..|.+|.+|||++|.++++-..=.+|-|..+|.+.+|.+
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhH
Confidence 777777777777777777777777777777777766644 6677777777777776666644445666777777766644
Q ss_pred cccccCCccccCcccccccccccccCCC-CChhhhccCcCCceeeeeec
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKS-PPLNWLESLRGLKKLGLTCH 890 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 890 (1108)
.. ..++++|-+|..|++..+.... .-...+++++.|+.|.+.++
T Consensus 365 E~----LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 365 ET----LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hh----hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 21 2234455555555554443322 12234555555555555444
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.2e-06 Score=69.27 Aligned_cols=57 Identities=33% Similarity=0.427 Sum_probs=37.4
Q ss_pred eeEEEEeCCCCCCCCch-hhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCc
Q 048834 762 LLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTN 818 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~ 818 (1108)
+|++|++++|.+..+|+ .+..+++|++|++++|.+..+|+ .+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 36777777777666653 55667777777777766666653 45666667777666664
No 50
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.14 E-value=2.6e-06 Score=80.48 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=76.0
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccC-----CcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNH-----FQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVH 262 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~-----F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~ 262 (1108)
+++.|+|.+|+||||+++.+.++ .... -...+|+......+...+...|+.++...... ..+.+.+...+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQ--LNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHH--HHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHH--hHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 56899999999999999999854 3322 23345888877779999999999999876543 112344556666
Q ss_pred HHccC-CeEEEEEcCCCCh---hhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 263 NYLIH-KRYLVILTDVRTP---DIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 263 ~~l~~-kr~LlVLDDVw~~---~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
+.+.. +..+||+||+..- ..++.|..... ..+-+||++-+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66654 4469999999765 33566655444 667778777654
No 51
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.10 E-value=7.7e-05 Score=85.54 Aligned_cols=207 Identities=17% Similarity=0.228 Sum_probs=120.7
Q ss_pred CCceeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHH
Q 048834 362 EAELVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINI 439 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~i 439 (1108)
+..++||+.+++++...+... ++.+..+.++|..|+|||++++.+++. +........|+.+......+...++..+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~--l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE--LEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 456789999999999988543 445667889999999999999999876 3322223445554466666677888888
Q ss_pred HHHHhhhh-hhhhhhHHHHHHHHHHHhc--CCceEEEEeCCCChh---hHHHHHHHhCCCCCCCCCE--EEEEcCchHHH
Q 048834 440 LEQVTRVK-IAEELALNELESRLIRLFQ--SKRYLIVLDDVHLPG---AWYELQRIFSPNTSSSGSR--VILLTREAFVA 511 (1108)
Q Consensus 440 l~~l~~~~-~~~~~~~~~l~~~l~~~l~--~k~~llvlDdv~~~~---~~~~l~~~~~~~~~~~~s~--iivttr~~~v~ 511 (1108)
+.++.... .....+...+...+.+.+. ++..++++|+++... ..+.+...+.......+++ ++.++....+.
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 88886522 1122345566666666664 456899999987632 1222332221001112323 45554443332
Q ss_pred HhcC------CCcceEecCCCChhhhHHHHhhhhcC----cCCch-HHHHHHHHHHHHcCCchhHHHHHH
Q 048834 512 RAFS------PSIILLQLRPLNVDESWELFLKKVGR----EKRAS-ELLNLKEKIWKKCGGLPLAICVLG 570 (1108)
Q Consensus 512 ~~~~------~~~~~~~~~~L~~~~~~~lf~~~~~~----~~~~~-~~~~~~~~i~~~~~glPlal~~~~ 570 (1108)
.... -....+.+.+++.++..+++...+.. ....+ .+..++.......+..+.++..+.
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 2211 11245688999999988888765421 11122 233333333333455666665554
No 52
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.06 E-value=2.7e-05 Score=75.47 Aligned_cols=119 Identities=10% Similarity=-0.012 Sum_probs=64.5
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHH
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELE 250 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~ 250 (1108)
.....+...+... ..+.+-|+|.+|+||||+|+.+++. ....-...+++..++..........+...
T Consensus 5 ~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 71 (151)
T cd00009 5 EAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANE--LFRPGAPFLYLNASDLLEGLVVAELFGHF--------- 71 (151)
T ss_pred HHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH--hhcCCCCeEEEehhhhhhhhHHHHHhhhh---------
Confidence 4445555555432 3456889999999999999999954 32222234455544433222211111100
Q ss_pred HHhhcchHHHHHHHccCCeEEEEEcCCCCh--h---hHhHhhhhCCCC---CCCcEEEEEecchh
Q 048834 251 EKLLESPQTVVHNYLIHKRYLVILTDVRTP--D---IWEIIKFLFPNS---LSGSRVILSFREAD 307 (1108)
Q Consensus 251 ~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~--~---~~~~l~~~~~~~---~~GSrIiiTTR~~~ 307 (1108)
............+..+||+||++.. . .+..+....... ..+.+||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112233456789999999963 2 232323333221 36788998888654
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=3.7e-06 Score=66.54 Aligned_cols=58 Identities=36% Similarity=0.490 Sum_probs=51.5
Q ss_pred CCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEecccc
Q 048834 784 QLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 784 ~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 841 (1108)
++|++|++++|.+..+|. .+..+++|++|++++|.++.+|+ .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999999985 67889999999999999998876 47899999999999875
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=9.2e-06 Score=97.53 Aligned_cols=84 Identities=30% Similarity=0.439 Sum_probs=72.8
Q ss_pred eEEEEeCCCCCC-CCchhhcCCCCccEEecCCcccc-ccccccCCCCCCcEEeccCCcCc-cCChhhccccccCEEEecc
Q 048834 763 LRVLDLEGVYKP-VLPETVGKLQLLRYFGLRWTFLD-SIPESVGDLPCLETLDLKHTNIT-SLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 763 Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~ 839 (1108)
++.|+|+++.+. .+|..++.|.+|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..+++|++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 888999988765 67888999999999999998776 78888999999999999999887 7888899999999999999
Q ss_pred ccccccc
Q 048834 840 IYLQMSV 846 (1108)
Q Consensus 840 ~~~~~~~ 846 (1108)
|.+.+..
T Consensus 500 N~l~g~i 506 (623)
T PLN03150 500 NSLSGRV 506 (623)
T ss_pred CcccccC
Confidence 8776554
No 55
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.03 E-value=2.4e-05 Score=84.41 Aligned_cols=99 Identities=16% Similarity=0.228 Sum_probs=62.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhH-HHHhhcchHHHHHHHc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVEL-EEKLLESPQTVVHNYL 265 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~l~~~l~~~l 265 (1108)
-.++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..++++.+...++.+.... .......+...+....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456999999999999999999965331 111 12233 3335677889999998876543211 1111223333333333
Q ss_pred -cCCeEEEEEcCCCCh--hhHhHhhh
Q 048834 266 -IHKRYLVILTDVRTP--DIWEIIKF 288 (1108)
Q Consensus 266 -~~kr~LlVLDDVw~~--~~~~~l~~ 288 (1108)
.+++++||+||++.. ..++.+..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~ 145 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRM 145 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHH
Confidence 678899999999974 35666654
No 56
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.00 E-value=3.1e-05 Score=87.84 Aligned_cols=109 Identities=9% Similarity=0.107 Sum_probs=67.7
Q ss_pred hhhhhhHHHhhhc--CCCCCceEeEEccCCCChhhHHHHhcCCcccccCCc------ceeEEEcCCCCCHHHHHHHHHHH
Q 048834 170 NDEVKGLAELILS--DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQ------CRAWFLVPPRLDKRELAINILNQ 241 (1108)
Q Consensus 170 ~~~~~~~~~~l~~--~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~------~~~~~~~s~~~~~~~l~~~i~~~ 241 (1108)
+++.++|..+|.. .+.....+-|+|++|+||||++++++++ .....+ ..+|+......+...++..|+++
T Consensus 21 e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 98 (365)
T TIGR02928 21 DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQ 98 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHH
Confidence 4677777777654 1223345899999999999999999964 322111 23455555556778899999998
Q ss_pred hCC--CchhHHHHhhcchHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 242 FAP--TDVELEEKLLESPQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 242 ~~~--~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
+.. ........+..+....+.+.+ .+++++||||+++.-
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 99 LRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 842 110000001122333444445 356899999999975
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.97 E-value=0.0001 Score=90.36 Aligned_cols=48 Identities=23% Similarity=0.321 Sum_probs=35.5
Q ss_pred CCceeeehHHHHHHHHHHhCC------CCceE-EEEEEcCCCChHHHHHHHHhcC
Q 048834 362 EAELVGLKDQLLRLAQLTMSS------SSKYF-LISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~------~~~~~-~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
...++|-+..++.+.+.+... .+.|. .+..+|+.|+|||.+|+.+...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 445677777778777777642 22343 5789999999999999998765
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=2.2e-06 Score=86.11 Aligned_cols=210 Identities=19% Similarity=0.104 Sum_probs=105.1
Q ss_pred CCccEEecCCccccccccc--c-CCCCCCcEEeccCCcCc---cCChhhccccccCEEEeccccccccccCCccccCccc
Q 048834 784 QLLRYFGLRWTFLDSIPES--V-GDLPCLETLDLKHTNIT---SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTN 857 (1108)
Q Consensus 784 ~~L~~L~l~~~~i~~lp~~--i-~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 857 (1108)
.-|+.|-+.+|.|...-.. + ...+.++.|||.+|.++ .+-.-+.+|+.|++|+++.|..... |+.++
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~------I~~lp- 117 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD------IKSLP- 117 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc------cccCc-
Confidence 3455566666655543322 2 24567778888887655 4444456777788887777654322 21111
Q ss_pred ccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccc
Q 048834 858 LQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNE 937 (1108)
Q Consensus 858 L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 937 (1108)
..+.+|+.|-+.+........-+.+..++.++.|+++.|+......+. -..-...+-+..
T Consensus 118 -------------------~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd-~c~e~~s~~v~t 177 (418)
T KOG2982|consen 118 -------------------LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD-NCIEDWSTEVLT 177 (418)
T ss_pred -------------------ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccc-ccccccchhhhh
Confidence 122344444444443333334444455555555555544221110000 000001234455
Q ss_pred eEeecccCC-C---CCCCCCCCCcceEEEEeccCCCC-CccccccccccceeeeccccccCceeeeCCCCCCcccEEEec
Q 048834 938 LYLLGKLPE-P---LKLDKLPPNLRILTLSLSYLSED-PMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLW 1012 (1108)
Q Consensus 938 l~l~~~~~~-~---~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~ 1012 (1108)
+++.+|.-. | ......+|++..+-+..|.+... .-.....+|.+-.|+|..+++.+..-...+..||.|.-|.+.
T Consensus 178 lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 178 LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVS 257 (418)
T ss_pred hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeecc
Confidence 555555210 0 12233446777777776655322 122344567777777777666553333455667777777777
Q ss_pred cCCCCCce
Q 048834 1013 VQKELREW 1020 (1108)
Q Consensus 1013 ~~~~l~~l 1020 (1108)
+.|.+..+
T Consensus 258 ~~Pl~d~l 265 (418)
T KOG2982|consen 258 ENPLSDPL 265 (418)
T ss_pred CCcccccc
Confidence 77755544
No 59
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.92 E-value=0.00097 Score=82.32 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.0
Q ss_pred ceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 385 KYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 385 ~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
.|.-+-++|.+|+|||++|+++.+.
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e 510 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATE 510 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3667889999999999999999876
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=3.7e-06 Score=100.14 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=107.1
Q ss_pred CCCeeEEEEeCCCC--CCCCchhhcC-CCCccEEecCCccc--cccccccCCCCCCcEEeccCCcCccCChhhccccccC
Q 048834 759 GYRLLRVLDLEGVY--KPVLPETVGK-LQLLRYFGLRWTFL--DSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLR 833 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~--~~~lp~~i~~-l~~L~~L~l~~~~i--~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 833 (1108)
.-.+|++|+++|.. ....|..++. |++|+.|.+++-.+ ..+-.-..++++|+.||+++|+++.+ .+|++|++||
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 34569999999954 3334556655 79999999988533 23334455789999999999999988 8899999999
Q ss_pred EEEeccccccccccCCccccCcccccccccccccCCCCC------hhhhccCcCCceeeeeecccchhhHHHHHhhcCCC
Q 048834 834 HLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPP------LNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISL 907 (1108)
Q Consensus 834 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L 907 (1108)
.|.+.+-.+.... ....+-+|++|+.|+++........ .+.-..+++|+.|+.+++....+.+-..+...++|
T Consensus 199 ~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 199 VLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 9998775443322 1234778999999988876544322 22233478999999988776644444445556677
Q ss_pred cEEEEEe
Q 048834 908 ESLRLRS 914 (1108)
Q Consensus 908 ~~L~l~~ 914 (1108)
+.+.+-+
T Consensus 278 ~~i~~~~ 284 (699)
T KOG3665|consen 278 QQIAALD 284 (699)
T ss_pred hhhhhhh
Confidence 7666543
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.89 E-value=5.9e-07 Score=94.61 Aligned_cols=264 Identities=19% Similarity=0.165 Sum_probs=150.8
Q ss_pred CCccEEecCCc-ccc--ccccccCCCCCCcEEeccCC-cCc--cCChhhccccccCEEEeccccccccccCCccccCccc
Q 048834 784 QLLRYFGLRWT-FLD--SIPESVGDLPCLETLDLKHT-NIT--SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTN 857 (1108)
Q Consensus 784 ~~L~~L~l~~~-~i~--~lp~~i~~l~~L~~L~L~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 857 (1108)
-.|+.|.++|| .+. .+-..-.+++++++|.+.+| +++ .+-.--..+.+|++|++..|.......+......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 36778888887 232 34444567889999999998 555 1212234678888888877654433322222334566
Q ss_pred ccccccccccCCCC--ChhhhccCcCCceeeeeecccc-hhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccC
Q 048834 858 LQTLWSLLIGNKSP--PLNWLESLRGLKKLGLTCHIAS-LGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRA 934 (1108)
Q Consensus 858 L~~L~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 934 (1108)
|.+|.++.|..... .-.....+..++.+.+.+|... ++.+...-+.+.-+.++++..|...++..-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---------- 287 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW---------- 287 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH----------
Confidence 66666666644332 1122233334444444433221 1111111112223344444444333321100
Q ss_pred ccceEeecccCCCCCCCCCCCCcceEEEEeccCCCC-Ccccc-ccccccceeeeccccccCc-eeeeCCCCCCcccEEEe
Q 048834 935 LNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSED-PMPVL-GQLKELNILRLFAHSFMGE-EMTCGDGGFPKLRVLKL 1011 (1108)
Q Consensus 935 L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~-~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l 1011 (1108)
.....+..|+.|+.++|..... ....+ .+.++|+.|.+++|+..+. .+..--.+.+.|+.|.+
T Consensus 288 --------------~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 288 --------------LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred --------------HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 0011124688888888855332 23334 3789999999999974332 22233357889999999
Q ss_pred ccCCCCCc--eeeCCCcccccceEeecccCCCC-C-----CcccCCCCCCCEEEEecCchHHHHHHHh
Q 048834 1012 WVQKELRE--WTIGKEAMPELRELEIRCCKKMK-K-----PIELEKLSSLKELTLTDMKKSFEYEVRG 1071 (1108)
Q Consensus 1012 ~~~~~l~~--lp~~~~~l~~L~~L~i~~c~~l~-l-----p~~l~~l~~L~~L~l~~c~~~~~~~~~~ 1071 (1108)
..|..... +-..-.++|.|+.|.++.|.... . -..-..+..|..+.+++||....+.+.-
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 99875543 22233478999999999998876 2 3344567789999999999755554443
No 62
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.87 E-value=9.7e-05 Score=87.93 Aligned_cols=151 Identities=16% Similarity=0.065 Sum_probs=85.8
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCc---ceeEEEcCC---CCCHHHHHHHHHHHh---------------CC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQ---CRAWFLVPP---RLDKRELAINILNQF---------------AP 244 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~---~~~~~~~s~---~~~~~~l~~~i~~~~---------------~~ 244 (1108)
....+.|+|.+|+||||+|+.+++..+....+. ..-|+.+.. ..+...+...++... +.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl 253 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGV 253 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCC
Confidence 345699999999999999999997654444442 234665532 123333322221110 10
Q ss_pred -------------Cch-hHHHHhh-cchHHHHHHHccCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEE--Eecc
Q 048834 245 -------------TDV-ELEEKLL-ESPQTVVHNYLIHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVIL--SFRE 305 (1108)
Q Consensus 245 -------------~~~-~~~~~~~-~~l~~~l~~~l~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIii--TTR~ 305 (1108)
... -.+...+ ...+..|.+.++.++++++.|+.|.. ..|+.+...+....+...|+| ||++
T Consensus 254 ~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~ 333 (615)
T TIGR02903 254 PEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRD 333 (615)
T ss_pred CchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccc
Confidence 000 0000001 12467788889999999998877754 348888877776666666666 6775
Q ss_pred hhhhh-hccccccccccchhHHhhhccccccccc
Q 048834 306 ADAAM-HRNLNFFGGDLNLSFKEMKARYPLHEAV 338 (1108)
Q Consensus 306 ~~Va~-~~~~~~~~~~~~~~~l~~~~~~~Lf~~~ 338 (1108)
..... ..... ...+.+.+++.+|.+.++...
T Consensus 334 ~~~l~~aLrSR--~~~i~~~pls~edi~~Il~~~ 365 (615)
T TIGR02903 334 PEEINPALRSR--CAEVFFEPLTPEDIALIVLNA 365 (615)
T ss_pred ccccCHHHHhc--eeEEEeCCCCHHHHHHHHHHH
Confidence 43211 11000 123455666677777776654
No 63
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.83 E-value=0.0013 Score=70.83 Aligned_cols=182 Identities=21% Similarity=0.238 Sum_probs=105.4
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhh--hhhHHHHHHHHHH
Q 048834 386 YFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAE--ELALNELESRLIR 463 (1108)
Q Consensus 386 ~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~--~~~~~~l~~~l~~ 463 (1108)
+..+.++|.+|+||||+++.+++.... ... ...|. .+...+..++...+...++...... ......+...+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~---~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL---VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee---eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 447889999999999999999876321 111 11222 2334566677777777765432211 1112233333333
Q ss_pred H-hcCCceEEEEeCCCC--hhhHHHHHHHhCC-CCCCCCCEEEEEcCchHHHHhcC---------CCcceEecCCCChhh
Q 048834 464 L-FQSKRYLIVLDDVHL--PGAWYELQRIFSP-NTSSSGSRVILLTREAFVARAFS---------PSIILLQLRPLNVDE 530 (1108)
Q Consensus 464 ~-l~~k~~llvlDdv~~--~~~~~~l~~~~~~-~~~~~~s~iivttr~~~v~~~~~---------~~~~~~~~~~L~~~~ 530 (1108)
. ..+++.++++||++. ...++.+.....- ........++++.... ...... .....+.+.+++.++
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 3 367889999999887 3456666543221 1111222334444332 221111 112356789999999
Q ss_pred hHHHHhhhhcCcC---CchHHHHHHHHHHHHcCCchhHHHHHHHHh
Q 048834 531 SWELFLKKVGREK---RASELLNLKEKIWKKCGGLPLAICVLGGLL 573 (1108)
Q Consensus 531 ~~~lf~~~~~~~~---~~~~~~~~~~~i~~~~~glPlal~~~~~~l 573 (1108)
..+++...+.... ...--.+....+.+.++|.|..+..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9998876553211 112234567778899999999998888765
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.8e-05 Score=56.90 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=14.3
Q ss_pred ccEEecCCccccccccccCCCCCCcEEeccCCcCc
Q 048834 786 LRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNIT 820 (1108)
Q Consensus 786 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~ 820 (1108)
|++|++++|.+..+|..+++|++|++|++++|.++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 44444444444444444444444444444444433
No 65
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.81 E-value=0.00069 Score=76.81 Aligned_cols=201 Identities=15% Similarity=0.156 Sum_probs=112.2
Q ss_pred CCceeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCccccccCce----eEEEEeccCCCcCHHHH
Q 048834 362 EAELVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY----HAWANVDVSHDFDLRKV 435 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~----~~w~~v~~s~~~~~~~l 435 (1108)
+..++||+.+++++...+... ++.+..+.++|.+|+|||++++.+++.. ...... ..++.+..........+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l--~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL--EEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH--HHHhhccCCceEEEEEECCCCCCHHHH
Confidence 346789999999999988753 4456788999999999999999998752 211110 22233225555666778
Q ss_pred HHHHHHHHhh--hh-hhhhhhHHHHHHHHHHHh--cCCceEEEEeCCCChh-hH-HHHHHHhCC--CCCC--CCCEEEEE
Q 048834 436 FINILEQVTR--VK-IAEELALNELESRLIRLF--QSKRYLIVLDDVHLPG-AW-YELQRIFSP--NTSS--SGSRVILL 504 (1108)
Q Consensus 436 ~~~il~~l~~--~~-~~~~~~~~~l~~~l~~~l--~~k~~llvlDdv~~~~-~~-~~l~~~~~~--~~~~--~~s~iivt 504 (1108)
+..++.++.. .. .....+..++...+.+.+ .++.+++++|+++... .. +.+...+.- .... ....++.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 8888888842 11 111123334444444444 3567899999987641 11 112222210 0111 22233444
Q ss_pred cCchHHHHhcC----C--CcceEecCCCChhhhHHHHhhhhcC----cCCchHHHHHHHHHHHHcCCchh
Q 048834 505 TREAFVARAFS----P--SIILLQLRPLNVDESWELFLKKVGR----EKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 505 tr~~~v~~~~~----~--~~~~~~~~~L~~~~~~~lf~~~~~~----~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
+.......... . ....+.+.+.+.++..+++...+.. ....+........++....|-+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R 241 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDAR 241 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHH
Confidence 43332221111 1 1245788899999988888765421 11233333344445555566653
No 66
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.8e-05 Score=56.97 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=35.6
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE 801 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~ 801 (1108)
++|++|++++|.+.++|+.+++|++|++|++++|.+..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35999999999999999999999999999999999887763
No 67
>PLN03150 hypothetical protein; Provisional
Probab=97.76 E-value=2.4e-05 Score=94.05 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=49.5
Q ss_pred CCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCc-ccccceE
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEA-MPELREL 1033 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L 1033 (1108)
++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+. ++..++.+++|+.|++++|.....+|..++. +.++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 4566666666666555665666666666666666655543 4445556666666666666544455554433 2345555
Q ss_pred eecccCCCC
Q 048834 1034 EIRCCKKMK 1042 (1108)
Q Consensus 1034 ~i~~c~~l~ 1042 (1108)
++.+|+.+.
T Consensus 521 ~~~~N~~lc 529 (623)
T PLN03150 521 NFTDNAGLC 529 (623)
T ss_pred EecCCcccc
Confidence 666555544
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00015 Score=79.25 Aligned_cols=161 Identities=13% Similarity=0.125 Sum_probs=93.5
Q ss_pred hhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCC
Q 048834 875 WLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLP 954 (1108)
Q Consensus 875 ~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 954 (1108)
.+..+.++..|+++.|.. ..+|. -.++|++|.+++|......+.. + +++|+.|.+++|. .+..+|
T Consensus 47 r~~~~~~l~~L~Is~c~L--~sLP~---LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs----~L~sLP 111 (426)
T PRK15386 47 QIEEARASGRLYIKDCDI--ESLPV---LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCP----EISGLP 111 (426)
T ss_pred HHHHhcCCCEEEeCCCCC--cccCC---CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCcc----cccccc
Confidence 355568888888887733 56662 2347899999887766544321 1 3578888887762 122456
Q ss_pred CCcceEEEEeccCCCCCccccccc-cccceeeecccccc-CceeeeCCCCC-CcccEEEeccCCCCCceeeCCCcccccc
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQL-KELNILRLFAHSFM-GEEMTCGDGGF-PKLRVLKLWVQKELREWTIGKEAMPELR 1031 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~l~~lp~~~~~l~~L~ 1031 (1108)
++|+.|.+..+... . ++.+ ++|+.|.+.++... ....+ ..+ ++|++|.+.+|..+. +|..+ ..+|+
T Consensus 112 ~sLe~L~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk 180 (426)
T PRK15386 112 ESVRSLEIKGSATD-S----IKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKL--PESLQ 180 (426)
T ss_pred cccceEEeCCCCCc-c----cccCcchHhheeccccccccccccc---cccCCcccEEEecCCCccc-Ccccc--cccCc
Confidence 78888887644321 1 2223 35777777543211 10011 123 579999998888553 44432 36888
Q ss_pred eEeecccC--CCCCCc-ccCCCCCCCEEEEecCchH
Q 048834 1032 ELEIRCCK--KMKKPI-ELEKLSSLKELTLTDMKKS 1064 (1108)
Q Consensus 1032 ~L~i~~c~--~l~lp~-~l~~l~~L~~L~l~~c~~~ 1064 (1108)
.|.++.|. .+.++. .+. +++ .|.+.+|...
T Consensus 181 ~L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~lkL 213 (426)
T PRK15386 181 SITLHIEQKTTWNISFEGFP--DGL-DIDLQNSVLL 213 (426)
T ss_pred EEEecccccccccCcccccc--ccc-Eechhhhccc
Confidence 88887754 223221 221 455 7888888543
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.73 E-value=5.2e-06 Score=95.22 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=37.1
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
+..++++.+.+.+.-..++.+.+|..|++.++.+..+...+..+++|++|++++|.|+.+ .++..++.|+.|++.+|.+
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcc
Confidence 333334444444433334445555555555555544444344455555555555554444 2344444455555555443
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.69 E-value=5.4e-05 Score=86.43 Aligned_cols=122 Identities=6% Similarity=0.012 Sum_probs=68.1
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
....+-|+|++|+||||||+.+.+. .... |+.++... +... .+++++.+. ...
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~--~~~~-----~~~l~a~~~~~~~-ir~ii~~~~------------------~~~ 88 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGA--TDAP-----FEALSAVTSGVKD-LREVIEEAR------------------QRR 88 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hCCC-----EEEEecccccHHH-HHHHHHHHH------------------Hhh
Confidence 3456788999999999999999854 3222 33333221 1211 122222211 011
Q ss_pred ccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEE--ecchhhh--hhccccccccccchhHHhhhccccccccc
Q 048834 265 LIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILS--FREADAA--MHRNLNFFGGDLNLSFKEMKARYPLHEAV 338 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiT--TR~~~Va--~~~~~~~~~~~~~~~~l~~~~~~~Lf~~~ 338 (1108)
..+++.+|++||++. ..+.+.|...+. .|+.++|. |.+.... ...... ...+.+.+++.++.+.++...
T Consensus 89 ~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR--~~~~~~~~ls~e~i~~lL~~~ 163 (413)
T PRK13342 89 SAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSR--AQVFELKPLSEEDIEQLLKRA 163 (413)
T ss_pred hcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhcc--ceeeEeCCCCHHHHHHHHHHH
Confidence 246788999999986 445667666553 35666653 3332211 111111 145677778888887777653
No 71
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00011 Score=78.20 Aligned_cols=124 Identities=10% Similarity=0.085 Sum_probs=73.2
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHH
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDVELEEKLLESPQTVVHN 263 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 263 (1108)
..+.-.-.||++|+||||||+.|-.. .... |..+|-.. +++++ ++++++. -+.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~-----f~~~sAv~~gvkdl-r~i~e~a------------------~~~ 99 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT--TNAA-----FEALSAVTSGVKDL-REIIEEA------------------RKN 99 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh--hCCc-----eEEeccccccHHHH-HHHHHHH------------------HHH
Confidence 34555778999999999999999843 3333 44555443 33333 3333331 122
Q ss_pred HccCCeEEEEEcCCC--ChhhHhHhhhhCCCCCCCcEEEE--EecchhhhhhccccccccccchhHHhhhcccccccc
Q 048834 264 YLIHKRYLVILTDVR--TPDIWEIIKFLFPNSLSGSRVIL--SFREADAAMHRNLNFFGGDLNLSFKEMKARYPLHEA 337 (1108)
Q Consensus 264 ~l~~kr~LlVLDDVw--~~~~~~~l~~~~~~~~~GSrIii--TTR~~~Va~~~~~~~~~~~~~~~~l~~~~~~~Lf~~ 337 (1108)
...|+|.+|.+|.|- +..|=+.++.. -..|.-|+| ||-+....-.-..-.--.+|.+++|+.+|--.+..+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~---vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPH---VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhh---hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 345899999999996 44555555543 456888887 555433211100000126778888887776555544
No 72
>PF05729 NACHT: NACHT domain
Probab=97.64 E-value=0.00057 Score=67.50 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=80.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc----CceeEEEEeccCCCcCHH-HHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQN----FEYHAWANVDVSHDFDLR-KVFINILEQVTRVKIAEELALNELESRL 461 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~----f~~~~w~~v~~s~~~~~~-~l~~~il~~l~~~~~~~~~~~~~l~~~l 461 (1108)
+++.|.|.+|+|||++++.++....-... +....|............ .+...+....... ....... ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~--~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEEL--LQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHHH--HH
Confidence 36889999999999999998765312221 334445552111111111 2222222222211 1111111 11
Q ss_pred HHHhcCCceEEEEeCCCChhh---------HH-HHHHHhCCCCCCCCCEEEEEcCchHHHH--hcCCCcceEecCCCChh
Q 048834 462 IRLFQSKRYLIVLDDVHLPGA---------WY-ELQRIFSPNTSSSGSRVILLTREAFVAR--AFSPSIILLQLRPLNVD 529 (1108)
Q Consensus 462 ~~~l~~k~~llvlDdv~~~~~---------~~-~l~~~~~~~~~~~~s~iivttr~~~v~~--~~~~~~~~~~~~~L~~~ 529 (1108)
.-.-..+++++++|+++.... +. .+...+. ....++.++++|+|...... ..-.....+.+.+++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLP-QALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhh-hccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 112257899999999875221 21 2333333 22336899999999876622 22223367899999999
Q ss_pred hhHHHHhhhh
Q 048834 530 ESWELFLKKV 539 (1108)
Q Consensus 530 ~~~~lf~~~~ 539 (1108)
+..+++.+.+
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9998887765
No 73
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.63 E-value=6.3e-05 Score=79.44 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=77.1
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHH------------
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAIN------------ 237 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~------------ 237 (1108)
+.+.+.|.+++..+ ....+.|+|..|+|||||++.+.+. .+..-...+|+...+......+..-
T Consensus 5 ~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 5 EKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred HHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 47788888888754 3566999999999999999999853 3221113445444443322221111
Q ss_pred -HHHHhCCCch-----hHHHHhhcchHHHHHHHc-cCCeEEEEEcCCCChh----h----HhHhhhhCCC--CCCCcEEE
Q 048834 238 -ILNQFAPTDV-----ELEEKLLESPQTVVHNYL-IHKRYLVILTDVRTPD----I----WEIIKFLFPN--SLSGSRVI 300 (1108)
Q Consensus 238 -i~~~~~~~~~-----~~~~~~~~~l~~~l~~~l-~~kr~LlVLDDVw~~~----~----~~~l~~~~~~--~~~GSrIi 300 (1108)
+...+..... .........+...+...- .+++++||+||+.... . ...+...+.. ....-.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 160 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV 160 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE
Confidence 1111111100 000111222223233222 2356999999997654 1 2233322221 12233444
Q ss_pred EEecchhhhhh-cc----ccccccccchhHHhhhccccccccc
Q 048834 301 LSFREADAAMH-RN----LNFFGGDLNLSFKEMKARYPLHEAV 338 (1108)
Q Consensus 301 iTTR~~~Va~~-~~----~~~~~~~~~~~~l~~~~~~~Lf~~~ 338 (1108)
+++-+..+... .+ .......+.+++++.+++++++...
T Consensus 161 ~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~ 203 (234)
T PF01637_consen 161 ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKEL 203 (234)
T ss_dssp EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHH
T ss_pred EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHH
Confidence 55444444432 00 0001234888999999999888653
No 74
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.61 E-value=7.3e-05 Score=75.53 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=29.4
Q ss_pred hhhhhhHHHhh-hcCCCCCceEeEEccCCCChhhHHHHhcCCcccccC
Q 048834 170 NDEVKGLAELI-LSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNH 216 (1108)
Q Consensus 170 ~~~~~~~~~~l-~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~ 216 (1108)
+++.+++...| .......+++-|+|.+|+|||||.++++ .++...
T Consensus 6 ~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~--~~~~~~ 51 (185)
T PF13191_consen 6 EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALL--DRLAER 51 (185)
T ss_dssp HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHH--HHHHhc
Confidence 57778888877 3344556889999999999999999998 445544
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=8.1e-05 Score=81.34 Aligned_cols=134 Identities=23% Similarity=0.171 Sum_probs=85.7
Q ss_pred CCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCc-cccccccccCCCCCCcEEeccCC-cCccCChhhccccccCEEE
Q 048834 759 GYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWT-FLDSIPESVGDLPCLETLDLKHT-NITSLPKSIWKVKTLRHLY 836 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~ 836 (1108)
.++++++|++++|.+..+|. -..+|+.|.+++| .+..+|..+ ..+|++|++++| .+..+|.. |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 35779999999999999983 2347999999987 778888766 368999999999 88888864 56666
Q ss_pred eccccccccccCCccccCcccccccccccccCC--CCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEe
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNK--SPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRS 914 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~ 914 (1108)
+..+.......+|. +|+.|.+...... ...+.. -.++|+.|.+++|... .+|..+. .+|+.|.++.
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i--~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI--ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc--cCccccc--ccCcEEEecc
Confidence 65543322122232 4555554322111 111111 1258999999876542 3343222 5889999876
Q ss_pred c
Q 048834 915 L 915 (1108)
Q Consensus 915 ~ 915 (1108)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 76
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.59 E-value=1.4e-05 Score=91.71 Aligned_cols=244 Identities=26% Similarity=0.163 Sum_probs=148.1
Q ss_pred cCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCcccccc
Q 048834 781 GKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQT 860 (1108)
Q Consensus 781 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 860 (1108)
..+..++.++++.+.+...-..+..+++|..|++.++.+..+...+..+.+|++|++++|.+.... .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~----~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE----GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc----chhhccchhh
Confidence 456677777788888887656688899999999999999988766899999999999999876433 3667777888
Q ss_pred cccccccCCCCChhhhccCcCCceeeeeecccchhhHHHH-HhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceE
Q 048834 861 LWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKW-IQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELY 939 (1108)
Q Consensus 861 L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~ 939 (1108)
|++..+... ....+..+.+|+.++++++... .+... +..+.+|+.+.+.++...... .+..+..+..+.
T Consensus 145 L~l~~N~i~--~~~~~~~l~~L~~l~l~~n~i~--~ie~~~~~~~~~l~~l~l~~n~i~~i~------~~~~~~~l~~~~ 214 (414)
T KOG0531|consen 145 LNLSGNLIS--DISGLESLKSLKLLDLSYNRIV--DIENDELSELISLEELDLGGNSIREIE------GLDLLKKLVLLS 214 (414)
T ss_pred heeccCcch--hccCCccchhhhcccCCcchhh--hhhhhhhhhccchHHHhccCCchhccc------chHHHHHHHHhh
Confidence 887766543 2344555888899999877653 33332 467788888888776544321 111111222222
Q ss_pred eecccCCCCCCCCCCCC--cceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCC
Q 048834 940 LLGKLPEPLKLDKLPPN--LRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKEL 1017 (1108)
Q Consensus 940 l~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 1017 (1108)
+....-..+.....++. |+.+.+..+.+.. .+..+..++++..|++.++.+... ......+.+..+........
T Consensus 215 l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 215 LLDNKISKLEGLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL---EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccccceeccCcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc---ccccccchHHHhccCcchhc
Confidence 21110000000011112 6777777776652 224456677777887777665431 22334445555555444422
Q ss_pred Cc---eee-CCCcccccceEeecccCCCC
Q 048834 1018 RE---WTI-GKEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 1018 ~~---lp~-~~~~l~~L~~L~i~~c~~l~ 1042 (1108)
.. ... .....++++.+.+.+++.-.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred chhhhhccccccccccccccccccCcccc
Confidence 11 111 13456667777777666554
No 77
>PTZ00202 tuzin; Provisional
Probab=97.54 E-value=0.0014 Score=71.21 Aligned_cols=96 Identities=11% Similarity=0.077 Sum_probs=59.2
Q ss_pred hhhhhHHHhhhcCC-CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhH
Q 048834 171 DEVKGLAELILSDY-PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVEL 249 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~-~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~ 249 (1108)
.+...+...|...+ ...+++.|.|++|+|||||++.+... .. ..+++..+. +..++++.++.+++-.....
T Consensus 269 aEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~--l~----~~qL~vNpr--g~eElLr~LL~ALGV~p~~~ 340 (550)
T PTZ00202 269 AEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRK--EG----MPAVFVDVR--GTEDTLRSVVKALGVPNVEA 340 (550)
T ss_pred HHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhc--CC----ceEEEECCC--CHHHHHHHHHHHcCCCCccc
Confidence 55566666665422 23458999999999999999999843 22 224444444 77999999999999643222
Q ss_pred HHHhhcchHHHHHHHc-c-CCeEEEEE
Q 048834 250 EEKLLESPQTVVHNYL-I-HKRYLVIL 274 (1108)
Q Consensus 250 ~~~~~~~l~~~l~~~l-~-~kr~LlVL 274 (1108)
...-.+.++..+.+.- . +++.+||+
T Consensus 341 k~dLLrqIqeaLl~~~~e~GrtPVLII 367 (550)
T PTZ00202 341 CGDLLDFISEACRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 2222344444443322 2 56666554
No 78
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.49 E-value=0.00081 Score=73.90 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=73.8
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC----CcccccCCcceeEEE-cCCCCCHHHHHHHHHHHhCCC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS----CDDIKNHFQCRAWFL-VPPRLDKRELAINILNQFAPT 245 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~----~~~~~~~F~~~~~~~-~s~~~~~~~l~~~i~~~~~~~ 245 (1108)
.-++.+..++..+ .-...+-++|+.|+||||+|+.+++ ......|+|...|.. .+....+.++. ++.+.+...
T Consensus 11 ~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~~~~~ 88 (313)
T PRK05564 11 NIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEEVNKK 88 (313)
T ss_pred HHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHHHhcC
Confidence 3345556665433 2234578999999999999987763 112345677666654 23334444422 333333221
Q ss_pred chhHHHHhhcchHHHHHHHccCCeEEEEEc-CCCChhhHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 246 DVELEEKLLESPQTVVHNYLIHKRYLVILT-DVRTPDIWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 246 ~~~~~~~~~~~l~~~l~~~l~~kr~LlVLD-DVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
. ...++|++||=| |..+...+++|...+..-.+++.+|++|.+.+
T Consensus 89 p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~ 134 (313)
T PRK05564 89 P-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLE 134 (313)
T ss_pred c-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 1 124567766655 66677889999999987778999998887654
No 79
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.46 E-value=0.0013 Score=69.37 Aligned_cols=195 Identities=18% Similarity=0.221 Sum_probs=92.2
Q ss_pred eeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHH-----
Q 048834 365 LVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINI----- 439 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~i----- 439 (1108)
|+||+.+++.+.+.+.... ...+.++|..|+|||++++.+.+... ...+ ...+.. ..... .......+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~--~~~~~-~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYID--FLEES-NESSLRSFIEETS 73 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHC--CTTBS-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEe--cccch-hhhHHHHHHHHHH
Confidence 4799999999999886642 35788999999999999998877521 1111 112221 11121 11111111
Q ss_pred -----HHHHhhhhh-------------hhhhhHHHHHHHHHHHhcCCceEEEEeCCCChh--------hHHHHHHHhCCC
Q 048834 440 -----LEQVTRVKI-------------AEELALNELESRLIRLFQSKRYLIVLDDVHLPG--------AWYELQRIFSPN 493 (1108)
Q Consensus 440 -----l~~l~~~~~-------------~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~--------~~~~l~~~~~~~ 493 (1108)
...+..... ........+...+.+ .++++++++||+.... ....+...+...
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111211100 011222233333332 2345999999976533 112233333211
Q ss_pred CCCCCCEEEEEcCchHHHHh-------cCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHH
Q 048834 494 TSSSGSRVILLTREAFVARA-------FSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 494 ~~~~~s~iivttr~~~v~~~-------~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
.......++++......... ..+....+.+.+++.+++.+++...+.....-+.-......+...++|.|..+
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHH
Confidence 11123334444443433333 22334458999999999999998765332100113344577888999999876
Q ss_pred HH
Q 048834 567 CV 568 (1108)
Q Consensus 567 ~~ 568 (1108)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 80
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.44 E-value=0.0069 Score=78.17 Aligned_cols=197 Identities=17% Similarity=0.226 Sum_probs=116.1
Q ss_pred CCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHH
Q 048834 362 EAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILE 441 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~ 441 (1108)
...++-|+...+.+.. ....+++.|.|++|.||||++..+... +....|.+++. .+.+...+...++.
T Consensus 13 ~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~-~d~~~~~f~~~l~~ 80 (903)
T PRK04841 13 LHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDE-SDNQPERFASYLIA 80 (903)
T ss_pred ccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCc-ccCCHHHHHHHHHH
Confidence 4455667655555432 233567899999999999999887643 22578998332 33445556666666
Q ss_pred HHhhhhhhh---------h---hhHHHHHHHHHHHhc--CCceEEEEeCCCCh---hhHHHHHHHhCCCCCCCCCEEEEE
Q 048834 442 QVTRVKIAE---------E---LALNELESRLIRLFQ--SKRYLIVLDDVHLP---GAWYELQRIFSPNTSSSGSRVILL 504 (1108)
Q Consensus 442 ~l~~~~~~~---------~---~~~~~l~~~l~~~l~--~k~~llvlDdv~~~---~~~~~l~~~~~~~~~~~~s~iivt 504 (1108)
.+....... . .+...+...+...+. +.++++|+||+... ...+.+...+. ....+.+++++
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~--~~~~~~~lv~~ 158 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR--HQPENLTLVVL 158 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH--hCCCCeEEEEE
Confidence 664211110 0 112222333333332 67899999998652 22233433332 22366788889
Q ss_pred cCchHHH--HhcCCCcceEecC----CCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHhhcC
Q 048834 505 TREAFVA--RAFSPSIILLQLR----PLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLLSTN 576 (1108)
Q Consensus 505 tr~~~v~--~~~~~~~~~~~~~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l~~~ 576 (1108)
+|...-. ...........+. .++.+++..++....+.... ......+.+.++|.|+++..++..+...
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 9974211 1111112344455 88999999999776544332 2334568889999999999888766543
No 81
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=7.3e-05 Score=75.44 Aligned_cols=80 Identities=26% Similarity=0.272 Sum_probs=60.3
Q ss_pred CCeeEEEEeCCCCCCCCch---hhcCCCCccEEecCCcccc----ccccccCCCCCCcEEeccCCcCc--cCChhhcccc
Q 048834 760 YRLLRVLDLEGVYKPVLPE---TVGKLQLLRYFGLRWTFLD----SIPESVGDLPCLETLDLKHTNIT--SLPKSIWKVK 830 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~---~i~~l~~L~~L~l~~~~i~----~lp~~i~~l~~L~~L~L~~~~l~--~lp~~i~~l~ 830 (1108)
+..++.|+|.+|.+.+..+ .+.+|+.|++|++++|.+. .+| -.+.+|+.|-|.|+.+. ..-..+..++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 3449999999998876543 3567999999999987543 455 35678999999998554 5556677888
Q ss_pred ccCEEEeccccc
Q 048834 831 TLRHLYMNDIYL 842 (1108)
Q Consensus 831 ~L~~L~l~~~~~ 842 (1108)
.+++|+++.|.+
T Consensus 147 ~vtelHmS~N~~ 158 (418)
T KOG2982|consen 147 KVTELHMSDNSL 158 (418)
T ss_pred hhhhhhhccchh
Confidence 888888877643
No 82
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.40 E-value=0.00063 Score=71.78 Aligned_cols=109 Identities=12% Similarity=0.125 Sum_probs=76.0
Q ss_pred hhhhhhHHHhhhcCCCC-CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhC--CCc
Q 048834 170 NDEVKGLAELILSDYPS-PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFA--PTD 246 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~-~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~--~~~ 246 (1108)
+.+...+..++...+.. .++|-|+|-.|.|||.+.+.+++... -..+|+++-..|+.+.++..|+.++. .+.
T Consensus 12 e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~~~~d~d 86 (438)
T KOG2543|consen 12 ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKSQLADKD 86 (438)
T ss_pred HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHhccCCCc
Confidence 47778888888776663 44468899999999999999996532 13479999999999999999999984 222
Q ss_pred hhHH---HHhhcchHHHHHH--Hcc--CCeEEEEEcCCCChhhH
Q 048834 247 VELE---EKLLESPQTVVHN--YLI--HKRYLVILTDVRTPDIW 283 (1108)
Q Consensus 247 ~~~~---~~~~~~l~~~l~~--~l~--~kr~LlVLDDVw~~~~~ 283 (1108)
.... ..+.......+.+ ... +++++||||.++.-.+.
T Consensus 87 g~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~ 130 (438)
T KOG2543|consen 87 GDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM 130 (438)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc
Confidence 1111 1223333333433 222 56999999999875543
No 83
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.36 E-value=0.00048 Score=71.64 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
+.+.-+-.||.+|+||||||+.+-+..+-.. .-||..|..-....=.+.|+++.... ..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~-----------------~~ 218 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE-----------------KS 218 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH-----------------Hh
Confidence 4555688999999999999999996644333 55787776554444455566653311 13
Q ss_pred ccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEe
Q 048834 265 LIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSF 303 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTT 303 (1108)
+.++|-.|.+|.|-. ..|-+.+ +|....|+.++|-.
T Consensus 219 l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGA 256 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGA 256 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEec
Confidence 567888899999964 3443433 34567788888733
No 84
>PRK08118 topology modulation protein; Reviewed
Probab=97.36 E-value=6.8e-05 Score=73.35 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=27.6
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccc-cCCcceeE
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIK-NHFQCRAW 222 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~-~~F~~~~~ 222 (1108)
-|.|+|++|+||||||+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48999999999999999999664444 56777775
No 85
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.35 E-value=0.00067 Score=87.49 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=86.0
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcC-CCCCHHHHHHHHHHHhCCCchh----H
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVP-PRLDKRELAINILNQFAPTDVE----L 249 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s-~~~~~~~l~~~i~~~~~~~~~~----~ 249 (1108)
.+...|.. ....+++-|.|++|.||||++..... .++.++|+++. .+.+...+...++..+...... .
