Query 048834
Match_columns 1108
No_of_seqs 431 out of 5128
Neff 10.2
Searched_HMMs 29240
Date Tue Mar 26 00:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048834.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048834hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.7E-33 9.1E-38 331.9 23.2 290 170-706 134-447 (549)
2 1vt4_I APAF-1 related killer D 100.0 8E-29 2.7E-33 293.3 15.2 136 170-313 134-282 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 4.2E-25 1.4E-29 293.2 21.1 288 170-705 130-427 (1249)
4 4eco_A Uncharacterized protein 99.9 1.3E-24 4.4E-29 263.5 9.1 293 757-1062 202-547 (636)
5 4ecn_A Leucine-rich repeat pro 99.9 5.7E-24 1.9E-28 261.1 14.5 293 759-1062 489-817 (876)
6 4fmz_A Internalin; leucine ric 99.9 2.3E-23 8E-28 234.0 17.7 283 757-1062 62-344 (347)
7 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-23 4.3E-28 250.4 16.3 362 727-1108 21-478 (520)
8 3o6n_A APL1; leucine-rich repe 99.9 2.8E-23 9.7E-28 237.2 17.4 305 726-1063 44-351 (390)
9 3rgz_A Protein brassinosteroid 99.9 1.1E-23 3.6E-28 261.9 14.2 293 759-1062 221-525 (768)
10 3rgz_A Protein brassinosteroid 99.9 7.3E-24 2.5E-28 263.4 11.8 292 761-1062 294-691 (768)
11 1o6v_A Internalin A; bacterial 99.9 8.2E-23 2.8E-27 238.9 20.0 277 760-1062 67-364 (466)
12 3oja_B Anopheles plasmodium-re 99.9 3.8E-23 1.3E-27 249.3 17.2 305 726-1063 50-357 (597)
13 4ecn_A Leucine-rich repeat pro 99.9 2.3E-23 7.8E-28 255.7 14.9 314 725-1063 489-839 (876)
14 3v47_A TOLL-like receptor 5B a 99.9 4.8E-23 1.7E-27 241.1 16.6 130 760-890 53-190 (455)
15 3vq2_A TLR4, TOLL-like recepto 99.9 5E-23 1.7E-27 250.4 17.3 86 759-844 78-167 (606)
16 4fmz_A Internalin; leucine ric 99.9 6.8E-23 2.3E-27 230.3 16.8 279 760-1062 43-322 (347)
17 3t6q_A CD180 antigen; protein- 99.9 1.1E-22 3.8E-27 247.3 19.9 131 758-890 54-189 (606)
18 2id5_A Lingo-1, leucine rich r 99.9 2.2E-22 7.6E-27 236.7 20.3 292 761-1063 32-332 (477)
19 4eco_A Uncharacterized protein 99.9 2.9E-23 9.9E-28 251.7 12.8 314 725-1063 247-599 (636)
20 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-22 4.9E-27 243.3 18.7 180 727-919 26-210 (549)
21 3o6n_A APL1; leucine-rich repe 99.9 1.5E-22 5.3E-27 231.1 16.3 283 760-1062 44-329 (390)
22 3vq2_A TLR4, TOLL-like recepto 99.9 8.4E-23 2.9E-27 248.4 14.6 323 727-1062 32-435 (606)
23 3v47_A TOLL-like receptor 5B a 99.9 3.1E-22 1.1E-26 234.2 18.8 302 757-1062 75-406 (455)
24 2z63_A TOLL-like receptor 4, v 99.9 7.9E-23 2.7E-27 247.0 12.4 338 759-1108 74-528 (570)
25 3t6q_A CD180 antigen; protein- 99.9 2.8E-22 9.6E-27 243.8 17.2 250 852-1108 274-557 (606)
26 3oja_B Anopheles plasmodium-re 99.9 3.2E-22 1.1E-26 241.3 16.4 283 760-1062 50-335 (597)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-22 1.1E-26 240.0 15.6 316 727-1062 52-461 (562)
28 1o6v_A Internalin A; bacterial 99.9 1.8E-21 6E-26 227.6 21.2 280 762-1063 47-343 (466)
29 4fcg_A Uncharacterized protein 99.9 7.3E-22 2.5E-26 218.3 15.8 230 760-1060 80-310 (328)
30 3bz5_A Internalin-J, INLJ; leu 99.9 6.9E-21 2.4E-25 220.2 22.8 277 757-1063 60-351 (457)
31 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-21 1.1E-25 238.0 20.8 60 1003-1062 453-515 (680)
32 3j0a_A TOLL-like receptor 5; m 99.9 2E-21 6.9E-26 244.1 19.1 298 757-1062 44-392 (844)
33 3bz5_A Internalin-J, INLJ; leu 99.9 3.7E-21 1.3E-25 222.5 18.1 270 760-1062 41-329 (457)
34 2z63_A TOLL-like receptor 4, v 99.9 6.1E-22 2.1E-26 239.2 11.8 319 724-1062 73-505 (570)
35 3j0a_A TOLL-like receptor 5; m 99.9 5.8E-21 2E-25 239.9 20.4 302 760-1063 23-374 (844)
36 2z7x_B TOLL-like receptor 1, v 99.9 5.7E-21 2E-25 227.4 18.3 312 725-1063 43-480 (520)
37 2z81_A CD282 antigen, TOLL-lik 99.8 2.5E-21 8.5E-26 232.5 15