T Consensus 21 rl~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~ 93 (903)
T PRK04841 21 RLLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKS 93 (903)
T ss_pred HHHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchh
Confidence 34444432 34678899999999999999988763 23368899986 4456677777777766321110 0
Q ss_pred H----H---HhhcchHHHHHHHcc--CCeEEEEEcCCCChh--h-HhHhhhhCCCCCCCcEEEEEecchhhhhh--cccc
Q 048834 250 E----E---KLLESPQTVVHNYLI--HKRYLVILTDVRTPD--I-WEIIKFLFPNSLSGSRVILSFREADAAMH--RNLN 315 (1108)
Q Consensus 250 ~----~---~~~~~l~~~l~~~l~--~kr~LlVLDDVw~~~--~-~~~l~~~~~~~~~GSrIiiTTR~~~Va~~--~~~~ 315 (1108)
. . .+.......+-..+. +.+++|||||+-..+ . .+.+...+....++-++|||||....... ....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~ 173 (903)
T PRK04841 94 EALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR 173 (903)
T ss_pred hhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc
Confidence 0 0 001112222222332 678999999996532 2 23333333334556788899998532211 1111
Q ss_pred ccccccchh--HHhhhcccccccc
Q 048834 316 FFGGDLNLS--FKEMKARYPLHEA 337 (1108)
Q Consensus 316 ~~~~~~~~~--~l~~~~~~~Lf~~ 337 (1108)
.....+... .++.+|+-.++..
T Consensus 174 ~~~~~l~~~~l~f~~~e~~~ll~~ 197 (903)
T PRK04841 174 DQLLEIGSQQLAFDHQEAQQFFDQ 197 (903)
T ss_pred CcceecCHHhCCCCHHHHHHHHHh
Confidence 001122233 5666676666643
No 86
>PRK08116 hypothetical protein; Validated
Probab=97.34 E-value=0.0005 Score=72.93 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=57.4
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHK 268 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~k 268 (1108)
-+-++|..|+|||.||.+|++. +..+--.++|+++ ..++..+......... .. ...+.+.+.+-
T Consensus 116 gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~~------~~ll~~i~~~~~~~~~-------~~-~~~~~~~l~~~ 179 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVNF------PQLLNRIKSTYKSSGK-------ED-ENEIIRSLVNA 179 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhcccc-------cc-HHHHHHHhcCC
Confidence 4789999999999999999965 4444333455553 3455555544332110 01 11233445444
Q ss_pred eEEEEEcCCC--ChhhH--hHhhhhCCC-CCCCcEEEEEecc
Q 048834 269 RYLVILTDVR--TPDIW--EIIKFLFPN-SLSGSRVILSFRE 305 (1108)
Q Consensus 269 r~LlVLDDVw--~~~~~--~~l~~~~~~-~~~GSrIiiTTR~ 305 (1108)
. ||||||+- ....| +.+...+.. ...|..+||||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4 79999994 23344 333333322 2456779999863
No 87
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.32 E-value=0.0013 Score=73.14 Aligned_cols=103 Identities=9% Similarity=0.041 Sum_probs=64.7
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhH
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVEL 249 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~ 249 (1108)
++..+.+...|.. -+.|.++|++|+||||+|+.+.+.......|+.+.||++++.++..+++.... ......
T Consensus 181 e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r----P~~vgy 252 (459)
T PRK11331 181 ETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR----PNGVGF 252 (459)
T ss_pred HHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC----CCCCCe
Confidence 3566666666653 23588899999999999999986543445788888999999988776654221 111000
Q ss_pred HHHhhcchHHHHHHHcc--CCeEEEEEcCCCChh
Q 048834 250 EEKLLESPQTVVHNYLI--HKRYLVILTDVRTPD 281 (1108)
Q Consensus 250 ~~~~~~~l~~~l~~~l~--~kr~LlVLDDVw~~~ 281 (1108)
.. ........++..-. +++++||+|++....
T Consensus 253 ~~-~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 253 RR-KDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred Ee-cCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 00 00112223333322 468999999998643
No 88
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.31 E-value=0.00035 Score=78.57 Aligned_cols=132 Identities=9% Similarity=0.075 Sum_probs=70.0
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
.+-|-++|++|+||||+|+++.+. ....| +.++. ..+ .....+. . .......++..-.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~----~~l----~~~~~g~----~---~~~i~~~f~~a~~ 213 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG----SEL----VRKYIGE----G---ARLVREIFELAKE 213 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----HHH----HHHhhhH----H---HHHHHHHHHHHHh
Confidence 345889999999999999999954 43333 33321 111 1111110 0 0111112222223
Q ss_pred CCeEEEEEcCCCCh----------------hhHhHhhhhCCCC--CCCcEEEEEecchhhhhhc--cccccccccchhHH
Q 048834 267 HKRYLVILTDVRTP----------------DIWEIIKFLFPNS--LSGSRVILSFREADAAMHR--NLNFFGGDLNLSFK 326 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~----------------~~~~~l~~~~~~~--~~GSrIiiTTR~~~Va~~~--~~~~~~~~~~~~~l 326 (1108)
....+|+|||++.. ..+..+...+... ..+.+||.||...+..... ....+...+.+...
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 45679999999752 1133333333221 3467888888754322111 11112356777777
Q ss_pred hhhccccccccccc
Q 048834 327 EMKARYPLHEAVVV 340 (1108)
Q Consensus 327 ~~~~~~~Lf~~~a~ 340 (1108)
+.++.+.++..++.
T Consensus 294 ~~~~r~~Il~~~~~ 307 (364)
T TIGR01242 294 DFEGRLEILKIHTR 307 (364)
T ss_pred CHHHHHHHHHHHHh
Confidence 77888888766543
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.30 E-value=0.00029 Score=73.73 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=57.4
Q ss_pred hhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHH
Q 048834 172 EVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEE 251 (1108)
Q Consensus 172 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~ 251 (1108)
-.+.+..++.. .....|-|+|..|+||||||+.+++. ........+|+..+.-.+.. ..
T Consensus 25 ~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~---~~-------------- 83 (226)
T TIGR03420 25 LLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQAD---PE-------------- 83 (226)
T ss_pred HHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhH---HH--------------
Confidence 44455555432 33456889999999999999999954 33333344555543221100 00
Q ss_pred HhhcchHHHHHHHccCCeEEEEEcCCCChh---hH-hHhhhhCCC-CCCCcEEEEEecch
Q 048834 252 KLLESPQTVVHNYLIHKRYLVILTDVRTPD---IW-EIIKFLFPN-SLSGSRVILSFREA 306 (1108)
Q Consensus 252 ~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~---~~-~~l~~~~~~-~~~GSrIiiTTR~~ 306 (1108)
+...+.+. -+||+||+.... .| +.+...+.. ...+.+||+||+..
T Consensus 84 ---------~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 84 ---------VLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred ---------HHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 11112222 378999998533 33 344433321 12345889988853
No 90
>PRK09087 hypothetical protein; Validated
Probab=97.29 E-value=0.00023 Score=73.42 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=61.9
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
-..+.|||..|+|||||++++++... ..|+... .+..+++.. +.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~-----------------------~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANA-----------------------AA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHh-----------------------hh
Confidence 35689999999999999999885421 1133321 111111111 11
Q ss_pred CCeEEEEEcCCCCh--hhHhHhhhhCCC-CCCCcEEEEEecc---------hhhhhhccccccccccchhHHhhhccccc
Q 048834 267 HKRYLVILTDVRTP--DIWEIIKFLFPN-SLSGSRVILSFRE---------ADAAMHRNLNFFGGDLNLSFKEMKARYPL 334 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~--~~~~~l~~~~~~-~~~GSrIiiTTR~---------~~Va~~~~~~~~~~~~~~~~l~~~~~~~L 334 (1108)
+ -+|++|||... .+ +.+...+.. ...|..||+|++. .++..++... ..++++.++.++...+
T Consensus 88 ~--~~l~iDDi~~~~~~~-~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDE-TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQV 161 (226)
T ss_pred c--CeEEEECCCCCCCCH-HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHH
Confidence 1 27888999532 11 222222211 2347789998873 3344444333 6677777777777666
Q ss_pred ccccc
Q 048834 335 HEAVV 339 (1108)
Q Consensus 335 f~~~a 339 (1108)
+.+.+
T Consensus 162 L~~~~ 166 (226)
T PRK09087 162 IFKLF 166 (226)
T ss_pred HHHHH
Confidence 65544
No 91
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.27 E-value=0.0014 Score=79.37 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=36.2
Q ss_pred CCceeeehHHHHHHHHHHhCC------CCce-EEEEEEcCCCChHHHHHHHHhcC
Q 048834 362 EAELVGLKDQLLRLAQLTMSS------SSKY-FLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~------~~~~-~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
...++|-+..++.+.+.+... .+.| ..+-++|+.|+|||.+|+.+...
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 345778888888888887632 2334 36889999999999999988665
No 92
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.24 E-value=0.00037 Score=76.69 Aligned_cols=155 Identities=13% Similarity=0.036 Sum_probs=75.2
Q ss_pred hhhhhHHHhhhc---CCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCch
Q 048834 171 DEVKGLAELILS---DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDV 247 (1108)
Q Consensus 171 ~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~ 247 (1108)
..++.+..++.. .......+-++|++|+||||||+++.+. ....| .++..+....... +...+..+.....
T Consensus 11 ~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~--~~~~~---~~~~~~~~~~~~~-l~~~l~~~~~~~v 84 (305)
T TIGR00635 11 KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANE--MGVNL---KITSGPALEKPGD-LAAILTNLEEGDV 84 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCCE---EEeccchhcCchh-HHHHHHhcccCCE
Confidence 445555555543 1234555789999999999999999854 32222 1121111111122 2222333322110
Q ss_pred ----hHHHHhhcchHHHHHHHccCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhccccccccccch
Q 048834 248 ----ELEEKLLESPQTVVHNYLIHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRNLNFFGGDLNL 323 (1108)
Q Consensus 248 ----~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~~~~~~~~~~ 323 (1108)
+.+.. ....+..+...+.+.+..+|+|+..+..+|... + .+.+-|..|||...+....... +...+.+
T Consensus 85 l~iDEi~~l-~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~---~---~~~~li~~t~~~~~l~~~l~sR-~~~~~~l 156 (305)
T TIGR00635 85 LFIDEIHRL-SPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD---L---PPFTLVGATTRAGMLTSPLRDR-FGIILRL 156 (305)
T ss_pred EEEehHhhh-CHHHHHHhhHHHhhhheeeeeccCccccceeec---C---CCeEEEEecCCccccCHHHHhh-cceEEEe
Confidence 00100 011233455556666666777776665555321 1 2245666788765443321110 1234556
Q ss_pred hHHhhhcccccccccc
Q 048834 324 SFKEMKARYPLHEAVV 339 (1108)
Q Consensus 324 ~~l~~~~~~~Lf~~~a 339 (1108)
.+++.++...++...+
T Consensus 157 ~~l~~~e~~~il~~~~ 172 (305)
T TIGR00635 157 EFYTVEELAEIVSRSA 172 (305)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6666666655555443
No 93
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.24 E-value=9.2e-05 Score=73.74 Aligned_cols=230 Identities=20% Similarity=0.090 Sum_probs=113.3
Q ss_pred eeEEEEeCCCCCCC-----CchhhcCCCCccEEecCCccc----cccccc-------cCCCCCCcEEeccCCcCc-cCCh
Q 048834 762 LLRVLDLEGVYKPV-----LPETVGKLQLLRYFGLRWTFL----DSIPES-------VGDLPCLETLDLKHTNIT-SLPK 824 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~i----~~lp~~-------i~~l~~L~~L~L~~~~l~-~lp~ 824 (1108)
.+..++||||.+.. +...|.+-.+|+..+++.-.. .++|++ +-+|++|+..+|+.|.+. ..|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 36777777776543 344556667777777765211 133332 346677777777777443 3333
Q ss_pred ----hhccccccCEEEeccccccccccCCccc-------------cCcccccccccccccCCC----CChhhhccCcCCc
Q 048834 825 ----SIWKVKTLRHLYMNDIYLQMSVQKPFVK-------------YSLTNLQTLWSLLIGNKS----PPLNWLESLRGLK 883 (1108)
Q Consensus 825 ----~i~~l~~L~~L~l~~~~~~~~~~~~~~l-------------~~l~~L~~L~~~~~~~~~----~~~~~l~~l~~L~ 883 (1108)
.|.+-+.|.+|.+++|...... ...| .+-+.|+...+..+.... .....+....+|+
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~a--G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIA--GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccc--hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 2556677777777776543111 0111 122333333221111111 1123344445677
Q ss_pred eeeeeecccchhh----HHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcce
Q 048834 884 KLGLTCHIASLGQ----IAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRI 959 (1108)
Q Consensus 884 ~L~l~~~~~~~~~----lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~ 959 (1108)
.+.+..+...-+. +...+..+++|+.|+|..|.+....+......+... +.|+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W----------------------~~lrE 246 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW----------------------NLLRE 246 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc----------------------chhhh
Confidence 7777655433121 122344567777777777665443222211122222 24556
Q ss_pred EEEEeccCCCCCccc----c--ccccccceeeeccccccCceeee------CCCCCCcccEEEeccCC
Q 048834 960 LTLSLSYLSEDPMPV----L--GQLKELNILRLFAHSFMGEEMTC------GDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 960 L~l~~~~~~~~~~~~----~--~~l~~L~~L~L~~~~~~~~~~~~------~~~~~~~L~~L~l~~~~ 1015 (1108)
|.+..|-+...-..+ + ..+|+|..|.+.+|...+..+.. ..+++|-|..|.++++.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 666665443322211 1 13566777766666544332211 23567777777776665
No 94
>PRK08727 hypothetical protein; Validated
Probab=97.22 E-value=0.00026 Score=73.78 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=26.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLV 225 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~ 225 (1108)
..+.|+|..|+|||+||+++++. ...+.....|+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~ 77 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPL 77 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeH
Confidence 34999999999999999999853 4444444556653
No 95
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.21 E-value=2e-05 Score=88.79 Aligned_cols=104 Identities=22% Similarity=0.264 Sum_probs=81.8
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChhhccccccCEEEec
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMN 838 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 838 (1108)
++.|+.|||+.|++.+.- .+..|.+|++|||++|.+..+|.- +..+ +|..|++++|.++.+ .+|.+|.+|+.||++
T Consensus 186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDls 262 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDLS 262 (1096)
T ss_pred HHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccchh
Confidence 344999999999887774 788899999999999988888852 3334 399999999988887 578999999999999
Q ss_pred cccccccccCCccccCccccccccccccc
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLIG 867 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 867 (1108)
+|-+....++ ..++.|..|+.|++.++.
T Consensus 263 yNll~~hseL-~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 263 YNLLSEHSEL-EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred Hhhhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence 8876554433 337788888888877653
No 96
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.21 E-value=0.0009 Score=78.74 Aligned_cols=131 Identities=10% Similarity=0.034 Sum_probs=72.7
Q ss_pred hhhhhhHHHhhhc---CCCCCceEeEEccCCCChhhHHHHhcCCccc---ccCCcc--eeEEEcCCCCCHHHHHHHHHHH
Q 048834 170 NDEVKGLAELILS---DYPSPLHIPVVDVAGSAETPELWKIYSCDDI---KNHFQC--RAWFLVPPRLDKRELAINILNQ 241 (1108)
Q Consensus 170 ~~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~---~~~F~~--~~~~~~s~~~~~~~l~~~i~~~ 241 (1108)
|++.++|...|.. ++..-.++=|+|++|.|||+.++.|.+.-+- +..... .++|......+...+...|..+
T Consensus 761 EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qq 840 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQ 840 (1164)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHH
Confidence 5677777666644 3333456789999999999999999853211 112222 3344444556778888888888
Q ss_pred hCCCchhHHHHhhcchHHHHHHHc-c--CCeEEEEEcCCCChh--hHhHhhhhCCCC-CCCcEEEE
Q 048834 242 FAPTDVELEEKLLESPQTVVHNYL-I--HKRYLVILTDVRTPD--IWEIIKFLFPNS-LSGSRVIL 301 (1108)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~l~~~l-~--~kr~LlVLDDVw~~~--~~~~l~~~~~~~-~~GSrIii 301 (1108)
+.+........ .......+...+ . +...+||||||+... +=+.|...+.|. ..+++|+|
T Consensus 841 L~g~~P~~Gls-S~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 841 LFNKKPPNALN-SFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred HcCCCCCcccc-HHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 85443211111 111222333333 2 234589999998532 112233222222 35677665
No 97
>PRK04195 replication factor C large subunit; Provisional
Probab=97.20 E-value=0.0013 Score=76.77 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=62.0
Q ss_pred hhhhhhHHHhhhcC--CCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCch
Q 048834 170 NDEVKGLAELILSD--YPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDV 247 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~ 247 (1108)
+...+.+..|+..- ....+.+-|+|++|+||||+|+++.++ .. |+ .+.+..|...+.. ....++.......
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e--l~--~~-~ielnasd~r~~~-~i~~~i~~~~~~~- 92 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND--YG--WE-VIELNASDQRTAD-VIERVAGEAATSG- 92 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--cC--CC-EEEEcccccccHH-HHHHHHHHhhccC-
Confidence 35556677776542 222677999999999999999999865 21 22 2233344332222 2233332221110
Q ss_pred hHHHHhhcchHHHHHHHcc-CCeEEEEEcCCCChh------hHhHhhhhCCCCCCCcEEEEEec
Q 048834 248 ELEEKLLESPQTVVHNYLI-HKRYLVILTDVRTPD------IWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 248 ~~~~~~~~~l~~~l~~~l~-~kr~LlVLDDVw~~~------~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
.+- .++-+||+||++... .++.+...+. ..+..||+|+.
T Consensus 93 ----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n 138 (482)
T PRK04195 93 ----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTAN 138 (482)
T ss_pred ----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEecc
Confidence 111 367789999998632 2566655544 23455666664
No 98
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0036 Score=67.00 Aligned_cols=124 Identities=20% Similarity=0.298 Sum_probs=76.0
Q ss_pred CceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 048834 384 SKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR 463 (1108)
Q Consensus 384 ~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~ 463 (1108)
+.+.-...||++|+||||+|+.+... ....| .. .|-..+-.+-++.+++.-. +.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~--~sAv~~gvkdlr~i~e~a~-----------------~~ 99 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EA--LSAVTSGVKDLREIIEEAR-----------------KN 99 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EE--eccccccHHHHHHHHHHHH-----------------HH
Confidence 44667889999999999999998765 33333 22 2222222222222222211 22
Q ss_pred HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEE--EcCchHH--HHhcCCCcceEecCCCChhhhHHHHhh
Q 048834 464 LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVIL--LTREAFV--ARAFSPSIILLQLRPLNVDESWELFLK 537 (1108)
Q Consensus 464 ~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iiv--ttr~~~v--~~~~~~~~~~~~~~~L~~~~~~~lf~~ 537 (1108)
...+++.++++|+|+. ..+-+.+.. ....|..++| ||.+... -...-+...++.+.+|+.++...++.+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp-----~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLP-----HVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhh-----hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 3458899999999975 444444433 3336777776 4554432 223335668999999999999998877
Q ss_pred h
Q 048834 538 K 538 (1108)
Q Consensus 538 ~ 538 (1108)
.
T Consensus 175 a 175 (436)
T COG2256 175 A 175 (436)
T ss_pred H
Confidence 4
No 99
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0024 Score=70.66 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=79.2
Q ss_pred hhhhhhHHHhhhc----CCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcc--eeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 170 NDEVKGLAELILS----DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQC--RAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 170 ~~~~~~~~~~l~~----~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~--~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
+++.+++...|.. +.+. -+-|+|..|.|||+.++.|. .++...... .++|..-......++...|+.++.
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~--n~~iyG~~GTGKT~~~~~v~--~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 23 EEEINQLASFLAPALRGERPS--NIIIYGPTGTGKTATVKFVM--EELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCc--cEEEECCCCCCHhHHHHHHH--HHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 3555555544433 2222 28899999999999999999 445554332 577777778889999999999886
Q ss_pred CCchhHHHHhhcchHHHHHHHc--cCCeEEEEEcCCCChhhH--hHhhhhCCCCC-CCcEEEEEec
Q 048834 244 PTDVELEEKLLESPQTVVHNYL--IHKRYLVILTDVRTPDIW--EIIKFLFPNSL-SGSRVILSFR 304 (1108)
Q Consensus 244 ~~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVLDDVw~~~~~--~~l~~~~~~~~-~GSrIiiTTR 304 (1108)
.... .. +...+.-..+.+.+ .++.++||||+++.-..= +.|-.-+.+.. .+++|+|..-
T Consensus 99 ~~p~-~g-~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i 162 (366)
T COG1474 99 KVPL-TG-DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAV 162 (366)
T ss_pred CCCC-CC-CchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEE
Confidence 3321 11 11223334455555 468999999999853211 33333333222 2577665443
No 100
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.15 E-value=0.002 Score=75.60 Aligned_cols=40 Identities=8% Similarity=0.139 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 267 HKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
++.-++|||+|... ..|+.|+..+.......++|+||.+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence 44457779999864 45888888776656678888877754
No 101
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.13 E-value=0.00075 Score=74.71 Aligned_cols=40 Identities=15% Similarity=-0.009 Sum_probs=27.6
Q ss_pred hhhhhHHHhhhc---CCCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 171 DEVKGLAELILS---DYPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 171 ~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
...+.+..++.. .......+-|+|++|+||||||+++.+.
T Consensus 32 ~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 32 KVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 344444444432 2344566889999999999999999854
No 102
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.12 E-value=1.6e-05 Score=89.51 Aligned_cols=124 Identities=20% Similarity=0.112 Sum_probs=98.0
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEecccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 841 (1108)
|...+.++|.+..+-+++.-++.|+.|||++|.+...- .+..|.+|+||||++|.+..+|.- ...+ .|+.|.+++|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccH
Confidence 77778888888888888999999999999999888765 688999999999999999988863 2233 39999999987
Q ss_pred ccccccCCccccCcccccccccccccCCC-CChhhhccCcCCceeeeeeccc
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKS-PPLNWLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~ 892 (1108)
... ..++.+|++|+.|+++.+-... .-..-+..+..|..|.|.+|..
T Consensus 244 l~t----L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 LTT----LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHh----hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 653 3458899999999998774432 2334466677888888887754
No 103
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.11 E-value=0.00094 Score=62.95 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=18.8
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
|-|+|..|+||||+|+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 468999999999999999954
No 104
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.11 E-value=0.00081 Score=68.58 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=27.4
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEE
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFL 224 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~ 224 (1108)
-++|+|..|.|||||...+..+ ...+|+.+..++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 3889999999999999999844 788896555543
No 105
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.08 E-value=0.0093 Score=69.56 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=33.8
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHh-cCCcccccCC-cceeEEEcCC
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKI-YSCDDIKNHF-QCRAWFLVPP 227 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v-~~~~~~~~~F-~~~~~~~~s~ 227 (1108)
.+.++|..+=+.-+++-|.|.+|.||||||.+. |+- . .++ +..+||+..+
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g--~-~~~ge~~lyvs~eE 60 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNG--I-IHFDEPGVFVTFEE 60 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHH--H-HhCCCCEEEEEEec
Confidence 344444444456678999999999999999776 421 2 233 5677888754
No 106
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.07 E-value=6.4e-05 Score=89.36 Aligned_cols=242 Identities=22% Similarity=0.170 Sum_probs=121.5
Q ss_pred CCCCccEEecCCc-cccc--cccccCCCCCCcEEeccCC--cCccCC----hhhccccccCEEEeccccccccccCCccc
Q 048834 782 KLQLLRYFGLRWT-FLDS--IPESVGDLPCLETLDLKHT--NITSLP----KSIWKVKTLRHLYMNDIYLQMSVQKPFVK 852 (1108)
Q Consensus 782 ~l~~L~~L~l~~~-~i~~--lp~~i~~l~~L~~L~L~~~--~l~~lp----~~i~~l~~L~~L~l~~~~~~~~~~~~~~l 852 (1108)
.+++|+.|.+.++ .+.. +-.....+++|+.|++++| .....+ .....+.+|+.|+++.|....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-------- 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-------- 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--------
Confidence 3677777777776 4444 3344567778888888763 211111 122334555566555543211
Q ss_pred cCcccccccccccccCCCCChhhhc-cCcCCceeeeeecc-cchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCC
Q 048834 853 YSLTNLQTLWSLLIGNKSPPLNWLE-SLRGLKKLGLTCHI-ASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLN 930 (1108)
Q Consensus 853 ~~l~~L~~L~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 930 (1108)
......+. .+++|+.|.+..+. .....+-.....+++|++|++++|........... ..
T Consensus 258 -----------------d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~--~~ 318 (482)
T KOG1947|consen 258 -----------------DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL--LK 318 (482)
T ss_pred -----------------chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH--HH
Confidence 11111121 14556666554443 23244444445566677777776665532111111 12
Q ss_pred CccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCC--C-CccccccccccceeeeccccccCceeeeCCCCCCccc
Q 048834 931 NHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSE--D-PMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLR 1007 (1108)
Q Consensus 931 ~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 1007 (1108)
.+++|+.+.+.+... ++.++.+.+..+.... . ..-....+++|+.+.+..+.......
T Consensus 319 ~c~~l~~l~~~~~~~--------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~----------- 379 (482)
T KOG1947|consen 319 NCPNLRELKLLSLNG--------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL----------- 379 (482)
T ss_pred hCcchhhhhhhhcCC--------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch-----------
Confidence 244444433322211 1355555555443321 1 11224567888888887766322111
Q ss_pred EEEeccCCCC-CceeeCCCcccccceEeecccCCCCC--CcccCC-CCCCCEEEEecCchHHHHHH
Q 048834 1008 VLKLWVQKEL-REWTIGKEAMPELRELEIRCCKKMKK--PIELEK-LSSLKELTLTDMKKSFEYEV 1069 (1108)
Q Consensus 1008 ~L~l~~~~~l-~~lp~~~~~l~~L~~L~i~~c~~l~l--p~~l~~-l~~L~~L~l~~c~~~~~~~~ 1069 (1108)
.+.+.+|+.+ ..+......+.+|+.|++..|..... ...... +..+..+++.+|+.......
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhh
Confidence 3445555555 33333333344488899998887761 111111 67788888888886444443
No 107
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.06 E-value=0.016 Score=68.67 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=98.6
Q ss_pred CCCceeeehHHHHHHHHHHhCC--CCce-EEEEEEcCCCChHHHHHHHHhcCccc---cccCceeEEEEeccCCCcCHHH
Q 048834 361 PEAELVGLKDQLLRLAQLTMSS--SSKY-FLISVVGVAGSGKTTLVETIYNSSYI---RQNFEYHAWANVDVSHDFDLRK 434 (1108)
Q Consensus 361 ~~~~~~g~~~~l~~i~~~l~~~--~~~~-~~i~i~G~~g~GKT~la~~~~~~~~~---~~~f~~~~w~~v~~s~~~~~~~ 434 (1108)
.+..+.||+.+++.|...|... +..| .++.|.|.+|.|||+.++.+.....- +.......++.+..........
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 3467889999999999888754 2233 46779999999999999999765211 1122223334433555566777
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHh-c--CCceEEEEeCCCChh--hHHHHHHHhCCCCCCCCCEEEE--EcCc
Q 048834 435 VFINILEQVTRVKIAEELALNELESRLIRLF-Q--SKRYLIVLDDVHLPG--AWYELQRIFSPNTSSSGSRVIL--LTRE 507 (1108)
Q Consensus 435 l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l-~--~k~~llvlDdv~~~~--~~~~l~~~~~~~~~~~~s~iiv--ttr~ 507 (1108)
++..++.++.+.......+.......+...+ . +...+||||+++... .-+.+...|.- ....++++++ ++..
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-PTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-hhccCCeEEEEEecCc
Confidence 8888888885433222222222333333322 2 234589999987522 22234333321 1123455544 2222
Q ss_pred hHHH----HhcCC--CcceEecCCCChhhhHHHHhhhhc
Q 048834 508 AFVA----RAFSP--SIILLQLRPLNVDESWELFLKKVG 540 (1108)
Q Consensus 508 ~~v~----~~~~~--~~~~~~~~~L~~~~~~~lf~~~~~ 540 (1108)
.... ..... ....+...+.+.++..+++...+.
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence 1111 11111 112355678888888888866553
No 108
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.01 E-value=0.00045 Score=72.06 Aligned_cols=38 Identities=8% Similarity=0.009 Sum_probs=27.4
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVP 226 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s 226 (1108)
...+-|+|+.|+|||+||+++++. ....-..+.|+.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 356889999999999999999954 33333344566653
No 109
>PLN03025 replication factor C subunit; Provisional
Probab=96.99 E-value=0.003 Score=69.61 Aligned_cols=112 Identities=10% Similarity=0.080 Sum_probs=58.4
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccc-ccCCcc-eeEEEcCCCCCHHHHHHHHHHHhCCCchhHHH
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDI-KNHFQC-RAWFLVPPRLDKRELAINILNQFAPTDVELEE 251 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~-~~~F~~-~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~ 251 (1108)
+.+..++.. .+...+-++|.+|+||||+|+++.+. . ...|.. ++-+..|...+... .++++..+....
T Consensus 23 ~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~----- 92 (319)
T PLN03025 23 SRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHE--LLGPNYKEAVLELNASDDRGIDV-VRNKIKMFAQKK----- 92 (319)
T ss_pred HHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHH--HhcccCccceeeecccccccHHH-HHHHHHHHHhcc-----
Confidence 344444433 23344679999999999999998743 2 222322 11122233333222 222222211100
Q ss_pred HhhcchHHHHHHHccCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 252 KLLESPQTVVHNYLIHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 252 ~~~~~l~~~l~~~l~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
. ..-.++.-+++|||++.. ..-+.|...+....+.+++|+||..
T Consensus 93 --~--------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 93 --V--------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred --c--------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 0 000245568899999863 3456666555555667888877753
No 110
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.98 E-value=0.0014 Score=62.69 Aligned_cols=23 Identities=22% Similarity=0.097 Sum_probs=20.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..+.|+|.+|+||||+|+.+.+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 46899999999999999999844
No 111
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.95 E-value=0.00031 Score=70.11 Aligned_cols=253 Identities=17% Similarity=0.112 Sum_probs=141.7
Q ss_pred hhhcCCCCccEEecCCcccc-----ccccccCCCCCCcEEeccCC---cCc-cCChh-------hccccccCEEEecccc
Q 048834 778 ETVGKLQLLRYFGLRWTFLD-----SIPESVGDLPCLETLDLKHT---NIT-SLPKS-------IWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 778 ~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~---~l~-~lp~~-------i~~l~~L~~L~l~~~~ 841 (1108)
..+..+..+..++||+|.+. .+...|.+-.+|+..+++.- ... .+|.+ +-+++.|+..++++|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34455788999999999776 45566777888999988763 111 44433 4578899999999987
Q ss_pred ccccccCC--ccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 842 LQMSVQKP--FVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 842 ~~~~~~~~--~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
+....+.+ ..|++-++|.+|.+.+|+..+.....+++ -|.+| ..-....+-+.|+++....|....
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l----------a~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL----------AYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH----------HHHhhhccCCCceEEEeccchhcc
Confidence 76544321 12445566666666555443322111110 00000 000011223445555554444444
Q ss_pred CCCccccCCCCCccCccceEee--cccCCCCC-----CCCCCCCcceEEEEeccCCCCC----ccccccccccceeeecc
Q 048834 920 EPSDLVIGPLNNHRALNELYLL--GKLPEPLK-----LDKLPPNLRILTLSLSYLSEDP----MPVLGQLKELNILRLFA 988 (1108)
Q Consensus 920 ~~~~~~~~~~~~l~~L~~l~l~--~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~ 988 (1108)
.+.......+....+|+.+.+. |.-|..+. ....+.+|+.|+|..|.++..- ...+...+.|+.|.+.+
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnD 251 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLND 251 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccc
Confidence 4333333333333444444442 22233211 1122368999999988776432 22344577899999999
Q ss_pred ccccCceee-----eCCCCCCcccEEEeccCCCCCceee-------CCCcccccceEeecccCCCC
Q 048834 989 HSFMGEEMT-----CGDGGFPKLRVLKLWVQKELREWTI-------GKEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 989 ~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~lp~-------~~~~l~~L~~L~i~~c~~l~ 1042 (1108)
|-+...... +..-.+|+|..|...++..-..+.. .-.++|-|..|.+.+|....
T Consensus 252 Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 252 CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 976543211 1223478888888877653322221 12478999999999998765
No 112
>PF13173 AAA_14: AAA domain
Probab=96.95 E-value=0.0058 Score=56.98 Aligned_cols=119 Identities=19% Similarity=0.325 Sum_probs=70.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQ 466 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 466 (1108)
+++.+.|..++||||+++.++.+.. ......+++ ...... . .. ...+ +...+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~--~~~~~~----~-----~~--------~~~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYIN--FDDPRD----R-----RL--------ADPD-LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeec--cCCHHH----H-----HH--------hhhh-hHHHHHHhhc
Confidence 4788999999999999998876521 112223333 111100 0 00 0001 3334444444
Q ss_pred CCceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHh-----cCCCcceEecCCCChhh
Q 048834 467 SKRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREAFVARA-----FSPSIILLQLRPLNVDE 530 (1108)
Q Consensus 467 ~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~-----~~~~~~~~~~~~L~~~~ 530 (1108)
.+..++++|++.....|......+.. ..+..++++|+........ ..+....+++.+++..|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d--~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVD--NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHH--hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 57889999999987778766665551 2256788888887665532 22334566777777665
No 113
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.95 E-value=0.012 Score=67.42 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=92.5
Q ss_pred ceeeehHHHHH---HHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHH
Q 048834 364 ELVGLKDQLLR---LAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINIL 440 (1108)
Q Consensus 364 ~~~g~~~~l~~---i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il 440 (1108)
+++|.+..+.. +.+.+... .+..+.++|.+|+||||+|+.+++. ... .|..+..... ... ..+.++
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~--~~~-----~~~~l~a~~~-~~~-~ir~ii 81 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA--TDA-----PFEALSAVTS-GVK-DLREVI 81 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH--hCC-----CEEEEecccc-cHH-HHHHHH
Confidence 45666655444 55555433 3446778999999999999998775 222 2333112111 111 111111
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEE--cCch--HHHHhc
Q 048834 441 EQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILL--TREA--FVARAF 514 (1108)
Q Consensus 441 ~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivt--tr~~--~v~~~~ 514 (1108)
.... .....++..++++|+++. ..+.+.+...+. .+..+++. |.+. .+....
T Consensus 82 ~~~~-----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le-----~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 82 EEAR-----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE-----DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHH-----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh-----cCcEEEEEeCCCChhhhccHHH
Confidence 1110 011245788999999986 344555555443 34544443 3332 222233
Q ss_pred CCCcceEecCCCChhhhHHHHhhhhcCcC-Cc-hHHHHHHHHHHHHcCCchhHH
Q 048834 515 SPSIILLQLRPLNVDESWELFLKKVGREK-RA-SELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 515 ~~~~~~~~~~~L~~~~~~~lf~~~~~~~~-~~-~~~~~~~~~i~~~~~glPlal 566 (1108)
.....++.+.+++.++...++...+.... .. ....+....+++.++|-+..+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~a 193 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRA 193 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHH
Confidence 34457889999999999999877543211 00 112334456677777776544
No 114
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.91 E-value=0.0037 Score=65.12 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=60.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHH-----HHHHhhhhhhhhhhHHHHHHHH
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINI-----LEQVTRVKIAEELALNELESRL 461 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~i-----l~~l~~~~~~~~~~~~~l~~~l 461 (1108)
..+.++|.+|+||||+++.+++..... +|+...|+.+......+..++++.+ +..++.................
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 478899999999999999999985333 7899999883333347888888888 3333332111111122222222
Q ss_pred HHH-hcCCceEEEEeCCCC
Q 048834 462 IRL-FQSKRYLIVLDDVHL 479 (1108)
Q Consensus 462 ~~~-l~~k~~llvlDdv~~ 479 (1108)
..+ -.+++.++++|++..
T Consensus 96 ~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 96 KRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHCCCCEEEEEECHHH
Confidence 222 357899999999864
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.89 E-value=0.0048 Score=68.24 Aligned_cols=110 Identities=11% Similarity=0.088 Sum_probs=59.2
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHH
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELE 250 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~ 250 (1108)
...+.+..++..+ .-..++-++|.+|+||||+|+++++. .... ..++..+. ..... .++.+..+...
T Consensus 28 ~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~--~~~~---~~~i~~~~-~~~~~-i~~~l~~~~~~----- 94 (316)
T PHA02544 28 ADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNE--VGAE---VLFVNGSD-CRIDF-VRNRLTRFAST----- 94 (316)
T ss_pred HHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHH--hCcc---ceEeccCc-ccHHH-HHHHHHHHHHh-----
Confidence 4455666666543 23456777999999999999999853 2211 12333333 22211 11111111000
Q ss_pred HHhhcchHHHHHHHccCCeEEEEEcCCCCh---hhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 251 EKLLESPQTVVHNYLIHKRYLVILTDVRTP---DIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 251 ~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~---~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
..+.+.+-+||+||+... +..+.+...+.....+.++|+||..
T Consensus 95 ------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 95 ------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred ------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 001133446888999754 2234444444445567899998864
No 116
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.88 E-value=0.0031 Score=65.81 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=54.1
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcc-eeEEEcCCCC-CHHHHHHHHHHHhCCCc--------hhHHHH--hhcch
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQC-RAWFLVPPRL-DKRELAINILNQFAPTD--------VELEEK--LLESP 257 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~-~~~~~~s~~~-~~~~l~~~i~~~~~~~~--------~~~~~~--~~~~l 257 (1108)
++|.|-.|+||||||+.+++. ++.+|+. ++++-+.+.. .+.++..++.+.=..+. .+.... ..-..
T Consensus 72 ~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~ 149 (274)
T cd01133 72 IGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALT 149 (274)
T ss_pred EEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 999999999999999999954 6667754 4456676665 44566666654311110 000000 00011
Q ss_pred HHHHHHHc---cCCeEEEEEcCCCCh
Q 048834 258 QTVVHNYL---IHKRYLVILTDVRTP 280 (1108)
Q Consensus 258 ~~~l~~~l---~~kr~LlVLDDVw~~ 280 (1108)
...+.+++ ++|.||||+||+-..
T Consensus 150 a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 150 GLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 22344555 389999999998754
No 117
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.88 E-value=0.0023 Score=68.16 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.5
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...-+-++|.+|+||||+|+.+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHH
Confidence 445578999999999999999974
No 118
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.86 E-value=0.0029 Score=69.61 Aligned_cols=176 Identities=19% Similarity=0.153 Sum_probs=92.1
Q ss_pred ceeeehHHHHHHHHHHhCC---CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSS---SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINIL 440 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~---~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il 440 (1108)
+++|++..++.+...+... .+.+..+.++|++|+|||++|+.+.+.. ...+ .... ......... +...+
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~--~~~~~~~~~-l~~~l 76 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITS--GPALEKPGD-LAAIL 76 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEec--cchhcCchh-HHHHH
Confidence 4589999888887777532 3445668899999999999999987762 2111 1111 111111111 11111
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCC-----------------CCCCCCCEE
Q 048834 441 EQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSP-----------------NTSSSGSRV 501 (1108)
Q Consensus 441 ~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~-----------------~~~~~~s~i 501 (1108)
..+ +...++++||+.. ....+.+...+.. ....+.+-+
T Consensus 77 ~~~-----------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 77 TNL-----------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred Hhc-----------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 111 2234556666543 1111112111100 000123344
Q ss_pred EEEcCchHHHHhcCCC-cceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHH
Q 048834 502 ILLTREAFVARAFSPS-IILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGG 571 (1108)
Q Consensus 502 ivttr~~~v~~~~~~~-~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~ 571 (1108)
..|++...+.....+. ...+.+.+++.++..+++...+..... ....+....+++.++|.|..+..+..
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 4555554333322111 246789999999999998876543221 11233446688899999966554443
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.0034 Score=72.34 Aligned_cols=70 Identities=10% Similarity=0.049 Sum_probs=42.1
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEE-EecchhhhhhccccccccccchhHHhhhcccccccc
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVIL-SFREADAAMHRNLNFFGGDLNLSFKEMKARYPLHEA 337 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIii-TTR~~~Va~~~~~~~~~~~~~~~~l~~~~~~~Lf~~ 337 (1108)
.+++-++|+|+++. ...|+.|...+....+.+++|+ ||+...+....... ...+++..++.++.......
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR--c~~~ef~~ls~~el~~~L~~ 198 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR--CQRYDLRRLSFEEIFKLLEY 198 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc--ceEEEccCCCHHHHHHHHHH
Confidence 45667889999996 4568888887766556667664 55544554332221 13455556665555544443
No 120
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.85 E-value=0.0025 Score=76.78 Aligned_cols=120 Identities=11% Similarity=0.048 Sum_probs=63.2
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC-CCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR-LDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~-~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
.+.-+-++|++|+||||||+.+.+. ...+| +.++.. .++..+ ++++ ....+.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i~di-r~~i-------------------~~a~~~ 103 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGVKDL-RAEV-------------------DRAKER 103 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhhHHH-HHHH-------------------HHHHHH
Confidence 4455789999999999999999954 44444 222111 011111 1111 111111
Q ss_pred c--cCCeEEEEEcCCC--ChhhHhHhhhhCCCCCCCcEEEEEecchhhhh----hccccccccccchhHHhhhccccccc
Q 048834 265 L--IHKRYLVILTDVR--TPDIWEIIKFLFPNSLSGSRVILSFREADAAM----HRNLNFFGGDLNLSFKEMKARYPLHE 336 (1108)
Q Consensus 265 l--~~kr~LlVLDDVw--~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~----~~~~~~~~~~~~~~~l~~~~~~~Lf~ 336 (1108)
+ .+++.+|+||||+ +..+++.|...+ ..|+.|+|++....... ..-.. ...+.+.+++.++...+..
T Consensus 104 l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR--~~v~~l~pLs~edi~~IL~ 178 (725)
T PRK13341 104 LERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSR--SRLFRLKSLSDEDLHQLLK 178 (725)
T ss_pred hhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhcc--ccceecCCCCHHHHHHHHH
Confidence 1 2467789999997 456677776544 34666666443332211 11000 1345566666665555554
Q ss_pred c
Q 048834 337 A 337 (1108)
Q Consensus 337 ~ 337 (1108)
.
T Consensus 179 ~ 179 (725)
T PRK13341 179 R 179 (725)
T ss_pred H
Confidence 3
No 121
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0071 Score=70.19 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=27.6
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
.+++-++|+||+.. ...++.|+..+......+++|.+|-
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 35666889999984 4568888888776556677775553
No 122
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0011 Score=76.56 Aligned_cols=129 Identities=10% Similarity=-0.096 Sum_probs=62.2
Q ss_pred hhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHH
Q 048834 173 VKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEK 252 (1108)
Q Consensus 173 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~ 252 (1108)
++.+..++..+. -...+-++|+.|+||||+|+.+.+.-.....+...||.|.+...- .......+..+.... .....
T Consensus 23 ~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i-~~~~h~dv~el~~~~-~~~vd 99 (504)
T PRK14963 23 KEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV-RRGAHPDVLEIDAAS-NNSVE 99 (504)
T ss_pred HHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH-hcCCCCceEEecccc-cCCHH
Confidence 344445544432 223468999999999999998874322122233344444321100 000000000001000 00111
Q ss_pred hhcchHHHHHH-HccCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEec
Q 048834 253 LLESPQTVVHN-YLIHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 253 ~~~~l~~~l~~-~l~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
++.++...+.. -..+++-++|+|+++.. ..++.|...+....+...+|++|.
T Consensus 100 ~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 100 DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 12222222221 12345668889999853 558888887766555666665554
No 123
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0067 Score=70.56 Aligned_cols=41 Identities=2% Similarity=0.105 Sum_probs=29.2
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
.+++-++|+|+|.. ....+.|+..+.....+.++|+||.+.
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 35666788999985 356788887776555667888877653
No 124
>PRK06893 DNA replication initiation factor; Validated
Probab=96.81 E-value=0.02 Score=59.62 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=68.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQ 466 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 466 (1108)
..+.++|.+|+|||++++++++.. ........++. .+.. . .. .. .+.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~--~~~~---~----~~--------------~~----~~~~~~~ 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIP--LSKS---Q----YF--------------SP----AVLENLE 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEee--HHHh---h----hh--------------hH----HHHhhcc
Confidence 468899999999999999998762 22222345555 2100 0 00 00 0111122
Q ss_pred CCceEEEEeCCCC---hhhHH-HHHHHhCCCCCCCCCEEE-EEcCc---------hHHHHhcCCCcceEecCCCChhhhH
Q 048834 467 SKRYLIVLDDVHL---PGAWY-ELQRIFSPNTSSSGSRVI-LLTRE---------AFVARAFSPSIILLQLRPLNVDESW 532 (1108)
Q Consensus 467 ~k~~llvlDdv~~---~~~~~-~l~~~~~~~~~~~~s~ii-vttr~---------~~v~~~~~~~~~~~~~~~L~~~~~~ 532 (1108)
+.-++++||++. ...|+ .+...+.... ..+..++ +|+.. ..+...+. ...++++.+++.++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~-~~~~~illits~~~p~~l~~~~~~L~sRl~-~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIK-EQGKTLLLISADCSPHALSIKLPDLASRLT-WGEIYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHH-HcCCcEEEEeCCCChHHccccchhHHHHHh-cCCeeeCCCCCHHHHH
Confidence 335899999986 34454 2333332111 1355554 44443 24444333 2457889999999999
Q ss_pred HHHhhhhc
Q 048834 533 ELFLKKVG 540 (1108)
Q Consensus 533 ~lf~~~~~ 540 (1108)
+++.+.+.
T Consensus 168 ~iL~~~a~ 175 (229)
T PRK06893 168 IVLQRNAY 175 (229)
T ss_pred HHHHHHHH
Confidence 99987664
No 125
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.77 E-value=0.032 Score=65.80 Aligned_cols=131 Identities=16% Similarity=0.178 Sum_probs=80.8
Q ss_pred HHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCC-CCCHHHHHHHHHHHhCCCch---h-HH
Q 048834 176 LAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPP-RLDKRELAINILNQFAPTDV---E-LE 250 (1108)
Q Consensus 176 ~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~-~~~~~~l~~~i~~~~~~~~~---~-~~ 250 (1108)
+.+.|. +..+.+.+-|..++|.|||||+-.... ....=..+.|.+... +.++.++...++..+..-.. + ..
T Consensus 27 L~~~L~-~~~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~ 102 (894)
T COG2909 27 LLDRLR-RANDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQ 102 (894)
T ss_pred HHHHHh-cCCCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHH
Confidence 344443 345788999999999999999877652 223334578998764 56888888888887762221 1 11
Q ss_pred -------HHhhcchHHHHHHHcc--CCeEEEEEcCCC---ChhhHhHhhhhCCCCCCCcEEEEEecchhhhh
Q 048834 251 -------EKLLESPQTVVHNYLI--HKRYLVILTDVR---TPDIWEIIKFLFPNSLSGSRVILSFREADAAM 310 (1108)
Q Consensus 251 -------~~~~~~l~~~l~~~l~--~kr~LlVLDDVw---~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~ 310 (1108)
..+...+.+.+..-|. .+...+||||-- +..--+.+.--+....++=..|||||+..-..
T Consensus 103 ~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~ 174 (894)
T COG2909 103 TLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLG 174 (894)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCc
Confidence 0112223344444443 467999999953 22222334434444556789999999876443
No 126
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.74 E-value=0.00018 Score=64.06 Aligned_cols=97 Identities=24% Similarity=0.282 Sum_probs=51.2
Q ss_pred eEEEEeCCCCCCCCch---hhcCCCCccEEecCCccccccccccC-CCCCCcEEeccCCcCccCChhhccccccCEEEec
Q 048834 763 LRVLDLEGVYKPVLPE---TVGKLQLLRYFGLRWTFLDSIPESVG-DLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMN 838 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~---~i~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 838 (1108)
+-.|+|++|.+..+++ .+....+|...++++|.++.+|..+. +.+.+..|+|.+|.+..+|.++..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 4555666665444433 33444555555666666666655544 2335566666666666666666666666666665
Q ss_pred cccccccccCCccccCcccccccc
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLW 862 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~ 862 (1108)
.|.+.. .|..+..|.+|..|+
T Consensus 109 ~N~l~~---~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 109 FNPLNA---EPRVIAPLIKLDMLD 129 (177)
T ss_pred cCcccc---chHHHHHHHhHHHhc
Confidence 554432 233344444444443
No 127
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.74 E-value=0.0022 Score=72.42 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=21.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..+-|-++|.+|+|||++|+++.+.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHH
Confidence 3455889999999999999999853
No 128
>PRK09183 transposase/IS protein; Provisional
Probab=96.72 E-value=0.0034 Score=66.32 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..+.|+|..|+||||||.++.+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3478999999999999999974
No 129
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.71 E-value=0.018 Score=66.82 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHccCCeEEEEEcCCCChhh-----H-hHhhhhCCCCCCCcEEEEEecchhhhhhccc
Q 048834 259 TVVHNYLIHKRYLVILTDVRTPDI-----W-EIIKFLFPNSLSGSRVILSFREADAAMHRNL 314 (1108)
Q Consensus 259 ~~l~~~l~~kr~LlVLDDVw~~~~-----~-~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~ 314 (1108)
..|.+.|-.+.=+|+||.=-|.-+ | +.... .-+| -+||+|.|...+..+.+
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~----~~~g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK----RYPG-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH----hCCC-cEEEEeCCHHHHHHHhh
Confidence 457778888888999998766433 3 33333 2345 78999999887765543
No 130
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.70 E-value=0.00033 Score=62.54 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=68.9
Q ss_pred CeeEEEEeCCCCCCCCchhhcC-CCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGK-LQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~-l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
.+|...+|++|.+.++|+.+.. ++.+.+|++++|.+..+|..+..++.|+.|+++.|.+...|..|..|.+|-.|+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 3488899999999999887754 458999999999999999999999999999999999888998888888888888766
Q ss_pred cc
Q 048834 840 IY 841 (1108)
Q Consensus 840 ~~ 841 (1108)
+.
T Consensus 133 na 134 (177)
T KOG4579|consen 133 NA 134 (177)
T ss_pred Cc
Confidence 53
No 131
>PRK08181 transposase; Validated
Probab=96.70 E-value=0.0026 Score=66.98 Aligned_cols=96 Identities=10% Similarity=0.029 Sum_probs=51.8
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHK 268 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~k 268 (1108)
-+-|+|..|+|||.||.++.+. ...+.-.++|+.+ .++..++...... ......++ .+. +
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~~------~~L~~~l~~a~~~----------~~~~~~l~-~l~-~ 167 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTRT------TDLVQKLQVARRE----------LQLESAIA-KLD-K 167 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeeeH------HHHHHHHHHHHhC----------CcHHHHHH-HHh-c
Confidence 3899999999999999999843 3333334455553 3455554332111 11111222 232 3
Q ss_pred eEEEEEcCCCCh---hhH-hHhhhhCCCC-CCCcEEEEEecc
Q 048834 269 RYLVILTDVRTP---DIW-EIIKFLFPNS-LSGSRVILSFRE 305 (1108)
Q Consensus 269 r~LlVLDDVw~~---~~~-~~l~~~~~~~-~~GSrIiiTTR~ 305 (1108)
-=||||||+... .+| +.+...+... ..+ .+||||..
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~ 208 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQ 208 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCC
Confidence 348999999632 222 2333333211 223 58888764
No 132
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.69 E-value=0.0068 Score=67.93 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=26.8
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+.+..++..+ ....+-++|..|+||||+|+++.+
T Consensus 22 ~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 22 EVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHH
Confidence 4455555655443 334577999999999999999874
No 133
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.69 E-value=0.0077 Score=66.71 Aligned_cols=177 Identities=16% Similarity=0.092 Sum_probs=95.6
Q ss_pred CceeeehHHHHHHHHHHhC---CCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMS---SSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINI 439 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~---~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~i 439 (1108)
.+++|++...+.+...+.. .+..+..+.++|++|+|||++|+.+.+.. ...+ .... . ...+....+..+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~--~-~~~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITS--G-PALEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEe--c-ccccChHHHHHH
Confidence 4568999998888777653 23446678899999999999999987762 2111 1111 1 111111111111
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCCh--hhHHHHHHHhCCC-----------------CCCCCCE
Q 048834 440 LEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLP--GAWYELQRIFSPN-----------------TSSSGSR 500 (1108)
Q Consensus 440 l~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~-----------------~~~~~s~ 500 (1108)
+.. + ....++++||+... ...+.+...+... ...+.+-
T Consensus 97 l~~----------------------l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 97 LTN----------------------L-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred HHh----------------------c-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 111 1 23446677776541 1112221111100 0012334
Q ss_pred EEEEcCchHHHHhcCCC-cceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHH
Q 048834 501 VILLTREAFVARAFSPS-IILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGG 571 (1108)
Q Consensus 501 iivttr~~~v~~~~~~~-~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~ 571 (1108)
|..|++...+.....+. ...+.+..++.++..+++...+.... ...-.+....+++.|+|.|..+..+..
T Consensus 154 i~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 154 IGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred EeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHH
Confidence 45566544333222111 24678899999999999987654332 122234566788999999965544444
No 134
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.68 E-value=0.00069 Score=81.13 Aligned_cols=129 Identities=20% Similarity=0.159 Sum_probs=79.4
Q ss_pred CCccEEecCCc-ccc-ccccccC-CCCCCcEEeccCCcCc--cCChhhccccccCEEEeccccccccccCCccccCcccc
Q 048834 784 QLLRYFGLRWT-FLD-SIPESVG-DLPCLETLDLKHTNIT--SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNL 858 (1108)
Q Consensus 784 ~~L~~L~l~~~-~i~-~lp~~i~-~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 858 (1108)
.+|++||++|. .+. .=|..++ .|+.|++|.+++-.+. .+-.-..++++|..||++++.... -.++++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----l~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN----LSGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC----cHHHhccccH
Confidence 57888888874 222 2234444 5788999888885433 222334577888888988876542 2568888888
Q ss_pred cccccccccCCC-CChhhhccCcCCceeeeeecccchh-----hHHHHHhhcCCCcEEEEEecC
Q 048834 859 QTLWSLLIGNKS-PPLNWLESLRGLKKLGLTCHIASLG-----QIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 859 ~~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~-----~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+.|.+.+..... .....+-.|++|+.|++|....... ...+.-..+|+|+.|+.++..
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 888776665544 3445666778888888875433211 111122235566666665443
No 135
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.67 E-value=0.0036 Score=71.74 Aligned_cols=138 Identities=8% Similarity=0.011 Sum_probs=70.2
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccC-----CcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNH-----FQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVV 261 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~-----F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l 261 (1108)
.+-|-++|++|.|||++|+++++. +... +....|+.++.. +++....+. .......+....
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~e--L~~~i~~~~~~~~~fl~v~~~--------eLl~kyvGe----te~~ir~iF~~A 281 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANS--LAQRIGAETGDKSYFLNIKGP--------ELLNKYVGE----TERQIRLIFQRA 281 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHh--hccccccccCCceeEEeccch--------hhcccccch----HHHHHHHHHHHH
Confidence 445889999999999999999965 3332 223445554431 111111111 011111122222
Q ss_pred HHH-ccCCeEEEEEcCCCCh---------hh-----HhHhhhhCCCCC--CCcEEEEEecchhhhhhcc--ccccccccc
Q 048834 262 HNY-LIHKRYLVILTDVRTP---------DI-----WEIIKFLFPNSL--SGSRVILSFREADAAMHRN--LNFFGGDLN 322 (1108)
Q Consensus 262 ~~~-l~~kr~LlVLDDVw~~---------~~-----~~~l~~~~~~~~--~GSrIiiTTR~~~Va~~~~--~~~~~~~~~ 322 (1108)
++. -.+++++|++|+++.. .+ ...+...+.... .+..||.||...+.....= ...+...++
T Consensus 282 r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~ 361 (512)
T TIGR03689 282 REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR 361 (512)
T ss_pred HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEE
Confidence 222 2357899999999842 11 233444333222 3445556665544332110 112335567
Q ss_pred hhHHhhhccccccccc
Q 048834 323 LSFKEMKARYPLHEAV 338 (1108)
Q Consensus 323 ~~~l~~~~~~~Lf~~~ 338 (1108)
+...+.+++..+|..+
T Consensus 362 ~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 362 IERPDAEAAADIFSKY 377 (512)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 7677777766666544
No 136
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.67 E-value=0.0055 Score=66.57 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=55.1
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccC-Ccce-eEEEcCCC-CCHHHHHHHHHHHhCCCch---hHHHHhh-cchHHHHH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNH-FQCR-AWFLVPPR-LDKRELAINILNQFAPTDV---ELEEKLL-ESPQTVVH 262 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~-F~~~-~~~~~s~~-~~~~~l~~~i~~~~~~~~~---~~~~~~~-~~l~~~l~ 262 (1108)
+.|+|..|+|||||++.+.+. +... =+.+ +|+.+.+. ..+.++++.+...+..... ....... .......+
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 699999999999999998743 4332 2443 56677655 5778888888776654321 1111011 11222222
Q ss_pred HH-ccCCeEEEEEcCCCC
Q 048834 263 NY-LIHKRYLVILTDVRT 279 (1108)
Q Consensus 263 ~~-l~~kr~LlVLDDVw~ 279 (1108)
.. -.++.++||+|++..
T Consensus 214 ~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHcCCCEEEEEeCcHH
Confidence 22 158999999999864
No 137
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.61 E-value=0.0043 Score=58.29 Aligned_cols=113 Identities=24% Similarity=0.297 Sum_probs=70.3
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCcccc---ccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 048834 386 YFLISVVGVAGSGKTTLVETIYNSSYIR---QNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI 462 (1108)
Q Consensus 386 ~~~i~i~G~~g~GKT~la~~~~~~~~~~---~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~ 462 (1108)
...+.++|.+|+|||++++.+....... ..-....|+. .....+...+...++.+++..... ..+...+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~~~ 80 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN--CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSLLI 80 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE--HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE--eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHHHH
Confidence 3578899999999999999987752110 0023445776 666668888999999998865444 345666667777
Q ss_pred HHhcCCce-EEEEeCCCCh---hhHHHHHHHhCCCCCCCCCEEEEEc
Q 048834 463 RLFQSKRY-LIVLDDVHLP---GAWYELQRIFSPNTSSSGSRVILLT 505 (1108)
Q Consensus 463 ~~l~~k~~-llvlDdv~~~---~~~~~l~~~~~~~~~~~~s~iivtt 505 (1108)
+.+...+. ++|+|+++.. ..++.+..... ..+..+++..
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~----~~~~~vvl~G 123 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN----ESNIKVVLVG 123 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC----SCBEEEEEEE
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh----CCCCeEEEEE
Confidence 77766555 9999998653 33344444332 3445555443
No 138
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.01 Score=71.39 Aligned_cols=64 Identities=6% Similarity=0.020 Sum_probs=38.4
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc-hhhhhhccccccccccchhHHhhhcc
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE-ADAAMHRNLNFFGGDLNLSFKEMKAR 331 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~-~~Va~~~~~~~~~~~~~~~~l~~~~~ 331 (1108)
.+++-++|+|++.. ....+.|+..+.......++|++|.+ ..+....-.. -..|.+..++.++.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR--Cq~f~fkpLs~eEI 183 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR--CLQFNLKSLTQDEI 183 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh--heEEeCCCCCHHHH
Confidence 46777899999985 56688888877665566777765544 3343221111 03455555555443
No 139
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.61 E-value=0.003 Score=64.91 Aligned_cols=131 Identities=14% Similarity=0.101 Sum_probs=70.5
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCC-cc-eeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHF-QC-RAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHN 263 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F-~~-~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 263 (1108)
....+-|||..|+|||.|.++++|. +.+.. +. ++|++ ..++...+...+.... ...+++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~~-----------~~~~~~ 93 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRDGE-----------IEEFKD 93 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHTTS-----------HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHccc-----------chhhhh
Confidence 4455789999999999999999964 44332 22 33443 3455555555544321 123556
Q ss_pred HccCCeEEEEEcCCCCh---hhHhH-hhhhCCC-CCCCcEEEEEecchh---------hhhhccccccccccchhHHhhh
Q 048834 264 YLIHKRYLVILTDVRTP---DIWEI-IKFLFPN-SLSGSRVILSFREAD---------AAMHRNLNFFGGDLNLSFKEMK 329 (1108)
Q Consensus 264 ~l~~kr~LlVLDDVw~~---~~~~~-l~~~~~~-~~~GSrIiiTTR~~~---------Va~~~~~~~~~~~~~~~~l~~~ 329 (1108)
.+++-. +|++|||... ..|+. +...+.. ...|-+||+|++... +..+... +-.+++++.+++
T Consensus 94 ~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~---Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 94 RLRSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW---GLVVELQPPDDE 169 (219)
T ss_dssp HHCTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC---SEEEEE----HH
T ss_pred hhhcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh---cchhhcCCCCHH
Confidence 666544 5678999752 33433 2222221 245779999996432 2222222 135555666655
Q ss_pred cccccccccc
Q 048834 330 ARYPLHEAVV 339 (1108)
Q Consensus 330 ~~~~Lf~~~a 339 (1108)
+...+....+
T Consensus 170 ~r~~il~~~a 179 (219)
T PF00308_consen 170 DRRRILQKKA 179 (219)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=96.59 E-value=0.0061 Score=65.40 Aligned_cols=102 Identities=12% Similarity=0.133 Sum_probs=53.0
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHK 268 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~k 268 (1108)
.+-++|.+|+||||+|+.+.+...-...-...-|+.++. .. +.....+.. . ......+++. .+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~---~----~~~~~~l~~a-~g- 123 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT---A----PKTKEVLKKA-MG- 123 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc---h----HHHHHHHHHc-cC-
Confidence 377899999999999999974211111111122555552 12 222222111 0 0111223332 22
Q ss_pred eEEEEEcCCCC-----------hhhHhHhhhhCCCCCCCcEEEEEecchhh
Q 048834 269 RYLVILTDVRT-----------PDIWEIIKFLFPNSLSGSRVILSFREADA 308 (1108)
Q Consensus 269 r~LlVLDDVw~-----------~~~~~~l~~~~~~~~~GSrIiiTTR~~~V 308 (1108)
-+|++|++.. .+..+.|...+.....+-+||.++....+
T Consensus 124 -gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~ 173 (287)
T CHL00181 124 -GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRM 173 (287)
T ss_pred -CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHH
Confidence 3888999964 23345555555555555677777765443
No 141
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.013 Score=65.70 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCChh--hHhHhhhhCCCCCCCcEEEEEecc
Q 048834 267 HKRYLVILTDVRTPD--IWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~~--~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
+++-++|+|++.... .++.+...+.......++|++|.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 455688999998643 588888877666667778877654
No 142
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.06 Score=65.05 Aligned_cols=180 Identities=14% Similarity=0.158 Sum_probs=100.7
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-----------------eeEEEEec
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-----------------YHAWANVD 425 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-----------------~~~w~~v~ 425 (1108)
.+++|-+..++.+.+.+.. +..+-++.++|..|+||||+|+.+.....-..... ....+.++
T Consensus 16 ddIIGQe~Iv~~LknaI~~-~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ-QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh-CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 3557888888877777754 34567788999999999999999876521110000 00001000
Q ss_pred cCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEE
Q 048834 426 VSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVI 502 (1108)
Q Consensus 426 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ii 502 (1108)
.+....++. ++++ ...+. .-..++.-++|+|++.. ....+.+...+- ... ...++|
T Consensus 95 Aas~~kVDd-IReL------------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP-~~vrFI 153 (944)
T PRK14949 95 AASRTKVDD-TREL------------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPP-EHVKFL 153 (944)
T ss_pred cccccCHHH-HHHH------------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccC-CCeEEE
Confidence 110011111 1111 11111 11246778999999875 556666666554 111 344444
Q ss_pred -EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhH
Q 048834 503 -LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLA 565 (1108)
Q Consensus 503 -vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 565 (1108)
.|+....+..........+++.+++.++....+.+...... -..-......|+..+.|-+..
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ 216 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRD 216 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 44555555545455568899999999999888776543221 111123344567778886643
No 143
>PRK06526 transposase; Provisional
Probab=96.54 E-value=0.0038 Score=65.44 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=19.1
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-+-|+|.+|+|||+||.++.+
T Consensus 100 nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHH
Confidence 489999999999999999974
No 144
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.013 Score=67.32 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=19.0
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..+-++|++|+||||+|+.+.+
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3477899999999999999864
No 145
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.018 Score=66.86 Aligned_cols=44 Identities=7% Similarity=0.100 Sum_probs=29.2
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEE-Eecchhhh
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVIL-SFREADAA 309 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIii-TTR~~~Va 309 (1108)
.+++-++|+|+|.. ...++.|+..+..-....++|+ ||....+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 45556788999985 4568888887766555667665 44444444
No 146
>PRK12377 putative replication protein; Provisional
Probab=96.52 E-value=0.0057 Score=63.59 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=43.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
..+.|+|..|+|||+||.++.+. +....-.++|+++. ++...+-....... .... +.+.+ .
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~~~---------~~~~-~l~~l-~ 162 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDNGQ---------SGEK-FLQEL-C 162 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhccc---------hHHH-HHHHh-c
Confidence 45899999999999999999965 44444445666654 34444443332110 0111 22223 3
Q ss_pred CeEEEEEcCCC
Q 048834 268 KRYLVILTDVR 278 (1108)
Q Consensus 268 kr~LlVLDDVw 278 (1108)
+-=||||||+-
T Consensus 163 ~~dLLiIDDlg 173 (248)
T PRK12377 163 KVDLLVLDEIG 173 (248)
T ss_pred CCCEEEEcCCC
Confidence 45689999994
No 147
>PRK10536 hypothetical protein; Provisional
Probab=96.50 E-value=0.026 Score=58.01 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=27.6
Q ss_pred HHccCCeE---EEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 263 NYLIHKRY---LVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 263 ~~l~~kr~---LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
.+++|..+ +||+|...+.+. +.+...+...+.|||||+|=-
T Consensus 168 ~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 168 AYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCC
Confidence 46777766 999999987543 333333344578999999843
No 148
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.49 E-value=0.043 Score=54.88 Aligned_cols=172 Identities=17% Similarity=0.151 Sum_probs=89.0
Q ss_pred CCceeeehHHHHHHHHHHh---CCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHH
Q 048834 362 EAELVGLKDQLLRLAQLTM---SSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFIN 438 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~---~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~ 438 (1108)
-++++|-+..+..+.-.+. ..+..+.-+..+|++|+||||+|..+.+. +...|. +.+ ....-...+
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~s--g~~i~k~~d---- 91 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITS--GPAIEKAGD---- 91 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEE--CCC--SCHH----
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---ecc--chhhhhHHH----
Confidence 4567888877766544332 23445678899999999999999998876 333332 222 111001111
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCC-------CC-----------C
Q 048834 439 ILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTS-------SS-----------G 498 (1108)
Q Consensus 439 il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~-------~~-----------~ 498 (1108)
+...+.. + +++.++++|+++. ..+-+.+..... +.. +. -
T Consensus 92 ------------------l~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamE-d~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 92 ------------------LAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAME-DGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ------------------HHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHH-CSEEEEEBSSSSS-BEEEEE----
T ss_pred ------------------HHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhc-cCeEEEEeccccccceeeccCCCc
Confidence 1111111 1 2455788899986 333343443332 110 11 1
Q ss_pred CEEEEEcCchHHHHhcCCCcce-EecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHH
Q 048834 499 SRVILLTREAFVARAFSPSIIL-LQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 499 s~iivttr~~~v~~~~~~~~~~-~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
+.|=-|||...+.....+...+ .++...+.++..+...+.+..-. -+-..+.+.+|+..+.|-|.-.
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHH
Confidence 2234678877766666655544 47888899988888876543222 2334556778888899988533
No 149
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.49 E-value=0.014 Score=58.63 Aligned_cols=45 Identities=29% Similarity=0.455 Sum_probs=31.7
Q ss_pred eeeehHHHHHHHHHHh-CCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 365 LVGLKDQLLRLAQLTM-SSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~-~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
++||+.+++.+...+. ...+.+..+.+.|.+|+|||++.+.++..
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999994 33666899999999999999999988776
No 150
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.017 Score=66.69 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=32.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCC---cceeEEEcCCCCCHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHF---QCRAWFLVPPRLDKRELA 235 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F---~~~~~~~~s~~~~~~~l~ 235 (1108)
..++-+.|..|+||||+++++. ....-|| +|.-+++-+...+..+++
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~va--s~lg~h~~evdc~el~~~s~~~~etkl~ 480 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVA--SELGLHLLEVDCYELVAESASHTETKLQ 480 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHH--HHhCCceEeccHHHHhhcccchhHHHHH
Confidence 4567789999999999999998 4455543 455555555555544433
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.48 E-value=0.0066 Score=65.20 Aligned_cols=99 Identities=10% Similarity=0.101 Sum_probs=51.4
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCe
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKR 269 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr 269 (1108)
|-++|.+|.||||+|+.+..-..-........|+.++. .. ++..+.+.. . ......+.+. ..
T Consensus 61 vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~---~----~~~~~~~~~a---~~ 122 (284)
T TIGR02880 61 MSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT---A----PKTKEILKRA---MG 122 (284)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc---h----HHHHHHHHHc---cC
Confidence 78999999999999977763211111111223555552 12 222222211 0 0111223332 22
Q ss_pred EEEEEcCCCC-----------hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 270 YLVILTDVRT-----------PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 270 ~LlVLDDVw~-----------~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
-+|+||++.. .+.++.|...+.....+-+||.+|...
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~ 170 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKD 170 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcH
Confidence 4788899962 223556666665555566777776543
No 152
>PRK05642 DNA replication initiation factor; Validated
Probab=96.43 E-value=0.003 Score=65.82 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=51.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
..+-|||..|+|||.||+++.+. ....-..++|++..+ +... . ..+.+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~----------------~----~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR----------------G----PELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh----------------h----HHHHHhhhh
Confidence 55889999999999999999853 332223345665431 1110 0 012222332
Q ss_pred CeEEEEEcCCCC---hhhHhH-hhhhCCC-CCCCcEEEEEecch
Q 048834 268 KRYLVILTDVRT---PDIWEI-IKFLFPN-SLSGSRVILSFREA 306 (1108)
Q Consensus 268 kr~LlVLDDVw~---~~~~~~-l~~~~~~-~~~GSrIiiTTR~~ 306 (1108)
-- +||+|||.. ..+|+. +...+.. ...|.+||+|++..
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 22 678899973 345644 3333322 23577888888744
No 153
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.42 E-value=0.68 Score=49.78 Aligned_cols=165 Identities=16% Similarity=0.272 Sum_probs=102.5
Q ss_pred CceeeehHHHHHHHHHHhCC-CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS-SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILE 441 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~-~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~ 441 (1108)
+.+.+|+..+..+...+... +-.|.++.++|.+|.|||.+.+.+++... ....|++ .-..+....++..|+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n--~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLN--CVECFTYAILLEKILN 78 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----Ccceeee--hHHhccHHHHHHHHHH
Confidence 34568999999999999887 44788889999999999999999887631 2347988 8888988989999998
Q ss_pred HHhhhhhhh------hhhHHHHHHHHHH--Hhc--CCceEEEEeCCCChhhH--------HHHHHHhCCCCCCCCCEEEE
Q 048834 442 QVTRVKIAE------ELALNELESRLIR--LFQ--SKRYLIVLDDVHLPGAW--------YELQRIFSPNTSSSGSRVIL 503 (1108)
Q Consensus 442 ~l~~~~~~~------~~~~~~l~~~l~~--~l~--~k~~llvlDdv~~~~~~--------~~l~~~~~~~~~~~~s~iiv 503 (1108)
+.....++. .....+....+.+ ... ++.+++++|+++...+. -.+....+ .....++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~-----~~~i~ii 153 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN-----EPTIVII 153 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC-----CCceEEE
Confidence 884211111 1223333333433 122 46899999998652221 12222233 2223333
Q ss_pred EcCchHHHHhc---C-CCcceEecCCCChhhhHHHHhhhh
Q 048834 504 LTREAFVARAF---S-PSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 504 ttr~~~v~~~~---~-~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
++-........ + ....++....-+.++...++.+..
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 33333222222 1 123455566677888877776643
No 154
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.41 E-value=0.0019 Score=59.66 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=19.4
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
||+|+|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999973
No 155
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.39 E-value=0.031 Score=66.13 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=37.2
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHH
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINI 238 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i 238 (1108)
.+.++|..+=+.-+++-|.|.+|+||||||..+.. .-..++=+.++|++.... ..++.+.+
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~-~~~~~~ge~~lyis~ee~--~~~i~~~~ 79 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLV-NGIKRFDEPGVFVTFEES--PEDIIRNV 79 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH-HHHHhcCCCEEEEEccCC--HHHHHHHH
Confidence 33344444445567899999999999999976541 112222345678876553 34444443
No 156
>PRK06921 hypothetical protein; Provisional
Probab=96.38 E-value=0.0075 Score=63.88 Aligned_cols=37 Identities=16% Similarity=0.050 Sum_probs=27.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccC-CcceeEEEc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNH-FQCRAWFLV 225 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~-F~~~~~~~~ 225 (1108)
..-+-++|..|+|||+||.+|.+. +..+ --.++|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 345899999999999999999964 4443 233456664
No 157
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.019 Score=64.85 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=25.4
Q ss_pred hhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 172 EVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 172 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-+..+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 26 iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 26 AIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred HHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344555554432 123477999999999999999874
No 158
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.33 E-value=0.0063 Score=58.62 Aligned_cols=124 Identities=25% Similarity=0.222 Sum_probs=78.0
Q ss_pred eEEEEeCCCCCCCCchhhc-CCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhcc-ccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVG-KLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWK-VKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~-l~~L~~L~l~~~ 840 (1108)
=+.++|++..+...-. ++ -+.+...+||+++.+..++. +..+..|.+|.|.+|.|+.+-+.+.. +++|+.|.+.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4566666665433322 22 23466778888887776643 55788888888888888877777664 566888888887
Q ss_pred cccccccCCccccCcccccccccccccCCC---CChhhhccCcCCceeeeee
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKS---PPLNWLESLRGLKKLGLTC 889 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~---~~~~~l~~l~~L~~L~l~~ 889 (1108)
.+..... ...+..+++|+.|.+..+.... --...+..+++|+.|+...
T Consensus 99 si~~l~d-l~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGD-LDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhh-cchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6644332 2235566666666655543322 1234566677777777664
No 159
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.024 Score=66.79 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=26.4
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-+..+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 23 ~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk 60 (709)
T PRK08691 23 HVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAK 60 (709)
T ss_pred HHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHH
Confidence 44455666665432 223478999999999999988753
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.32 E-value=0.024 Score=57.12 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
+.+-++|+||+.. .+.++.|...+....+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 4556788999875 445788888777666677788777643
No 161
>PRK07261 topology modulation protein; Provisional
Probab=96.31 E-value=0.0051 Score=60.58 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=19.0
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.|.|+|++|+||||||+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 389999999999999999874
No 162
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.051 Score=61.56 Aligned_cols=192 Identities=13% Similarity=0.034 Sum_probs=98.4
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQV 443 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l 443 (1108)
+++|-+..+..+...+.... .+.++.++|..|+||||+|+.+.....-....... . ......-..+...+..++
T Consensus 19 dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~---p--Cg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 19 DVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE---P--CNECTSCLEITKGISSDV 92 (484)
T ss_pred HHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc---c--cCCCcHHHHHHccCCccc
Confidence 45787777777777766543 45678999999999999999986652111000000 0 000000000000000000
Q ss_pred h---hhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCE-EEEEcCchHHHHhcCC
Q 048834 444 T---RVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSR-VILLTREAFVARAFSP 516 (1108)
Q Consensus 444 ~---~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~-iivttr~~~v~~~~~~ 516 (1108)
. ........+..++...+.. -..++.-++|+|+++. ...++.+...+. ... .... |+.|+....+......
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp-~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPP-AHIVFILATTEFHKIPETILS 170 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCC-CceEEEeecCChhhccHHHHh
Confidence 0 0000000111222222221 1245667999999875 556777766554 111 2333 3455555555555555
Q ss_pred CcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 517 SIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 517 ~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
....+.+..++.++..+.+......... ..-.+....|++.+.|-+.
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHH
Confidence 6678899999998887777665432221 1112234556677777653
No 163
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.27 E-value=0.00064 Score=80.79 Aligned_cols=234 Identities=21% Similarity=0.181 Sum_probs=128.6
Q ss_pred CCeeEEEEeCCCC-CCC--CchhhcCCCCccEEecCCc--ccccc----ccccCCCCCCcEEeccCCc-CccC-Chhhc-
Q 048834 760 YRLLRVLDLEGVY-KPV--LPETVGKLQLLRYFGLRWT--FLDSI----PESVGDLPCLETLDLKHTN-ITSL-PKSIW- 827 (1108)
Q Consensus 760 l~~Lr~L~L~~~~-~~~--lp~~i~~l~~L~~L~l~~~--~i~~l----p~~i~~l~~L~~L~L~~~~-l~~l-p~~i~- 827 (1108)
+++|+.|.+.+|. +.. +-.....+++|+.|++++| .+... +.....+.+|+.|++++|. ++.. -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 7779999999985 554 4466778999999999873 22211 2233457899999999985 5421 12222
Q ss_pred cccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccc-hhhHHHHHhhcCC
Q 048834 828 KVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIAS-LGQIAKWIQDLIS 906 (1108)
Q Consensus 828 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~lp~~l~~l~~ 906 (1108)
.+++|++|.+.+|...... .+......+++|++|+++++... ...+......+++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~------------------------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~ 322 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDE------------------------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN 322 (482)
T ss_pred hCCCcceEccCCCCccchh------------------------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence 3677888876666431111 12223344555666666655432 1234444555667
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCC---CC--CCCCCCCCcceEEEEeccCCCCC-ccccccccc
Q 048834 907 LESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPE---PL--KLDKLPPNLRILTLSLSYLSEDP-MPVLGQLKE 980 (1108)
Q Consensus 907 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~---~~--~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~ 980 (1108)
|+.|.+..+.. +..++.+.+.++... .. -....+++++.+.+..|...... ...+.++|+
T Consensus 323 l~~l~~~~~~~--------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~ 388 (482)
T KOG1947|consen 323 LRELKLLSLNG--------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPN 388 (482)
T ss_pred hhhhhhhhcCC--------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcc
Confidence 77666544332 222333333222110 00 11222367888888877633222 233456666
Q ss_pred cceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeC-CC-cccccceEeecccCCCC
Q 048834 981 LNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIG-KE-AMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 981 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-~~-~l~~L~~L~i~~c~~l~ 1042 (1108)
|. ..+..+ ...+..|+.|.++.|.....--.. .. .+.++..+.+.+|+...
T Consensus 389 l~-~~l~~~----------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 389 LT-ESLELR----------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cc-hHHHHH----------hccCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 63 222211 122233888888888755432211 11 16778888888888776
No 164
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.16 Score=59.33 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=97.9
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccc------c-------------CceeEEEEe
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQ------N-------------FEYHAWANV 424 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~------~-------------f~~~~w~~v 424 (1108)
+++|-+..++.+...+.. +..+.++.++|..|+||||+|+.+.....-.. | |....++.
T Consensus 17 diiGq~~~v~~L~~~i~~-~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid- 94 (546)
T PRK14957 17 EVAGQQHALNSLVHALET-QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID- 94 (546)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee-
Confidence 457888888777777754 34566788999999999999998865311000 0 00111111
Q ss_pred ccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCE-
Q 048834 425 DVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSR- 500 (1108)
Q Consensus 425 ~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~- 500 (1108)
.......++ ...+...+. .-..+++-++++|+++. ...++.+...+. ... ..+.
T Consensus 95 -aas~~gvd~-------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp-~~v~f 152 (546)
T PRK14957 95 -AASRTGVEE-------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPP-EYVKF 152 (546)
T ss_pred -cccccCHHH-------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCC-CCceE
Confidence 111111111 111111111 11345677999999875 445666666554 222 3444
Q ss_pred EEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch-hHHHHH
Q 048834 501 VILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP-LAICVL 569 (1108)
Q Consensus 501 iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lal~~~ 569 (1108)
|++|+....+..........+++..++.++....+...+..... ..-......++..++|-+ .++..+
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44566555555445556688999999999877776654322111 111222334566666633 344333
No 165
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.27 E-value=0.0081 Score=67.42 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.6
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..+-|-++|.+|.||||||+++.+.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999999864
No 166
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.028 Score=65.42 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=27.8
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
.++.-++++|+|.. ....++|+..+..-.+.+++|++|.+
T Consensus 117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd 158 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTD 158 (509)
T ss_pred cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 35555788999985 45678888877665567777766543
No 167
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.26 E-value=0.0098 Score=60.25 Aligned_cols=110 Identities=14% Similarity=0.129 Sum_probs=64.7
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEE-cCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFL-VPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~-~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
+|.|+|..|.||||+++.+... +......+++.. ....+.... ...++.+.. .. .+.......++..|+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~-----vg-~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIEDPIEFVHES-KRSLINQRE-----VG-LDTLSFENALKAALRQ 73 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcCCccccccC-ccceeeecc-----cC-CCccCHHHHHHHHhcC
Confidence 5899999999999999987743 444444444432 111111000 001111100 00 0123455667888877
Q ss_pred CeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhh
Q 048834 268 KRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAM 310 (1108)
Q Consensus 268 kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~ 310 (1108)
..=.+++|.+.+.+.++...... ..|..++.|+-..+++.
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 77799999999887765544432 35677888888777664
No 168
>PRK06620 hypothetical protein; Validated
Probab=96.24 E-value=0.005 Score=62.97 Aligned_cols=23 Identities=9% Similarity=-0.100 Sum_probs=20.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+.+-|||..|+|||+||+++.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 56899999999999999998854
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.22 E-value=0.064 Score=62.63 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=33.4
Q ss_pred eeehHHHHHHHHHHhCC------CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 366 VGLKDQLLRLAQLTMSS------SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 366 ~g~~~~l~~i~~~l~~~------~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
.|.+..++.+.+.+.+. ...+..|.++|.+++|||+|...+...
T Consensus 185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~ 234 (472)
T PRK03003 185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE 234 (472)
T ss_pred CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 36677777777766442 134678999999999999999998765
No 170
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.038 Score=64.82 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=27.5
Q ss_pred cCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 266 IHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
.+++-++|+|++... ...+.|...+..-...+.+|.+|.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 356668899999854 4477788777665556777766643
No 171
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.21 E-value=0.012 Score=67.36 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=53.6
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCc--ceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQ--CRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~--~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
...+-|+|..|+|||+||+++++. +..... ..+|++ ..++..++...+.... . ..+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~~-------~----~~~~~~ 196 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNNK-------M----EEFKEK 196 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcCC-------H----HHHHHH
Confidence 345889999999999999999964 444332 233443 2334445555443221 1 123333
Q ss_pred ccCCeEEEEEcCCCCh---hhH-hHhhhhCCC-CCCCcEEEEEec
Q 048834 265 LIHKRYLVILTDVRTP---DIW-EIIKFLFPN-SLSGSRVILSFR 304 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~~---~~~-~~l~~~~~~-~~~GSrIiiTTR 304 (1108)
+++ .-+||||||... +.+ +.+...+.. ...|..||+||.
T Consensus 197 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 197 YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 433 237889999742 122 223332221 124566777775
No 172
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.023 Score=64.81 Aligned_cols=26 Identities=31% Similarity=0.332 Sum_probs=23.7
Q ss_pred CceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 384 SKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 384 ~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
..|+-|-.+|++|||||++|+++.+.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh
Confidence 45899999999999999999999886
No 173
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.19 E-value=0.0032 Score=59.85 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=48.5
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCccee-EEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCC
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRA-WFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHK 268 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~-~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~k 268 (1108)
|-++|..|+|||+||+.+. ... +..+ .+.+++..+..++....--+ .... ... ...+...++ +
T Consensus 2 vlL~G~~G~GKt~l~~~la--~~~----~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~-~~~---~~~l~~a~~-----~ 65 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELA--ALL----GRPVIRINCSSDTTEEDLIGSYDPS-NGQF-EFK---DGPLVRAMR-----K 65 (139)
T ss_dssp EEEEESSSSSHHHHHHHHH--HHH----TCEEEEEE-TTTSTHHHHHCEEET--TTTT-CEE---E-CCCTTHH-----E
T ss_pred EEEECCCCCCHHHHHHHHH--HHh----hcceEEEEeccccccccceeeeeec-cccc-ccc---ccccccccc-----c
Confidence 5689999999999999998 323 3333 45677778877766433222 1110 000 011110111 7
Q ss_pred eEEEEEcCCCC--hhhHhHhhhhC
Q 048834 269 RYLVILTDVRT--PDIWEIIKFLF 290 (1108)
Q Consensus 269 r~LlVLDDVw~--~~~~~~l~~~~ 290 (1108)
..++|||+++. .+-++.|...+
T Consensus 66 ~~il~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 66 GGILVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEEEEESSCGG--HHHHHTTHHHH
T ss_pred eeEEEECCcccCCHHHHHHHHHHH
Confidence 89999999994 44455554444
No 174
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.18 E-value=0.035 Score=61.58 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=59.3
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEc--CCCCCHHHHHHHHHHHhCCCchh
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLV--PPRLDKRELAINILNQFAPTDVE 248 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~--s~~~~~~~l~~~i~~~~~~~~~~ 248 (1108)
+..+.+..++..+ ....+-|+|..|+||||+|+.+.+.. ....+.. .++.+ +...+... ..+.+.++....
T Consensus 24 ~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~~~~~-~~i~~~~~~~~~~~~-~~~~i~~~~~~~-- 96 (319)
T PRK00440 24 EIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALAREL-YGEDWRE-NFLELNASDERGIDV-IRNKIKEFARTA-- 96 (319)
T ss_pred HHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH-cCCcccc-ceEEeccccccchHH-HHHHHHHHHhcC--
Confidence 4455666666543 34457899999999999999997431 1112221 22322 22222221 111111111000
Q ss_pred HHHHhhcchHHHHHHHccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 249 LEEKLLESPQTVVHNYLIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 249 ~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
..-...+-+|++|++.. .+..+.|...+....+.+++|+|+.
T Consensus 97 --------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 97 --------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred --------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeC
Confidence 00012355788999874 3345666666655556678887764
No 175
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.16 E-value=0.022 Score=67.30 Aligned_cols=40 Identities=5% Similarity=0.109 Sum_probs=28.0
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
.+++-++|+|++.. ....+.|+..+..-....++|.+|.+
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 46667888999985 55688888877655556666655544
No 176
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.034 Score=65.63 Aligned_cols=38 Identities=5% Similarity=0.092 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
++.-++|+|+|.. ...++.|+..+..-....++|++|.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 4555788999985 4568888887765555667776553
No 177
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.031 Score=62.67 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
+++-++++||+.. ....+.|...+....++..+|++|.+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 4444667799985 344677777665555677777777653
No 178
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.13 E-value=0.11 Score=63.83 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=32.4
Q ss_pred eeehHHHHHHHHHHhCCC--------CceEEEEEEcCCCChHHHHHHHHhcCc
Q 048834 366 VGLKDQLLRLAQLTMSSS--------SKYFLISVVGVAGSGKTTLVETIYNSS 410 (1108)
Q Consensus 366 ~g~~~~l~~i~~~l~~~~--------~~~~~i~i~G~~g~GKT~la~~~~~~~ 410 (1108)
.|.+..++.+.+.+.... .....+.++|.+++|||+|...+....
T Consensus 422 ~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~ 474 (712)
T PRK09518 422 RGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE 474 (712)
T ss_pred CCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 366666777766664321 124689999999999999999887653
No 179
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.17 Score=55.57 Aligned_cols=176 Identities=15% Similarity=0.220 Sum_probs=102.2
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCc----cccccCceeEEEEeccCCCcCHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSS----YIRQNFEYHAWANVDVSHDFDLRKVFINI 439 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~----~~~~~f~~~~w~~v~~s~~~~~~~l~~~i 439 (1108)
+++|-+...+.+.+.+.. +..+.++.++|..|+|||++|+.++... ....++|...|... .+.....++ .+++
T Consensus 5 ~i~g~~~~~~~l~~~~~~-~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-~~~~i~v~~-ir~~ 81 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIK-NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-NKKSIGVDD-IRNI 81 (313)
T ss_pred hccCcHHHHHHHHHHHHc-CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-cCCCCCHHH-HHHH
Confidence 346777777777777754 4456788899999999999998886531 12334454444331 112222222 1122
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCC--CChhhHHHHHHHhCCCCCCCCCEEEEEcCch-HHHHhcCC
Q 048834 440 LEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDV--HLPGAWYELQRIFSPNTSSSGSRVILLTREA-FVARAFSP 516 (1108)
Q Consensus 440 l~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv--~~~~~~~~l~~~~~~~~~~~~s~iivttr~~-~v~~~~~~ 516 (1108)
...+.. .-+.+++-++|+|++ .+...++.+...+. ....++.+++++.+. .+.....+
T Consensus 82 ~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LE--epp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 82 IEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIE--EPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHHh
Confidence 221111 112244556666665 45677888887776 223577777776544 33333445
Q ss_pred CcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHH
Q 048834 517 SIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 517 ~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
....+.+..++.++....+...+.. . . ......++..++|.|..+
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~-~-~---~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND-I-K---EEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC-C-C---HHHHHHHHHHcCCCHHHH
Confidence 5678899999999887777554321 1 1 122445677888877544
No 180
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.10 E-value=0.017 Score=56.78 Aligned_cols=40 Identities=15% Similarity=0.092 Sum_probs=29.1
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLD 230 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~ 230 (1108)
++.|+|.+|+||||+|+.+... ...+-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 4789999999999999999743 334445566777665543
No 181
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.043 Score=62.85 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEe
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSF 303 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTT 303 (1108)
+++-++|+|+|.. ....++|...+..-.+.+++|++|
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 4555788899974 445788888777666677777665
No 182
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.10 E-value=0.14 Score=60.86 Aligned_cols=180 Identities=14% Similarity=0.171 Sum_probs=98.5
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------CceeEEEEe
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQN-------------------FEYHAWANV 424 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~-------------------f~~~~w~~v 424 (1108)
+++|.+..++.+.+.+... ..+..+.++|..|+||||+++.+.....-... |....+++
T Consensus 17 EVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEID- 94 (830)
T PRK07003 17 SLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMD- 94 (830)
T ss_pred HHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEec-
Confidence 4578888888777777543 34567779999999999999877554211100 00011111
Q ss_pred ccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEE
Q 048834 425 DVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRV 501 (1108)
Q Consensus 425 ~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~i 501 (1108)
.+.....++ ...+..... .-..++.-++|+|+++. ...++.+...+. ......++
T Consensus 95 -Aas~rgVDd-------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE--EPP~~v~F 152 (830)
T PRK07003 95 -AASNRGVDE-------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE--EPPPHVKF 152 (830)
T ss_pred -ccccccHHH-------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH--hcCCCeEE
Confidence 111111111 111111111 11234556889999886 445676666553 11135565
Q ss_pred EEEcC-chHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCc-hhHHHH
Q 048834 502 ILLTR-EAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGL-PLAICV 568 (1108)
Q Consensus 502 ivttr-~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plal~~ 568 (1108)
|++|. ...+.....+....+++..++.++..+.+.+....+.. ....+....|.+.+.|- ..++..
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55544 44555555566788999999999988888766533221 11123334566666663 344444
No 183
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.09 E-value=0.033 Score=55.42 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.6
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEE
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWF 223 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~ 223 (1108)
.-.+|.|+|+.|+||||+|+.++ .+....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~--~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALY--ERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH--HHHHHcCCcEEEE
Confidence 34579999999999999999999 4466666666665
No 184
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.07 E-value=0.032 Score=64.74 Aligned_cols=187 Identities=16% Similarity=0.108 Sum_probs=98.0
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCC-------CcCHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSH-------DFDLRKVF 436 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~-------~~~~~~l~ 436 (1108)
+++|-+...+.+.+.+.. +..+-++.++|..|+||||+|+.+.....-...+...+|.+ .+. ..+...
T Consensus 15 dvvGq~~v~~~L~~~i~~-~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C--~sc~~i~~~~h~dv~e-- 89 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQ-GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC--ESCLAVRRGAHPDVLE-- 89 (504)
T ss_pred HhcChHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC--hhhHHHhcCCCCceEE--
Confidence 457777776667666655 34566789999999999999998866521111111112221 100 000000
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEc-CchHHHH
Q 048834 437 INILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLT-REAFVAR 512 (1108)
Q Consensus 437 ~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivtt-r~~~v~~ 512 (1108)
+............++...+.. -+.+++-++|+|+++. ...++.+...+. .......+++++ ....+..
T Consensus 90 ------l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE--ep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 90 ------IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE--EPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred ------ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH--hCCCCEEEEEEcCChhhCCh
Confidence 000000000111112111111 1235667899999875 445666666654 112344444444 3444444
Q ss_pred hcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 513 AFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 513 ~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
........+++.+++.++....+...+...... .-.+....++..++|.+.
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMR 212 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 444556789999999999988887655322211 122334456677777654
No 185
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.12 Score=60.43 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=99.2
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccc-----c------c--Cce---------eEE
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIR-----Q------N--FEY---------HAW 421 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~-----~------~--f~~---------~~w 421 (1108)
+++|-+...+.+.+.+.. +..+-++.++|..|+||||+|+.+.....-. . | ... ..+
T Consensus 17 dVIGQe~vv~~L~~al~~-gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQ-QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHcCcHHHHHHHHHHHHh-CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 457877777777776654 4456788899999999999998885542110 0 0 000 011
Q ss_pred EEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH----HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCC
Q 048834 422 ANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR----LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTS 495 (1108)
Q Consensus 422 ~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~----~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~ 495 (1108)
+.++..... ..+++...+.. -..++.-++|+|+++. ...++.+...+. ...
T Consensus 96 iEIdAas~~----------------------gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP 152 (700)
T PRK12323 96 IEMDAASNR----------------------GVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPP 152 (700)
T ss_pred eEecccccC----------------------CHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCC
Confidence 111111111 11222211111 1245667899999876 456666666554 122
Q ss_pred CCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhH
Q 048834 496 SSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLA 565 (1108)
Q Consensus 496 ~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 565 (1108)
..-.-|++|+....+.....+....+.+..++.++..+.+.+......... ..+....|.+.++|-+..
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRD 221 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 122345566666666655556667889999999988887765543222111 122334567778887753
No 186
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.04 E-value=0.021 Score=59.59 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=39.5
Q ss_pred HHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCC------cceeEEEcCCCCCHHHHHH
Q 048834 177 AELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF------QCRAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 177 ~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F------~~~~~~~~s~~~~~~~l~~ 236 (1108)
..+|..+=+.-.++.|+|.+|+||||||..+. ......- ..++|+.....++..++.+
T Consensus 9 D~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia--~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 9 DELLGGGIPTGRITEIFGEFGSGKTQLCLQLA--VEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred HHHhCCCCcCCcEEEEeCCCCCChhHHHHHHH--HHhhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 33443344556789999999999999998876 2232333 4567888877777766543
No 187
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.04 E-value=0.0094 Score=68.08 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=53.2
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
.-+-|+|..|+|||+||+++.+. +...--..+|++ ...+...+...+.... ...++...+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~~-----------~~~f~~~~~~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSGE-----------MQRFRQFYRN 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcch-----------HHHHHHHccc
Confidence 45789999999999999999964 333222234444 2334445554443211 1124444443
Q ss_pred CeEEEEEcCCCChh---hH-hHhhhhCCC-CCCCcEEEEEecc
Q 048834 268 KRYLVILTDVRTPD---IW-EIIKFLFPN-SLSGSRVILSFRE 305 (1108)
Q Consensus 268 kr~LlVLDDVw~~~---~~-~~l~~~~~~-~~~GSrIiiTTR~ 305 (1108)
.-+|++||+.... .+ +.+...+.. ...|..||+||..
T Consensus 203 -~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 203 -VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred -CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 3477889986431 11 223322211 1245678888853
No 188
>PRK07667 uridine kinase; Provisional
Probab=96.01 E-value=0.0061 Score=61.48 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=29.5
Q ss_pred hhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 173 VKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 173 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+.+.+.+........+|||-|.+|.||||+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555666666778999999999999999999983
No 189
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.28 Score=55.07 Aligned_cols=177 Identities=12% Similarity=0.134 Sum_probs=95.0
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-------------------eeEEEE
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-------------------YHAWAN 423 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-------------------~~~w~~ 423 (1108)
.+++|-+...+.+.+.+... ..+-++.+.|..|+||||+|+.+.....-..... ...+..
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 35578888777777776543 4567889999999999999998865421000000 000000
Q ss_pred eccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCCh--hhHHHHHHHhCCCCCCCCCE
Q 048834 424 VDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHLP--GAWYELQRIFSPNTSSSGSR 500 (1108)
Q Consensus 424 v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~~s~ 500 (1108)
.+..... .+...+...+.. -..++.-++++|++... ..++.+...+. ......+
T Consensus 95 --~~~~~~v-------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE--e~~~~~~ 151 (363)
T PRK14961 95 --AASRTKV-------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE--EPPQHIK 151 (363)
T ss_pred --ccccCCH-------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh--cCCCCeE
Confidence 1100001 011111111110 01245568999998763 34666655554 1223455
Q ss_pred EEEEcC-chHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 501 VILLTR-EAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 501 iivttr-~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
+++++. ...+.....+....+++.+++.++..+.+...+.... ...-.+....++..++|-|.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMR 215 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 555544 3444444445567889999999988877765442221 11112233456667777654
No 190
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.00 E-value=0.0072 Score=60.34 Aligned_cols=118 Identities=12% Similarity=0.035 Sum_probs=54.0
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEE--c--CCC--C---CHH-------HHHHHHHHHhCCCchhH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFL--V--PPR--L---DKR-------ELAINILNQFAPTDVEL 249 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~--~--s~~--~---~~~-------~l~~~i~~~~~~~~~~~ 249 (1108)
+..+|.+.|++|.|||.||-+.--+.-....|+..+++. | .++ | +.. .=..+.++.+.....-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~ 97 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLE 97 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHH
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHH
Confidence 345799999999999999866553333347788777663 1 111 1 100 11233333333222111
Q ss_pred HHHhhcchHHHHHHHccCCe---EEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 250 EEKLLESPQTVVHNYLIHKR---YLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 250 ~~~~~~~l~~~l~~~l~~kr---~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
...+...+.-.--..++|+. -+|++|+.-+ ..++..+.. ..+.|||||++=-..
T Consensus 98 ~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~~ 156 (205)
T PF02562_consen 98 ELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE---
T ss_pred HHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCce
Confidence 11000000000123456654 4889999865 456666654 457899999985433
No 191
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.00 E-value=0.019 Score=59.77 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=40.7
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHH
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELA 235 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~ 235 (1108)
+.+..+|..+=..-+++-|+|.+|+||||+|.++. ......-..++|++.. .++..++.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la--~~~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLA--VEAAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHH--HHHHHCCCeEEEEECC-CCCHHHHH
Confidence 34444454444556789999999999999998887 3344445667888876 66666544
No 192
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.00 E-value=0.011 Score=57.11 Aligned_cols=112 Identities=21% Similarity=0.173 Sum_probs=74.1
Q ss_pred CCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCcee--eCCCcccccce
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWT--IGKEAMPELRE 1032 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~ 1032 (1108)
.....++|++|.+.. ...+..++.|.+|.|.+|.++.- -+.-...+|+|..|.+.++. +..+. ..+..||.|+.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 356667777776532 33355778888888888877651 22233457788888888765 33332 34567889999
Q ss_pred EeecccCCCCC----CcccCCCCCCCEEEEecCchHHHHHHH
Q 048834 1033 LEIRCCKKMKK----PIELEKLSSLKELTLTDMKKSFEYEVR 1070 (1108)
Q Consensus 1033 L~i~~c~~l~l----p~~l~~l~~L~~L~l~~c~~~~~~~~~ 1070 (1108)
|.+-+|+.-.. --.+..+|+|+.|++++-.....+++.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~ 159 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAE 159 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHH
Confidence 99999887652 224567889999999887754444333
No 193
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.99 E-value=0.011 Score=67.75 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=56.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCc--ceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQ--CRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~--~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
..-+-|+|..|+|||+|++++.+. +..... .++|++ ..++...+...+.... +. ...+++.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~-~~~~~~~ 203 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KE-IEQFKNE 203 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hH-HHHHHHH
Confidence 345889999999999999999863 333222 223333 2356666666553210 11 1223444
Q ss_pred ccCCeEEEEEcCCCCh---hhH-hHhhhhCCC-CCCCcEEEEEec
Q 048834 265 LIHKRYLVILTDVRTP---DIW-EIIKFLFPN-SLSGSRVILSFR 304 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~~---~~~-~~l~~~~~~-~~~GSrIiiTTR 304 (1108)
++ +.-+||+||+... ..| +.+...+.. ...|..||+|+.
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 44 3457888999642 233 444433332 234567888865
No 194
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.028 Score=62.27 Aligned_cols=168 Identities=16% Similarity=0.231 Sum_probs=103.1
Q ss_pred eeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCccccccCce--eEEEEeccCCCcCHHHHHHHHH
Q 048834 365 LVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY--HAWANVDVSHDFDLRKVFINIL 440 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~--~~w~~v~~s~~~~~~~l~~~il 440 (1108)
+.+|+.++.+++..+... ++.|.-+.++|..|.|||..++.+... ++..... ...++ +-......+++..++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yIN--c~~~~t~~~i~~~i~ 94 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYIN--CLELRTPYQVLSKIL 94 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEe--eeeCCCHHHHHHHHH
Confidence 678999999999988765 666777999999999999999999876 3333222 34444 666777888999999
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHh--cCCceEEEEeCCCChhhH--HHHHHHhCCCCCCCCCEEE--EEcCchHHHHhc
Q 048834 441 EQVTRVKIAEELALNELESRLIRLF--QSKRYLIVLDDVHLPGAW--YELQRIFSPNTSSSGSRVI--LLTREAFVARAF 514 (1108)
Q Consensus 441 ~~l~~~~~~~~~~~~~l~~~l~~~l--~~k~~llvlDdv~~~~~~--~~l~~~~~~~~~~~~s~ii--vttr~~~v~~~~ 514 (1108)
.+++..+... ++.......+.+.+ .++.+++|+|+++....- +.+...+.-... ..+++. ..+-+.......
T Consensus 95 ~~~~~~p~~g-~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~-~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPLTG-DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE-NKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCCCC-CchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc-cceeEEEEEEeccHHHHHHh
Confidence 9887433322 34444444444444 357889999998752222 344444431111 244433 333333333322
Q ss_pred CC------CcceEecCCCChhhhHHHHhhh
Q 048834 515 SP------SIILLQLRPLNVDESWELFLKK 538 (1108)
Q Consensus 515 ~~------~~~~~~~~~L~~~~~~~lf~~~ 538 (1108)
.. ....+...+-+.++..+.+...
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R 202 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRER 202 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHH
Confidence 21 1122556667777776666544
No 195
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.23 Score=58.22 Aligned_cols=178 Identities=17% Similarity=0.185 Sum_probs=95.8
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCce-----------------eEEEEec
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY-----------------HAWANVD 425 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~-----------------~~w~~v~ 425 (1108)
.+++|.+...+.+.+.+... ..+.++.++|..|+||||+|+.+.....-...... ...+.++
T Consensus 15 ddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEID 93 (702)
T PRK14960 15 NELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEID 93 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEec
Confidence 35678888878787777643 44678899999999999999887554211000000 0001100
Q ss_pred cCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEE
Q 048834 426 VSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVI 502 (1108)
Q Consensus 426 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ii 502 (1108)
.+.....++ ...+..... .-..++.-++|+|+++. ....+.+...+. ... .+..+|
T Consensus 94 AAs~~~Vdd-------------------IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP-~~v~FI 152 (702)
T PRK14960 94 AASRTKVED-------------------TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPP-EHVKFL 152 (702)
T ss_pred ccccCCHHH-------------------HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCC-CCcEEE
Confidence 111111111 111111111 11235667899999876 345666666554 112 345555
Q ss_pred EEcCc-hHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 503 LLTRE-AFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 503 vttr~-~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
+++.+ ..+..........+++..++.++....+...+..... ..-......+++.++|-+
T Consensus 153 LaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~id~eAL~~IA~~S~GdL 213 (702)
T PRK14960 153 FATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-AADQDAIWQIAESAQGSL 213 (702)
T ss_pred EEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCH
Confidence 55543 3443333345678899999999888877665533221 111223344666666644
No 196
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.95 E-value=0.018 Score=68.08 Aligned_cols=40 Identities=3% Similarity=0.096 Sum_probs=29.4
Q ss_pred hhhhhHHHhhhcC---CCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 171 DEVKGLAELILSD---YPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 171 ~~~~~~~~~l~~~---~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..++++..|+... ....+++.|+|..|+||||+++.+.+.
T Consensus 91 ~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 91 KKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4445566666542 234467999999999999999999854
No 197
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.94 E-value=0.11 Score=49.71 Aligned_cols=41 Identities=27% Similarity=0.313 Sum_probs=31.8
Q ss_pred eehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 367 GLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 367 g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
|++..+..+...+.... ...+.++|.+|+|||++++.+++.
T Consensus 2 ~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 2 GQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred chHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 45667777777765543 346889999999999999999876
No 198
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.93 E-value=0.0048 Score=61.53 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=23.0
Q ss_pred CCCCCceEeEEccCCCChhhHHHHhcCCcccccCC
Q 048834 183 DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF 217 (1108)
Q Consensus 183 ~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F 217 (1108)
..+.+.-+-.||++|+||||||+.|-+. ....|
T Consensus 46 r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~ 78 (233)
T PF05496_consen 46 RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF 78 (233)
T ss_dssp TTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred cCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence 3456777899999999999999999854 44444
No 199
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.28 Score=56.84 Aligned_cols=177 Identities=18% Similarity=0.183 Sum_probs=97.7
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccc----------ccCce-----------eEEE
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIR----------QNFEY-----------HAWA 422 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~----------~~f~~-----------~~w~ 422 (1108)
+++|-+..+..+...+.. +..+.++.+.|..|+||||+|+.++....-. .|..+ ..+.
T Consensus 22 dliGq~~vv~~L~~ai~~-~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILN-DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE
Confidence 456777777766665544 3456788999999999999999986542110 00000 0011
Q ss_pred EeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCC
Q 048834 423 NVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGS 499 (1108)
Q Consensus 423 ~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s 499 (1108)
.++.......+ +...+..... .-+.+++.++|+|+++. ...++.+...+. .....+
T Consensus 101 eidaas~~~vd-------------------~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE--epp~~~ 159 (507)
T PRK06645 101 EIDAASKTSVD-------------------DIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE--EPPPHI 159 (507)
T ss_pred EeeccCCCCHH-------------------HHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh--hcCCCE
Confidence 10111111111 1111111111 11345677899999886 456777766654 122344
Q ss_pred EEE-EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 500 RVI-LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 500 ~ii-vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
.+| .|++...+..........+++..++.++....+...+....... ..+....++..++|-+
T Consensus 160 vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 160 IFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSA 223 (507)
T ss_pred EEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCH
Confidence 444 45565566555555567889999999998888876654322111 1222334666676654
No 200
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.91 E-value=0.017 Score=62.98 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=57.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCc--CHHHHHHHHHHHHhhhhhhhh-----hhHHHHHH
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDF--DLRKVFINILEQVTRVKIAEE-----LALNELES 459 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~--~~~~l~~~il~~l~~~~~~~~-----~~~~~l~~ 459 (1108)
....|+|.+|+||||+++.+++..... +|+...|+. ..... +..++++.+...+-....+.. ........
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~Vv--LIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVL--LIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEE--EeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 367788999999999999999984333 899999998 66665 666777766532221111111 11111111
Q ss_pred HHHHH-hcCCceEEEEeCCCC
Q 048834 460 RLIRL-FQSKRYLIVLDDVHL 479 (1108)
Q Consensus 460 ~l~~~-l~~k~~llvlDdv~~ 479 (1108)
.-+.+ ..++..++++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 11111 368999999999864
No 201
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.91 E-value=0.023 Score=54.32 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=51.6
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCch---hHHHHhhcchHHHHHHHc
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDV---ELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~---~~~~~~~~~l~~~l~~~l 265 (1108)
||-++|++|+||||+|+.+... .. ++.++. ..+...+...-..... .......+.+...++..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~--~~-------~~~i~~----D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 67 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR--LG-------AVVISQ----DEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKAL 67 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH--ST-------EEEEEH----HHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH--CC-------CEEEeH----HHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998732 11 333332 2233322221111100 111111222334556666
Q ss_pred cCCeEEEEEcC-CCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhh
Q 048834 266 IHKRYLVILTD-VRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMH 311 (1108)
Q Consensus 266 ~~kr~LlVLDD-Vw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~ 311 (1108)
....- +|+|+ .+....++.+.......+-.-++|..+-+.+++..
T Consensus 68 ~~g~~-~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~ 113 (143)
T PF13671_consen 68 RNGNS-VVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRE 113 (143)
T ss_dssp HTT-E-EEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHH
T ss_pred HcCCC-ceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHH
Confidence 55544 55564 44555555555544333323455555445555543
No 202
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.2 Score=57.76 Aligned_cols=183 Identities=17% Similarity=0.164 Sum_probs=95.3
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccc--------------------cCceeEEE
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQ--------------------NFEYHAWA 422 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~--------------------~f~~~~w~ 422 (1108)
.+++|.+.....+.+.+. .+..|.++.++|..|+||||+|+.+.....-.. +.+.. .+
T Consensus 14 ~divGq~~i~~~L~~~i~-~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~-el 91 (472)
T PRK14962 14 SEVVGQDHVKKLIINALK-KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI-EL 91 (472)
T ss_pred HHccCcHHHHHHHHHHHH-cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE-EE
Confidence 345787766666655554 344567789999999999999998865421100 00111 11
Q ss_pred EeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCC
Q 048834 423 NVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGS 499 (1108)
Q Consensus 423 ~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s 499 (1108)
. .+.....+.+ +.+. .... .-+.++.-++++|+++. ....+.+...+. +.. ...
T Consensus 92 ~--aa~~~gid~i-R~i~------------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~-~~v 148 (472)
T PRK14962 92 D--AASNRGIDEI-RKIR------------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPP-SHV 148 (472)
T ss_pred e--CcccCCHHHH-HHHH------------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCC-CcE
Confidence 1 1111111111 1111 1111 01234567899999875 334455555543 111 233
Q ss_pred EEE-EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHc-CCchhHHHHHHH
Q 048834 500 RVI-LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKC-GGLPLAICVLGG 571 (1108)
Q Consensus 500 ~ii-vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~-~glPlal~~~~~ 571 (1108)
.++ .|+....+..........+.+.+++.++....+...+..... .--.+....++..+ ++++.++..+..
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 333 344434555555556678899999999888877665432211 11122233455544 445666655554
No 203
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.89 E-value=0.014 Score=67.05 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=55.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccC-Ccc-eeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNH-FQC-RAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~-F~~-~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
.-+-|||..|+|||+||+++.|. +... .+. ++|++. .++..++...+.... .+ ..++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~~-------~~----~f~~~~ 191 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGK-------LN----EFREKY 191 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhccc-------HH----HHHHHH
Confidence 34899999999999999999964 4443 333 345543 345555655553221 11 133334
Q ss_pred cCCeEEEEEcCCCCh---hhH-hHhhhhCCC-CCCCcEEEEEec
Q 048834 266 IHKRYLVILTDVRTP---DIW-EIIKFLFPN-SLSGSRVILSFR 304 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~---~~~-~~l~~~~~~-~~~GSrIiiTTR 304 (1108)
+.+.-+|++||+... ..+ +.+...+.. ...|..||+||.
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 334558899999742 212 222222211 123557888875
No 204
>PTZ00202 tuzin; Provisional
Probab=95.87 E-value=0.11 Score=57.15 Aligned_cols=170 Identities=9% Similarity=0.055 Sum_probs=93.6
Q ss_pred cccCCCCceeeehHHHHHHHHHHhCC-CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHH
Q 048834 357 EILGPEAELVGLKDQLLRLAQLTMSS-SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKV 435 (1108)
Q Consensus 357 ~~~~~~~~~~g~~~~l~~i~~~l~~~-~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l 435 (1108)
..+.....|+||+.++..+...+... .+.|.++.+.|.+|+||||+++.+..... ...++. +.. ...++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~v---Npr-g~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFV---DVR-GTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEE---CCC-CHHHH
Confidence 35567788999999999998888654 44578999999999999999988876532 112222 222 56889
Q ss_pred HHHHHHHHhhhhhhhhh-hHHHHHHHHHHHhc--CCceEEEEeCCCChhhHHHHHH-HhCCCCCCCCCEEEEEcCchHHH
Q 048834 436 FINILEQVTRVKIAEEL-ALNELESRLIRLFQ--SKRYLIVLDDVHLPGAWYELQR-IFSPNTSSSGSRVILLTREAFVA 511 (1108)
Q Consensus 436 ~~~il~~l~~~~~~~~~-~~~~l~~~l~~~l~--~k~~llvlDdv~~~~~~~~l~~-~~~~~~~~~~s~iivttr~~~v~ 511 (1108)
+..++.+|+..+..... -...+...+.+.-. ++..++|+-= .+......+.. ...--..-.-|.|++.--.+.+.
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcc
Confidence 99999999963332221 12333333333222 4555555432 11111111111 00000112345555443333322
Q ss_pred Hhc--CCCcceEecCCCChhhhHHHHhh
Q 048834 512 RAF--SPSIILLQLRPLNVDESWELFLK 537 (1108)
Q Consensus 512 ~~~--~~~~~~~~~~~L~~~~~~~lf~~ 537 (1108)
... -..-..|-+..++.++|..+-.+
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhh
Confidence 111 12234566777777777666544
No 205
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.86 E-value=0.021 Score=66.21 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=54.0
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcc--eeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQC--RAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~--~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
..-+-|+|..|+|||+||+++.+. +..++.. .+|++. ..+..++...+.... ...+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~~-----------~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNNT-----------MEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcCc-----------HHHHHHH
Confidence 345889999999999999999964 5555422 234432 233344444442211 1123344
Q ss_pred ccCCeEEEEEcCCCCh---hhH-hHhhhhCCC-CCCCcEEEEEecc
Q 048834 265 LIHKRYLVILTDVRTP---DIW-EIIKFLFPN-SLSGSRVILSFRE 305 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~~---~~~-~~l~~~~~~-~~~GSrIiiTTR~ 305 (1108)
+++ --+||||||... +.+ +.+...+.. ...|..||+||..
T Consensus 209 ~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 209 YRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred Hhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 443 347889999642 112 233332221 1235568887753
No 206
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.85 E-value=0.21 Score=52.12 Aligned_cols=166 Identities=17% Similarity=0.261 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhh
Q 048834 369 KDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKI 448 (1108)
Q Consensus 369 ~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~ 448 (1108)
...++.+.+++.. ..+..+.++|..|+|||++|+.+++.. ........++. .+. +....
T Consensus 23 ~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~--~~~----------~~~~~----- 81 (226)
T TIGR03420 23 AELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLP--LAE----------LAQAD----- 81 (226)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEe--HHH----------HHHhH-----
Confidence 3455555555433 335678899999999999999987652 11222233333 211 11000
Q ss_pred hhhhhHHHHHHHHHHHhcCCceEEEEeCCCChh---hH-HHHHHHhCCCCCCCCCEEEEEcCchH---------HHHhcC
Q 048834 449 AEELALNELESRLIRLFQSKRYLIVLDDVHLPG---AW-YELQRIFSPNTSSSGSRVILLTREAF---------VARAFS 515 (1108)
Q Consensus 449 ~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~---~~-~~l~~~~~~~~~~~~s~iivttr~~~---------v~~~~~ 515 (1108)
. .+...+. +.-++++||++... .| +.+...+.. ....+..+++|+.... +.....
T Consensus 82 ------~----~~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~-~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 ------P----EVLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNR-VREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred ------H----HHHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHH-HHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 0 0111122 23488999987532 23 334443321 1113347788776432 111111
Q ss_pred CCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHH
Q 048834 516 PSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVL 569 (1108)
Q Consensus 516 ~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~ 569 (1108)
....+.+.+++.++...++........ -..-.+....+...+.|.+..+..+
T Consensus 150 -~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 150 -WGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred -cCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 134678888888877777654331111 0111122234444566666544443
No 207
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.045 Score=62.19 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEe
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSF 303 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTT 303 (1108)
+++-++|+|++.. ...++.|...+....+.+.+|++|
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4555778899875 456888888777666677777655
No 208
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.83 E-value=0.023 Score=58.38 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=37.0
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHH
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~ 236 (1108)
+.-+++-|+|.+|+||||+|..+. ......-...+|+.... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~--~~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILA--VNAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH--HHHHhCCCeEEEEECCC-CCHHHHHH
Confidence 455789999999999999998876 33444556788998865 67666554
No 209
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.81 E-value=0.027 Score=59.24 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=39.1
Q ss_pred hhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccC----CcceeEEEcCCCCCHHHHHH
Q 048834 179 LILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNH----FQCRAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 179 ~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~----F~~~~~~~~s~~~~~~~l~~ 236 (1108)
+|..+=..-.++.|+|.+|+||||||.++.-....... -..++|++....++..++..
T Consensus 11 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 11 LLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred hccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 33333345678999999999999999888622111221 35788998877777766543
No 210
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.77 E-value=0.047 Score=57.38 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=73.4
Q ss_pred ceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 048834 385 KYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRL 464 (1108)
Q Consensus 385 ~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 464 (1108)
....+.+||.+|+|||++|+.+.....-.. ..|+. .|-...-..-.++++++-.. ...
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfve--lSAt~a~t~dvR~ife~aq~----------------~~~ 218 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVE--LSATNAKTNDVRDIFEQAQN----------------EKS 218 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEE--EeccccchHHHHHHHHHHHH----------------HHh
Confidence 345778999999999999999877632222 23444 33222212223333333221 123
Q ss_pred hcCCceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEE--EcCchHHHH--hcCCCcceEecCCCChhhhHHHHhhh
Q 048834 465 FQSKRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVIL--LTREAFVAR--AFSPSIILLQLRPLNVDESWELFLKK 538 (1108)
Q Consensus 465 l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iiv--ttr~~~v~~--~~~~~~~~~~~~~L~~~~~~~lf~~~ 538 (1108)
+.+++.++++|+|.....-+ .+.|.+ ....|..++| ||.+..... ..-....++-++.|..++...++.+.
T Consensus 219 l~krkTilFiDEiHRFNksQ--QD~fLP-~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQ--QDTFLP-HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hhcceeEEEeHHhhhhhhhh--hhcccc-eeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 46788999999987522211 122221 3336766665 455443221 12234578889999999888887663
No 211
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.75 E-value=0.38 Score=54.06 Aligned_cols=174 Identities=13% Similarity=0.120 Sum_probs=95.8
Q ss_pred ceeeehHHHHHHHHHHhCCC--------CceEEEEEEcCCCChHHHHHHHHhcCcccc-------------------ccC
Q 048834 364 ELVGLKDQLLRLAQLTMSSS--------SKYFLISVVGVAGSGKTTLVETIYNSSYIR-------------------QNF 416 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~--------~~~~~i~i~G~~g~GKT~la~~~~~~~~~~-------------------~~f 416 (1108)
+++|-+..++.+.+.+.... +.+.++-++|+.|+|||++|..+.....-. .+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 34687777777777776642 157889999999999999998875431000 000
Q ss_pred ceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCC
Q 048834 417 EYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPN 493 (1108)
Q Consensus 417 ~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~ 493 (1108)
| ..++.- .+......+ ...+...... -..+++-++++|+++. ....+.+...+. .
T Consensus 86 D-~~~i~~-~~~~i~i~~-------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE-e 143 (394)
T PRK07940 86 D-VRVVAP-EGLSIGVDE-------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE-E 143 (394)
T ss_pred C-EEEecc-ccccCCHHH-------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh-c
Confidence 1 011110 001111111 1111111111 1234556888899875 334454555443 1
Q ss_pred CCCCCCEEEE-EcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHH
Q 048834 494 TSSSGSRVIL-LTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 494 ~~~~~s~iiv-ttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
.. .+..+++ |+....+.....+....+.+..++.++..+.+....+ . . ......++..++|.|...
T Consensus 144 p~-~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--~-~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 144 PP-PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--V-D---PETARRAARASQGHIGRA 210 (394)
T ss_pred CC-CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--C-C---HHHHHHHHHHcCCCHHHH
Confidence 22 3454544 4454555555556668899999999998887764321 1 1 223455677888877543
No 212
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.75 E-value=0.026 Score=56.28 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 45999999999999999999854
No 213
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.73 E-value=0.0071 Score=56.04 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=25.3
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccC-CcceeEEE
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNH-FQCRAWFL 224 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~-F~~~~~~~ 224 (1108)
|+|.||+|+||||+++.+-+ ..++. |...-|++
T Consensus 8 i~ITG~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred EEEeCCCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 89999999999999999984 34443 66555543
No 214
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.72 E-value=0.11 Score=63.07 Aligned_cols=142 Identities=22% Similarity=0.298 Sum_probs=76.9
Q ss_pred ceeeehHHHH---HHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHH
Q 048834 364 ELVGLKDQLL---RLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINIL 440 (1108)
Q Consensus 364 ~~~g~~~~l~---~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il 440 (1108)
+++|.+..+. .+.+.+. .+ .+..+.++|.+|+||||+|+.+++. ....| ..+..+. .... ++
T Consensus 29 d~vGQe~ii~~~~~L~~~i~-~~-~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~-~~i~----di- 93 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIK-AD-RVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVL-AGVK----DL- 93 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHh-cC-CCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhh-hhhH----HH-
Confidence 4577766654 2333333 32 3345678999999999999999875 33222 2210110 0000 00
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHH--hcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEE--cCch--HHHH
Q 048834 441 EQVTRVKIAEELALNELESRLIRL--FQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILL--TREA--FVAR 512 (1108)
Q Consensus 441 ~~l~~~~~~~~~~~~~l~~~l~~~--l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivt--tr~~--~v~~ 512 (1108)
........+. ..++..++++||++. ..+++.+...+. .+..+++. |.+. .+..
T Consensus 94 --------------r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE-----~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 94 --------------RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE-----NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred --------------HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc-----CceEEEEEecCCChHhhhhh
Confidence 0011111111 124667899999975 455555655443 45555543 3332 1222
Q ss_pred hcCCCcceEecCCCChhhhHHHHhhhh
Q 048834 513 AFSPSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 513 ~~~~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
...+...++.+.+++.++...++...+
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHH
Confidence 233345678899999998888887654
No 215
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.71 E-value=0.046 Score=61.75 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=74.7
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
++.|+|+=++||||+++.+-.. ..+. .+++..-+.. +..++ .+.+... ......
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~~~~~------------------~~~~~~- 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDLLRAY------------------IELKER- 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHHHHHH------------------HHhhcc-
Confidence 8999999999999999766622 2222 4555543322 21111 1122111 111111
Q ss_pred CeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhccccc---cccccchhHHhhhccccc
Q 048834 268 KRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRNLNF---FGGDLNLSFKEMKARYPL 334 (1108)
Q Consensus 268 kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~~~---~~~~~~~~~l~~~~~~~L 334 (1108)
++.+++||.|-....|+.....+.+.++. +|+||+-+-.+........ -...+.+-|++..|-..+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 88999999999999999988888777766 9999988766554332221 134566666666665443
No 216
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.71 E-value=0.033 Score=56.21 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=58.7
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEE---------cCCCCCHHHH--HHHHHHHhCCCchhHH----
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFL---------VPPRLDKREL--AINILNQFAPTDVELE---- 250 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~---------~s~~~~~~~l--~~~i~~~~~~~~~~~~---- 250 (1108)
...+|-++||+|.||||..|.++.+ ....+..-.-+. ..-+.|+++. .++..++.....+..-
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h--l~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH--LHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH--HhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 3456888999999999999999954 444444322222 1223344443 4677777655443211
Q ss_pred ---HHhhcchHHHHHHHccCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEE
Q 048834 251 ---EKLLESPQTVVHNYLIHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVI 300 (1108)
Q Consensus 251 ---~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIi 300 (1108)
....++....+.++-..-++.|| +...|.| .|.|..+||.|.
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~li----DTPGQIE----~FtWSAsGsIIt 140 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLI----DTPGQIE----AFTWSASGSIIT 140 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEE----cCCCceE----EEEecCCccchH
Confidence 12234444445554444344443 3344443 456888888664
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.67 E-value=0.036 Score=57.51 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=53.2
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
...+-++|.+|+|||+||.++.+. ....-..+++++ ..++...+-....... .. ...+.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~--l~~~g~~v~~it------~~~l~~~l~~~~~~~~--------~~-~~~~l~~l~ 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNE--LLLRGKSVLIIT------VADIMSAMKDTFSNSE--------TS-EEQLLNDLS 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEE------HHHHHHHHHHHHhhcc--------cc-HHHHHHHhc
Confidence 346889999999999999999964 333333445554 3444444443321100 01 112333354
Q ss_pred CCeEEEEEcCCCCh--hhHhH--hhhhCCC-CCCCcEEEEEec
Q 048834 267 HKRYLVILTDVRTP--DIWEI--IKFLFPN-SLSGSRVILSFR 304 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~--~~~~~--l~~~~~~-~~~GSrIiiTTR 304 (1108)
+.=+||+||+... ..|+. +-..+.. ....--+||||-
T Consensus 162 -~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 162 -NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred -cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 3457888999753 34542 2222221 122344666665
No 218
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.019 Score=60.38 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=43.9
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
.-+.++|.+|+|||.||.++-|. +...=-.+.|+++ .++.+++...... ......|.+.++.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~----------~~~~~~l~~~l~~ 167 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE----------GRLEEKLLRELKK 167 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc----------CchHHHHHHHhhc
Confidence 33899999999999999999975 4432122345544 3455555554432 1222233343333
Q ss_pred CeEEEEEcCCCC
Q 048834 268 KRYLVILTDVRT 279 (1108)
Q Consensus 268 kr~LlVLDDVw~ 279 (1108)
-=||||||+-.
T Consensus 168 -~dlLIiDDlG~ 178 (254)
T COG1484 168 -VDLLIIDDIGY 178 (254)
T ss_pred -CCEEEEecccC
Confidence 23788999975
No 219
>CHL00176 ftsH cell division protein; Validated
Probab=95.65 E-value=0.049 Score=65.05 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=41.2
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
.+-|-++|.+|.|||+||+++.+. .. .-|+.++.. .+. +...+. . ...+...+.....
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e--~~-----~p~i~is~s----~f~----~~~~g~----~---~~~vr~lF~~A~~ 273 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE--AE-----VPFFSISGS----EFV----EMFVGV----G---AARVRDLFKKAKE 273 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--hC-----CCeeeccHH----HHH----HHhhhh----h---HHHHHHHHHHHhc
Confidence 345889999999999999999854 21 123443311 111 111000 0 1122334455556
Q ss_pred CCeEEEEEcCCCC
Q 048834 267 HKRYLVILTDVRT 279 (1108)
Q Consensus 267 ~kr~LlVLDDVw~ 279 (1108)
+...+|++||++.
T Consensus 274 ~~P~ILfIDEID~ 286 (638)
T CHL00176 274 NSPCIVFIDEIDA 286 (638)
T ss_pred CCCcEEEEecchh
Confidence 7789999999963
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.63 E-value=0.027 Score=61.45 Aligned_cols=37 Identities=8% Similarity=-0.100 Sum_probs=26.4
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVP 226 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s 226 (1108)
.-+-++|..|+|||+||.+|.+. +...--.++|+++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH
Confidence 55999999999999999999854 33322244566543
No 221
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.27 Score=58.37 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=98.1
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHH-
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILE- 441 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~- 441 (1108)
.+++|-+..++.+.+.+.. +..+-++.++|..|+||||+|+.+.....-...... .........+.+..
T Consensus 16 ~divGQe~vv~~L~~~l~~-~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---------~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL-GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---------TPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---------CCCCCCHHHHHHHcC
Confidence 3457888777777776654 345677889999999999999888654211000000 00000000000000
Q ss_pred ------HHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCE-EEEEcCchHHH
Q 048834 442 ------QVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSR-VILLTREAFVA 511 (1108)
Q Consensus 442 ------~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~-iivttr~~~v~ 511 (1108)
.+.........+..++...+. .-..++.-++|+|+++. ....+.+...+- ... ...+ |+.||....+.
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp-~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPP-EHVKFLLATTDPQKLP 163 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCC-CCeEEEEecCCccccc
Confidence 000000000011122222211 11346677999999875 455666665554 112 3344 44555555555
Q ss_pred HhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 512 RAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 512 ~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
....+....+++..++.++....+......... .........++..++|-+.
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMR 215 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 555556688999999999988877665422111 1112233456677777654
No 222
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.073 Score=60.16 Aligned_cols=38 Identities=11% Similarity=-0.001 Sum_probs=26.6
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+.+.+++..+ .-...+-++|+.|+||||+|+.+.+
T Consensus 24 ~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~ 61 (367)
T PRK14970 24 HITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILAR 61 (367)
T ss_pred HHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4445566666543 2234688999999999999988863
No 223
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.61 E-value=0.0052 Score=61.98 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=65.0
Q ss_pred CCcceEEEEeccCCCCCccccccccccceeeeccc--cccCceeeeCCCCCCcccEEEeccCCCCCcee--eCCCccccc
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAH--SFMGEEMTCGDGGFPKLRVLKLWVQKELREWT--IGKEAMPEL 1030 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp--~~~~~l~~L 1030 (1108)
..|+.|++.++.++. ...+-.+|+|+.|.++.| ..... +......+|+|++|.++++. ++.+. .....+.+|
T Consensus 43 ~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceee--cccCCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence 366777776665542 222445778888888887 33332 44445566888888888775 32211 124467778
Q ss_pred ceEeecccCCCCC--C--cccCCCCCCCEEEEecCchH
Q 048834 1031 RELEIRCCKKMKK--P--IELEKLSSLKELTLTDMKKS 1064 (1108)
Q Consensus 1031 ~~L~i~~c~~l~l--p--~~l~~l~~L~~L~l~~c~~~ 1064 (1108)
..|++.+|+...+ + ..+.-+++|++|+-.++...
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 8888888877662 1 12344677777777666543
No 224
>PTZ00301 uridine kinase; Provisional
Probab=95.61 E-value=0.0097 Score=60.32 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=23.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQ 218 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~ 218 (1108)
.+|||.|..|+||||||+.+. .++...+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~--~~l~~~~~ 32 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIV--SELMAHCG 32 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHH--HHHHhhcC
Confidence 579999999999999999887 34544443
No 225
>PRK06696 uridine kinase; Validated
Probab=95.57 E-value=0.012 Score=60.93 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=29.2
Q ss_pred hhhhHHHhhhc-CCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 172 EVKGLAELILS-DYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 172 ~~~~~~~~l~~-~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-+++|.+.+.. ......+|+|.|.+|+||||||+.+..
T Consensus 6 ~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 6 LIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 34455555543 455778999999999999999999983
No 226
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.55 E-value=0.34 Score=49.81 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEE
Q 048834 386 YFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWAN 423 (1108)
Q Consensus 386 ~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~ 423 (1108)
|-.+.|+|.+|.|||++...+... ....|....+..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 557899999999999999998876 777887776665
No 227
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.55 E-value=0.093 Score=59.21 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=25.8
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhc
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..++.+.+++..+. -...+-++|..|+||||+|+.+.
T Consensus 21 ~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 21 HIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred HHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHH
Confidence 44556666664432 22356789999999999997775
No 228
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.011 Score=58.88 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.9
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+.+|||-|..|+||||+|+.++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~ 29 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELS 29 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHH
Confidence 456789999999999999999999
No 229
>PRK13695 putative NTPase; Provisional
Probab=95.54 E-value=0.0064 Score=60.37 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.2
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
|+|+|.+|+|||||++.+++.
T Consensus 3 i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998854
No 230
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.54 E-value=0.036 Score=54.58 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=58.0
Q ss_pred ceEeEEccCCCChhhHHHHhcCCc-cc--cc---CCcceeEEEcCCCCCHHHHHHHHHHHhCCCch--hHHHHhhc---c
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCD-DI--KN---HFQCRAWFLVPPRLDKRELAINILNQFAPTDV--ELEEKLLE---S 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~-~~--~~---~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~---~ 256 (1108)
.+++|+|..|+|||||.+.+..+. ++ .. .|...-...+.+ .+.++.+..... +.....+. .
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q--------~~~l~~~~L~~~~~~~~~~~LSgGq~ 93 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQ--------LQFLIDVGLGYLTLGQKLSTLSGGEL 93 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhH--------HHHHHHcCCCccccCCCcCcCCHHHH
Confidence 459999999999999999996321 11 11 111111112222 345555543211 11111111 1
Q ss_pred hHHHHHHHccCC--eEEEEEcCCCC---hhhHhHhhhhCCC-CCCCcEEEEEecchhhhh
Q 048834 257 PQTVVHNYLIHK--RYLVILTDVRT---PDIWEIIKFLFPN-SLSGSRVILSFREADAAM 310 (1108)
Q Consensus 257 l~~~l~~~l~~k--r~LlVLDDVw~---~~~~~~l~~~~~~-~~~GSrIiiTTR~~~Va~ 310 (1108)
-.-.+.+.+-.+ .=+++||+--. ....+.+...+.. ...|.-||++|.+.+.+.
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122344555555 56777788754 2222333322221 124777889998887664
No 231
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.53 E-value=0.4 Score=53.15 Aligned_cols=178 Identities=19% Similarity=0.207 Sum_probs=89.4
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQV 443 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l 443 (1108)
+++|.+..++.+...+.... +..+.++|..|+|||++++.+.+...- ..+ ...++.+..+...... ...+....+
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~-~~~~i~~~~~~~~~~~-~~~~~i~~~ 92 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYG-EDW-RENFLELNASDERGID-VIRNKIKEF 92 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcC-Ccc-ccceEEeccccccchH-HHHHHHHHH
Confidence 45788888888888775532 234689999999999999988765211 111 1112221112111111 111111111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCc-hHHHHhcCCCcce
Q 048834 444 TRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTRE-AFVARAFSPSIIL 520 (1108)
Q Consensus 444 ~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~-~~v~~~~~~~~~~ 520 (1108)
.. . .......+-++++|++.. ......+...+. . ....+.+++++.. ..+..........
T Consensus 93 ~~--------------~-~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~-~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 AR--------------T-APVGGAPFKIIFLDEADNLTSDAQQALRRTME-M-YSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred Hh--------------c-CCCCCCCceEEEEeCcccCCHHHHHHHHHHHh-c-CCCCCeEEEEeCCccccchhHHHHhhe
Confidence 00 0 000113356889999865 333445555543 2 2244566665532 2222222223456
Q ss_pred EecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 521 LQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 521 ~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
+++.+++.++....+...+..... .--.+....+++.++|-+.
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r 198 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMR 198 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 788889888887777655432221 1112234455666666554
No 232
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.50 E-value=0.031 Score=65.14 Aligned_cols=36 Identities=17% Similarity=-0.047 Sum_probs=24.5
Q ss_pred hhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhc
Q 048834 172 EVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 172 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-++.+.+++..+. -..-+-++|+.|+||||+|+.+-
T Consensus 24 iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 24 IKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred HHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHH
Confidence 3344555553332 22457799999999999998875
No 233
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=95.50 E-value=0.07 Score=61.95 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=31.6
Q ss_pred eehHHHHHHHHHHhCC------CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 367 GLKDQLLRLAQLTMSS------SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 367 g~~~~l~~i~~~l~~~------~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
|.+..++.+.+.+... ...+..+.++|.+++|||++...+...
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~ 195 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGE 195 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCC
Confidence 5666666666666432 123567999999999999999998765
No 234
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.49 E-value=0.028 Score=59.86 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=27.7
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~ 236 (1108)
|-++|.+|+||||||+++.+ .... ..++++.+...+..+++.
T Consensus 24 vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 24 VHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLVG 65 (262)
T ss_pred EEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHhh
Confidence 56899999999999999973 2221 234555555555555443
No 235
>PRK00093 GTP-binding protein Der; Reviewed
Probab=95.49 E-value=0.18 Score=58.63 Aligned_cols=25 Identities=20% Similarity=0.500 Sum_probs=21.7
Q ss_pred ceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 385 KYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 385 ~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
.+..+.++|.+++||||+...+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~ 196 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE 196 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999988654
No 236
>PRK04195 replication factor C large subunit; Provisional
Probab=95.47 E-value=0.16 Score=59.54 Aligned_cols=172 Identities=17% Similarity=0.218 Sum_probs=92.0
Q ss_pred CceeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINIL 440 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il 440 (1108)
.+++|.+...+.+..++... +..+..+.++|.+|+|||++|+.+++.. .+....+ ..+.... ......+.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----~~~~iel---nasd~r~-~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----GWEVIEL---NASDQRT-ADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCCEEEE---ccccccc-HHHHHHHH
Confidence 34678888888888887653 2237789999999999999999988762 1222222 1332211 11122222
Q ss_pred HHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCCh------hhHHHHHHHhCCCCCCCCCEEEEEcCch-HHHH-
Q 048834 441 EQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLP------GAWYELQRIFSPNTSSSGSRVILLTREA-FVAR- 512 (1108)
Q Consensus 441 ~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~------~~~~~l~~~~~~~~~~~~s~iivttr~~-~v~~- 512 (1108)
..... ....+..++.++++|+++.. .....+...+.. .+..+|+++... ....
T Consensus 86 ~~~~~---------------~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~----~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 86 GEAAT---------------SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK----AKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHhhc---------------cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc----CCCCEEEeccCccccchh
Confidence 11110 00111136779999998763 234555554431 233455444322 2211
Q ss_pred hcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCc
Q 048834 513 AFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGL 562 (1108)
Q Consensus 513 ~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 562 (1108)
........+.+..++..+....+...+...... .-......+++.++|-
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GD 195 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGD 195 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCC
Confidence 233344677888888887777766544222211 1123344555666653
No 237
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.47 E-value=0.086 Score=64.78 Aligned_cols=39 Identities=8% Similarity=0.165 Sum_probs=27.0
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
.+++-++|||++.. ...++.|+..+..-...+.+|++|.
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 34444677899985 5568888888876666777775554
No 238
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.46 E-value=0.092 Score=61.66 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=26.0
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
.+++-+||+|++.. ...++.|...+..-.....+|++|.+
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~ 158 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTE 158 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCC
Confidence 45666888999975 35577777766544445666665544
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.46 E-value=0.011 Score=58.41 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=39.9
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
.-+.|+|..|+|||.||.++.+. -+...+ .+.|+.+ .+++..+-..-.. ..... +.+.+.+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~-~~~~g~-~v~f~~~------~~L~~~l~~~~~~----------~~~~~-~~~~l~~ 108 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANE-AIRKGY-SVLFITA------SDLLDELKQSRSD----------GSYEE-LLKRLKR 108 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH-HHHTT---EEEEEH------HHHHHHHHCCHCC----------TTHCH-HHHHHHT
T ss_pred eEEEEEhhHhHHHHHHHHHHHHH-hccCCc-ceeEeec------Cceeccccccccc----------cchhh-hcCcccc
Confidence 34899999999999999999853 122222 2456653 3444444322111 11111 2233443
Q ss_pred CeEEEEEcCCCC
Q 048834 268 KRYLVILTDVRT 279 (1108)
Q Consensus 268 kr~LlVLDDVw~ 279 (1108)
- =||||||+-.
T Consensus 109 ~-dlLilDDlG~ 119 (178)
T PF01695_consen 109 V-DLLILDDLGY 119 (178)
T ss_dssp S-SCEEEETCTS
T ss_pred c-cEecccccce
Confidence 3 4677999975
No 240
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.44 E-value=0.095 Score=50.05 Aligned_cols=117 Identities=13% Similarity=-0.006 Sum_probs=63.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEc---CCCCCHHHHHHHHHHHh-----CC------CchhHHHHh
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLV---PPRLDKRELAINILNQF-----AP------TDVELEEKL 253 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~---s~~~~~~~l~~~i~~~~-----~~------~~~~~~~~~ 253 (1108)
..|-|++-.|.||||+|-.+. .+...+=-.+.++.+ ....+...+++.+ ..+ .. .........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~--~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLA--LRALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHH--HHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 357888899999999987765 333333222233332 2234555544443 000 00 000111111
Q ss_pred hcchHHHHHHHccC-CeEEEEEcCCCCh-----hhHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 254 LESPQTVVHNYLIH-KRYLVILTDVRTP-----DIWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 254 ~~~l~~~l~~~l~~-kr~LlVLDDVw~~-----~~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
........++.+.. +-=|||||++-.. -..+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233445555554 4459999999753 224555555555566789999999854
No 241
>PLN03025 replication factor C subunit; Provisional
Probab=95.42 E-value=0.21 Score=55.05 Aligned_cols=176 Identities=21% Similarity=0.271 Sum_probs=85.3
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQV 443 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l 443 (1108)
+++|-+..++.+.+.+.. +..| .+.++|.+|+|||++|..+..... ...|.. ....+..+.....+ ..++....+
T Consensus 14 ~~~g~~~~~~~L~~~~~~-~~~~-~lll~Gp~G~GKTtla~~la~~l~-~~~~~~-~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARD-GNMP-NLILSGPPGTGKTTSILALAHELL-GPNYKE-AVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred HhcCcHHHHHHHHHHHhc-CCCc-eEEEECCCCCCHHHHHHHHHHHHh-cccCcc-ceeeecccccccHH-HHHHHHHHH
Confidence 456766666666655443 3334 466899999999999998866521 111111 11121122222111 112211111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCc-hHHHHhcCCCcce
Q 048834 444 TRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTRE-AFVARAFSPSIIL 520 (1108)
Q Consensus 444 ~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~-~~v~~~~~~~~~~ 520 (1108)
..... ....++.-++++|+++. ....+.+...+. .....+++++++.. ..+..........
T Consensus 89 ~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE--~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 89 AQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTME--IYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred Hhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHh--cccCCceEEEEeCCccccchhHHHhhhc
Confidence 10000 00023467899999876 333344444332 22245666665533 2222222233457
Q ss_pred EecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCC
Q 048834 521 LQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGG 561 (1108)
Q Consensus 521 ~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 561 (1108)
+++.+++.++....+...+......-. .+....++..++|
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~g 192 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADG 192 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 788888888877777655432221111 2233445555555
No 242
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.42 E-value=0.021 Score=61.70 Aligned_cols=98 Identities=10% Similarity=0.081 Sum_probs=57.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
..-+-|+|..|+|||.||.++.|. ....=-.+.|++++ .+..++-...... .....+. .++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~--l~~~g~~v~~~~~~------~l~~~lk~~~~~~----------~~~~~l~-~l~ 216 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE--LAKKGVSSTLLHFP------EFIRELKNSISDG----------SVKEKID-AVK 216 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEEEHH------HHHHHHHHHHhcC----------cHHHHHH-Hhc
Confidence 345889999999999999999965 33332334566654 3444444443211 1122222 233
Q ss_pred CCeEEEEEcCCCCh--hhHh--HhhhhC-CCC-CCCcEEEEEec
Q 048834 267 HKRYLVILTDVRTP--DIWE--IIKFLF-PNS-LSGSRVILSFR 304 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~--~~~~--~l~~~~-~~~-~~GSrIiiTTR 304 (1108)
+-=||||||+-.+ ..|. .+.... ... ..+-.+|+||-
T Consensus 217 -~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 -EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 4457899999743 4463 354443 322 34566777775
No 243
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.42 E-value=0.94 Score=54.03 Aligned_cols=198 Identities=19% Similarity=0.224 Sum_probs=106.9
Q ss_pred CCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHH
Q 048834 362 EAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILE 441 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~ 441 (1108)
..+.+-|+..+.. +.. ...-+.+.+..++|.||||++-.+... ...-....|.+++.+ +.+...+....+.
T Consensus 18 ~~~~v~R~rL~~~----L~~-~~~~RL~li~APAGfGKttl~aq~~~~---~~~~~~v~Wlslde~-dndp~rF~~yLi~ 88 (894)
T COG2909 18 PDNYVVRPRLLDR----LRR-ANDYRLILISAPAGFGKTTLLAQWREL---AADGAAVAWLSLDES-DNDPARFLSYLIA 88 (894)
T ss_pred cccccccHHHHHH----Hhc-CCCceEEEEeCCCCCcHHHHHHHHHHh---cCcccceeEeecCCc-cCCHHHHHHHHHH
Confidence 4445556544433 322 334678899999999999999877431 112235689884333 3456667777777
Q ss_pred HHhhhhhh------------hhhhHHHHHHHHHHHhc--CCceEEEEeCCC---ChhhHHHHHHHhCCCCCCCCCEEEEE
Q 048834 442 QVTRVKIA------------EELALNELESRLIRLFQ--SKRYLIVLDDVH---LPGAWYELQRIFSPNTSSSGSRVILL 504 (1108)
Q Consensus 442 ~l~~~~~~------------~~~~~~~l~~~l~~~l~--~k~~llvlDdv~---~~~~~~~l~~~~~~~~~~~~s~iivt 504 (1108)
.+...... ...+...+.+.+...+. .+++.+|+||.. ++.--..+...+. +.-++-.+++|
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~--~~P~~l~lvv~ 166 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK--HAPENLTLVVT 166 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH--hCCCCeEEEEE
Confidence 66632111 11233444444444443 458999999954 3332222332222 22278889999
Q ss_pred cCchHHHHh--cCCCcceEec----CCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHhh
Q 048834 505 TREAFVARA--FSPSIILLQL----RPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLLS 574 (1108)
Q Consensus 505 tr~~~v~~~--~~~~~~~~~~----~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l~ 574 (1108)
||...-... +...+...++ -.++.+|+.++|....+..-... -...+.+...|=+-|+..++-..+
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHcc
Confidence 997532110 1111112222 23677777777766543322222 233455566666666666665555
No 244
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.41 E-value=0.21 Score=56.28 Aligned_cols=154 Identities=12% Similarity=0.133 Sum_probs=81.8
Q ss_pred ceeeehHHHHHHHHHHhCC--C---------CceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCH
Q 048834 364 ELVGLKDQLLRLAQLTMSS--S---------SKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDL 432 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~--~---------~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~ 432 (1108)
++.|++..++++...+... . ..|..+.++|.+|+|||++|++++.. .... +.. .. .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~-----~~~--v~----~ 189 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIR--VV----G 189 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCC-----EEe--cc----h
Confidence 4578888888887766421 1 23677999999999999999999876 2222 222 11 0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCCh-------------hhHHHHHHHh---CCCCCC
Q 048834 433 RKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLP-------------GAWYELQRIF---SPNTSS 496 (1108)
Q Consensus 433 ~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~-------------~~~~~l~~~~---~~~~~~ 496 (1108)
..+..... + .....+...+...-...+.++++||++.. .....+...+ ......
T Consensus 190 ~~l~~~~~---g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 SELVRKYI---G-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred HHHHHHhh---h-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 11111100 0 00111111122222346789999998642 1112222222 100112
Q ss_pred CCCEEEEEcCchHHH-Hhc---CCCcceEecCCCChhhhHHHHhhhhc
Q 048834 497 SGSRVILLTREAFVA-RAF---SPSIILLQLRPLNVDESWELFLKKVG 540 (1108)
Q Consensus 497 ~~s~iivttr~~~v~-~~~---~~~~~~~~~~~L~~~~~~~lf~~~~~ 540 (1108)
.+..++.||...... ... +..+..+.+...+.++..++|.....
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~ 307 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTR 307 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHh
Confidence 355677777644322 111 11245678888888888888876543
No 245
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.41 E-value=0.062 Score=56.52 Aligned_cols=89 Identities=12% Similarity=0.144 Sum_probs=59.9
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCc------ceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQ------CRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTV 260 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~------~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~ 260 (1108)
..-+-|||-.|+||||+++....+.- ..++ .++.|.....++..++...|+.+++....... ....+...
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp--~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~--~~~~~~~~ 136 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHP--PQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRD--RVAKLEQQ 136 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCC--CCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCC--CHHHHHHH
Confidence 34489999999999999998885422 2232 35567778899999999999999987653222 23344444
Q ss_pred HHHHccCC-eEEEEEcCCCC
Q 048834 261 VHNYLIHK-RYLVILTDVRT 279 (1108)
Q Consensus 261 l~~~l~~k-r~LlVLDDVw~ 279 (1108)
..+.++.- -=+||+|.+-+
T Consensus 137 ~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 137 VLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHcCCcEEEeechHH
Confidence 45555432 23566777743
No 246
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.39 E-value=0.025 Score=59.03 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=21.6
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
....+.|+|..|+|||+||+++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999964
No 247
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.35 E-value=0.22 Score=56.58 Aligned_cols=197 Identities=11% Similarity=0.074 Sum_probs=93.0
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHH-
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILE- 441 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~- 441 (1108)
.+++|-+...+.+.+.+.. +..+-++.++|+.|+||||+|+.+.....-........|..- ...........+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~-~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~-~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM-GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQE-VTEPCGECESCRDFDAG 93 (397)
T ss_pred hhccChHHHHHHHHHHHHh-CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccccc-CCCCCCCCHHHHHHhcC
Confidence 3557877766666666654 345678889999999999999887654211110000000000 0000000000000000
Q ss_pred ------HHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEE-EcCchHHH
Q 048834 442 ------QVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVIL-LTREAFVA 511 (1108)
Q Consensus 442 ------~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iiv-ttr~~~v~ 511 (1108)
.+.+.......+..++...+. .-+.+++-++|+|++.. ...++.+...+. .....+.+++ +++...+.
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE--ep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE--EPPPHAIFIFATTELHKIP 171 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh--cCCCCeEEEEEeCChHHhH
Confidence 000000000011111111111 11234566889999875 346666666654 2223555554 44444444
Q ss_pred HhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 512 RAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 512 ~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
.........+++.+++.++....+...+.... ..--.+....++..++|-+.
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMR 223 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 43333446778888888887777665442211 11122334456667777553
No 248
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.051 Score=65.02 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
+++-++|+|++.. ....+.|...+......+.+|++|.
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 4555788999874 4557778776665555677776664
No 249
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.32 E-value=0.028 Score=60.45 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=23.1
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.-.+.++|||++|.|||.+|++|++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45677999999999999999999955
No 250
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.31 E-value=0.01 Score=60.01 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=19.2
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
||||.|.+|+||||+|+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~ 20 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLA 20 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999997
No 251
>PRK04296 thymidine kinase; Provisional
Probab=95.27 E-value=0.015 Score=58.38 Aligned_cols=114 Identities=11% Similarity=0.008 Sum_probs=58.5
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHK 268 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~k 268 (1108)
++-|+|..|.||||+|.... .+...+-..++++ . ..++.......++++++...........+.+...+++ ..++
T Consensus 4 i~litG~~GsGKTT~~l~~~--~~~~~~g~~v~i~-k-~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRA--YNYEERGMKVLVF-K-PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEECCCCCHHHHHHHHHH--HHHHHcCCeEEEE-e-ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 57789999999999987776 3333332222333 1 1112222223344444322111000112222233333 2345
Q ss_pred eEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecchhhh
Q 048834 269 RYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREADAA 309 (1108)
Q Consensus 269 r~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va 309 (1108)
.-+||+|.+-- .++...+...+ ...|-.||+|.++.+..
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~~ 119 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDFR 119 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcccc
Confidence 56899999853 33333333332 35688999999986543
No 252
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.26 E-value=0.08 Score=58.21 Aligned_cols=92 Identities=17% Similarity=0.129 Sum_probs=58.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhh-----hhHHHHHHHH
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEE-----LALNELESRL 461 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~-----~~~~~l~~~l 461 (1108)
..+.|+|.+|+||||+++.+++... ..+|+...|+.+......++.++++.+...+-....+.. .-........
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~-~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT-RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc-ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 4788999999999999999988732 226888889883333347888888888433222211111 1111222222
Q ss_pred HHH-hcCCceEEEEeCCCC
Q 048834 462 IRL-FQSKRYLIVLDDVHL 479 (1108)
Q Consensus 462 ~~~-l~~k~~llvlDdv~~ 479 (1108)
+++ -.++..++++|++..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 222 368999999999875
No 253
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.26 E-value=0.037 Score=69.18 Aligned_cols=38 Identities=8% Similarity=0.081 Sum_probs=31.3
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.+.+.++++|.....+- +-+||.+|+|||++|+.+..
T Consensus 185 ~~ei~~~~~~L~r~~~~n--~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 185 EKEIERVIQILGRRTKNN--PILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred HHHHHHHHHHHcccccCC--eEEECCCCCCHHHHHHHHHH
Confidence 788999999997654432 56999999999999998874
No 254
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.25 E-value=0.047 Score=61.85 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=20.9
Q ss_pred CceEeEEccCCCChhhHHHHhcCC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+-|-++|.+|.||||+|++|.+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 445789999999999999999964
No 255
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.52 Score=58.16 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=94.8
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-------------------eeEEEEe
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-------------------YHAWANV 424 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-------------------~~~w~~v 424 (1108)
+++|-+...+.+.+.+.. +..+-++.++|..|+|||++|+.+.....-..... ...++.+
T Consensus 16 eiiGqe~v~~~L~~~i~~-~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDS-GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HhcCcHHHHHHHHHHHHh-CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 457877777777777654 34456788999999999999988855421100000 0000010
Q ss_pred ccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH-HHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEE
Q 048834 425 DVSHDFDLRKVFINILEQVTRVKIAEELALNELESRL-IRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRV 501 (1108)
Q Consensus 425 ~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l-~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~i 501 (1108)
+......+++ ..++...+ ..-..++.-++|||+++. ...++.|...+. +.. ..+.+
T Consensus 95 daas~~~Vd~-------------------iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP-~~~~f 153 (824)
T PRK07764 95 DAASHGGVDD-------------------ARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPP-EHLKF 153 (824)
T ss_pred cccccCCHHH-------------------HHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCC-CCeEE
Confidence 0111111111 11111111 111235666888999875 555666666554 122 34444
Q ss_pred E-EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 502 I-LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 502 i-vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
| +|+....+...+......+++..+..++....+...+...... ........+++.++|-+
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdl 215 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSV 215 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCH
Confidence 4 4555555555556667889999999988877776654222211 11222334566667654
No 256
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.24 E-value=0.033 Score=62.19 Aligned_cols=89 Identities=13% Similarity=0.065 Sum_probs=52.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCH-HHHHHHHHHHhCCCch--------h--HHHHhhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDK-RELAINILNQFAPTDV--------E--LEEKLLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~-~~l~~~i~~~~~~~~~--------~--~~~~~~~~ 256 (1108)
..++|+|..|+|||||++.+.+. ...+..+++-+.+.... .++..+++..-..+.. + ..-...-.
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 45999999999999999999853 22357777777776543 4455555433111110 0 00000001
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ +++.||+++||+-..
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 112234444 589999999998754
No 257
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.24 E-value=0.16 Score=49.51 Aligned_cols=101 Identities=7% Similarity=0.040 Sum_probs=59.2
Q ss_pred ceEeEEccCCCChhhHHHHh----cCCcccc--------------cCCcceeEEEcCC---CCCHHHHHHHHHHHhCCCc
Q 048834 188 LHIPVVDVAGSAETPELWKI----YSCDDIK--------------NHFQCRAWFLVPP---RLDKRELAINILNQFAPTD 246 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v----~~~~~~~--------------~~F~~~~~~~~s~---~~~~~~l~~~i~~~~~~~~ 246 (1108)
..+-++|..|+||+|+|..+ +...... .......|+.-.. ...+.++. ++.+.+....
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~~ 98 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLSP 98 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS-
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHHH
Confidence 34789999999999987654 4332211 1122233333322 23344433 4444433221
Q ss_pred hhHHHHhhcchHHHHHHHccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 247 VELEEKLLESPQTVVHNYLIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 247 ~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
..+++=++|+||+.. .+...+|+..+..-...+++|++|.+.+
T Consensus 99 ------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 99 ------------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp ------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred ------------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 223455678899985 5668999888877778899998888765
No 258
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.23 E-value=0.077 Score=53.35 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=17.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
+||.+||+.|+||||.+-.+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 689999999999999655444
No 259
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.22 E-value=0.046 Score=56.66 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=35.5
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCC
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLD 230 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~ 230 (1108)
.+..+|..+=..-+++.|+|.+|+||||+|.++. .....+=...+|+.....+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a--~~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLA--VETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHH--HHHHhcCCeEEEEECCCCCH
Confidence 3444444343556789999999999999998877 33333334566777655543
No 260
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.22 E-value=0.16 Score=60.08 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=91.9
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc------e-----------eEEEEec
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE------Y-----------HAWANVD 425 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~------~-----------~~w~~v~ 425 (1108)
.+++|.+..++.+.+.+.. +..+..+.++|..|+|||++|+.+.....-..... + ..+..++
T Consensus 16 ddIIGQe~vv~~L~~ai~~-~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE-GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 3567888888888887765 34567889999999999999988755411110000 0 0000100
Q ss_pred cCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCCh--hhHHHHHHHhCCCCCCCCCEEE
Q 048834 426 VSHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHLP--GAWYELQRIFSPNTSSSGSRVI 502 (1108)
Q Consensus 426 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~~s~ii 502 (1108)
.+.....+ +...+..... .-..++.-++|+|++... ...+.+...+. ... ..+.+|
T Consensus 95 aAs~~gVd-------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp-~~v~fI 153 (709)
T PRK08691 95 AASNTGID-------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPP-EHVKFI 153 (709)
T ss_pred ccccCCHH-------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCC-CCcEEE
Confidence 11111111 1111111110 012356678999998763 33445555543 111 344555
Q ss_pred EEc-CchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 503 LLT-REAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 503 vtt-r~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
+++ ....+.....+....+.+..++.++....+...+..... .........|++.++|-+.
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~id~eAL~~Ia~~A~GslR 215 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AYEPPALQLLGRAAAGSMR 215 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHhCCCHH
Confidence 544 333333333334456777788888877777655432221 1112234456666666553
No 261
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.22 E-value=0.013 Score=47.52 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=19.0
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+|+|.|..|+||||+|+.+-+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998874
No 262
>PRK09087 hypothetical protein; Validated
Probab=95.21 E-value=0.54 Score=48.59 Aligned_cols=110 Identities=12% Similarity=0.163 Sum_probs=63.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQ 466 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 466 (1108)
..+.++|.+|+|||+|++.++... ...+++ ...+..++...+ .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~--------~~~~~~~~~~~~----------------------~ 87 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS-------DALLIH--------PNEIGSDAANAA----------------------A 87 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc-------CCEEec--------HHHcchHHHHhh----------------------h
Confidence 458999999999999999877541 112333 111111111111 1
Q ss_pred CCceEEEEeCCCC----hhhHHHHHHHhCCCCCCCCCEEEEEcCch---------HHHHhcCCCcceEecCCCChhhhHH
Q 048834 467 SKRYLIVLDDVHL----PGAWYELQRIFSPNTSSSGSRVILLTREA---------FVARAFSPSIILLQLRPLNVDESWE 533 (1108)
Q Consensus 467 ~k~~llvlDdv~~----~~~~~~l~~~~~~~~~~~~s~iivttr~~---------~v~~~~~~~~~~~~~~~L~~~~~~~ 533 (1108)
. -++++||+.. ...+..+..... ..|..+++|++.. .+...+ ....++++.+++.++...
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~----~~g~~ilits~~~p~~~~~~~~dL~SRl-~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR----QAGTSLLMTSRLWPSSWNVKLPDLKSRL-KAATVVEIGEPDDALLSQ 160 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH----hCCCeEEEECCCChHHhccccccHHHHH-hCCceeecCCCCHHHHHH
Confidence 1 2678899853 222222222222 2467788887632 222222 234688999999999999
Q ss_pred HHhhhhc
Q 048834 534 LFLKKVG 540 (1108)
Q Consensus 534 lf~~~~~ 540 (1108)
++.+.+.
T Consensus 161 iL~~~~~ 167 (226)
T PRK09087 161 VIFKLFA 167 (226)
T ss_pred HHHHHHH
Confidence 8887664
No 263
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.19 E-value=0.012 Score=55.09 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=18.5
Q ss_pred EeEEccCCCChhhHHHHhcC
Q 048834 190 IPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~ 209 (1108)
|+|.|..|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999984
No 264
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.18 E-value=0.03 Score=57.52 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=68.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcc-----cc------cCCc---ceeEEEc----CCCC--CH----------------
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDD-----IK------NHFQ---CRAWFLV----PPRL--DK---------------- 231 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~-----~~------~~F~---~~~~~~~----s~~~--~~---------------- 231 (1108)
.+++|+|+.|.|||||.|.+..--+ +. ..+. .+.||.- ...| .+
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 5799999999999999999986211 11 0111 2334421 0011 11
Q ss_pred ------HHHHHHHHHHhCCCch---hHHHHhhcchH-HHHHHHccCCeEEEEEcCCC------ChhhHhHhhhhCCCCCC
Q 048834 232 ------RELAINILNQFAPTDV---ELEEKLLESPQ-TVVHNYLIHKRYLVILTDVR------TPDIWEIIKFLFPNSLS 295 (1108)
Q Consensus 232 ------~~l~~~i~~~~~~~~~---~~~~~~~~~l~-~~l~~~l~~kr~LlVLDDVw------~~~~~~~l~~~~~~~~~ 295 (1108)
++...+.++.+..... ...+-+-.+.| ..|.+.|-.+.=|+|||.=- .....-.+...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 1334455555543321 11111112223 45788899999999999633 23334444444433 3
Q ss_pred CcEEEEEecchhhhhh
Q 048834 296 GSRVILSFREADAAMH 311 (1108)
Q Consensus 296 GSrIiiTTR~~~Va~~ 311 (1108)
|.-|+++|-|-+....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 8999999998766543
No 265
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.18 E-value=0.22 Score=58.32 Aligned_cols=185 Identities=15% Similarity=0.151 Sum_probs=96.0
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc--e---------------eEEEEec
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE--Y---------------HAWANVD 425 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~--~---------------~~w~~v~ 425 (1108)
.+++|.+...+.+.+.+... ..+.++.+.|+.|+|||++|+.+.....-..... . ..+..++
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieId 94 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELD 94 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEec
Confidence 35678888888888777553 4467889999999999999988855421000000 0 0000000
Q ss_pred cCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEE
Q 048834 426 VSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVI 502 (1108)
Q Consensus 426 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ii 502 (1108)
.+......+ ...+...+.. -+.+++-++++|+++. ...++.+...+. ... ....++
T Consensus 95 aas~igVd~-------------------IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp-~~tvfI 153 (605)
T PRK05896 95 AASNNGVDE-------------------IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPP-KHVVFI 153 (605)
T ss_pred cccccCHHH-------------------HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCC-CcEEEE
Confidence 111111111 1111111111 0123445799999865 455666666554 111 344444
Q ss_pred -EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch-hHHHHHH
Q 048834 503 -LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP-LAICVLG 570 (1108)
Q Consensus 503 -vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lal~~~~ 570 (1108)
+|+....+..........+++.+++.++....+...+..... .--......++..++|-+ .|+..+.
T Consensus 154 L~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 154 FATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred EECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 444444444444445567889999998887777664432210 011223445666677744 3443333
No 266
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.15 Score=60.10 Aligned_cols=38 Identities=8% Similarity=-0.034 Sum_probs=26.0
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-++.+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 20 ~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk 57 (584)
T PRK14952 20 HVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILAR 57 (584)
T ss_pred HHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 44455666665432 223467999999999999988763
No 267
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.18 Score=55.23 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..++|+|+|.+|+||||++..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHH
Confidence 45789999999999999988886
No 268
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.15 E-value=0.011 Score=35.25 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=6.3
Q ss_pred ccEEecCCcccccccc
Q 048834 786 LRYFGLRWTFLDSIPE 801 (1108)
Q Consensus 786 L~~L~l~~~~i~~lp~ 801 (1108)
|++||+++|.++.+|+
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3334444443333333
No 269
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.73 Score=53.05 Aligned_cols=176 Identities=18% Similarity=0.144 Sum_probs=96.3
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCc------cc--------------cccCceeEEEE
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSS------YI--------------RQNFEYHAWAN 423 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~------~~--------------~~~f~~~~w~~ 423 (1108)
+++|-+...+.+...+.. +..+.++-+.|..|+||||+|+.+.... .. ..+.+... ++
T Consensus 14 dliGQe~vv~~L~~a~~~-~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e-id 91 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTL-NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE-ID 91 (491)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE-Ee
Confidence 457877766666665544 4456789999999999999998875421 00 01111111 11
Q ss_pred eccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEE
Q 048834 424 VDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRV 501 (1108)
Q Consensus 424 v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~i 501 (1108)
.+.....++ .+++...... .-+.++.-++|+|+++. ....+.+...+. ...+.+.+
T Consensus 92 --aas~~~vdd-IR~Iie~~~~-----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE--ePp~~v~f 149 (491)
T PRK14964 92 --AASNTSVDD-IKVILENSCY-----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLE--EPAPHVKF 149 (491)
T ss_pred --cccCCCHHH-HHHHHHHHHh-----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHh--CCCCCeEE
Confidence 222222222 1222211110 01234667899999865 445666666554 11134544
Q ss_pred E-EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 502 I-LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 502 i-vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
+ .|+....+..........+++..++.++....+...+..... .--.+....+++.++|-+.
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 4 455555665555556678899999998888777665533221 1112233456666666543
No 270
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.14 E-value=0.035 Score=68.44 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=48.5
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC---CHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL---DKRELAINILNQFAPTDVELEEKLLESPQTVVHN 263 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~---~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 263 (1108)
..++-++|+.|+|||+||+.+.. .. +...+.+..|+-. .+.++. +........ +. ...+.+
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~--~l---~~~~~~~d~se~~~~~~~~~li-------g~~~gyvg~---~~-~~~l~~ 547 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAE--AL---GVHLERFDMSEYMEKHTVSRLI-------GAPPGYVGF---EQ-GGLLTE 547 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHH--Hh---cCCeEEEeCchhhhcccHHHHh-------cCCCCCccc---ch-hhHHHH
Confidence 44578999999999999999973 23 2233444444322 222221 111100000 00 122444
Q ss_pred HccCCe-EEEEEcCCCC--hhhHhHhhhhCCC
Q 048834 264 YLIHKR-YLVILTDVRT--PDIWEIIKFLFPN 292 (1108)
Q Consensus 264 ~l~~kr-~LlVLDDVw~--~~~~~~l~~~~~~ 292 (1108)
.++.+. -+|+||+|+. .+.++.|...+..
T Consensus 548 ~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 548 AVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred HHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 454444 4889999985 4556667666543
No 271
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.14 E-value=0.072 Score=58.41 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=71.5
Q ss_pred hhhhhhHHHhhhcC--CCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCch
Q 048834 170 NDEVKGLAELILSD--YPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDV 247 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~ 247 (1108)
+.+...+.+|...+ .+.-.-+=|.|-+|.|||.+...|+.+..-...=-+++++..-.--....+.+.|.+.+.....
T Consensus 156 e~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~ 235 (529)
T KOG2227|consen 156 ELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLV 235 (529)
T ss_pred HHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhc
Confidence 35555555555442 2334447789999999999999999653221111233555433333456677777777622211
Q ss_pred hHHHHhhcchHHHHHHHcc-CC-eEEEEEcCCCChh--hHhHhhhhCCCC-CCCcEEEEE
Q 048834 248 ELEEKLLESPQTVVHNYLI-HK-RYLVILTDVRTPD--IWEIIKFLFPNS-LSGSRVILS 302 (1108)
Q Consensus 248 ~~~~~~~~~l~~~l~~~l~-~k-r~LlVLDDVw~~~--~~~~l~~~~~~~-~~GSrIiiT 302 (1108)
..... .+ .+..+.+-.. .| -+++|||.++.-. .=+.|...|.|- -++||+|+.
T Consensus 236 s~~~~-~~-~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 236 SPGTG-MQ-HLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred CCchh-HH-HHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeee
Confidence 11110 22 2233333333 33 5899999998532 123344445554 477888765
No 272
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.036 Score=63.54 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=45.4
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC--CCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR--LDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
.-|-|.|..|+|||+||+++++... +.+.-...+|+.|.- -...++|+. +.....+++
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~-------------------l~~vfse~~ 491 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKF-------------------LNNVFSEAL 491 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHH-------------------HHHHHHHHH
Confidence 3488999999999999999995422 222223334544432 223333332 223345677
Q ss_pred cCCeEEEEEcCCC
Q 048834 266 IHKRYLVILTDVR 278 (1108)
Q Consensus 266 ~~kr~LlVLDDVw 278 (1108)
..-.-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 8889999999997
No 273
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.08 E-value=0.05 Score=67.62 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=30.5
Q ss_pred hhhhhHHHhhhc-CCCCCceEeEEccCCCChhhHHHHhcCCcccccC
Q 048834 171 DEVKGLAELILS-DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNH 216 (1108)
Q Consensus 171 ~~~~~~~~~l~~-~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~ 216 (1108)
.+.+.+...+.. ....-.|+.+.|..|||||+++++|. ..+...
T Consensus 7 ~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~--~~i~~~ 51 (849)
T COG3899 7 TELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVH--KPITQQ 51 (849)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHH--HHHhcc
Confidence 455555444433 23345589999999999999999998 445444
No 274
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.08 E-value=0.68 Score=46.55 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=53.4
Q ss_pred CCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCc-hHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcC
Q 048834 467 SKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTRE-AFVARAFSPSIILLQLRPLNVDESWELFLKKVGREK 543 (1108)
Q Consensus 467 ~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~-~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~ 543 (1108)
+.+-++|+|++.. ....+.+...+. . ....+.+++++.. ..+..........+.+.+++.++..+.+... + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le-~-~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLE-E-PPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhc-C-CCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C
Confidence 5567889999865 445666666654 2 2245555555543 3443444445578899999999888777665 1 1
Q ss_pred CchHHHHHHHHHHHHcCCch
Q 048834 544 RASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 544 ~~~~~~~~~~~i~~~~~glP 563 (1108)
. .+....++..++|.|
T Consensus 170 -~---~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 170 -S---EEAAELLLALAGGSP 185 (188)
T ss_pred -C---HHHHHHHHHHcCCCc
Confidence 1 233455666666655
No 275
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.12 Score=61.38 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEe
Q 048834 266 IHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSF 303 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTT 303 (1108)
.++| ++|+|++... ...+.|...+..-...+.+|++|
T Consensus 126 ~~~K-VvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 126 GRYR-VYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCE-EEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3444 5788998753 45778887776555566666555
No 276
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.06 E-value=0.05 Score=63.50 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=54.4
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCc--ceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQ--CRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~--~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
..+-|||..|+|||.|+++|.+. ....+. .++|++. .++..++...+.... ...+++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~~~-----------~~~f~~~y 375 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRDGK-----------GDSFRRRY 375 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHhcc-----------HHHHHHHh
Confidence 44899999999999999999964 443332 2234442 334444444432211 11233344
Q ss_pred cCCeEEEEEcCCCCh---hhHh-HhhhhCCC-CCCCcEEEEEecc
Q 048834 266 IHKRYLVILTDVRTP---DIWE-IIKFLFPN-SLSGSRVILSFRE 305 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~---~~~~-~l~~~~~~-~~~GSrIiiTTR~ 305 (1108)
++- =+|||||+... +.|+ .|...+.. ...|..|||||+.
T Consensus 376 ~~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 376 REM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred hcC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 433 47888999742 3342 22222221 1346678888874
No 277
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.06 E-value=0.051 Score=53.52 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 46999999999999999999753
No 278
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.06 E-value=0.59 Score=55.66 Aligned_cols=191 Identities=10% Similarity=0.093 Sum_probs=92.9
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHH-
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILE- 441 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~- 441 (1108)
.+++|-+.....+.+.+.. +..+-++.++|..|+||||+|+.+.....-....+...|..- +..........+.+..
T Consensus 16 ~eivGQe~i~~~L~~~i~~-~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~-~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM-DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE-VTEPCGECESCRDFDAG 93 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc-cCCCCccCHHHHHHhcc
Confidence 3457877777777666643 455678999999999999999887554211110000011100 0000000000000000
Q ss_pred ------HHhhhhhhhhhhHHHHHHHHHH----HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEE-EEEcCch
Q 048834 442 ------QVTRVKIAEELALNELESRLIR----LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRV-ILLTREA 508 (1108)
Q Consensus 442 ------~l~~~~~~~~~~~~~l~~~l~~----~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~i-ivttr~~ 508 (1108)
.+.+. .....+++...... -+.+.+-++|+|+++. ....+.+...+. ... ..+.+ +++++..
T Consensus 94 ~~~n~~~~d~~---s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp-~~tv~IL~t~~~~ 168 (620)
T PRK14954 94 TSLNISEFDAA---SNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPP-PHAIFIFATTELH 168 (620)
T ss_pred CCCCeEEeccc---ccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCC-CCeEEEEEeCChh
Confidence 00000 00111222211111 1334566789999865 344566666554 111 33444 4455555
Q ss_pred HHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCC
Q 048834 509 FVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGG 561 (1108)
Q Consensus 509 ~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 561 (1108)
.+..........+++..++.++....+...+.... -.-..+....++..++|
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~G 220 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQG 220 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCC
Confidence 55555555667899999999887777665442211 01112233445666666
No 279
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.04 E-value=0.25 Score=61.44 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=21.5
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.-.++.++|++|+||||+|+.+.+.
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999843
No 280
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.04 E-value=0.053 Score=61.40 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=54.7
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------h--HHHHhhcchH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------E--LEEKLLESPQ 258 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~--~~~~~~~~l~ 258 (1108)
++|.|..|+|||||+..+.+... +.+-+.++|+-+.+.. .+.++..++...=..+.. + ..-...-...
T Consensus 146 ~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a 224 (461)
T PRK12597 146 TGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTG 224 (461)
T ss_pred EEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHH
Confidence 99999999999999987774322 2356788888887765 455566666543111110 0 0000001122
Q ss_pred HHHHHHc---cCCeEEEEEcCCCCh
Q 048834 259 TVVHNYL---IHKRYLVILTDVRTP 280 (1108)
Q Consensus 259 ~~l~~~l---~~kr~LlVLDDVw~~ 280 (1108)
..+.+++ .+|.|||++||+-..
T Consensus 225 ~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 225 LTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHhcCCceEEEeccchHH
Confidence 3345555 389999999999653
No 281
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.49 Score=56.17 Aligned_cols=191 Identities=15% Similarity=0.157 Sum_probs=92.8
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccccc--CceeEEEEeccCCCcCHHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQN--FEYHAWANVDVSHDFDLRKVFINILE 441 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~--f~~~~w~~v~~s~~~~~~~l~~~il~ 441 (1108)
+++|-+..++.+.+.+.. +..+-++.++|..|+||||+|+.+.....-... ..+... ...........+..
T Consensus 17 dviGQe~vv~~L~~~l~~-~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~------~pCg~C~~C~~i~~ 89 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQ-QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA------TPCGVCQACRDIDS 89 (618)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC------CCCCccHHHHHHHc
Confidence 457866666666666554 445678899999999999999888433100000 000000 00000000000000
Q ss_pred ----HHhhhhhhhhhhHHHHHHHHHH----HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEE-EEcCchHH
Q 048834 442 ----QVTRVKIAEELALNELESRLIR----LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVI-LLTREAFV 510 (1108)
Q Consensus 442 ----~l~~~~~~~~~~~~~l~~~l~~----~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ii-vttr~~~v 510 (1108)
++...........+++...+.. -..++.-++++|+++. ...++.+...+. ... ....+| +|+....+
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP-~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPP-EYLKFVLATTDPQKV 167 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCC-CCeEEEEEECCchhh
Confidence 0000000000111111111111 1124556889999876 455666666554 111 334444 45554555
Q ss_pred HHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 511 ARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 511 ~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
..........+++..++.++....+...+....... .......+++.++|-+.
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR 220 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMR 220 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 544555567899999999988887766543222111 12233445566666443
No 282
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.03 E-value=0.037 Score=62.92 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=49.8
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeE-EEcCCCCC-HHHHHHHHHHHh---CCCchhHHHHhhcchHHHHHHH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAW-FLVPPRLD-KRELAINILNQF---APTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~-~~~s~~~~-~~~l~~~i~~~~---~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
.+|+|.+|+|||||++.|.|. ....+=++.++ +-|.+... +..+.+.+-.++ +...........-.+...+.++
T Consensus 419 ~LIvgpp~aGKTtLL~~IAn~-i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~ 497 (672)
T PRK12678 419 GLIVSPPKAGKTTILQNIANA-ITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKR 497 (672)
T ss_pred eEEeCCCCCCHHHHHHHHHHH-HhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999863 12234455544 44555543 333433331111 1111111111122233334455
Q ss_pred c--cCCeEEEEEcCCCCh
Q 048834 265 L--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 265 l--~~kr~LlVLDDVw~~ 280 (1108)
+ .++.|||++|++-..
T Consensus 498 fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 498 LVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHcCCCEEEEEeCchHH
Confidence 5 689999999998653
No 283
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.02 E-value=0.077 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=20.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 45999999999999999999864
No 284
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.02 E-value=0.16 Score=59.72 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.0
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+-+-++|++|.||||||+++.+.
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 34788999999999999999854
No 285
>PRK08727 hypothetical protein; Validated
Probab=95.02 E-value=0.51 Score=49.23 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=64.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQ 466 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 466 (1108)
..+.++|.+|+|||.++.++++.. .+......++. . .+....+. ..+ +.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~--~------~~~~~~~~------------------~~~-~~l- 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLP--L------QAAAGRLR------------------DAL-EAL- 91 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEe--H------HHhhhhHH------------------HHH-HHH-
Confidence 459999999999999999987652 22222334444 1 11111100 011 111
Q ss_pred CCceEEEEeCCCCh---hhHH-HHHHHhCCCCCCCCCEEEEEcCchH---------HHHhcCCCcceEecCCCChhhhHH
Q 048834 467 SKRYLIVLDDVHLP---GAWY-ELQRIFSPNTSSSGSRVILLTREAF---------VARAFSPSIILLQLRPLNVDESWE 533 (1108)
Q Consensus 467 ~k~~llvlDdv~~~---~~~~-~l~~~~~~~~~~~~s~iivttr~~~---------v~~~~~~~~~~~~~~~L~~~~~~~ 533 (1108)
.+.-++++||+... ..|. .+...+... ...+..+++|++... +..... ...++.+.+++.++...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~-~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~-~~~~~~l~~~~~e~~~~ 169 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRA-RAAGITLLYTARQMPDGLALVLPDLRSRLA-QCIRIGLPVLDDVARAA 169 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHH-HHcCCeEEEECCCChhhhhhhhHHHHHHHh-cCceEEecCCCHHHHHH
Confidence 23348999998642 2232 222222211 124566888877422 111111 13577888888888888
Q ss_pred HHhhhh
Q 048834 534 LFLKKV 539 (1108)
Q Consensus 534 lf~~~~ 539 (1108)
++.+.+
T Consensus 170 iL~~~a 175 (233)
T PRK08727 170 VLRERA 175 (233)
T ss_pred HHHHHH
Confidence 887644
No 286
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.01 E-value=0.14 Score=58.26 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=18.8
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-++|.++|++|+||||++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999877665
No 287
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.01 E-value=0.0092 Score=35.52 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=17.0
Q ss_pred CCcEEeccCCcCccCChhhccc
Q 048834 808 CLETLDLKHTNITSLPKSIWKV 829 (1108)
Q Consensus 808 ~L~~L~L~~~~l~~lp~~i~~l 829 (1108)
+|++|+|++|+++.+|+++++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5788999998888888876653
No 288
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.00 E-value=0.97 Score=50.51 Aligned_cols=193 Identities=22% Similarity=0.198 Sum_probs=90.4
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-eeEEEEeccCCCcCH-HHHH-H--
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-YHAWANVDVSHDFDL-RKVF-I-- 437 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-~~~w~~v~~s~~~~~-~~l~-~-- 437 (1108)
.+++|.+...+.+...+... .+..+.++|..|+|||++|+.+.+... ...+. ....++ .+...+. .... .
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~--~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFN--VADFFDQGKKYLVEDP 89 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEec--hhhhhhcchhhhhcCc
Confidence 34578888888887777543 223567999999999999998866521 01111 111212 2111000 0000 0
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHH---h--cCCceEEEEeCCCCh--hhHHHHHHHhCCCCCCCCCEEEEEcCc-hH
Q 048834 438 NILEQVTRVKIAEELALNELESRLIRL---F--QSKRYLIVLDDVHLP--GAWYELQRIFSPNTSSSGSRVILLTRE-AF 509 (1108)
Q Consensus 438 ~il~~l~~~~~~~~~~~~~l~~~l~~~---l--~~k~~llvlDdv~~~--~~~~~l~~~~~~~~~~~~s~iivttr~-~~ 509 (1108)
.....+...........+.+...++.. . ....-++++||+... .....+...+. .....+++++++.. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le--~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME--QYSRTCRFIIATRQPSK 167 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH--hccCCCeEEEEeCChhh
Confidence 000000000000000111111111111 1 134458999998652 33444544433 11244666666543 33
Q ss_pred HHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 510 VARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 510 v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
+..........+.+.+++.++....+...+...... --.+....++..++|-+
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDL 220 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCH
Confidence 333333445677888888888877776654322211 11223344555666544
No 289
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.98 E-value=0.026 Score=58.85 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=27.2
Q ss_pred hhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 173 VKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 173 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+.+..+.. ......+|||.|..|.|||||++.+.+
T Consensus 20 ~~~~~~~~~-~~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 20 LRRLAALQA-EPQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred HHHHHHHHh-cCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 333444443 445678999999999999999999883
No 290
>PRK08149 ATP synthase SpaL; Validated
Probab=94.95 E-value=0.083 Score=59.24 Aligned_cols=89 Identities=12% Similarity=0.075 Sum_probs=51.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC-CCHHHHHHHHHHHhCCCch--------hHHHH--hhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR-LDKRELAINILNQFAPTDV--------ELEEK--LLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~-~~~~~l~~~i~~~~~~~~~--------~~~~~--~~~~ 256 (1108)
..++|+|..|+|||||++.+.+.. .-+..++..+... .++..+..+.+........ +.... ....
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 349999999999999999998642 2244555556544 3555666666554221111 00000 0011
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .+|.|||++||+-..
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112233333 589999999998753
No 291
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.95 E-value=0.017 Score=59.35 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+|+|+|..|+||||||+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999999999984
No 292
>PRK08356 hypothetical protein; Provisional
Probab=94.91 E-value=0.14 Score=51.82 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=18.7
Q ss_pred ceEeEEccCCCChhhHHHHh
Q 048834 188 LHIPVVDVAGSAETPELWKI 207 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v 207 (1108)
.+|+|+|+.|+||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999998
No 293
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.89 E-value=0.041 Score=55.52 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=51.4
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc-
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL- 265 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l- 265 (1108)
-+++.|.|.+|.||||+++.+.+ ..... ...+.+.-...-....+. +..... ...+...+...-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~--~~~~~-g~~v~~~apT~~Aa~~L~----~~~~~~--------a~Ti~~~l~~~~~ 82 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAE--ALEAA-GKRVIGLAPTNKAAKELR----EKTGIE--------AQTIHSFLYRIPN 82 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHH--HHHHT-T--EEEEESSHHHHHHHH----HHHTS---------EEEHHHHTTEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHH--HHHhC-CCeEEEECCcHHHHHHHH----HhhCcc--------hhhHHHHHhcCCc
Confidence 35688899999999999998873 23332 223333322222222222 222211 112222222111
Q ss_pred --------cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 266 --------IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 266 --------~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
..++-+||+|+..- ..++..+...... .|+|+|..=-
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD 129 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGD 129 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 12345889999985 4567777776643 5789887643
No 294
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.88 E-value=0.017 Score=59.14 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+|+|+|..|+||||||+.+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999984
No 295
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.88 E-value=0.6 Score=48.73 Aligned_cols=121 Identities=14% Similarity=0.220 Sum_probs=63.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQ 466 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~ 466 (1108)
..+.++|+.|+|||++++.+++.. ...-....+.. .. ... ....++...+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~--~~----------~~~-----------~~~~~~~~~~~---- 96 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVP--LD----------KRA-----------WFVPEVLEGME---- 96 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEE--HH----------HHh-----------hhhHHHHHHhh----
Confidence 478899999999999999887652 21122334444 11 000 00011111111
Q ss_pred CCceEEEEeCCCC---hhhHHH-HHHHhCCCCCCCC-CEEEEEcCchH---------HHHhcCCCcceEecCCCChhhhH
Q 048834 467 SKRYLIVLDDVHL---PGAWYE-LQRIFSPNTSSSG-SRVILLTREAF---------VARAFSPSIILLQLRPLNVDESW 532 (1108)
Q Consensus 467 ~k~~llvlDdv~~---~~~~~~-l~~~~~~~~~~~~-s~iivttr~~~---------v~~~~~~~~~~~~~~~L~~~~~~ 532 (1108)
+.-++++||+.. ...|+. +...+..... .| ..+++|++... +...+. ...++++.+++.++..
T Consensus 97 -~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~-~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 97 -QLSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLD-WGQIYKLQPLSDEEKL 173 (235)
T ss_pred -hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHh-CCceeeecCCCHHHHH
Confidence 123788999864 234432 2222221111 23 46888877442 111111 2357788888888877
Q ss_pred HHHhhhh
Q 048834 533 ELFLKKV 539 (1108)
Q Consensus 533 ~lf~~~~ 539 (1108)
+.+.+.+
T Consensus 174 ~~l~~~a 180 (235)
T PRK08084 174 QALQLRA 180 (235)
T ss_pred HHHHHHH
Confidence 7776543
No 296
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0012 Score=66.46 Aligned_cols=102 Identities=21% Similarity=0.201 Sum_probs=69.2
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCCh--hhccccccCEEEe
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPK--SIWKVKTLRHLYM 837 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L~~L~l 837 (1108)
+.+.+.|++.||.+.++ +...+++.|++|.|+-|.|.+|.+ +..+++|+.|.|..|.|..+-+ .+.++++|++|-+
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 34478888888887766 445678889999998888887743 6678888888888886665533 3667788888877
Q ss_pred ccccccccccC---CccccCccccccccc
Q 048834 838 NDIYLQMSVQK---PFVKYSLTNLQTLWS 863 (1108)
Q Consensus 838 ~~~~~~~~~~~---~~~l~~l~~L~~L~~ 863 (1108)
..|.+.+.... ...+.-|++|+.|+.
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccC
Confidence 76655433211 112445666666643
No 297
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.84 E-value=0.19 Score=53.19 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=62.8
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEE---EcCCCCCHHHHHHHHHHHhCCCchh--HHH-HhhcchHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWF---LVPPRLDKRELAINILNQFAPTDVE--LEE-KLLESPQT 259 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~---~~s~~~~~~~l~~~i~~~~~~~~~~--~~~-~~~~~l~~ 259 (1108)
+..-++|+|..|.|||||.+.+... +... ...+++ .|.......++...+ ..+...... .+. ..... ..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~--~~~~-~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k-~~ 184 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARI--LSTG-ISQLGLRGKKVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPK-AE 184 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCc--cCCC-CceEEECCEEeecchhHHHHHHHh-cccccccccccccccccchH-HH
Confidence 3567999999999999999999843 3322 222222 111111112222111 111100000 000 00001 11
Q ss_pred HHHHHcc-CCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhh
Q 048834 260 VVHNYLI-HKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAM 310 (1108)
Q Consensus 260 ~l~~~l~-~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~ 310 (1108)
-+...+. ...=++++|.+-..+.+.++...+. .|..||+||.+.++..
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1222232 4677889999998887877776653 5788999999877754
No 298
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.81 E-value=0.033 Score=58.92 Aligned_cols=112 Identities=18% Similarity=0.135 Sum_probs=47.9
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHK 268 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~k 268 (1108)
.|-|+|.+|+||||+|+.+... ... ...-++.++.. .+. +-.... .....+......+.+.+.+.|. +
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~--~~~--~~~~v~~i~~~----~~~--~~~~~y-~~~~~Ek~~R~~l~s~v~r~ls-~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKY--LEE--KGKEVVIISDD----SLG--IDRNDY-ADSKKEKEARGSLKSAVERALS-K 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH--HHH--TT--EEEE-TH----HHH---TTSSS---GGGHHHHHHHHHHHHHHHHT-T
T ss_pred EEEEEcCCCCcHHHHHHHHHHH--HHh--cCCEEEEEccc----ccc--cchhhh-hchhhhHHHHHHHHHHHHHhhc-c
Confidence 4889999999999999999732 222 11223333311 111 101110 0111122223445556666664 4
Q ss_pred eEEEEEcCCCChhh--HhHhhhhCCCCCCCcEEEEEecchhhhhhcc
Q 048834 269 RYLVILTDVRTPDI--WEIIKFLFPNSLSGSRVILSFREADAAMHRN 313 (1108)
Q Consensus 269 r~LlVLDDVw~~~~--~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~ 313 (1108)
..+||+||..--.- .+..+..- ..+.+.-+|-.--..+.|...+
T Consensus 71 ~~iVI~Dd~nYiKg~RYelyclAr-~~~~~~c~i~~~~~~e~~~~~N 116 (270)
T PF08433_consen 71 DTIVILDDNNYIKGMRYELYCLAR-AYGTTFCVIYCDCPLETCLQRN 116 (270)
T ss_dssp -SEEEE-S---SHHHHHHHHHHHH-HTT-EEEEEEEE--HHHHHHHH
T ss_pred CeEEEEeCCchHHHHHHHHHHHHH-HcCCCEEEEEECCCHHHHHHhh
Confidence 57888999975332 22222221 2344455555555555555443
No 299
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.81 E-value=0.14 Score=56.19 Aligned_cols=63 Identities=6% Similarity=-0.002 Sum_probs=41.2
Q ss_pred hhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCC----cceeEEEcCCCCCHHHHHHHHHHHh
Q 048834 179 LILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF----QCRAWFLVPPRLDKRELAINILNQF 242 (1108)
Q Consensus 179 ~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F----~~~~~~~~s~~~~~~~l~~~i~~~~ 242 (1108)
+|..+=+.-+++-|+|.+|+||||+|..+.-.......+ ...+|++....|+..++.+ +++.+
T Consensus 94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 333333456779999999999999997775211111111 3678999988888887654 34443
No 300
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.81 E-value=0.015 Score=59.20 Aligned_cols=28 Identities=14% Similarity=-0.011 Sum_probs=24.2
Q ss_pred CCCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 183 DYPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 183 ~~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
....+-.|-++|++|.||||||..|-|.
T Consensus 48 r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 48 RGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred cCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 3556777999999999999999999965
No 301
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.81 E-value=0.098 Score=58.78 Aligned_cols=89 Identities=11% Similarity=0.126 Sum_probs=50.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHhhc--c
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKLLE--S 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~~~--~ 256 (1108)
..++|+|..|+|||||++.+.+.. +.+..+++.+.+.. .+.+...+....=..+.. +....... .
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 459999999999999999998642 34556666666554 333545444321000000 00000000 0
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ ++|+|||++||+-..
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCHHHH
Confidence 112234444 588999999999753
No 302
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=94.80 E-value=0.53 Score=56.59 Aligned_cols=44 Identities=27% Similarity=0.258 Sum_probs=34.7
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+..+..+.+.+.. ..+..+.++|.+|+||||+|+.+++.
T Consensus 155 ~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~ 198 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEE 198 (615)
T ss_pred hceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 357888888887777653 33557889999999999999998765
No 303
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.77 E-value=0.15 Score=50.91 Aligned_cols=119 Identities=12% Similarity=0.120 Sum_probs=62.2
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEE---cCCCCCHHHHHH------HHHHHhCCCch-hHHHHhhcc-
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFL---VPPRLDKRELAI------NILNQFAPTDV-ELEEKLLES- 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~---~s~~~~~~~l~~------~i~~~~~~~~~-~~~~~~~~~- 256 (1108)
.+++|+|..|.|||||++.+..-. ......+++. +. ..+...... ++++.+..... ......+..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 459999999999999999998642 2234444432 22 122222211 13444432211 000001111
Q ss_pred --hHHHHHHHccCCeEEEEEcCCCCh---hhHhHhhhhCCCC-CC-CcEEEEEecchhhhh
Q 048834 257 --PQTVVHNYLIHKRYLVILTDVRTP---DIWEIIKFLFPNS-LS-GSRVILSFREADAAM 310 (1108)
Q Consensus 257 --l~~~l~~~l~~kr~LlVLDDVw~~---~~~~~l~~~~~~~-~~-GSrIiiTTR~~~Va~ 310 (1108)
-.-.+.+.+-...=+++||+--.. ...+.+...+... .+ |.-||++|.+.+.+.
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 122355666667778889988642 2233333333211 22 678888888876553
No 304
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.77 E-value=0.63 Score=48.47 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=28.0
Q ss_pred eehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 367 GLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 367 g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
|.........+.+.........+.++|..|+|||++|+.+++.
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3333333333333332233457889999999999999998775
No 305
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.75 E-value=0.95 Score=53.44 Aligned_cols=186 Identities=14% Similarity=0.146 Sum_probs=94.8
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCce-----------------eEEEEecc
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY-----------------HAWANVDV 426 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~-----------------~~w~~v~~ 426 (1108)
+++|-+...+.+.+.+.. +..+.++...|..|+|||++|+.+.....-...... ..+..++.
T Consensus 17 dIiGQe~v~~~L~~ai~~-~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~ 95 (624)
T PRK14959 17 EVAGQETVKAILSRAAQE-NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG 95 (624)
T ss_pred HhcCCHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec
Confidence 446766665666665544 344668889999999999999888665211100000 00111001
Q ss_pred CCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEE
Q 048834 427 SHDFDLRKVFINILEQVTRVKIAEELALNELESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVIL 503 (1108)
Q Consensus 427 s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iiv 503 (1108)
+....++ ....+...+. .-..++..++|+|+++. ....+.+...+. ... ....+|+
T Consensus 96 a~~~~Id-------------------~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~-~~~ifIL 154 (624)
T PRK14959 96 ASNRGID-------------------DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPP-ARVTFVL 154 (624)
T ss_pred ccccCHH-------------------HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccC-CCEEEEE
Confidence 1111111 1111111111 11235667899999875 345566665553 111 3444554
Q ss_pred -EcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCC-chhHHHHHHHH
Q 048834 504 -LTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGG-LPLAICVLGGL 572 (1108)
Q Consensus 504 -ttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlal~~~~~~ 572 (1108)
|+....+..........+++..++.++....+...+..... ....+....++...+| +-.++..+...
T Consensus 155 aTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 155 ATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred ecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444444444567889999999888777654432210 1112233445556666 34555555443
No 306
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.75 E-value=0.11 Score=58.59 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=52.1
Q ss_pred EeEEccCCCChhhHH-HHhcCCcccc-----cCCcceeEEEcCCCCCHHHHHHHHHHHhC-CCch-----hHHHHh-hcc
Q 048834 190 IPVVDVAGSAETPEL-WKIYSCDDIK-----NHFQCRAWFLVPPRLDKRELAINILNQFA-PTDV-----ELEEKL-LES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla-~~v~~~~~~~-----~~F~~~~~~~~s~~~~~~~l~~~i~~~~~-~~~~-----~~~~~~-~~~ 256 (1108)
++|.|-.|+|||||| ..|.|...+. ++-+.++|+-+.+......=..+.+++-. .+.. ..++.. ..-
T Consensus 192 ~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~ 271 (574)
T PTZ00185 192 ELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQY 271 (574)
T ss_pred EEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHH
Confidence 899999999999997 6666654321 34456789989887644332333333322 1110 000000 000
Q ss_pred ----hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 ----PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 ----l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ ++|.+|+|+||+...
T Consensus 272 ~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 272 LAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 112233333 589999999999864
No 307
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.75 E-value=0.091 Score=54.88 Aligned_cols=92 Identities=18% Similarity=0.128 Sum_probs=55.5
Q ss_pred EeEEccCCCChhhHHHHhcCCccc--ccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHh--hcc
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDI--KNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKL--LES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~--~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~--~~~ 256 (1108)
++|.|-.|+|||||+..+-++..+ +.+-+.++|+-+.+.. .+.++..++.+.=..+.. +..... .-.
T Consensus 72 ~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~ 151 (276)
T cd01135 72 IPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPR 151 (276)
T ss_pred EEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHH
Confidence 899999999999999888755321 1234778899888775 556666666554111110 000000 001
Q ss_pred hHHHHHHHc---cCCeEEEEEcCCCChh
Q 048834 257 PQTVVHNYL---IHKRYLVILTDVRTPD 281 (1108)
Q Consensus 257 l~~~l~~~l---~~kr~LlVLDDVw~~~ 281 (1108)
....+.+++ .+|.+|+|+||+...-
T Consensus 152 ~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 152 MALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 112344554 3789999999987643
No 308
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.73 E-value=0.093 Score=58.95 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=52.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCC-HHHHHHHHHHHhCCCch--------h--HHHHhhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLD-KRELAINILNQFAPTDV--------E--LEEKLLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~-~~~l~~~i~~~~~~~~~--------~--~~~~~~~~ 256 (1108)
..++|+|..|+|||||++.+.+.. .-+..+++-+.+... +.++..+.+.+-..+.. + ..-...-.
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 458999999999999999998542 235667777776654 33555444443211110 0 00000011
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .+|.|||++||+-..
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 112244444 589999999999653
No 309
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.72 E-value=0.14 Score=55.53 Aligned_cols=69 Identities=10% Similarity=0.035 Sum_probs=45.5
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccccc----CCcceeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKN----HFQCRAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~----~F~~~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
..+..+|..+=+.-+|+-|+|.+|+|||||+..+.-...... .=...+|++.-..|+..++.+ +++.+.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 344445554445567899999999999999976541111111 113578999988899988764 455554
No 310
>PRK08233 hypothetical protein; Provisional
Probab=94.70 E-value=0.019 Score=57.57 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.7
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999999983
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.70 E-value=0.086 Score=52.85 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=18.6
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
||.|+|++|+||||+|+.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la 20 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIV 20 (183)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999987
No 312
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.69 E-value=0.096 Score=50.29 Aligned_cols=55 Identities=9% Similarity=0.280 Sum_probs=39.4
Q ss_pred HHHHHHccCCeEEEEEcC----CCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhcc
Q 048834 259 TVVHNYLIHKRYLVILTD----VRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRN 313 (1108)
Q Consensus 259 ~~l~~~l~~kr~LlVLDD----Vw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~ 313 (1108)
..+.+.+-++.-+|+-|. ++..-.|+-+.---.-...|.-|++.|.|.++-..+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 346777888888888885 3445557665543334568999999999999887663
No 313
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.69 E-value=1.2 Score=51.32 Aligned_cols=144 Identities=20% Similarity=0.282 Sum_probs=74.9
Q ss_pred HHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccC-c-eeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhh
Q 048834 375 LAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNF-E-YHAWANVDVSHDFDLRKVFINILEQVTRVKIAEEL 452 (1108)
Q Consensus 375 i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f-~-~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~ 452 (1108)
.+..+.+..+....+.++|..|+|||.|++++.+. +.... . ...+++ ..++..++...+...
T Consensus 119 ~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~--------~~~f~~~~~~~~~~~------ 182 (440)
T PRK14088 119 AALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT--------SEKFLNDLVDSMKEG------ 182 (440)
T ss_pred HHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE--------HHHHHHHHHHHHhcc------
Confidence 33444444443445899999999999999999886 33322 2 234444 233344444433211
Q ss_pred hHHHHHHHHHHHhcCCceEEEEeCCCCh---hhH-HHHHHHhCCCCCCCCCEEEEEcC-chHHHHh----cC---CCcce
Q 048834 453 ALNELESRLIRLFQSKRYLIVLDDVHLP---GAW-YELQRIFSPNTSSSGSRVILLTR-EAFVARA----FS---PSIIL 520 (1108)
Q Consensus 453 ~~~~l~~~l~~~l~~k~~llvlDdv~~~---~~~-~~l~~~~~~~~~~~~s~iivttr-~~~v~~~----~~---~~~~~ 520 (1108)
+... +++.+..+.-++++||+... ..+ +.+...+.... ..+..+++++. ...-... .. ....+
T Consensus 183 ~~~~----f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~-~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~ 257 (440)
T PRK14088 183 KLNE----FREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLV 257 (440)
T ss_pred cHHH----HHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH-HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCce
Confidence 1111 22223334568999998742 111 12222221101 13456777764 3222111 11 12246
Q ss_pred EecCCCChhhhHHHHhhhh
Q 048834 521 LQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 521 ~~~~~L~~~~~~~lf~~~~ 539 (1108)
..+.+.+.+....++.+.+
T Consensus 258 v~i~~pd~e~r~~IL~~~~ 276 (440)
T PRK14088 258 AKLEPPDEETRKKIARKML 276 (440)
T ss_pred EeeCCCCHHHHHHHHHHHH
Confidence 6788888888777776654
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.68 E-value=0.15 Score=52.99 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=30.9
Q ss_pred CCCceEeEEccCCCChhhHH-HHhcCCcccccCCcceeEEEcCCCCCHHHHHHHH
Q 048834 185 PSPLHIPVVDVAGSAETPEL-WKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINI 238 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla-~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i 238 (1108)
+.-.++.|.|..|.||||+| +.+++- .+.. ...+|++. ..+..++.+.+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g-~~~~yi~~--e~~~~~~~~~~ 71 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGF--LQNG-YSVSYVST--QLTTTEFIKQM 71 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--HhCC-CcEEEEeC--CCCHHHHHHHH
Confidence 44568999999999999997 555531 2222 33456663 33445666655
No 315
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=1.6 Score=51.76 Aligned_cols=185 Identities=17% Similarity=0.150 Sum_probs=98.7
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-------------------eeEEEEe
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-------------------YHAWANV 424 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-------------------~~~w~~v 424 (1108)
+++|-+...+.+...+.. +..+-++.+.|..|+||||+|+.+.....-....+ ....+.+
T Consensus 14 eivGq~~i~~~L~~~i~~-~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDA-GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 457877777777777754 34566788999999999999988865421100000 0001111
Q ss_pred ccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCE-
Q 048834 425 DVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSR- 500 (1108)
Q Consensus 425 ~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~- 500 (1108)
+.+....++ ...++...+.. -..++.-++|+|+++. ....+.+...+. ... ....
T Consensus 93 daas~~gvd-------------------~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp-~~~~f 151 (584)
T PRK14952 93 DAASHGGVD-------------------DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPP-EHLIF 151 (584)
T ss_pred ccccccCHH-------------------HHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCC-CCeEE
Confidence 111111111 11112211111 1234566889999865 556666666554 222 3444
Q ss_pred EEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch-hHHHHHHH
Q 048834 501 VILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP-LAICVLGG 571 (1108)
Q Consensus 501 iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-lal~~~~~ 571 (1108)
|++|+....+..........+++..++.++..+.+...+...... ........++...+|-+ .++..+-.
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 445555555555555556789999999988877776544322211 11223344566666644 34444433
No 316
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.65 E-value=0.072 Score=52.72 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 35999999999999999999853
No 317
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.64 E-value=0.11 Score=53.45 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=72.0
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEc---CC--CCCHHHHHHHHHHHhCCCchhHH----HHhhcchH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLV---PP--RLDKRELAINILNQFAPTDVELE----EKLLESPQ 258 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~---s~--~~~~~~l~~~i~~~~~~~~~~~~----~~~~~~l~ 258 (1108)
.++||||-.|+||||+|+.+.. .-+--...++..- .. .....+-..++++.++....... +-+-.+.|
T Consensus 40 e~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4599999999999999999973 2222222333321 11 22334456677777765442111 11123344
Q ss_pred H-HHHHHccCCeEEEEEcCCCC------hhhHhHhhhhCCCCCCCcEEEEEecchhhhhhcc
Q 048834 259 T-VVHNYLIHKRYLVILTDVRT------PDIWEIIKFLFPNSLSGSRVILSFREADAAMHRN 313 (1108)
Q Consensus 259 ~-~l~~~l~~kr~LlVLDDVw~------~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~ 313 (1108)
+ .+.+.|.-+.=|+|.|.--+ ..|.-.|...+. ...|--.+..|-|-.|+..+.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhc
Confidence 3 36788888999999997653 233222222222 234677888888888887654
No 318
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.082 Score=59.72 Aligned_cols=71 Identities=8% Similarity=0.133 Sum_probs=48.7
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
.+-|-++|++|+|||.||+++.++..| =|+.++.. +|++.+.++. .+.+.....+.-.
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~isAp--------eivSGvSGES-------EkkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSISAP--------EIVSGVSGES-------EKKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCC-------ceEeecch--------hhhcccCccc-------HHHHHHHHHHHhc
Confidence 455889999999999999999976332 25555432 4555655543 2333444455566
Q ss_pred CCeEEEEEcCCCC
Q 048834 267 HKRYLVILTDVRT 279 (1108)
Q Consensus 267 ~kr~LlVLDDVw~ 279 (1108)
.-.+++.+||++.
T Consensus 281 ~aPcivFiDeIDA 293 (802)
T KOG0733|consen 281 NAPCIVFIDEIDA 293 (802)
T ss_pred cCCeEEEeecccc
Confidence 7789999999984
No 319
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.63 E-value=0.32 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=19.2
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+|.|+|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999998743
No 320
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.63 E-value=0.11 Score=50.85 Aligned_cols=23 Identities=4% Similarity=0.118 Sum_probs=20.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999999864
No 321
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.62 E-value=0.08 Score=53.76 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=51.2
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHhh--cchH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKLL--ESPQ 258 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~~--~~l~ 258 (1108)
++|.|..|+|||+|++.+.+.. .=+..+++.+.+.. .+.++.+++...-..+.. +...... -...
T Consensus 18 ~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a 93 (215)
T PF00006_consen 18 IGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTA 93 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHH
T ss_pred EEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccc
Confidence 9999999999999999887542 23344888887664 555666666443111100 0000000 0011
Q ss_pred HHHHHHc--cCCeEEEEEcCCCCh
Q 048834 259 TVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 259 ~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
..+.+++ .+|.+|+++||+...
T Consensus 94 ~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 94 LTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHTTSEEEEEEETHHHH
T ss_pred hhhhHHHhhcCCceeehhhhhHHH
Confidence 1223333 699999999998653
No 322
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.59 E-value=0.016 Score=58.59 Aligned_cols=92 Identities=17% Similarity=0.090 Sum_probs=63.5
Q ss_pred CCCCcceEEEEec--cCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee----CCCc
Q 048834 953 LPPNLRILTLSLS--YLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI----GKEA 1026 (1108)
Q Consensus 953 ~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~----~~~~ 1026 (1108)
.+|+|+.|.++.| .....++.....+|+|++|++++|.+..-.-......+.+|..|++.+|+... +-. .+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHH
Confidence 3468999999888 55555666566779999999999987532122345667888899999887544 211 1235
Q ss_pred ccccceEeecccCCCCCCc
Q 048834 1027 MPELRELEIRCCKKMKKPI 1045 (1108)
Q Consensus 1027 l~~L~~L~i~~c~~l~lp~ 1045 (1108)
+|+|+.|+-.++..-..|.
T Consensus 142 l~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 142 LPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred hhhhccccccccCCccccc
Confidence 7889988888877766443
No 323
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.59 E-value=0.23 Score=54.95 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=31.6
Q ss_pred eehHHHHHHHHHH-hC----C-C-CceEEEEEEcCCCChHHHHHHHHhcCc
Q 048834 367 GLKDQLLRLAQLT-MS----S-S-SKYFLISVVGVAGSGKTTLVETIYNSS 410 (1108)
Q Consensus 367 g~~~~l~~i~~~l-~~----~-~-~~~~~i~i~G~~g~GKT~la~~~~~~~ 410 (1108)
|....++.+.+.+ .. . . ..+..++++|.+.+||++|..++..+.
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgee 202 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEE 202 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCc
Confidence 5556666666664 11 1 1 257899999999999999999996653
No 324
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=1.2 Score=49.34 Aligned_cols=208 Identities=19% Similarity=0.202 Sum_probs=112.2
Q ss_pred CCCceeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCccccccCce--eEEEEeccCCCcCHHHHH
Q 048834 361 PEAELVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY--HAWANVDVSHDFDLRKVF 436 (1108)
Q Consensus 361 ~~~~~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~--~~w~~v~~s~~~~~~~l~ 436 (1108)
.+..+.||+.++..+..++..+ ...+..+-|.|-+|.|||...+.++.+. .+.... ...++ .-..-....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~--~~~~~~~~~v~in--c~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSL--SKSSKSPVTVYIN--CTSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhh--hhhcccceeEEEe--eccccchHHHH
Confidence 3456689999999988888776 4557899999999999999999888763 221111 12222 22224456667
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHhcC-CceEEEEeCCCChhhH--HHHHHHhCCCCCCCCCEEEEEcCch--HHH
Q 048834 437 INILEQVTRVKIAEELALNELESRLIRLFQS-KRYLIVLDDVHLPGAW--YELQRIFSPNTSSSGSRVILLTREA--FVA 511 (1108)
Q Consensus 437 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~-k~~llvlDdv~~~~~~--~~l~~~~~~~~~~~~s~iivttr~~--~v~ 511 (1108)
..|...+...........+.+....++.-.. ..+++|+|+++....- ..+...|. ...-+++++++.--.. +..
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFe-wp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFE-WPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehh-cccCCcceeeeeeehhhhhHH
Confidence 7776666333222222222222222222233 3688999998742111 11222222 1112456655332111 111
Q ss_pred -------Hh-cCCCcceEecCCCChhhhHHHHhhhhcCcCC----chHHHHHHHHHHHHcCCchhHHHHHHHHh
Q 048834 512 -------RA-FSPSIILLQLRPLNVDESWELFLKKVGREKR----ASELLNLKEKIWKKCGGLPLAICVLGGLL 573 (1108)
Q Consensus 512 -------~~-~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~----~~~~~~~~~~i~~~~~glPlal~~~~~~l 573 (1108)
.. ..-....+...+.+.++..+.+......... +..++..+++++...|.+-.|+.++-+.+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 11 1223466777888888888888765533221 22344444444444455556665555444
No 325
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.58 E-value=0.72 Score=53.92 Aligned_cols=180 Identities=13% Similarity=0.137 Sum_probs=93.2
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-----------------eeEEEEec
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-----------------YHAWANVD 425 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-----------------~~~w~~v~ 425 (1108)
.+++|-+..++.+...+... ..+-++-.+|..|+||||+|+.+.....-...+. ...+..++
T Consensus 16 ~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 34678888888888877553 4566888999999999999988855421110000 00011111
Q ss_pred cCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEE
Q 048834 426 VSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVIL 503 (1108)
Q Consensus 426 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iiv 503 (1108)
.+....++++ +++...+.. .-..++.-++++|+++. ....+.+...+. ... ..+++++
T Consensus 95 aas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp-~~~~fIl 154 (509)
T PRK14958 95 AASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPP-SHVKFIL 154 (509)
T ss_pred ccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccC-CCeEEEE
Confidence 1111111111 111111110 01235667899999876 455666666554 111 3455554
Q ss_pred -EcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 504 -LTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 504 -ttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
|+....+..........+++..++.++....+...+....... .......+++.++|-+.
T Consensus 155 attd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR 215 (509)
T PRK14958 155 ATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVR 215 (509)
T ss_pred EECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHH
Confidence 4444444444444456778888888876665544432221111 11223345566666553
No 326
>PRK05642 DNA replication initiation factor; Validated
Probab=94.55 E-value=0.58 Score=48.78 Aligned_cols=122 Identities=20% Similarity=0.334 Sum_probs=64.8
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHh
Q 048834 386 YFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLF 465 (1108)
Q Consensus 386 ~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l 465 (1108)
...+.++|..|+|||.|++++++.. ...-..+.+++ ..++... .. .+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~------------~~~~~~~-----------~~----~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLP------------LAELLDR-----------GP----ELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEee------------HHHHHhh-----------hH----HHHHhh
Confidence 3568899999999999999887642 22123345555 1111110 01 122223
Q ss_pred cCCceEEEEeCCCC---hhhHHH-HHHHhCCCCCCCCCEEEEEcCchHHHHhc--C------CCcceEecCCCChhhhHH
Q 048834 466 QSKRYLIVLDDVHL---PGAWYE-LQRIFSPNTSSSGSRVILLTREAFVARAF--S------PSIILLQLRPLNVDESWE 533 (1108)
Q Consensus 466 ~~k~~llvlDdv~~---~~~~~~-l~~~~~~~~~~~~s~iivttr~~~v~~~~--~------~~~~~~~~~~L~~~~~~~ 533 (1108)
.... ++++||+.. ...|+. +...+.. ....|..+++|+....-.... . ....++.+.+++.++...
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~-~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNR-LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHH-HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 3222 678899863 234432 3333321 112466788877643321111 0 112567778888887777
Q ss_pred HHhhh
Q 048834 534 LFLKK 538 (1108)
Q Consensus 534 lf~~~ 538 (1108)
.+...
T Consensus 174 il~~k 178 (234)
T PRK05642 174 ALQLR 178 (234)
T ss_pred HHHHH
Confidence 76633
No 327
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.52 E-value=0.22 Score=59.07 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=26.0
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-+..+.+++..+. -..-+-++|..|+||||+|+.+.+
T Consensus 31 ~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 31 AMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred HHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHH
Confidence 44455555554432 223477899999999999988863
No 328
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.51 E-value=0.028 Score=60.93 Aligned_cols=41 Identities=5% Similarity=0.018 Sum_probs=30.9
Q ss_pred hhhhhhHHHhhhc----CCCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 170 NDEVKGLAELILS----DYPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 170 ~~~~~~~~~~l~~----~~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
++..+++++++.. .+..-++++++|++|+||||||+.+.+.
T Consensus 57 ~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 57 EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3455666666644 2345688999999999999999999854
No 329
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.51 E-value=0.15 Score=53.27 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=54.6
Q ss_pred EeEEccCCCChhhHH-HHhcCCcccccCCcce-eEEEcCCCC-CHHHHHHHHHHHhCCCch-----hHHHHhhcc-----
Q 048834 190 IPVVDVAGSAETPEL-WKIYSCDDIKNHFQCR-AWFLVPPRL-DKRELAINILNQFAPTDV-----ELEEKLLES----- 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla-~~v~~~~~~~~~F~~~-~~~~~s~~~-~~~~l~~~i~~~~~~~~~-----~~~~~~~~~----- 256 (1108)
++|.|..|+|||||| +.+.+. .+-+.+ +|+-+.+.. .+.++..++.+.=..+.. ..++.....
T Consensus 72 ~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~ 147 (274)
T cd01132 72 ELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPY 147 (274)
T ss_pred EEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHH
Confidence 999999999999995 667643 233554 677777765 455666666543111100 000000000
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh-hhHhHhhhh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP-DIWEIIKFL 289 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~-~~~~~l~~~ 289 (1108)
....+.+++ ++|.+|||+||+... +.|.++...
T Consensus 148 ~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 148 TGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 112233333 589999999999875 336555443
No 330
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.49 E-value=0.39 Score=59.20 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=30.8
Q ss_pred hhhhhhhHHHhhhc----CCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 169 LNDEVKGLAELILS----DYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 169 l~~~~~~~~~~l~~----~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
++.-++.|.++|.. +...-.++.++|.+|+||||+|+.+..
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 35666667776653 223456799999999999999999983
No 331
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.48 E-value=0.083 Score=59.61 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=52.7
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccC-CcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------h--HHHHhhcch
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNH-FQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------E--LEEKLLESP 257 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~-F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~--~~~~~~~~l 257 (1108)
++|.|-.|+|||||+..+... ...+ =+.++++-+.+.. .+.++..+++..=..+.. + ......-..
T Consensus 147 ~gIfa~~GvGKt~Ll~~i~~~--~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~ 224 (463)
T PRK09280 147 IGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT 224 (463)
T ss_pred EEeecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 899999999999998877532 2211 1457788787665 455666666653111100 0 000000111
Q ss_pred HHHHHHHc---cCCeEEEEEcCCCCh
Q 048834 258 QTVVHNYL---IHKRYLVILTDVRTP 280 (1108)
Q Consensus 258 ~~~l~~~l---~~kr~LlVLDDVw~~ 280 (1108)
...+.+++ .+|.|||++||+-..
T Consensus 225 a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 225 GLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHhcCCceEEEecchHHH
Confidence 23355555 679999999998754
No 332
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.48 E-value=0.084 Score=65.95 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=30.6
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.+...++..|.....+- +-+||.+|+||||+|+.+-.
T Consensus 184 ~~ei~~~i~iL~r~~~~n--~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 184 DEEIRRTIQVLQRRTKNN--PVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred HHHHHHHHHHHhcCCcCc--eEEECCCCCCHHHHHHHHHH
Confidence 577888888887765433 55899999999999988873
No 333
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.45 E-value=1 Score=46.40 Aligned_cols=146 Identities=17% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCCc-eEEEEEEcCCCChHHHHHHHHhcCccccccC--ceeEEEEeccCCCcCHHHHHHHHHHHHhhhh
Q 048834 371 QLLRLAQLTMSSSSK-YFLISVVGVAGSGKTTLVETIYNSSYIRQNF--EYHAWANVDVSHDFDLRKVFINILEQVTRVK 447 (1108)
Q Consensus 371 ~l~~i~~~l~~~~~~-~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f--~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~ 447 (1108)
.....++.+.+..+. ...+.++|..|.|||.|++++++. +.+.. ..+.+++ ..++...+...+...
T Consensus 18 ~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~--------~~~f~~~~~~~~~~~- 86 (219)
T PF00308_consen 18 LAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS--------AEEFIREFADALRDG- 86 (219)
T ss_dssp HHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE--------HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec--------HHHHHHHHHHHHHcc-
Confidence 334555556555332 334679999999999999999887 22221 1234444 334444444443321
Q ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC---hhhHH-HHHHHhCCCCCCCCCEEEEEcCchH---------HHHhc
Q 048834 448 IAEELALNELESRLIRLFQSKRYLIVLDDVHL---PGAWY-ELQRIFSPNTSSSGSRVILLTREAF---------VARAF 514 (1108)
Q Consensus 448 ~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~---~~~~~-~l~~~~~~~~~~~~s~iivttr~~~---------v~~~~ 514 (1108)
.. ..++..+. .-=++++||+.. ...|+ .+...+. .....|..+++++.... +....
T Consensus 87 -----~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n-~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl 155 (219)
T PF00308_consen 87 -----EI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFN-RLIESGKQLILTSDRPPSELSGLLPDLRSRL 155 (219)
T ss_dssp -----SH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHH-HHHHTTSEEEEEESS-TTTTTTS-HHHHHHH
T ss_pred -----cc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHH-HHHhhCCeEEEEeCCCCccccccChhhhhhH
Confidence 11 12233333 344788999865 22232 2222221 11125678888875432 11111
Q ss_pred CCCcceEecCCCChhhhHHHHhhhh
Q 048834 515 SPSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 515 ~~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
. ...++++.+.+.++...++.+.+
T Consensus 156 ~-~Gl~~~l~~pd~~~r~~il~~~a 179 (219)
T PF00308_consen 156 S-WGLVVELQPPDDEDRRRILQKKA 179 (219)
T ss_dssp H-CSEEEEE----HHHHHHHHHHHH
T ss_pred h-hcchhhcCCCCHHHHHHHHHHHH
Confidence 1 23567777777777777766554
No 334
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.44 E-value=0.45 Score=56.52 Aligned_cols=188 Identities=15% Similarity=0.153 Sum_probs=96.7
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccccc-------CceeEEEEeccCCCcCHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQN-------FEYHAWANVDVSHDFDLRKV 435 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~-------f~~~~w~~v~~s~~~~~~~l 435 (1108)
.+++|.+...+.+...+.. +..+-++.+.|..|+||||+|+.+.....-... .+.+.+- .-
T Consensus 24 ~dliGq~~~v~~L~~~~~~-gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c-----------~~ 91 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET-GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG-----------EH 91 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc-----------HH
Confidence 3567888888887777754 345678899999999999999988654211000 0000000 00
Q ss_pred HHHHHHHHhh----hhhhhhhhHHH---HHHHHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEE-EE
Q 048834 436 FINILEQVTR----VKIAEELALNE---LESRLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVI-LL 504 (1108)
Q Consensus 436 ~~~il~~l~~----~~~~~~~~~~~---l~~~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ii-vt 504 (1108)
.+.+...-.. .........++ +...+. .-+..+.-++|+|+++. ....+.+...+. ... ..+.+| +|
T Consensus 92 C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp-~~~~fIl~t 169 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPP-PHVKFIFAT 169 (598)
T ss_pred HHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCC-CCeEEEEEe
Confidence 0000000000 00000011122 211111 01234556789999865 344555555543 111 345544 45
Q ss_pred cCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhH
Q 048834 505 TREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLA 565 (1108)
Q Consensus 505 tr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 565 (1108)
+....+..........+++..++.++....+...+..... ..-.+....++..++|-+..
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~ 229 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRD 229 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 5555555555555678899999999888877665432211 11123344566677776543
No 335
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.39 E-value=0.11 Score=57.59 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.7
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|+|.+|+||||+|..+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999998876
No 336
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.38 E-value=0.14 Score=57.58 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=47.0
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCch-------h--HHHHhhcchH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDV-------E--LEEKLLESPQ 258 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~-------~--~~~~~~~~l~ 258 (1108)
..++|+|..|+|||||++.+....+ .....+++.--+.-++.++....+........ + ......-...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 4599999999999999999875321 12222333222333455444444443311110 0 0000001111
Q ss_pred HHHHHHc--cCCeEEEEEcCCCCh
Q 048834 259 TVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 259 ~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
..+.+++ ++|.||+++||+-..
T Consensus 243 ~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHcCCCEEEeccchHHH
Confidence 2233443 489999999998653
No 337
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.16 Score=50.22 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||.+.+..-
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999864
No 338
>PRK06762 hypothetical protein; Provisional
Probab=94.31 E-value=0.027 Score=55.42 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|.|+|+.|+||||+|+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 339
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.31 E-value=0.0021 Score=64.60 Aligned_cols=97 Identities=22% Similarity=0.199 Sum_probs=54.1
Q ss_pred cceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCC
Q 048834 936 NELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 936 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1015 (1108)
+.|++.||--..+++...+|.|+.|.|+-|.+.. ...+..|.+|+.|+|..|.+.+-.-..-+.++|+|+.|-|..+|
T Consensus 22 kKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 22 KKLNCWGCGLDDISICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred hhhcccCCCccHHHHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3344444433334444445678888888777653 33456777888888877765432112234567777777776666
Q ss_pred CCCceeeC-----CCcccccceEe
Q 048834 1016 ELREWTIG-----KEAMPELRELE 1034 (1108)
Q Consensus 1016 ~l~~lp~~-----~~~l~~L~~L~ 1034 (1108)
.-..-+.. +..+|+|++|+
T Consensus 100 Cc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 100 CCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccccchhHHHHHHHHcccchhcc
Confidence 44333221 22456666664
No 340
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.38 Score=55.83 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=25.3
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEe
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSF 303 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTT 303 (1108)
.+++-++|+|++.. ....++|...+....+...+|++|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~t 156 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCT 156 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 35666888999875 345677777666555566666555
No 341
>PRK06620 hypothetical protein; Validated
Probab=94.30 E-value=0.64 Score=47.60 Aligned_cols=46 Identities=24% Similarity=0.226 Sum_probs=29.4
Q ss_pred ceeee-hHHHHHHHHHHhCC-CCce--EEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGL-KDQLLRLAQLTMSS-SSKY--FLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~-~~~l~~i~~~l~~~-~~~~--~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
-++|. ....-...+.+.+. +..| ..+.++|.+|+|||++++.+.+.
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 34454 33333444444443 2234 67899999999999999987665
No 342
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.28 Score=58.44 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=25.2
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-+..+.+++..+. -...+-++|..|+||||+|+.+.+
T Consensus 23 ~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak 60 (576)
T PRK14965 23 HVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAK 60 (576)
T ss_pred HHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 33455555554432 223467899999999999987753
No 343
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.29 E-value=0.79 Score=57.30 Aligned_cols=210 Identities=20% Similarity=0.199 Sum_probs=114.3
Q ss_pred eeeehHHHHHHHHHHhCC-CCceEEEEEEcCCCChHHHHHHHHhcCc-cccccCceeEEEEec-cCCCcCHHHHHHHHHH
Q 048834 365 LVGLKDQLLRLAQLTMSS-SSKYFLISVVGVAGSGKTTLVETIYNSS-YIRQNFEYHAWANVD-VSHDFDLRKVFINILE 441 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~~~-~~~~~~i~i~G~~g~GKT~la~~~~~~~-~~~~~f~~~~w~~v~-~s~~~~~~~l~~~il~ 441 (1108)
++||+.+++.+...+.+- .|.-.++.+.|.+|+|||.+.+.+...- +.+..|-...+.... ...-....+.+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 478999888888887765 5667799999999999999999996652 111111111111100 1112233344555555
Q ss_pred HHhhhhhhhhh-------------------h---H------------------H-----HHHHHHH-HHhcCCceEEEEe
Q 048834 442 QVTRVKIAEEL-------------------A---L------------------N-----ELESRLI-RLFQSKRYLIVLD 475 (1108)
Q Consensus 442 ~l~~~~~~~~~-------------------~---~------------------~-----~l~~~l~-~~l~~k~~llvlD 475 (1108)
++......... . . . .+...+. .+...++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 44211100000 0 0 0 0011111 2234569999999
Q ss_pred CCCC--hhhHHHHHHHhCCCC--CCCCCEE--EEEcCchH-HHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHH
Q 048834 476 DVHL--PGAWYELQRIFSPNT--SSSGSRV--ILLTREAF-VARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASEL 548 (1108)
Q Consensus 476 dv~~--~~~~~~l~~~~~~~~--~~~~s~i--ivttr~~~-v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~ 548 (1108)
|+.- ....+-+........ ......+ ..+.+... ....-......+.+.+|+..+...+.....+... ...
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~--~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK--LLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--ccc
Confidence 9742 222232222222111 0001112 22222221 1122223457889999999999999887765532 333
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHhhcC
Q 048834 549 LNLKEKIWKKCGGLPLAICVLGGLLSTN 576 (1108)
Q Consensus 549 ~~~~~~i~~~~~glPlal~~~~~~l~~~ 576 (1108)
......+.++..|.|+.+..+-+.+...
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 4556678889999999999988888764
No 344
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.28 E-value=0.089 Score=58.54 Aligned_cols=52 Identities=8% Similarity=-0.008 Sum_probs=34.4
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCC
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPP 227 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~ 227 (1108)
.++..+|..+=..-.++.|.|.+|+|||||+..+.. .....-...+|++..+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EE 120 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEE 120 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCc
Confidence 444445544434556899999999999999988873 2333334566776543
No 345
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.28 E-value=1.4 Score=52.88 Aligned_cols=177 Identities=18% Similarity=0.196 Sum_probs=94.2
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccccc---Ccee-----------EEEEeccCCC
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQN---FEYH-----------AWANVDVSHD 429 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~---f~~~-----------~w~~v~~s~~ 429 (1108)
+++|-+...+.+...+... ..+.++-++|..|+|||++|+.+.....-... +..| .++.+.....
T Consensus 19 dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn 97 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASN 97 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecccc
Confidence 4578777777777777553 45667889999999999999888544100000 0000 0000001000
Q ss_pred cCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH-hcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCE-EEEEc
Q 048834 430 FDLRKVFINILEQVTRVKIAEELALNELESRLIRL-FQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSR-VILLT 505 (1108)
Q Consensus 430 ~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~-l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~-iivtt 505 (1108)
... .....+...+... +.++.-++|+|++.. ...+..+...+-. .. .... |++|+
T Consensus 98 ~~v-------------------d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-PP-~~tifILaTt 156 (725)
T PRK07133 98 NGV-------------------DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-PP-KHVIFILATT 156 (725)
T ss_pred CCH-------------------HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-CC-CceEEEEEcC
Confidence 000 1112222222111 235667889999865 4566666665541 11 2334 44555
Q ss_pred CchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 506 REAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 506 r~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
....+..........+++.+++.++....+...+...... ........++..++|-+
T Consensus 157 e~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~Gsl 213 (725)
T PRK07133 157 EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSL 213 (725)
T ss_pred ChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCH
Confidence 5555554445556788999999998887776543221111 11223445666676644
No 346
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.28 E-value=0.08 Score=53.53 Aligned_cols=53 Identities=17% Similarity=0.298 Sum_probs=35.4
Q ss_pred HHHHHHccCCeEEEEEcCCC------Chhh-HhHhhhhCCCCCCCcEEEEEecchhhhhhcc
Q 048834 259 TVVHNYLIHKRYLVILTDVR------TPDI-WEIIKFLFPNSLSGSRVILSFREADAAMHRN 313 (1108)
Q Consensus 259 ~~l~~~l~~kr~LlVLDDVw------~~~~-~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~ 313 (1108)
..+.+.|-...=+|+.|+=- +... ++.+... ....|.-||+.|.|..+|..+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~--~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLREL--NKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH--HHhcCCEEEEEcCCHHHHHhCC
Confidence 45777888888888888643 1222 3333332 1245889999999999998774
No 347
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.19 Score=52.92 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=43.6
Q ss_pred hhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHH
Q 048834 180 ILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 180 l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~ 236 (1108)
|..+=+.-+|+-|+|..|.||||+|-+++ ..++..-...+|+..-..+++.++.+
T Consensus 53 LGGGl~~g~ItEiyG~~gsGKT~lal~~~--~~aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 53 LGGGLPRGRITEIYGPESSGKTTLALQLV--ANAQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred hcCCcccceEEEEecCCCcchhhHHHHHH--HHhhcCCCeEEEEeCCCCCCHHHHHH
Confidence 33333556789999999999999998887 44666666889999999999888654
No 348
>PF14516 AAA_35: AAA-like domain
Probab=94.22 E-value=11 Score=41.71 Aligned_cols=209 Identities=12% Similarity=0.059 Sum_probs=112.7
Q ss_pred cCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCC---CcCHHHH
Q 048834 359 LGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSH---DFDLRKV 435 (1108)
Q Consensus 359 ~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~---~~~~~~l 435 (1108)
+..+.-+++|++..+++.+.|.+.+ ..+.|.|+-..|||++...+.+. +++.=..++++++..-. ..+..+.
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~--l~~~~~~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLER--LQQQGYRCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHH--HHHCCCEEEEEEeecCCCcccCCHHHH
Confidence 3445566788877778888776642 27889999999999999888665 32222233455532211 1244544
Q ss_pred HHHHHHHHhh----hhh-hhhh-----hHHHHHHHHHHHh---cCCceEEEEeCCCChh--------hHHHHHHHhCCCC
Q 048834 436 FINILEQVTR----VKI-AEEL-----ALNELESRLIRLF---QSKRYLIVLDDVHLPG--------AWYELQRIFSPNT 494 (1108)
Q Consensus 436 ~~~il~~l~~----~~~-~~~~-----~~~~l~~~l~~~l---~~k~~llvlDdv~~~~--------~~~~l~~~~~~~~ 494 (1108)
.+.+...+.. ... ...+ +...+...+.+.+ .++++++++|+++... -+..++..+.+..
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 4444443332 211 1111 2223333344432 2689999999987411 1222222222100
Q ss_pred -C-CCCC--EEEEEcCchHHHHhcC----CCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHH
Q 048834 495 -S-SSGS--RVILLTREAFVARAFS----PSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 495 -~-~~~s--~iivttr~~~v~~~~~----~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
. .... -+++.+.......... +-...+++..++.++...+....-.. . .. .....+....+|+|.-+
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~-~~---~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-F-SQ---EQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-C-CH---HHHHHHHHHHCCCHHHH
Confidence 0 0111 1222221111111111 11245778899999999988765322 1 11 12667888999999999
Q ss_pred HHHHHHhhcCC
Q 048834 567 CVLGGLLSTNR 577 (1108)
Q Consensus 567 ~~~~~~l~~~~ 577 (1108)
..++..+....
T Consensus 237 ~~~~~~l~~~~ 247 (331)
T PF14516_consen 237 QKACYLLVEEQ 247 (331)
T ss_pred HHHHHHHHHcc
Confidence 99988887643
No 349
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.21 E-value=0.11 Score=50.86 Aligned_cols=114 Identities=12% Similarity=0.020 Sum_probs=57.4
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcC--CCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVP--PRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s--~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
.+++|+|..|.|||||.+.+..-. ......+++.-. ...+..+..+ ..+.-- ..... -+...-.+.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~-~qLS~--G~~qrl~laral 97 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMV-YQLSV--GERQMVEIARAL 97 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEE-EecCH--HHHHHHHHHHHH
Confidence 459999999999999999998542 223344444211 1111111111 011000 00000 111122355666
Q ss_pred cCCeEEEEEcCCCCh---hhHhHhhhhCCC-CCCCcEEEEEecchhhhh
Q 048834 266 IHKRYLVILTDVRTP---DIWEIIKFLFPN-SLSGSRVILSFREADAAM 310 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~---~~~~~l~~~~~~-~~~GSrIiiTTR~~~Va~ 310 (1108)
-.+.=+++||+-.+. ...+.+...+.. ...|.-||+||.+...+.
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 667778888988642 222333322221 134677888888876443
No 350
>PRK06547 hypothetical protein; Provisional
Probab=94.20 E-value=0.034 Score=54.55 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=22.2
Q ss_pred CCCceEeEEccCCCChhhHHHHhcC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
....+|+|.|..|+||||+|+.+.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999974
No 351
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.19 E-value=0.027 Score=57.31 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.2
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
||||.|..|+||||||+.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999873
No 352
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.18 E-value=1.4 Score=48.77 Aligned_cols=197 Identities=15% Similarity=0.169 Sum_probs=105.5
Q ss_pred CCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccccc----CceeEEEEeccCCCcCHHHH
Q 048834 360 GPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQN----FEYHAWANVDVSHDFDLRKV 435 (1108)
Q Consensus 360 ~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~----f~~~~w~~v~~s~~~~~~~l 435 (1108)
..-..++|-+.....+...+... ..|-++.+.|..|+|||++|..+... +-+. +.... ......-...
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~--Llc~~~~~~~~~~-----~~~~~~~c~~ 91 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANH--ILSHPDPAEAPET-----LADPDPASPV 91 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHH--HcCCCccccCccc-----cCCCCCCCHH
Confidence 34456788888777777777543 45678999999999999999887554 1110 10000 0000000011
Q ss_pred HHHHHHH-------Hhhh--hh----hhhhhHHHHHHHHHHHh-----cCCceEEEEeCCCC--hhhHHHHHHHhCCCCC
Q 048834 436 FINILEQ-------VTRV--KI----AEELALNELESRLIRLF-----QSKRYLIVLDDVHL--PGAWYELQRIFSPNTS 495 (1108)
Q Consensus 436 ~~~il~~-------l~~~--~~----~~~~~~~~l~~~l~~~l-----~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~ 495 (1108)
.+.+... +... .. ......+++. .+.+++ .++..++|+|+++. ....+.+...+.+ ..
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE-pp 169 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE-PP 169 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-CC
Confidence 1111100 0000 00 0112223322 233333 35667899999875 4445556555542 22
Q ss_pred CCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHH
Q 048834 496 SSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVL 569 (1108)
Q Consensus 496 ~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~ 569 (1108)
....-|++++....+.....+....+.+.+++.++...++...... . . ........+...++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~-~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q-G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c-C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2233345555554555555556679999999999999988763211 1 1 11223456778899999754433
No 353
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.19 Score=51.07 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=73.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc----------------------cccccCceeEEEEeccCCCcCH----------HHH
Q 048834 388 LISVVGVAGSGKTTLVETIYNSS----------------------YIRQNFEYHAWANVDVSHDFDL----------RKV 435 (1108)
Q Consensus 388 ~i~i~G~~g~GKT~la~~~~~~~----------------------~~~~~f~~~~w~~v~~s~~~~~----------~~l 435 (1108)
.+.++|.+||||||+.+.+..-. .+.+.+.-.-|.++..+-.+.+ ...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~ 110 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARER 110 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHhHHHH
Confidence 88999999999999999984211 1222233344555322222111 112
Q ss_pred HHHHHHHHhhhhh----hhhhhHHHH-HHHHHHHhcCCceEEEEeCCCC---hhhHHHHHHHhCCCCCCCCCEEEEEcCc
Q 048834 436 FINILEQVTRVKI----AEELALNEL-ESRLIRLFQSKRYLIVLDDVHL---PGAWYELQRIFSPNTSSSGSRVILLTRE 507 (1108)
Q Consensus 436 ~~~il~~l~~~~~----~~~~~~~~l-~~~l~~~l~~k~~llvlDdv~~---~~~~~~l~~~~~~~~~~~~s~iivttr~ 507 (1108)
...++...+.... ...+|-..- ...+.+.+...+-++.+|+-+. ...-..+...+..-|...+..+++.|++
T Consensus 111 a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHd 190 (248)
T COG1116 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190 (248)
T ss_pred HHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCC
Confidence 2333333222111 111222211 2236788888999999999654 2222333333333344567888999999
Q ss_pred hHHHHhcCCCcceEe
Q 048834 508 AFVARAFSPSIILLQ 522 (1108)
Q Consensus 508 ~~v~~~~~~~~~~~~ 522 (1108)
.+.+..+++...++.
T Consensus 191 i~EAv~LsdRivvl~ 205 (248)
T COG1116 191 VDEAVYLADRVVVLS 205 (248)
T ss_pred HHHHHhhhCEEEEec
Confidence 988888875443333
No 354
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.14 E-value=0.084 Score=65.74 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=30.3
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.+...++..|..+..+- +-+||.+|+||||+|+.+.+
T Consensus 193 ~~ei~~~i~~l~r~~~~n--~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 193 DDEIRQMIDILLRRRQNN--PILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred HHHHHHHHHHHhcCCcCc--eeEECCCCCCHHHHHHHHHH
Confidence 567888888887654433 55999999999999999884
No 355
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.12 E-value=0.31 Score=46.75 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=18.6
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
||.|+|.+|+||||+|+.+-
T Consensus 1 ~i~i~G~~GsGKSTla~~L~ 20 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALE 20 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHH
Confidence 58899999999999999987
No 356
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.12 E-value=0.034 Score=56.07 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=21.0
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
+..+|.|+|++|+||||+|+.+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999987
No 357
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.94 Score=53.35 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=90.0
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccC--cee---------------EEEEecc
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNF--EYH---------------AWANVDV 426 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f--~~~---------------~w~~v~~ 426 (1108)
+++|-+...+.+...+.. +..+-++.++|..|+||||+|+.+.....-.... ..+ .+..++.
T Consensus 17 divGq~~v~~~L~~~i~~-~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQ-QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 457877777777777654 3446678899999999999998885442110000 000 0111001
Q ss_pred CCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEE-
Q 048834 427 SHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVIL- 503 (1108)
Q Consensus 427 s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iiv- 503 (1108)
+.....++ .+++..... ..-..+++-++|+|+++. ....+.+...+. ... ..+.+|+
T Consensus 96 ~~~~~vd~-ir~l~~~~~-----------------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp-~~~~fIL~ 155 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQ-----------------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPP-EHVKFILA 155 (527)
T ss_pred cccCCHHH-HHHHHHHHh-----------------hCcccCCceEEEEcCcccCCHHHHHHHHHHHh-CCC-CCEEEEEE
Confidence 11111111 111111110 001235667899999876 334555665554 111 3444444
Q ss_pred EcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 504 LTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 504 ttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
|+....+..........+++..++.++....+...+...... ........+++.++|-+.
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMR 215 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 444333332233334677888888888777665544222111 112223445666677543
No 358
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.10 E-value=0.028 Score=57.87 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=19.4
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+|||.|..|+||||+|+.+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 599999999999999999984
No 359
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.09 E-value=0.24 Score=55.13 Aligned_cols=38 Identities=26% Similarity=0.233 Sum_probs=30.2
Q ss_pred hhhHHHhhhcCC-CCCceEeEEccCCCChhhHHHHhcCC
Q 048834 173 VKGLAELILSDY-PSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 173 ~~~~~~~l~~~~-~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+.+.+.+...+ ....+|||.|.=|+||||+.+.+.+.
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 455666666654 67788999999999999999999843
No 360
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.08 E-value=0.16 Score=53.16 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=38.7
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHH
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAIN 237 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~ 237 (1108)
..+..+|..+=+.-+++.|+|.+|+||||||.++.. ..++ +=..++|++..+. ...+.+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~-~~~~-~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVY-GALK-QGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHH-HHHh-CCCEEEEEEcCCC--HHHHHHH
Confidence 444455544556678899999999999999988741 1122 2245668877654 3445444
No 361
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.08 E-value=0.1 Score=58.67 Aligned_cols=90 Identities=13% Similarity=0.075 Sum_probs=54.4
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHh-CCCch-------h--HHHHhhcchH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQF-APTDV-------E--LEEKLLESPQ 258 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~-~~~~~-------~--~~~~~~~~l~ 258 (1108)
++|.|..|+|||||+..+-+... +.+-+.++|+-+.+.. .+.++..++...= ..+.. + ......-...
T Consensus 141 ~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a 219 (449)
T TIGR03305 141 AGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTA 219 (449)
T ss_pred EEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999999999988754321 2334788898887765 4455666655431 11100 0 0000011122
Q ss_pred HHHHHHcc---CCeEEEEEcCCCCh
Q 048834 259 TVVHNYLI---HKRYLVILTDVRTP 280 (1108)
Q Consensus 259 ~~l~~~l~---~kr~LlVLDDVw~~ 280 (1108)
..+.++++ ++.|||++||+-..
T Consensus 220 ~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 220 LTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHhcCCceEEEecChHHH
Confidence 33556654 68999999999764
No 362
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=1.7 Score=49.17 Aligned_cols=178 Identities=15% Similarity=0.206 Sum_probs=89.1
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccc------cccCceeEEEEeccCCCcCHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYI------RQNFEYHAWANVDVSHDFDLRKVF 436 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~------~~~f~~~~w~~v~~s~~~~~~~l~ 436 (1108)
.+++|.+...+.+.+.+.. +..+..+.++|..|+|||++|+.+.....- ...|..... .+.........+ .
T Consensus 17 ~~iig~~~~~~~l~~~i~~-~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-i 93 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN-NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF-ELDAASNNSVDD-I 93 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE-EeccccCCCHHH-H
Confidence 3457888888878777765 345678889999999999999888554110 011111111 100111111111 1
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEc-CchHHHHh
Q 048834 437 INILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLT-REAFVARA 513 (1108)
Q Consensus 437 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivtt-r~~~v~~~ 513 (1108)
.++..+... .. +.+++-++++|++.. ...++.+...+. . ....+.+++++ ....+...
T Consensus 94 ~~l~~~~~~----------------~p-~~~~~kiviIDE~~~l~~~~~~~ll~~le-~-~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 94 RNLIDQVRI----------------PP-QTGKYKIYIIDEVHMLSSAAFNAFLKTLE-E-PPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHhh----------------cc-ccCCcEEEEEeChhhcCHHHHHHHHHHHh-C-CCCceEEEEEeCCcccCCHH
Confidence 111111100 01 123556799998764 334555555443 1 11334444443 33333333
Q ss_pred cCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 514 FSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 514 ~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
.......++..+++.++....+...+..... .--.+....++..++|-+
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdl 203 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGAL 203 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCH
Confidence 3334457888888888877776654422111 011233344555566533
No 363
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.07 E-value=1.2 Score=50.07 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=93.2
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccc--------------------ccCceeEEEE
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIR--------------------QNFEYHAWAN 423 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~--------------------~~f~~~~w~~ 423 (1108)
+++|.+..++.+.+.+.. +..+.++.++|..|.|||++|+.+.....-. .+++.. ++.
T Consensus 15 ~iig~~~~~~~l~~~~~~-~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~-~~~ 92 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKN-GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI-EID 92 (355)
T ss_pred hccCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE-Eee
Confidence 457888888888877754 3446688899999999999998875441100 011111 111
Q ss_pred eccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEE
Q 048834 424 VDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRV 501 (1108)
Q Consensus 424 v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~i 501 (1108)
........ ..+++...+.. .-+.+++-++++|++.. ....+.+...+. .....+.+
T Consensus 93 --~~~~~~~~-~~~~l~~~~~~-----------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le--~~~~~~~l 150 (355)
T TIGR02397 93 --AASNNGVD-DIREILDNVKY-----------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLE--EPPEHVVF 150 (355)
T ss_pred --ccccCCHH-HHHHHHHHHhc-----------------CcccCCceEEEEeChhhcCHHHHHHHHHHHh--CCccceeE
Confidence 11111111 01111111110 01224556888999764 344555655553 22244555
Q ss_pred EEEcCch-HHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHH
Q 048834 502 ILLTREA-FVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 502 ivttr~~-~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
|+++.+. .+..........++..+++.++....+...+..... ..-......++..++|-|..+
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a 215 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDA 215 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHH
Confidence 5555433 333333334467788888888877777654422111 111234445566677766443
No 364
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.06 E-value=0.03 Score=55.49 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=19.5
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
||+|.|..|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999984
No 365
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.06 E-value=0.038 Score=55.44 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=58.2
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
-.++.|+|..|.||||+++.+..- +...- ..+.+......... ..... ++..................++..++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~--i~~~~-~~i~ied~~E~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF--IPPDE-RIITIEDTAELQLP--HPNWV-RLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh--cCCCC-CEEEECCccccCCC--CCCEE-EEEEecCCCCCCCccCHHHHHHHHhc
Confidence 356999999999999999998743 22211 11222111011000 00000 00000000000011234556777787
Q ss_pred CCeEEEEEcCCCChhhHhHhhhhCCCCCCCcE-EEEEecchhhh
Q 048834 267 HKRYLVILTDVRTPDIWEIIKFLFPNSLSGSR-VILSFREADAA 309 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSr-IiiTTR~~~Va 309 (1108)
...=.+|++.+.+.+.|+.+... ..|.. ++-|..-.++.
T Consensus 99 ~~pd~i~igEir~~ea~~~~~a~----~tGh~g~~~T~Ha~s~~ 138 (186)
T cd01130 99 MRPDRIIVGEVRGGEALDLLQAM----NTGHPGGMTTIHANSAE 138 (186)
T ss_pred cCCCEEEEEccCcHHHHHHHHHH----hcCCCCceeeecCCCHH
Confidence 77778889999998888766543 34555 55554444333
No 366
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.05 E-value=0.36 Score=49.19 Aligned_cols=93 Identities=6% Similarity=0.056 Sum_probs=50.7
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCe
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKR 269 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr 269 (1108)
+-+||..|.|||++++++.+...-+. .--|.|++. ...++..+...|+ -+..|
T Consensus 55 vLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~---------------------~L~~l~~l~~~l~--~~~~k 107 (249)
T PF05673_consen 55 VLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE---------------------DLGDLPELLDLLR--DRPYK 107 (249)
T ss_pred eEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH---------------------HhccHHHHHHHHh--cCCCC
Confidence 66799999999999999985311111 112333321 1111222222222 24579
Q ss_pred EEEEEcCCC---ChhhHhHhhhhCCCC---CCCcEEE-EEecchhhh
Q 048834 270 YLVILTDVR---TPDIWEIIKFLFPNS---LSGSRVI-LSFREADAA 309 (1108)
Q Consensus 270 ~LlVLDDVw---~~~~~~~l~~~~~~~---~~GSrIi-iTTR~~~Va 309 (1108)
|+|.+||.. ++.....|+..+..+ .|..-+| .||--.++.
T Consensus 108 FIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 108 FILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 999999986 334466666666433 2334444 455444444
No 367
>PRK04040 adenylate kinase; Provisional
Probab=94.04 E-value=0.033 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.0
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|++|+||||+++.+.+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4799999999999999999973
No 368
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.02 E-value=0.24 Score=53.59 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=49.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC-CCHHHHHHHHHHHhCCCch--------h--HHHHhhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR-LDKRELAINILNQFAPTDV--------E--LEEKLLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~-~~~~~l~~~i~~~~~~~~~--------~--~~~~~~~~ 256 (1108)
..++|+|..|.|||||++.+.+... -++.++..+... -++..+..+.+..-..... + ......-.
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999999986422 234455555433 3455555544443211100 0 00000011
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ ++|.|||++||+-..
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEeccchHH
Confidence 112233333 589999999998753
No 369
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.8 Score=51.24 Aligned_cols=105 Identities=10% Similarity=0.196 Sum_probs=63.6
Q ss_pred hhhhhhHHHhhhcCC-------CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEc-CCCCCHHHHHHHHHHH
Q 048834 170 NDEVKGLAELILSDY-------PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLV-PPRLDKRELAINILNQ 241 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~-------~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~-s~~~~~~~l~~~i~~~ 241 (1108)
..|.++|++.|.+.+ .=.+-|-.+|++|.|||-||++|.....|- |.+. ...|+..
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~sGSEFdEm--------- 376 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-------FFYASGSEFDEM--------- 376 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-------eEeccccchhhh---------
Confidence 367788888887632 234558899999999999999999764431 2222 2233322
Q ss_pred hCCCchhHHHHhhcchHHHHHHHc----cCCeEEEEEcCCCCh-------------hhHhHhhhhCCCCCCCcEEEE
Q 048834 242 FAPTDVELEEKLLESPQTVVHNYL----IHKRYLVILTDVRTP-------------DIWEIIKFLFPNSLSGSRVIL 301 (1108)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~l~~~l----~~kr~LlVLDDVw~~-------------~~~~~l~~~~~~~~~GSrIii 301 (1108)
-+..++..+++.. ..-.+.|.+|.++.. ..++.|+..++.|.+..=|||
T Consensus 377 -----------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 377 -----------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred -----------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 1233333333322 345688888988731 125677777776654444443
No 370
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.97 E-value=0.11 Score=52.48 Aligned_cols=21 Identities=19% Similarity=-0.001 Sum_probs=19.5
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
++++|.|..|.|||||.+.+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 689999999999999998886
No 371
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.95 E-value=0.15 Score=63.99 Aligned_cols=95 Identities=9% Similarity=0.120 Sum_probs=48.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchh-HHHHhhcchHHHHHHHc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVE-LEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~-~~~~~~~~l~~~l~~~l 265 (1108)
..++-++|..|+|||++|+.+-. .....-...+.+..|.-.+...+ ..+.+.... ... ++ ...+.+.+
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~--~l~~~~~~~i~~d~s~~~~~~~~-----~~l~g~~~g~~g~---~~-~g~l~~~v 663 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAE--FLFDDEDAMVRIDMSEYMEKHSV-----ARLIGAPPGYVGY---EE-GGQLTEAV 663 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH--HhcCCCCcEEEEechhhcccchH-----HHhcCCCCCccCc---cc-ccHHHHHH
Confidence 45678999999999999999873 22222223334444432221111 111111100 000 00 01233334
Q ss_pred cCC-eEEEEEcCCCC--hhhHhHhhhhCCC
Q 048834 266 IHK-RYLVILTDVRT--PDIWEIIKFLFPN 292 (1108)
Q Consensus 266 ~~k-r~LlVLDDVw~--~~~~~~l~~~~~~ 292 (1108)
+.+ .-+|+||+|.. .+.++.|...+..
T Consensus 664 ~~~p~~vlllDeieka~~~v~~~Ll~~l~~ 693 (852)
T TIGR03346 664 RRKPYSVVLFDEVEKAHPDVFNVLLQVLDD 693 (852)
T ss_pred HcCCCcEEEEeccccCCHHHHHHHHHHHhc
Confidence 333 34889999985 4557777766643
No 372
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.95 E-value=0.12 Score=64.57 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=20.2
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..++-++|..|+||||+|+.+.+
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999983
No 373
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.95 E-value=0.31 Score=58.27 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEe-cchhhh
Q 048834 268 KRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSF-READAA 309 (1108)
Q Consensus 268 kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTT-R~~~Va 309 (1108)
++=++|+|++.. ...++.|...+..-...+.+|++| +...+.
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl 165 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL 165 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence 344668898875 455888888776655677766555 444444
No 374
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.93 E-value=0.049 Score=51.72 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=25.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEE
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWF 223 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~ 223 (1108)
.||-|.|..|.||||||+++. .+....-....++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~--~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALE--RRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHH--HHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHH--HHHHHcCCcEEEe
Confidence 478899999999999999999 5555554444444
No 375
>PRK08116 hypothetical protein; Validated
Probab=93.91 E-value=0.61 Score=49.63 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=25.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEE
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWAN 423 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~ 423 (1108)
..+.++|..|.|||.||.++++. +...-....+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence 45889999999999999999887 332223345555
No 376
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.90 E-value=0.53 Score=56.42 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=94.0
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQ 442 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~ 442 (1108)
.+++|-+...+.+...+... ..+.++.++|..|+|||++|+.+.... .+.... . ...........+.+...
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l--~c~~~~----~--~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAV--NCTTND----P--KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHh--cCCCCC----C--CCCCCccCHHHHHHhcC
Confidence 35678887777777766553 345678899999999999999886542 110000 0 00000000111111110
Q ss_pred Hhhh----hhhhhhhHHHH---HHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEc-CchHHH
Q 048834 443 VTRV----KIAEELALNEL---ESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLT-REAFVA 511 (1108)
Q Consensus 443 l~~~----~~~~~~~~~~l---~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivtt-r~~~v~ 511 (1108)
.... ........+++ ...+.. -...++-++|+|++.. ....+.+...+. .....+.+|+++ ....+.
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE--epp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE--EPPPHAIFILATTEVHKVP 164 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh--cCCCCeEEEEEeCChhhhh
Confidence 0000 00000111111 111111 0124567899999864 345566655554 111345555444 434444
Q ss_pred HhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHH
Q 048834 512 RAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 512 ~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
.........+.+..++..+....+...+...... .-.+....++..++|-+..+
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~a 218 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDA 218 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4344445677888888887777665544322111 11233445666777766433
No 377
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.86 E-value=0.1 Score=56.95 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=61.7
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
-..|.|+|..|.|||||++++... +.... ..+.+.-........ .....-..... ......-.....++..|+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~~l~~~~~--~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYVHLFYSKG--GQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEEEEEecCC--CCCcCccCHHHHHHHHhc
Confidence 356999999999999999998843 32221 122222111111110 00000000000 000111234556777888
Q ss_pred CCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhh
Q 048834 267 HKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAM 310 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~ 310 (1108)
...=.||+|.+...+.|+.+.... .++.| ++.|+...+++.
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l~a~~-~g~~~--~i~T~Ha~~~~~ 257 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFIRAVN-TGHPG--SITTLHAGSPEE 257 (308)
T ss_pred CCCCeEEEeccCCHHHHHHHHHHh-cCCCe--EEEEEeCCCHHH
Confidence 888889999999988777655432 22222 577877776554
No 378
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.86 E-value=0.097 Score=56.24 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=20.3
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.-.+|+|+|..|+||||++..+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999988876
No 379
>PRK03839 putative kinase; Provisional
Probab=93.84 E-value=0.035 Score=55.48 Aligned_cols=22 Identities=14% Similarity=0.062 Sum_probs=19.6
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.|.|+||+|+||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999843
No 380
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.83 E-value=0.16 Score=56.92 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=54.8
Q ss_pred EeEEccCCCChhhHHHHhcCCccccc--CCc---------ceeEEEcCCCCCHHHHHHHHHHHhC-CCch--------h-
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKN--HFQ---------CRAWFLVPPRLDKRELAINILNQFA-PTDV--------E- 248 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~--~F~---------~~~~~~~s~~~~~~~l~~~i~~~~~-~~~~--------~- 248 (1108)
+||.|-.|+|||||+..+-+..+..+ -.| .++++-+.+.....+.+.+.+.+-. .+.. +
T Consensus 144 igIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p 223 (466)
T TIGR01040 144 IPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDP 223 (466)
T ss_pred eeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCC
Confidence 99999999999999988875543110 022 5677788888666665665555533 1111 0
Q ss_pred -HHHHhhcchHHHHHHHcc---CCeEEEEEcCCCCh
Q 048834 249 -LEEKLLESPQTVVHNYLI---HKRYLVILTDVRTP 280 (1108)
Q Consensus 249 -~~~~~~~~l~~~l~~~l~---~kr~LlVLDDVw~~ 280 (1108)
..-...-.....+.++++ +|.||+++||+-..
T Consensus 224 ~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 224 TIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 000000111223555555 69999999998653
No 381
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.83 E-value=0.032 Score=54.74 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
-.+|+|-||=|+||||||+.+-++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 457999999999999999998844
No 382
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.82 E-value=0.2 Score=56.22 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=51.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCC-HHHHHHHHHHHhCCCch--------hHHHH--hhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLD-KRELAINILNQFAPTDV--------ELEEK--LLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~-~~~l~~~i~~~~~~~~~--------~~~~~--~~~~ 256 (1108)
..++|.|..|+|||||.+.+.+.. .-++++++-+.+... +.++..+.+..-..+.. +.... ..-.
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 459999999999999999999652 235677888877653 34444333322111100 00000 0000
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .+|.||+++||+-..
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112234444 589999999998754
No 383
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.82 E-value=0.7 Score=52.32 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=35.7
Q ss_pred ceeeehHHHHHHHHHHhC---------C--CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS---------S--SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~---------~--~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
++.|++..++++...+.. . -..|..+.++|.+|+|||++|+++++.
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 446888888888776632 1 134778999999999999999999875
No 384
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.82 E-value=0.44 Score=55.37 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
+++-++|+|++.. .+..++|+..+....+.+++|++|.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 4555778899975 45578888777665667887777755
No 385
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.82 E-value=0.15 Score=50.58 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.4
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
++.++|++|+||||+++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68899999999999998887
No 386
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.80 E-value=0.39 Score=53.40 Aligned_cols=116 Identities=13% Similarity=-0.020 Sum_probs=64.2
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcc-----ccc--------------CCcceeEEEcCCCCC-
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDD-----IKN--------------HFQCRAWFLVPPRLD- 230 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~-----~~~--------------~F~~~~~~~~s~~~~- 230 (1108)
.....+..|......-..-+-++|+.|+||||+|.++-+.-- ... .......+.-|....
T Consensus 8 ~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~ 87 (325)
T COG0470 8 EAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI 87 (325)
T ss_pred hHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC
Confidence 344455555553332222488999999999999877753210 000 011222232233322
Q ss_pred --HHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEec
Q 048834 231 --KRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 231 --~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
..+..+++.+...... ..+++-++++|+++.. +.-.+++..+......+++|++|.
T Consensus 88 ~i~~~~vr~~~~~~~~~~------------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 88 DIIVEQVRELAEFLSESP------------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cchHHHHHHHHHHhccCC------------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 2333333333322111 1456778889999864 446677776666677889998886
No 387
>PRK00625 shikimate kinase; Provisional
Probab=93.80 E-value=0.037 Score=54.25 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=18.4
Q ss_pred EeEEccCCCChhhHHHHhcC
Q 048834 190 IPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~ 209 (1108)
|-++||.|+||||+|+.+-+
T Consensus 3 I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999963
No 388
>PRK05922 type III secretion system ATPase; Validated
Probab=93.79 E-value=0.13 Score=57.76 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=48.7
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------h--HHHHhhcch
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------E--LEEKLLESP 257 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~--~~~~~~~~l 257 (1108)
.++|+|..|+|||||.+.+.+.. .-+..+++.+.+.. .+.....+.......+.. + ......-..
T Consensus 159 rigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~ 234 (434)
T PRK05922 159 RIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRA 234 (434)
T ss_pred EEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHH
Confidence 39999999999999999998542 23444555454433 233444444333222111 0 000000011
Q ss_pred HHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 258 QTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 258 ~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
...+.+++ .+|.||+++||+-..
T Consensus 235 a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 235 AMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHcCCCEEEeccchhHH
Confidence 12244444 589999999998754
No 389
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.43 Score=57.16 Aligned_cols=124 Identities=5% Similarity=0.006 Sum_probs=0.0
Q ss_pred hHhhhcccccccchhhhhhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCc--------------
Q 048834 153 SEAANSNKKTGMLDFILNDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQ-------------- 218 (1108)
Q Consensus 153 ~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~-------------- 218 (1108)
.+++|. ++..+..........-..-+-++|..|+||||+|+.+.+.--....+.
T Consensus 16 ~~liGq------------~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQ------------EAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred hhccCh------------HHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Q ss_pred -------ceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCC--ChhhHhHhhhh
Q 048834 219 -------CRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVR--TPDIWEIIKFL 289 (1108)
Q Consensus 219 -------~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw--~~~~~~~l~~~ 289 (1108)
..+.+.-.....+..+ +++++.+.... ..+++-++|+|++. +...++.|+..
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~I-Reii~~a~~~p------------------~~~~~KViIIDEad~Lt~~a~naLLK~ 144 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNI-RELIERAQFAP------------------VQARWKVYVIDECHMLSTAAFNALLKT 144 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHH-HHHHHHHhhCh------------------hcCCceEEEEECccccCHHHHHHHHHH
Q ss_pred CCCCCCCcEEEEEecchh
Q 048834 290 FPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 290 ~~~~~~GSrIiiTTR~~~ 307 (1108)
+..-.....+|++|.+.+
T Consensus 145 LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 145 LEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HhcCCcCeEEEEEeCChh
No 390
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.78 E-value=0.28 Score=53.52 Aligned_cols=67 Identities=7% Similarity=0.007 Sum_probs=43.3
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCC----cceeEEEcCCCCCHHHHHHHHHHHh
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF----QCRAWFLVPPRLDKRELAINILNQF 242 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F----~~~~~~~~s~~~~~~~l~~~i~~~~ 242 (1108)
.+..+|..+=..-.++.|+|.+|+||||||..+.-........ ...+|+.....|...++. ++.+.+
T Consensus 84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~-~ia~~~ 154 (316)
T TIGR02239 84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLL-AIAERY 154 (316)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHH-HHHHHc
Confidence 3444454444567889999999999999998876211121111 256899888778887743 344444
No 391
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.78 E-value=0.12 Score=57.36 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=67.0
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEE-cCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFL-VPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~-~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
-.+|.|.|..|.||||+++.+.+. +..+...+++.. ....+.... ...+..+. . .. .........++..|
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~tiEdp~E~~~~~-~~~~i~q~---e--vg-~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIITIEDPIEYVHRN-KRSLINQR---E--VG-LDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEEEcCChhhhccC-ccceEEcc---c--cC-CCCcCHHHHHHHhh
Confidence 356999999999999999998743 544555554432 111111000 00011110 0 00 01234566788889
Q ss_pred cCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhh
Q 048834 266 IHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAM 310 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~ 310 (1108)
+...=.|++|.+.+.+.+...... ...|.-|+.|+-..+++.
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHHH
Confidence 888889999999988877653332 245667777777666654
No 392
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.76 E-value=0.16 Score=63.85 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=30.2
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.++..++..|.....+- +-+||.+|+||||+|+.+..
T Consensus 179 ~~ei~~~~~~l~r~~~~n--~lL~G~pGvGKT~l~~~la~ 216 (852)
T TIGR03346 179 DEEIRRTIQVLSRRTKNN--PVLIGEPGVGKTAIVEGLAQ 216 (852)
T ss_pred HHHHHHHHHHHhcCCCCc--eEEEcCCCCCHHHHHHHHHH
Confidence 577888888887655433 55899999999999998873
No 393
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.17 Score=50.01 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999864
No 394
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.75 E-value=0.075 Score=49.02 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=27.3
Q ss_pred hhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 172 EVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 172 ~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+.+++...|...=..-.+|.+.|.-|.||||+++.+.+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 344444444332234457999999999999999999854
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.74 E-value=0.31 Score=53.83 Aligned_cols=86 Identities=14% Similarity=0.016 Sum_probs=45.0
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCC--cceeEEEcC-CCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHF--QCRAWFLVP-PRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHN 263 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F--~~~~~~~~s-~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 263 (1108)
-.++.++|..|+||||++..+.. +....+ ..+.+++.. ......+-++...+.+.-.... ..+...+...+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~--~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l~- 211 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA--RCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLALA- 211 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHHH-
Confidence 46899999999999999988873 233333 234455432 2233344444444444322211 111223333333
Q ss_pred HccCCeEEEEEcCCC
Q 048834 264 YLIHKRYLVILTDVR 278 (1108)
Q Consensus 264 ~l~~kr~LlVLDDVw 278 (1108)
.+.++.+ |++|..-
T Consensus 212 ~l~~~Dl-VLIDTaG 225 (374)
T PRK14722 212 ELRNKHM-VLIDTIG 225 (374)
T ss_pred HhcCCCE-EEEcCCC
Confidence 3555554 5578875
No 396
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.73 E-value=0.25 Score=54.95 Aligned_cols=110 Identities=9% Similarity=0.112 Sum_probs=65.2
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
..+.-+-+.|.+|+|||+||..+. ..+.|.. |.+-.. +++. +. .+......+.....+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA----~~S~FPF---vKiiSp---e~mi-------G~----sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIA----LSSDFPF---VKIISP---EDMI-------GL----SESAKCAHIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHH----hhcCCCe---EEEeCh---HHcc-------Cc----cHHHHHHHHHHHHHHh
Confidence 345556778999999999999988 4577763 322111 1110 00 0111122333344455
Q ss_pred ccCCeEEEEEcCCCChhh------------HhHhhhhCCCC-CCCcEEE--EEecchhhhhhcccc
Q 048834 265 LIHKRYLVILTDVRTPDI------------WEIIKFLFPNS-LSGSRVI--LSFREADAAMHRNLN 315 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~~~~------------~~~l~~~~~~~-~~GSrIi--iTTR~~~Va~~~~~~ 315 (1108)
-++.=-.||+||+-.--+ +++|...+... .+|-|.+ -||-...|++.|+..
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~ 660 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGIL 660 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHH
Confidence 566777899999964333 45666555443 3466644 488888999988764
No 397
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.69 E-value=0.13 Score=55.60 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=33.3
Q ss_pred CCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCH
Q 048834 183 DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDK 231 (1108)
Q Consensus 183 ~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~ 231 (1108)
+=+.-+++-|+|.+|+||||||-++. ......=..++|+..-+.++.
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~--~~~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAI--AEAQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHH--HHHHHcCCcEEEEcccchhHH
Confidence 33556789999999999999998776 334444455678876655554
No 398
>PRK09354 recA recombinase A; Provisional
Probab=93.64 E-value=0.15 Score=55.61 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=38.2
Q ss_pred HHHhhh-cCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH
Q 048834 176 LAELIL-SDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR 232 (1108)
Q Consensus 176 ~~~~l~-~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~ 232 (1108)
+..+|. .+=+.-+++-|+|..|+||||||-++. ......=...+|+..-..++..
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~--~~~~~~G~~~~yId~E~s~~~~ 103 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAI--AEAQKAGGTAAFIDAEHALDPV 103 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHH--HHHHHcCCcEEEECCccchHHH
Confidence 334444 333556789999999999999998776 3344455667788877766653
No 399
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.63 E-value=0.23 Score=55.78 Aligned_cols=106 Identities=9% Similarity=0.054 Sum_probs=64.2
Q ss_pred eeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHh
Q 048834 365 LVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVT 444 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~ 444 (1108)
+++.+..++.+...+... ..+.+.|++|+|||++|+.++........++...|+. .+..+...+++......
T Consensus 177 ~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt--FHpsySYeDFI~G~rP~-- 248 (459)
T PRK11331 177 LFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ--FHQSYSYEDFIQGYRPN-- 248 (459)
T ss_pred ccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe--ecccccHHHHhcccCCC--
Confidence 456677788888887653 3677899999999999999987643445677788888 76666654443222110
Q ss_pred hhhhhhhhhHHHHHHHHHHHh--cCCceEEEEeCCCCh
Q 048834 445 RVKIAEELALNELESRLIRLF--QSKRYLIVLDDVHLP 480 (1108)
Q Consensus 445 ~~~~~~~~~~~~l~~~l~~~l--~~k~~llvlDdv~~~ 480 (1108)
..........+...+++.. .++++++++|++...
T Consensus 249 --~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 249 --GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred --CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000000111112222222 246899999998763
No 400
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.63 E-value=0.54 Score=52.99 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=63.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC-CCHHHHHHHHHHHhCCCch----------hHHHHhhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR-LDKRELAINILNQFAPTDV----------ELEEKLLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~-~~~~~l~~~i~~~~~~~~~----------~~~~~~~~~ 256 (1108)
..++|+|..|.|||||++.+....+ -+..+...+.+. ..+.+...+.+..-..... .........
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~----~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAK----ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCC----CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 4589999999999999999986432 122333334443 5666666655544221110 000001111
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCChhh-HhHh---hhhCCCCCCCcEEEEEecchhhhhhc
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTPDI-WEII---KFLFPNSLSGSRVILSFREADAAMHR 312 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~~~-~~~l---~~~~~~~~~GSrIiiTTR~~~Va~~~ 312 (1108)
....+.+++ ++|.+||++||+-..-+ ...+ .+..+. .|.-..+.|....++.+.
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~--~G~~~~~~s~l~~L~ERa 292 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPI--GGKTLLMESYMKKLLERS 292 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCC--CCeeeeeeccchhHHHHh
Confidence 222333444 47999999999986433 2222 222332 255555655555555444
No 401
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.63 E-value=0.26 Score=55.62 Aligned_cols=89 Identities=13% Similarity=0.075 Sum_probs=49.9
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------h--HHHHhhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------E--LEEKLLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~--~~~~~~~~ 256 (1108)
..++|+|..|+|||||++.+.+.. ..+..++..+.... ...++...+...-..... + ..-.....
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 459999999999999999997532 22444555555443 445555555443211110 0 00000001
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.++. ++|.|||++||+-..
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEecchhHH
Confidence 112234444 589999999998754
No 402
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.061 Score=59.80 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
+.+.++|+||+.. ....+.|...+..-..++.+|++|.+.+
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 5566788999985 4557777777765455677787777654
No 403
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.61 E-value=0.15 Score=54.98 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=34.2
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR 232 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~ 232 (1108)
+.-+++-|+|.+|+||||||-++. ......-...+|+..-..++..
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~--~~~~~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAI--AEAQKLGGTVAFIDAEHALDPV 98 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH--HHHHHcCCCEEEECccccHHHH
Confidence 456789999999999999998876 3344445567788876666643
No 404
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.58 E-value=2.3 Score=49.05 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=91.6
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccc-------cc-----------CceeEEEEe
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIR-------QN-----------FEYHAWANV 424 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~-------~~-----------f~~~~w~~v 424 (1108)
.+++|-+.....+.+.+.. +..+.++.++|..|+|||++|+.+.....-. .+ .....|..+
T Consensus 17 ~diiGq~~~v~~L~~~i~~-~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF-NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEe
Confidence 3557877777777777654 3446788899999999999998885431100 00 000112221
Q ss_pred ccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEE
Q 048834 425 DVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRV 501 (1108)
Q Consensus 425 ~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~i 501 (1108)
........++ .+.+ ...+.. -..+.+-++|+|+++. ....+.+...+. +.. ....+
T Consensus 96 ~g~~~~gid~-ir~i------------------~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~-~~~~~ 154 (451)
T PRK06305 96 DGASHRGIED-IRQI------------------NETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPP-QHVKF 154 (451)
T ss_pred eccccCCHHH-HHHH------------------HHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCC-CCceE
Confidence 1111111111 1111 111110 1125667889999764 334455555544 222 34555
Q ss_pred EEEc-CchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 502 ILLT-REAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 502 ivtt-r~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
++++ +...+..........+++..++.++....+...+.... -....+....++..++|-.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdl 216 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSL 216 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCH
Confidence 5444 44444444444556889999999988777665432211 0111223445666666643
No 405
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.56 E-value=2.7 Score=48.54 Aligned_cols=178 Identities=13% Similarity=0.116 Sum_probs=92.2
Q ss_pred HHHHHHhCCCCc-eEEEEEEcCCCChHHHHHHHHhcCccccccC--ceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhh
Q 048834 374 RLAQLTMSSSSK-YFLISVVGVAGSGKTTLVETIYNSSYIRQNF--EYHAWANVDVSHDFDLRKVFINILEQVTRVKIAE 450 (1108)
Q Consensus 374 ~i~~~l~~~~~~-~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f--~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~ 450 (1108)
..++.+.+..+. ...+.++|..|+|||.|++++.+. +.... ....++. ..++...+...+....
T Consensus 128 ~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~--l~~~~~~~~v~yv~--------~~~f~~~~~~~l~~~~--- 194 (450)
T PRK14087 128 IAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNY--IESNFSDLKVSYMS--------GDEFARKAVDILQKTH--- 194 (450)
T ss_pred HHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEE--------HHHHHHHHHHHHHHhh---
Confidence 334444444332 245789999999999999998775 22211 1223333 2344455544443210
Q ss_pred hhhHHHHHHHHHHHhcCCceEEEEeCCCCh---hhH-HHHHHHhCCCCCCCCCEEEEEcCchH-HHHhcC-------CCc
Q 048834 451 ELALNELESRLIRLFQSKRYLIVLDDVHLP---GAW-YELQRIFSPNTSSSGSRVILLTREAF-VARAFS-------PSI 518 (1108)
Q Consensus 451 ~~~~~~l~~~l~~~l~~k~~llvlDdv~~~---~~~-~~l~~~~~~~~~~~~s~iivttr~~~-v~~~~~-------~~~ 518 (1108)
+. ...+++.+. ..-++++||+... ..+ +.+...+.... ..+..+++|+.... ...... ...
T Consensus 195 ----~~-~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~-~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G 267 (450)
T PRK14087 195 ----KE-IEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI-ENDKQLFFSSDKSPELLNGFDNRLITRFNMG 267 (450)
T ss_pred ----hH-HHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHH-HcCCcEEEECCCCHHHHhhccHHHHHHHhCC
Confidence 11 122333333 3347888998642 222 33333332111 24556777755321 111111 123
Q ss_pred ceEecCCCChhhhHHHHhhhhcCcCC-chHHHHHHHHHHHHcCCchhHHHHHHH
Q 048834 519 ILLQLRPLNVDESWELFLKKVGREKR-ASELLNLKEKIWKKCGGLPLAICVLGG 571 (1108)
Q Consensus 519 ~~~~~~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~i~~~~~glPlal~~~~~ 571 (1108)
-+..+.+++.++...++.+.+..... ..--.+...-++..+.|-+..+..+..
T Consensus 268 l~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 268 LSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred ceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 56778999999999988776643211 012234445566777777766555443
No 406
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=0.41 Score=53.28 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=102.5
Q ss_pred CCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcccccc-----C-------------ceeEEE
Q 048834 361 PEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQN-----F-------------EYHAWA 422 (1108)
Q Consensus 361 ~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~-----f-------------~~~~w~ 422 (1108)
.-.+++|-+...+.+.+.+... ..|-++-+.|..|+||+++|..+.....-... + ..+.++
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i 95 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI 95 (365)
T ss_pred chhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH
Confidence 3456788777777777766553 45778999999999999998777443100000 0 000000
Q ss_pred EeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc-----CCceEEEEeCCCC--hhhHHHHHHHhCCCCC
Q 048834 423 NVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQ-----SKRYLIVLDDVHL--PGAWYELQRIFSPNTS 495 (1108)
Q Consensus 423 ~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~-----~k~~llvlDdv~~--~~~~~~l~~~~~~~~~ 495 (1108)
. .+.-+|+..+.... .. .+.........++ +..+.+.+. +...++++|+++. ......+...+. ..
T Consensus 96 ~--~~~HPDl~~i~~~~-~~-~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE--ep 168 (365)
T PRK07471 96 A--AGAHGGLLTLERSW-NE-KGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE--EP 168 (365)
T ss_pred H--ccCCCCeEEEeccc-cc-ccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh--cC
Confidence 0 00000000000000 00 0000000112222 223333332 4567899999864 445555555554 11
Q ss_pred CCCCEEEEEcCc-hHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHH
Q 048834 496 SSGSRVILLTRE-AFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVL 569 (1108)
Q Consensus 496 ~~~s~iivttr~-~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~ 569 (1108)
..++.++++|.. ..+.....+....+.+.+++.++..+.+........ . .....++..++|.|.....+
T Consensus 169 p~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~--~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 169 PARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP--D---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC--H---HHHHHHHHHcCCCHHHHHHH
Confidence 134555555554 455555556678899999999999988876532211 1 11145678889999755443
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.55 E-value=0.2 Score=57.19 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.8
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-.+|+|+|.+|+||||++..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLA 371 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLA 371 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999988776
No 408
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.55 E-value=0.043 Score=54.50 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=19.0
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
+|+|.|..|+||||||+.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~ 20 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLS 20 (179)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 409
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.54 E-value=0.3 Score=49.49 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=58.0
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCch-hHH----HHhhcchHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDV-ELE----EKLLESPQTVV 261 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~-~~~----~~~~~~l~~~l 261 (1108)
-+++.|.|..|.||||+.+.+.--. +-. .+-+++... +..-.+...|+..+...+. ... .....++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la--~~G~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMA--QIGCFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHH--HcCCCcchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4679999999999999988886321 111 111222110 0000112222222222110 000 00011121112
Q ss_pred HHHccCCeEEEEEcCCCC---hhh----HhHhhhhCCCCCCCcEEEEEecchhhhhhccc
Q 048834 262 HNYLIHKRYLVILTDVRT---PDI----WEIIKFLFPNSLSGSRVILSFREADAAMHRNL 314 (1108)
Q Consensus 262 ~~~l~~kr~LlVLDDVw~---~~~----~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~ 314 (1108)
+ +..++-|++||..-. ..+ ...+...+. ..|+.+|+||.+.+++.....
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhhc
Confidence 2 234667999999843 222 122222222 238899999999999876543
No 410
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.53 E-value=2.4 Score=46.57 Aligned_cols=95 Identities=12% Similarity=0.138 Sum_probs=57.9
Q ss_pred CCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCc-hHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcC
Q 048834 467 SKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTRE-AFVARAFSPSIILLQLRPLNVDESWELFLKKVGREK 543 (1108)
Q Consensus 467 ~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~-~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~ 543 (1108)
++.-++|+|+++. ....+.+...+.+ .. .++.++++|.. ..+.....+....+.+.+++.+++.+.+...... .
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEE-Pp-~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~ 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEE-PS-GDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhC-CC-CCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C
Confidence 3455567799875 5556666665542 22 45555555554 4555566666788999999999988887654311 1
Q ss_pred CchHHHHHHHHHHHHcCCchhHHHH
Q 048834 544 RASELLNLKEKIWKKCGGLPLAICV 568 (1108)
Q Consensus 544 ~~~~~~~~~~~i~~~~~glPlal~~ 568 (1108)
.......++..+.|.|.....
T Consensus 182 ----~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 182 ----DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred ----ChHHHHHHHHHcCCCHHHHHH
Confidence 112233556788888864433
No 411
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.51 E-value=0.055 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=21.0
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+++|+|..|+|||||++.+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHH
Confidence 45689999999999999999998
No 412
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.50 E-value=0.26 Score=55.48 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=49.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHH--hhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEK--LLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~--~~~~ 256 (1108)
..++|+|..|.|||||++.+.+..+ -+..+++.+.+.. .+.++..+....=..+.. +.... ..-.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~ 213 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF 213 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 4599999999999999999885422 2445566666554 344444444433110100 00000 0001
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .++.+|+++||+-..
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 214 YATAIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 112233444 589999999998653
No 413
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.47 E-value=1.8 Score=45.23 Aligned_cols=188 Identities=20% Similarity=0.181 Sum_probs=93.8
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEE-EEeccCCCcCHHHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAW-ANVDVSHDFDLRKVFINILE 441 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w-~~v~~s~~~~~~~l~~~il~ 441 (1108)
.+++|-+..+..+.+.+.. +..+....+|+.|.|||+.|.++.....-.+.|..... .+ +|..-... +.+.-.
T Consensus 36 de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln--aSderGis-vvr~Ki- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN--ASDERGIS-VVREKI- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc--cccccccc-chhhhh-
Confidence 3456777777777777777 33457779999999999988777654222222322211 11 11111100 000000
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHhc--CCc-eEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEE-cCchHHHHhcC
Q 048834 442 QVTRVKIAEELALNELESRLIRLFQ--SKR-YLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILL-TREAFVARAFS 515 (1108)
Q Consensus 442 ~l~~~~~~~~~~~~~l~~~l~~~l~--~k~-~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivt-tr~~~v~~~~~ 515 (1108)
-++..+-....+-.. -.+ -.+|+|+.+. .+.|..++.... .....++.++. +--..+.....
T Consensus 110 ----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE--~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 110 ----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME--DFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh--ccccceEEEEEcCChhhCChHHH
Confidence 011111111110000 112 4788899876 788988888765 23355554443 33333333333
Q ss_pred CCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCC-chhHHHHH
Q 048834 516 PSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGG-LPLAICVL 569 (1108)
Q Consensus 516 ~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPlal~~~ 569 (1108)
+...-+....|..++...-+...+..+. -+-..+....|++.++| +-.|+..+
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEG-VDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 3445677788888776666655442222 11122233445666655 34444433
No 414
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.46 E-value=0.15 Score=63.56 Aligned_cols=23 Identities=13% Similarity=0.039 Sum_probs=19.5
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...++-++|+.|+|||.||+++.
T Consensus 595 p~~~~lf~Gp~GvGKT~lA~~La 617 (852)
T TIGR03345 595 PLGVFLLVGPSGVGKTETALALA 617 (852)
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45578899999999999998775
No 415
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.44 E-value=0.26 Score=51.59 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=38.1
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHh-cCCcccccCCcceeEEEcCCCCCHHHHHHH
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKI-YSCDDIKNHFQCRAWFLVPPRLDKRELAIN 237 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v-~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~ 237 (1108)
+.+.++|..+=+.-+++-|.|.+|.||||+|..+ |+- . ..-+..+|++... +..++.+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~--~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG--L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH--H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 3344445444456678999999999999999664 422 2 3345677887654 44455544
No 416
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.086 Score=54.79 Aligned_cols=80 Identities=9% Similarity=0.084 Sum_probs=45.9
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccc--cCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIK--NHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~--~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
-++|-++|++|.|||||.++++++-.++ ..+-....+.++ -..+..+-+++-++- +..+-+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsESgKl--------V~kmF~kI~EL 244 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSESGKL--------VAKMFQKIQEL 244 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhhhhhH--------HHHHHHHHHHH
Confidence 4678899999999999999999764333 344444444432 234444444442211 22233344555
Q ss_pred ccCC--eEEEEEcCCC
Q 048834 265 LIHK--RYLVILTDVR 278 (1108)
Q Consensus 265 l~~k--r~LlVLDDVw 278 (1108)
+.++ =+++.+|.|-
T Consensus 245 v~d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 245 VEDRGNLVFVLIDEVE 260 (423)
T ss_pred HhCCCcEEEEEeHHHH
Confidence 5444 3556677774
No 417
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.40 E-value=0.056 Score=57.56 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=21.0
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...-||||.|..|+||||+|+.+-
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998774
No 418
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.38 E-value=0.12 Score=48.76 Aligned_cols=23 Identities=4% Similarity=0.033 Sum_probs=19.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.-|-|+|-.|.||+++|+.++..
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHT
T ss_pred CcEEEEcCCCCCHHHHHHHHHhh
Confidence 33789999999999999999954
No 419
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.38 E-value=0.21 Score=56.22 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=52.8
Q ss_pred EeEEccCCCChhhHHHHhcCCcccc-cCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCc-h-------hHHHHhh--cch
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIK-NHFQCRAWFLVPPRL-DKRELAINILNQFAPTD-V-------ELEEKLL--ESP 257 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~-~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~-~-------~~~~~~~--~~l 257 (1108)
++|.|..|+|||||+..+... .. .+=+.++|+-+.+.. .+.++..+++..=..+. . +...... -..
T Consensus 146 ~~If~~~G~GKt~L~~~~~~~--~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~ 223 (461)
T TIGR01039 146 IGLFGGAGVGKTVLIQELINN--IAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT 223 (461)
T ss_pred EEeecCCCCChHHHHHHHHHH--HHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 899999999999999887632 22 122367788777664 44566666653311110 0 0000001 112
Q ss_pred HHHHHHHc---cCCeEEEEEcCCCChh
Q 048834 258 QTVVHNYL---IHKRYLVILTDVRTPD 281 (1108)
Q Consensus 258 ~~~l~~~l---~~kr~LlVLDDVw~~~ 281 (1108)
...+.+++ +++.||||+||+-..-
T Consensus 224 a~tiAEyfrd~~G~~VLll~DslTR~A 250 (461)
T TIGR01039 224 GLTMAEYFRDEQGQDVLLFIDNIFRFT 250 (461)
T ss_pred HHHHHHHHHHhcCCeeEEEecchhHHH
Confidence 23345565 4689999999997643
No 420
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.36 E-value=0.048 Score=52.34 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=18.8
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
||.|+|..|+||||+|+.+-
T Consensus 1 ~I~i~G~~GsGKst~a~~la 20 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLA 20 (147)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999887
No 421
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.35 E-value=0.21 Score=56.10 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=20.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..++|+|..|+|||||++.+.+.
T Consensus 176 qri~I~G~sG~GKTTLL~~Ia~~ 198 (455)
T PRK07960 176 QRMGLFAGSGVGKSVLLGMMARY 198 (455)
T ss_pred cEEEEECCCCCCccHHHHHHhCC
Confidence 45999999999999999999854
No 422
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.34 E-value=0.052 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=19.7
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.++.|+|+.|+||||+|+.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999874
No 423
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.32 E-value=0.53 Score=46.01 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=17.8
Q ss_pred EeEEccCCCChhhHHHHhcC
Q 048834 190 IPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~ 209 (1108)
|.|+|+.|+||||+|+.+-+
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999874
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.32 E-value=5.8 Score=42.13 Aligned_cols=198 Identities=20% Similarity=0.248 Sum_probs=109.4
Q ss_pred CceeeehHH---HHHHHHHHhCC-CCceEEEEEEcCCCChHHHHHHHHhcCccccccCc--eeEEEEeccCCCcCHHHHH
Q 048834 363 AELVGLKDQ---LLRLAQLTMSS-SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE--YHAWANVDVSHDFDLRKVF 436 (1108)
Q Consensus 363 ~~~~g~~~~---l~~i~~~l~~~-~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~--~~~w~~v~~s~~~~~~~l~ 436 (1108)
+..+|.+.. ++.+...+..- ...+.-+-++|.++.|||++++++....-....-+ .+--+.++.-...+...++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 344555433 44444544433 44567789999999999999999865421111111 1112223366778899999
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHHHHhcC-CceEEEEeCCCCh-----hhHHHHH---HHhCCCCCCCCCEEEEEcCc
Q 048834 437 INILEQVTRVKIAEELALNELESRLIRLFQS-KRYLIVLDDVHLP-----GAWYELQ---RIFSPNTSSSGSRVILLTRE 507 (1108)
Q Consensus 437 ~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~-k~~llvlDdv~~~-----~~~~~l~---~~~~~~~~~~~s~iivttr~ 507 (1108)
..|+.+++...... .+...+.....+.+.. +--++|+|++.+. .+-..+. ..+. ....-+-|.+.|+.
T Consensus 114 ~~IL~~lgaP~~~~-~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~--NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 114 SAILEALGAPYRPR-DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG--NELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHhCcccCCC-CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh--hccCCCeEEeccHH
Confidence 99999998643322 3344444444455543 4458899998761 1111111 1222 22234556666655
Q ss_pred hHHHHh----cCCCcceEecCCCChhhhHHHHhhhhc-----CcCCchHHHHHHHHHHHHcCCch
Q 048834 508 AFVARA----FSPSIILLQLRPLNVDESWELFLKKVG-----REKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 508 ~~v~~~----~~~~~~~~~~~~L~~~~~~~lf~~~~~-----~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
..-+.. +.+....+.+..|..++-..-|...+. ...++-....++..+...++|..
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 443322 223445677777776654444433321 12223344667778888888765
No 425
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.30 E-value=3.1 Score=48.52 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=94.8
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccc--cc----c------------CceeEEEEe
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYI--RQ----N------------FEYHAWANV 424 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~--~~----~------------f~~~~w~~v 424 (1108)
.+++|-+...+.+...+.. +..+.++.++|..|+|||++|+.+.....- .. + +.. .+..+
T Consensus 14 deiiGqe~v~~~L~~~I~~-grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~-dv~el 91 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN-NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI-DIIEM 91 (535)
T ss_pred HHccCcHHHHHHHHHHHHc-CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC-eEEEe
Confidence 3457877777777777654 446778889999999999999877543100 00 0 000 01110
Q ss_pred ccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH----HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCC
Q 048834 425 DVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR----LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSG 498 (1108)
Q Consensus 425 ~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~----~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~ 498 (1108)
..+..... +++...+.. -..++.-++|+|++.. ....+.+...+.. . ...
T Consensus 92 daas~~gI----------------------d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-p-p~~ 147 (535)
T PRK08451 92 DAASNRGI----------------------DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-P-PSY 147 (535)
T ss_pred ccccccCH----------------------HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-c-CCc
Confidence 11111111 111111111 0124566889999875 4455666665541 1 245
Q ss_pred CEEEEEcCc-hHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhH
Q 048834 499 SRVILLTRE-AFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLA 565 (1108)
Q Consensus 499 s~iivttr~-~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla 565 (1108)
+++++++.+ ..+..........+++.+++.++....+...+...... .-......++..++|-+..
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~ 214 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRD 214 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHH
Confidence 555555543 33333344456788999999998877776544322211 1123444566677776543
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.26 E-value=0.2 Score=51.27 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.8
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+++.|+|..|.||||+.+.+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHH
Confidence 4779999999999999988876
No 427
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.25 E-value=0.26 Score=56.16 Aligned_cols=93 Identities=9% Similarity=0.025 Sum_probs=55.0
Q ss_pred EeEEccCCCChhhHH-HHhcCCcccccCCcc-eeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHhh--cc
Q 048834 190 IPVVDVAGSAETPEL-WKIYSCDDIKNHFQC-RAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKLL--ES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla-~~v~~~~~~~~~F~~-~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~~--~~ 256 (1108)
++|.|-.|+|||||| ..|.|. ..-+. ++|+-+.+.. .+.++..++...=..+.. +...... --
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~q----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~ 240 (497)
T TIGR03324 165 ELILGDRQTGKTAIAIDTILNQ----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPY 240 (497)
T ss_pred EEeecCCCCCHHHHHHHHHHHh----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHH
Confidence 899999999999996 677764 23465 6788888775 455666665544111100 0000000 00
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCChhh-HhHh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTPDI-WEII 286 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~~~-~~~l 286 (1108)
....+.+++ ++|.+|||+||+...-+ +..+
T Consensus 241 ~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REi 273 (497)
T TIGR03324 241 AATSIGEHFMEQGRDVLIVYDDLTQHARAYREL 273 (497)
T ss_pred HHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHH
Confidence 112244444 68999999999986433 4444
No 428
>PRK06217 hypothetical protein; Validated
Probab=93.23 E-value=0.052 Score=54.34 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=19.6
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.|.|.|++|+||||+|+.+-..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999999843
No 429
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.22 E-value=0.2 Score=54.91 Aligned_cols=68 Identities=7% Similarity=0.036 Sum_probs=44.9
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCC----cceeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF----QCRAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F----~~~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
.+..+|..+=..-.++-|+|.+|+||||||..++-........ ...+|+.....|...++. +|++.+.
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 3344444444556779999999999999998766221111111 257899999999988865 4555543
No 430
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=93.20 E-value=0.24 Score=55.82 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..++|+|..|+|||||++.+.+.
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhcc
Confidence 45999999999999999999854
No 431
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.18 E-value=0.48 Score=52.46 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=25.1
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEec
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFR 304 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR 304 (1108)
.+++-++|+|++.. ....+.|...+........+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 35666888999985 4557777776655444556555543
No 432
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.18 E-value=2.3 Score=50.88 Aligned_cols=184 Identities=15% Similarity=0.158 Sum_probs=94.0
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccC------c-----------eeEEEEec
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNF------E-----------YHAWANVD 425 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f------~-----------~~~w~~v~ 425 (1108)
.+++|-+...+.+.+.+.. +..+.++.++|..|+|||++|+.+.....-.... . ...|+.++
T Consensus 16 ~~iiGq~~v~~~L~~~i~~-~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid 94 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT-GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEID 94 (576)
T ss_pred HHccCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeee
Confidence 3557888777777777654 3456778899999999999998875542100000 0 00111111
Q ss_pred cCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH-hcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEE
Q 048834 426 VSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRL-FQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVI 502 (1108)
Q Consensus 426 ~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~-l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ii 502 (1108)
.......++ ..++...+... ..++.-++|+|+++. ....+.+...+. ... ..+.+|
T Consensus 95 ~~s~~~v~~-------------------ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp-~~~~fI 153 (576)
T PRK14965 95 GASNTGVDD-------------------IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPP-PHVKFI 153 (576)
T ss_pred ccCccCHHH-------------------HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCC-CCeEEE
Confidence 111111111 11111111110 124556788999875 344555655554 111 344444
Q ss_pred -EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCc-hhHHHHH
Q 048834 503 -LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGL-PLAICVL 569 (1108)
Q Consensus 503 -vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-Plal~~~ 569 (1108)
+|+....+..........+++..++.++....+...+...... .-......+++.++|- -.++..+
T Consensus 154 l~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 154 FATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred EEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555555655555556677888888887776665443222111 1122333455566653 3344443
No 433
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.17 E-value=0.23 Score=52.37 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=43.2
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCC----cceeEEEcCCCCCHHHHHHHHHHHh
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF----QCRAWFLVPPRLDKRELAINILNQF 242 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F----~~~~~~~~s~~~~~~~l~~~i~~~~ 242 (1108)
.+.+.|..+=..-.|.-|+|.+|+|||.|+-.+.=...+.... ...+|++....|...++. +|++..
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 3444443333445679999999999999997665212222221 247799988899998876 466654
No 434
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.16 E-value=0.5 Score=54.45 Aligned_cols=37 Identities=11% Similarity=0.002 Sum_probs=24.6
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhc
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.-+..+.+++..+. -...+-++|..|+||||+|+.+-
T Consensus 24 ~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 24 AVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred HHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHH
Confidence 33445555554332 22447789999999999997774
No 435
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.11 E-value=0.077 Score=61.03 Aligned_cols=32 Identities=16% Similarity=0.177 Sum_probs=26.0
Q ss_pred HhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 178 ELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 178 ~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+++..+.+...+|||.|..|.||||||+.+..
T Consensus 56 qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 56 QLLAQKNDGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred HHHHhcCCCeEEEEEECCCCCcHHHHHHHHHh
Confidence 33444556778999999999999999999974
No 436
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.08 E-value=0.061 Score=53.78 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=20.3
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
++|+|+|+.|+||||||+.+.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999985
No 437
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.08 E-value=0.062 Score=50.91 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=18.1
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|+|.|.+|+||||.++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 48999999999999998875
No 438
>PRK06696 uridine kinase; Validated
Probab=93.01 E-value=0.12 Score=53.54 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=35.7
Q ss_pred ehHHHHHHHHHHhCC-CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 368 LKDQLLRLAQLTMSS-SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 368 ~~~~l~~i~~~l~~~-~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
|...+++|+..+.+. .+.|.+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 566788888888764 667999999999999999999998765
No 439
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.98 E-value=0.074 Score=54.27 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=25.5
Q ss_pred hhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 179 LILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 179 ~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
|+.......++|.|+|..|+|||||++.+.+
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4444556778899999999999999999974
No 440
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.97 E-value=0.73 Score=54.49 Aligned_cols=38 Identities=16% Similarity=-0.028 Sum_probs=26.5
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-+..+..++..+. -...+-++|..|+||||+|+.+.+
T Consensus 23 ~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 23 FVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred HHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455666665432 233577999999999999988864
No 441
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.94 E-value=0.62 Score=55.89 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEE-Eecchhhh
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVIL-SFREADAA 309 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIii-TTR~~~Va 309 (1108)
+++-++|+|++.. ...+++|+..+........+|+ ||+-..+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 5555778999874 4568888877765445566554 44444443
No 442
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.92 E-value=0.25 Score=54.06 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=45.1
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccC----CcceeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNH----FQCRAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~----F~~~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
.+..+|..+=..-+++-|+|.+|+|||||+..+.=....... -...+|+..-..|...++.+ +++.+.
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 344445444455677889999999999999777511112111 13578999999999998765 455544
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.92 E-value=0.29 Score=50.22 Aligned_cols=110 Identities=9% Similarity=-0.010 Sum_probs=58.0
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcc-------------eeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHh
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQC-------------RAWFLVPPRLDKRELAINILNQFAPTDVELEEKL 253 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~-------------~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~ 253 (1108)
-+++.|.|..|.||||+.+.+... .+..+=.+ .++..+....+...-+..... .
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~-~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~------------e 97 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALI-TIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMV------------E 97 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH-HHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHH------------H
Confidence 456899999999999998888631 11111112 222233222222111111111 1
Q ss_pred hcchHHHHHHHccCCeEEEEEcCCCCh----h--h-HhHhhhhCCCCCCCcEEEEEecchhhhhhc
Q 048834 254 LESPQTVVHNYLIHKRYLVILTDVRTP----D--I-WEIIKFLFPNSLSGSRVILSFREADAAMHR 312 (1108)
Q Consensus 254 ~~~l~~~l~~~l~~kr~LlVLDDVw~~----~--~-~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~ 312 (1108)
..++...++. ..++-|++||..-.. + . -..+...+.. ..++.+|+||.+.+++...
T Consensus 98 ~~~~~~il~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 98 LSETSHILSN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 2233333332 246899999997432 1 1 1122223322 2589999999999987644
No 444
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.92 E-value=0.065 Score=53.21 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|.|+|++|+||||+|+++..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999984
No 445
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.91 E-value=0.25 Score=61.86 Aligned_cols=96 Identities=9% Similarity=0.122 Sum_probs=47.2
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
+..+-++|+.|+|||+||+.+-+ .+-..-...+-+..|.-.+...+.+ + ++....... .++ ...+.+.++
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~~~-l---~g~~~gyvg---~~~-~~~l~~~~~ 608 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTVSK-L---IGSPPGYVG---YNE-GGQLTEAVR 608 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccHHH-h---cCCCCcccC---cCc-cchHHHHHH
Confidence 34566899999999999988752 1211111222333333222111111 1 111100000 011 112445555
Q ss_pred CCe-EEEEEcCCCC--hhhHhHhhhhCCC
Q 048834 267 HKR-YLVILTDVRT--PDIWEIIKFLFPN 292 (1108)
Q Consensus 267 ~kr-~LlVLDDVw~--~~~~~~l~~~~~~ 292 (1108)
.+. -+|+||+|.. .+.++.|...+..
T Consensus 609 ~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 609 KKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred hCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 555 4788999985 4557777766654
No 446
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.89 E-value=0.071 Score=52.99 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=20.3
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-..|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 34699999999999999999983
No 447
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.87 E-value=0.069 Score=53.68 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.3
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.++||+|..|+||||||+.+-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHh
Confidence 349999999999999999996
No 448
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.85 E-value=0.087 Score=57.56 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=19.1
Q ss_pred CceEeEEccCCCChhh-HHHHhc
Q 048834 187 PLHIPVVDVAGSAETP-ELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTt-la~~v~ 208 (1108)
-+||.+||+.|||||| ||+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 7899999999999998 777654
No 449
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=92.85 E-value=0.21 Score=49.33 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=20.2
Q ss_pred CCCCCceEeEEccCCCChhhHHHHhc
Q 048834 183 DYPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 183 ~~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+.+..-+-|.||+|+||||-+..+.
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHH
Confidence 34567779999999999999665554
No 450
>PHA00729 NTP-binding motif containing protein
Probab=92.84 E-value=0.065 Score=54.25 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=20.1
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..-|.|.|.+|+||||||..+-+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 34588999999999999999974
No 451
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.81 E-value=0.086 Score=50.70 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=19.4
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
||+|+|+.|+|||||+..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 452
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.80 E-value=0.43 Score=50.47 Aligned_cols=20 Identities=10% Similarity=0.114 Sum_probs=18.3
Q ss_pred EeEEccCCCChhhHHHHhcC
Q 048834 190 IPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~ 209 (1108)
|-++|++|+||||+|+.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 453
>PRK09099 type III secretion system ATPase; Provisional
Probab=92.79 E-value=0.33 Score=54.87 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=49.1
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------h--HHHHhhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------E--LEEKLLE 255 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~--~~~~~~~ 255 (1108)
=..++|.|..|+|||||++.+..... -+..+++-+.+.. .+.++...+...-..... + ......-
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 34599999999999999999985422 2334444444443 444444444433111100 0 0000000
Q ss_pred chHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 256 SPQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 256 ~l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
.....+.+++ ++|.||+++||+-..
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1112234444 588999999998754
No 454
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.79 E-value=0.24 Score=54.93 Aligned_cols=100 Identities=10% Similarity=0.057 Sum_probs=57.8
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
....+=|||..|.|||-|++++.|. ...+......+.++. .....+++..+..+ -....++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~s----e~f~~~~v~a~~~~-----------~~~~Fk~~y 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTS----EDFTNDFVKALRDN-----------EMEKFKEKY 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccH----HHHHHHHHHHHHhh-----------hHHHHHHhh
Confidence 4566999999999999999999964 555555444444432 22333333333221 122255555
Q ss_pred cCCeEEEEEcCCCC---hhhH-hHhhhhCCC-CCCCcEEEEEec
Q 048834 266 IHKRYLVILTDVRT---PDIW-EIIKFLFPN-SLSGSRVILSFR 304 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~---~~~~-~~l~~~~~~-~~~GSrIiiTTR 304 (1108)
.-=++++||++- .+.| +.+.-.+.. ...|-.||+|++
T Consensus 175 --~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsd 216 (408)
T COG0593 175 --SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSD 216 (408)
T ss_pred --ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 333778899985 2234 233333321 234558998886
No 455
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.79 E-value=0.076 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.136 Sum_probs=19.6
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..||.|+|.+|+||||+.+.+-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~ 25 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIAL 25 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHH
Confidence 5789999999999999988776
No 456
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.77 E-value=0.062 Score=48.09 Aligned_cols=20 Identities=10% Similarity=0.038 Sum_probs=17.7
Q ss_pred EeEEccCCCChhhHHHHhcC
Q 048834 190 IPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~ 209 (1108)
|-|+|.+|+|||++|+.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999874
No 457
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.76 E-value=0.45 Score=57.35 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=19.7
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.||+++|..|+||||.+..+..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 46899999999999998777763
No 458
>COG3903 Predicted ATPase [General function prediction only]
Probab=92.74 E-value=0.031 Score=60.53 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=70.4
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHH-hCCCchhHHHHhhcchHHHHHHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQ-FAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~-~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
..+.+.++|.|||||||++-.+- + +..-|..-+|...-.+.....+.--++.. +...... . +.-...+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a--~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~-g----~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAA--H-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP-G----DSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhH--h-HhhhcccceeeeeccccCchhHhHHHHHhhccccccc-c----hHHHHHHHHH
Confidence 46779999999999999998887 4 67888765655554454444444444333 3322211 0 1122346677
Q ss_pred ccCCeEEEEEcCCCCh-hhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 265 LIHKRYLVILTDVRTP-DIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~~-~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
+.++|.++|+|+--+. ++=-.+...+..+.+.-+|+.|+|.-
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~ 127 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREA 127 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhh
Confidence 8899999999985442 22233333444455567888888854
No 459
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.73 E-value=0.083 Score=53.62 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=21.7
Q ss_pred CCCceEeEEccCCCChhhHHHHhcC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..-.+|+|+|+.|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999973
No 460
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.71 E-value=0.72 Score=50.59 Aligned_cols=41 Identities=2% Similarity=0.053 Sum_probs=28.3
Q ss_pred cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 266 IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
.+.|++ |+|++.. ....++|...+..-..++.+|+||.+.+
T Consensus 105 ~~~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~ 147 (328)
T PRK05707 105 GGRKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPS 147 (328)
T ss_pred CCCeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChh
Confidence 345665 5699985 5567888877765556788887777653
No 461
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.70 E-value=0.066 Score=50.46 Aligned_cols=38 Identities=16% Similarity=0.125 Sum_probs=25.4
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccc-cCCcceeEEEcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIK-NHFQCRAWFLVPP 227 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~-~~F~~~~~~~~s~ 227 (1108)
.+|+|+|.-|+|||||++.+.|. .. ..+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~--l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE--LKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhHcCCceEEEEEccC
Confidence 37999999999999999999854 33 3444444544433
No 462
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=5.7 Score=46.28 Aligned_cols=176 Identities=13% Similarity=0.103 Sum_probs=89.7
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccc---cc------c----------CceeEEEEe
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYI---RQ------N----------FEYHAWANV 424 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~---~~------~----------f~~~~w~~v 424 (1108)
+++|-+.....+.+.+... ..+.++.++|..|+||||+|+.+.....- .. | +.....+.
T Consensus 17 diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eid- 94 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEID- 94 (486)
T ss_pred HccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEe-
Confidence 4568787788887777653 34567778999999999999887543110 00 0 00000111
Q ss_pred ccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEE
Q 048834 425 DVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRV 501 (1108)
Q Consensus 425 ~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~i 501 (1108)
.+.....+ +...+...+.. -+.+++-++|+|+++. ....+.+...+. ... ....+
T Consensus 95 -aas~~gvd-------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp-~~~v~ 152 (486)
T PRK14953 95 -AASNRGID-------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPP-PRTIF 152 (486)
T ss_pred -CccCCCHH-------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCC-CCeEE
Confidence 11111111 11111111111 1235667899999875 345556655554 111 23444
Q ss_pred E-EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 502 I-LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 502 i-vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
+ .|++...+..........+.+.+++.++....+...+..... ..-.+....++..++|-+.
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr 215 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMR 215 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 4 444444444333334567888899888877776654422111 1111223345556666443
No 463
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.69 E-value=2 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 048834 388 LISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 388 ~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
-+.++|.+|.|||++|+.+...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6889999999999999766543
No 464
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.68 E-value=0.16 Score=49.29 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=59.1
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCC--CCCHHHHHHHHH--HHhCCCchhHHHHhhcchHHHHHH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPP--RLDKRELAINIL--NQFAPTDVELEEKLLESPQTVVHN 263 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~--~~~~~~l~~~i~--~~~~~~~~~~~~~~~~~l~~~l~~ 263 (1108)
.+++|+|..|.|||||++.+.... ......+++.... ..........+. .++.. -+...-.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~---------G~~~r~~l~~ 93 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSG---------GQRQRVALAR 93 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHHhceEEEeeCCH---------HHHHHHHHHH
Confidence 569999999999999999998642 2234444442211 111111111110 00110 0111223555
Q ss_pred HccCCeEEEEEcCCCCh---hhHhHhhhhCCC-CCCCcEEEEEecchhhhhhc
Q 048834 264 YLIHKRYLVILTDVRTP---DIWEIIKFLFPN-SLSGSRVILSFREADAAMHR 312 (1108)
Q Consensus 264 ~l~~kr~LlVLDDVw~~---~~~~~l~~~~~~-~~~GSrIiiTTR~~~Va~~~ 312 (1108)
.+-...=+++||+.... ...+.+...+.. ..+|.-|++||.+.+.+...
T Consensus 94 ~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 94 ALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 56666778899998742 222222222211 12257788888887766543
No 465
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.67 E-value=0.074 Score=52.96 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=17.8
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|+|+|-||+||||+|..+.
T Consensus 2 kIaI~GKGG~GKTtiaalll 21 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLL 21 (255)
T ss_pred eEEEecCCCccHHHHHHHHH
Confidence 49999999999999998754
No 466
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=92.67 E-value=0.43 Score=53.81 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=47.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCH-HHHHHHHHHHhCCCch-------h---HHHHhhcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDK-RELAINILNQFAPTDV-------E---LEEKLLES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~-~~l~~~i~~~~~~~~~-------~---~~~~~~~~ 256 (1108)
..++|+|..|+|||||++.+.... .-+..++..+.+.... .+.....+........ + ...... .
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~~~----~~~v~vi~~iGergrev~e~~~~~l~~~l~~tvvV~atsddsp~~R~~~~-~ 232 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVKGC----LAPIKVVALIGERGREIPEFIEKNLGGDLENTVIVVATSDDSPLMRKYGA-F 232 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc----CCCEEEEEeeCccchhHHHHHHHHhcCcccceEEEEECCCCCHHHhhHHH-H
Confidence 459999999999999999998542 2344555556555433 2332222221000100 0 000000 0
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.++. ++|.|||++||+-..
T Consensus 233 ~a~~iAEyFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 233 CAMSVAEYFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHHHHHHHHcCCCEEEecccchHH
Confidence 112234444 589999999999764
No 467
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.64 E-value=0.39 Score=54.55 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=33.0
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcC-CCCCHHHHHHHHHHHhC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVP-PRLDKRELAINILNQFA 243 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s-~~~~~~~l~~~i~~~~~ 243 (1108)
...+|.++|.+|+||||.|..+.. ..+..--..+.++.. ......+-++.+..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g 150 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG 150 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 467899999999999999988873 233321122233321 12233444555556554
No 468
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.63 E-value=0.078 Score=49.93 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=19.5
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999843
No 469
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.62 E-value=0.076 Score=52.67 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 470
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.61 E-value=0.18 Score=61.52 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=19.9
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+..+-++|+.|+|||++|+.+-.
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~ 510 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45688899999999999998863
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.59 E-value=0.085 Score=46.39 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=19.1
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+++|+|..|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 469999999999999999975
No 472
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.48 E-value=0.42 Score=53.81 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=47.9
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHh--hcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKL--LES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~--~~~ 256 (1108)
..++|+|..|.|||||++.+.+..+ -+..++..+.+.. .+.++..+.+.+-..... +..... .-.
T Consensus 138 qri~I~G~sG~GKTtLl~~i~~~~~----~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~ 213 (413)
T TIGR03497 138 QRVGIFAGSGVGKSTLLGMIARNAK----ADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAF 213 (413)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHH
Confidence 4599999999999999998885422 2333444455443 334444443332111100 000000 001
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .+|.|||++||+-..
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 214 TATAIAEYFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCcHHH
Confidence 112233444 588999999998753
No 473
>PRK13949 shikimate kinase; Provisional
Probab=92.47 E-value=0.077 Score=52.05 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=19.4
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
-|.|+||.|.||||+|+.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998843
No 474
>PRK05439 pantothenate kinase; Provisional
Probab=92.47 E-value=0.14 Score=55.09 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCCceEeEEccCCCChhhHHHHhc
Q 048834 184 YPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 184 ~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
....-||||.|.+|+||||+|+.+.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~ 107 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQ 107 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 4566789999999999999999887
No 475
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=92.46 E-value=1.4 Score=47.19 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCc
Q 048834 176 LAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCD 211 (1108)
Q Consensus 176 ~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~ 211 (1108)
+..-|.+.+.+...|.|+|.+|+||||++..++...
T Consensus 27 ~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 27 LLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred HHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 333334444556678999999999999999999653
No 476
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.46 E-value=0.57 Score=48.43 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=76.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCC-----CcCHHHHHHHHHHHHhhhhh-----hhhhhHHH
Q 048834 387 FLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSH-----DFDLRKVFINILEQVTRVKI-----AEELALNE 456 (1108)
Q Consensus 387 ~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~-----~~~~~~l~~~il~~l~~~~~-----~~~~~~~~ 456 (1108)
..++++|.+|+||||+++.+..- .+-- .+..++. ... .....+...+++...+.... .+..+-.+
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L--~~pt-~G~i~f~--g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL--EEPT-SGEILFE--GKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC--cCCC-CceEEEc--CcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 38899999999999999998654 1111 2223322 111 11122334455555442221 11233333
Q ss_pred HHH-HHHHHhcCCceEEEEeCCCC---hhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEecCCC
Q 048834 457 LES-RLIRLFQSKRYLIVLDDVHL---PGAWYELQRIFSPNTSSSGSRVILLTREAFVARAFSPSIILLQLRPL 526 (1108)
Q Consensus 457 l~~-~l~~~l~~k~~llvlDdv~~---~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~~~L 526 (1108)
.+. .+.+.+.-++-++|.|+.-+ ...-.++...+.......+-..+..+++-.+...+++...++.....
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCce
Confidence 333 47888999999999999543 21112222222211222466778889999999988876666555544
No 477
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.44 E-value=0.28 Score=45.85 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 048834 389 ISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 389 i~i~G~~g~GKT~la~~~~~~ 409 (1108)
|-++|..|+|||++++.++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 468999999999999998876
No 478
>PRK13947 shikimate kinase; Provisional
Probab=92.43 E-value=0.075 Score=52.57 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=18.2
Q ss_pred EeEEccCCCChhhHHHHhc
Q 048834 190 IPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~ 208 (1108)
|.|+||+|+||||+|+.+-
T Consensus 4 I~l~G~~GsGKst~a~~La 22 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVA 22 (171)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 8899999999999999987
No 479
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.39 E-value=0.2 Score=56.41 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=49.1
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHh--hcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKL--LES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~--~~~ 256 (1108)
..++|+|..|+|||||++.+.+..+ -+..+++.+.+.. .+.++..+.+..-..+.. +..... .-.
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 4599999999999999999985422 2333444444433 344455544433211110 000000 001
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ ++|.+||++||+-..
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccchhHH
Confidence 112244444 589999999998653
No 480
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.38 E-value=0.091 Score=49.68 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 46999999999999999999864
No 481
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.36 E-value=0.32 Score=55.28 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=52.9
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCc--ceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHh--hcc
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQ--CRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKL--LES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~--~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~--~~~ 256 (1108)
++|.|-.|+|||||+..+-+.......+. .++++-+.+.. .+.++..+++..=..+.. +..... .--
T Consensus 144 ~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~ 223 (458)
T TIGR01041 144 LPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPR 223 (458)
T ss_pred EEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 89999999999999988886543322221 56677777665 455566655533111110 000000 001
Q ss_pred hHHHHHHHcc---CCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYLI---HKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l~---~kr~LlVLDDVw~~ 280 (1108)
....+.++.+ +|+|||++||+-..
T Consensus 224 ~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 224 MALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 1123455554 78999999998754
No 482
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.35 E-value=0.082 Score=51.22 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=18.0
Q ss_pred EeEEccCCCChhhHHHHhc
Q 048834 190 IPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~ 208 (1108)
|.|+|++|.||||+|+.+.
T Consensus 2 i~l~G~~GsGKstla~~la 20 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLA 20 (154)
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999997
No 483
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.33 E-value=0.3 Score=49.74 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=19.6
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+++|+|..|.||||+.+.|.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 679999999999999999887
No 484
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.32 E-value=0.086 Score=52.84 Aligned_cols=21 Identities=19% Similarity=0.098 Sum_probs=19.1
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|||+|+.|+||||.|+.+-
T Consensus 3 ~iIglTG~igsGKStva~~~~ 23 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILA 23 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 579999999999999999775
No 485
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.31 E-value=0.087 Score=49.11 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=29.9
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPT 245 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~ 245 (1108)
+|.|-|.+|+||||+|+.+-++--. . ++ +.-.+.++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl--~-------~v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL--K-------LV----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC--c-------ee----eccHHHHHHHHHcCCC
Confidence 5899999999999999999744111 0 11 2234667777776554
No 486
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.30 E-value=0.05 Score=49.17 Aligned_cols=27 Identities=15% Similarity=0.179 Sum_probs=18.2
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCc
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQ 218 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~ 218 (1108)
|-|+|.+|+||||+|+.+. ..+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA--~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALA--RSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHH--HHTT--EE
T ss_pred EeeECCCccHHHHHHHHHH--HHcCCcee
Confidence 5689999999999999998 45666664
No 487
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.29 E-value=5 Score=47.65 Aligned_cols=187 Identities=13% Similarity=0.122 Sum_probs=93.6
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCce--e-EE---EEeccCCCcCHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY--H-AW---ANVDVSHDFDLRKVF 436 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~--~-~w---~~v~~s~~~~~~~l~ 436 (1108)
.+++|-+...+.+...+..+ ..+.++.++|..|+|||++|+.+.....-...... + .. ..+.....++...
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~-- 92 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE-- 92 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE--
Confidence 35678888888888887653 45678899999999999999988654211000000 0 00 0000000000000
Q ss_pred HHHHHHHhhhhhhhhhhHHHHHH---HHH-HHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEE-cCchH
Q 048834 437 INILEQVTRVKIAEELALNELES---RLI-RLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILL-TREAF 509 (1108)
Q Consensus 437 ~~il~~l~~~~~~~~~~~~~l~~---~l~-~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivt-tr~~~ 509 (1108)
+.+.. ....+++.. .+. .-+.++.-++|+|++.. ...++.+...+. ... ..+.++++ +....
T Consensus 93 ------idgas---~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp-~~~vfI~~tte~~k 161 (563)
T PRK06647 93 ------IDGAS---NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPP-PYIVFIFATTEVHK 161 (563)
T ss_pred ------ecCcc---cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCC-CCEEEEEecCChHH
Confidence 00000 011111111 111 11245667889999875 445666665554 111 34444444 44444
Q ss_pred HHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchh
Q 048834 510 VARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPL 564 (1108)
Q Consensus 510 v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPl 564 (1108)
+..........++...++.++....+...+..... ..-......++...+|-+.
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVR 215 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 44444445567888888888877766554422111 1112233345556666443
No 488
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.27 E-value=0.08 Score=57.09 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=18.2
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
+.|+|+|-||+||||+|..+-
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA 21 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIA 21 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHH
Confidence 469999999999999887665
No 489
>PRK14974 cell division protein FtsY; Provisional
Probab=92.27 E-value=0.4 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.7
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|.++|+.|+||||++..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 46799999999999999776665
No 490
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.25 E-value=1.6 Score=52.35 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=94.9
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcc---------------------ccccCceeEEE
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSY---------------------IRQNFEYHAWA 422 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~---------------------~~~~f~~~~w~ 422 (1108)
+++|-+...+.+...+.. +..+.++.++|..|+|||++|+.+..... ...+|+....
T Consensus 18 ~viGq~~~~~~L~~~i~~-~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l- 95 (614)
T PRK14971 18 SVVGQEALTTTLKNAIAT-NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL- 95 (614)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe-
Confidence 457877777777777754 34577889999999999998877644310 0011221111
Q ss_pred EeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCC
Q 048834 423 NVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGS 499 (1108)
Q Consensus 423 ~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s 499 (1108)
. .+.....++ ...+...+.. -+.+++-++|+|++.. ...++.+...+. . ....+
T Consensus 96 d--~~~~~~vd~-------------------Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-e-pp~~t 152 (614)
T PRK14971 96 D--AASNNSVDD-------------------IRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-E-PPSYA 152 (614)
T ss_pred c--ccccCCHHH-------------------HHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHh-C-CCCCe
Confidence 1 111111111 1111111110 1234566889998765 445666666554 1 11345
Q ss_pred EEE-EEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 500 RVI-LLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 500 ~ii-vttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
.+| +|+....+.........++++..++.++....+...+...... .-......++..++|-.
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~-i~~~al~~La~~s~gdl 216 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT-AEPEALNVIAQKADGGM 216 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCH
Confidence 544 4555566665556667889999999998887776544222111 11123344566666633
No 491
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.25 E-value=1.3 Score=52.75 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred hHhhhcccccccchhhhhhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccc------------------
Q 048834 153 SEAANSNKKTGMLDFILNDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIK------------------ 214 (1108)
Q Consensus 153 ~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~------------------ 214 (1108)
++++|. +.-+..+.+++..+.-..-.+ ++|..|+||||+|+.+- ..+-
T Consensus 16 ~~viGq-----------~~v~~~L~~~i~~~~~~hayL-f~Gp~GtGKTt~Ak~lA--kal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 16 EDVVGQ-----------EHITKTLKNAIKQGKISHAYL-FSGPRGTGKTSAAKIFA--KAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred HhccCc-----------HHHHHHHHHHHHcCCCCeEEE-EECCCCCCHHHHHHHHH--HHhcCCCCCCCCCCCccHHHHH
Q ss_pred ---cCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCC--ChhhHhHhhhh
Q 048834 215 ---NHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVR--TPDIWEIIKFL 289 (1108)
Q Consensus 215 ---~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw--~~~~~~~l~~~ 289 (1108)
..-...+.+.-+...++..+. ++.+.+.... ..+++-++++|++. ....+++|...
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir-~i~~~v~~~p------------------~~~~~kViIIDE~~~Lt~~a~naLLKt 142 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIR-DIRDKVKYAP------------------SEAKYKVYIIDEVHMLSTGAFNALLKT 142 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHH-HHHHHHhhCc------------------ccCCeEEEEEECcccCCHHHHHHHHHH
Q ss_pred CCCCCCCcEEEEEecchh
Q 048834 290 FPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 290 ~~~~~~GSrIiiTTR~~~ 307 (1108)
+..-.....+|++|...+
T Consensus 143 LEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 143 LEEPPAHVIFILATTEPH 160 (559)
T ss_pred hcCCCCCeEEEEEeCChh
No 492
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.25 E-value=0.11 Score=49.97 Aligned_cols=23 Identities=13% Similarity=0.123 Sum_probs=20.8
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.++.|.|+.|+|||||+++++++
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 45889999999999999999965
No 493
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.24 E-value=0.18 Score=49.05 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=17.8
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|-+.|.+|+||||+|+++-
T Consensus 3 LiIlTGyPgsGKTtfakeLa 22 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELA 22 (261)
T ss_pred eEEEecCCCCCchHHHHHHH
Confidence 46778999999999999887
No 494
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.22 E-value=0.092 Score=52.70 Aligned_cols=22 Identities=18% Similarity=0.108 Sum_probs=19.9
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+|.|+|+.|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999743
No 495
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=92.20 E-value=0.14 Score=58.70 Aligned_cols=41 Identities=5% Similarity=0.089 Sum_probs=31.8
Q ss_pred hhhhhhhHHHhh----hcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 169 LNDEVKGLAELI----LSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 169 l~~~~~~~~~~l----~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+++.+++|++.| ..-+..-+++.++|++|+||||||+.+.+
T Consensus 81 lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 81 MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 466777777776 22344557999999999999999999974
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.19 E-value=0.09 Score=53.86 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=21.2
Q ss_pred CceEeEEccCCCChhhHHHHhcCC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
-.+|+|+|..|+||||||+.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 356999999999999999999853
No 497
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.19 E-value=0.34 Score=49.96 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=18.0
Q ss_pred EeEEccCCCChhhHHHHhc
Q 048834 190 IPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~ 208 (1108)
|.|+|++|+||||+|+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La 27 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILS 27 (229)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999999986
No 498
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.19 E-value=4.6 Score=46.27 Aligned_cols=146 Identities=17% Similarity=0.276 Sum_probs=72.8
Q ss_pred HHHHHHHhCCCC-ceEEEEEEcCCCChHHHHHHHHhcCccccccCc--eeEEEEeccCCCcCHHHHHHHHHHHHhhhhhh
Q 048834 373 LRLAQLTMSSSS-KYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE--YHAWANVDVSHDFDLRKVFINILEQVTRVKIA 449 (1108)
Q Consensus 373 ~~i~~~l~~~~~-~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~--~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~ 449 (1108)
...+..+.+..+ ....+.++|..|+|||.|++++++. +..... ...+++ ..++...+...+...
T Consensus 122 ~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~--------~~~~~~~~~~~~~~~--- 188 (405)
T TIGR00362 122 HAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS--------SEKFTNDFVNALRNN--- 188 (405)
T ss_pred HHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE--------HHHHHHHHHHHHHcC---
Confidence 344555544432 2345789999999999999999876 322221 223333 223333333333211
Q ss_pred hhhhHHHHHHHHHHHhcCCceEEEEeCCCChh---hH-HHHHHHhCCCCCCCCCEEEEEcCc-hHHHHhc----CC---C
Q 048834 450 EELALNELESRLIRLFQSKRYLIVLDDVHLPG---AW-YELQRIFSPNTSSSGSRVILLTRE-AFVARAF----SP---S 517 (1108)
Q Consensus 450 ~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~---~~-~~l~~~~~~~~~~~~s~iivttr~-~~v~~~~----~~---~ 517 (1108)
..+.+... +.. .-++++||+.... .+ +.+...+.... ..+..+++|+.. ......+ .+ .
T Consensus 189 ---~~~~~~~~----~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~-~~~~~iiits~~~p~~l~~l~~~l~SRl~~ 259 (405)
T TIGR00362 189 ---KMEEFKEK----YRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALH-ENGKQIVLTSDRPPKELPGLEERLRSRFEW 259 (405)
T ss_pred ---CHHHHHHH----HHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHH-HCCCCEEEecCCCHHHHhhhhhhhhhhccC
Confidence 12222222 222 3478899987421 11 22332222111 134556666653 2211111 11 1
Q ss_pred cceEecCCCChhhhHHHHhhhhc
Q 048834 518 IILLQLRPLNVDESWELFLKKVG 540 (1108)
Q Consensus 518 ~~~~~~~~L~~~~~~~lf~~~~~ 540 (1108)
...+.+.+.+.+....++...+.
T Consensus 260 g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 260 GLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CeEEEeCCCCHHHHHHHHHHHHH
Confidence 23577788888887777766553
No 499
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=92.18 E-value=0.45 Score=54.09 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=46.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHhh--cc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKLL--ES 256 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~~--~~ 256 (1108)
..++|+|..|.|||||++.+.+..+ -+..++..+.... .+.++..+.+..=..+.. +...... -.
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~~~~----~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~ 239 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAY 239 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC----CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHH
Confidence 4589999999999999999985421 1333445554443 333444333322100000 0000000 01
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ ++|.|||++||+-..
T Consensus 240 ~a~t~AE~frd~G~~Vll~~DslTr~ 265 (440)
T TIGR01026 240 VATAIAEYFRDQGKDVLLLMDSVTRF 265 (440)
T ss_pred HHHHHHHHHHHCCCCEEEEEeChHHH
Confidence 111233333 588999999998653
No 500
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.17 E-value=0.27 Score=57.11 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=50.0
Q ss_pred CCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHH
Q 048834 184 YPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHN 263 (1108)
Q Consensus 184 ~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~ 263 (1108)
.+.-+|.-.+|++|+||||||..|..+ .-|. ++=|..|+.-....+-..|...+.-. .
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkq----aGYs-VvEINASDeRt~~~v~~kI~~avq~~-----------------s 380 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQ----AGYS-VVEINASDERTAPMVKEKIENAVQNH-----------------S 380 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHh----cCce-EEEecccccccHHHHHHHHHHHHhhc-----------------c
Confidence 356788999999999999999999743 2222 23455576666665555554443311 1
Q ss_pred Hcc--CCeEEEEEcCCCChh
Q 048834 264 YLI--HKRYLVILTDVRTPD 281 (1108)
Q Consensus 264 ~l~--~kr~LlVLDDVw~~~ 281 (1108)
.|. ++..-||+|.++-..
T Consensus 381 ~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 381 VLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ccccCCCcceEEEecccCCc
Confidence 232 577889999998643
Done!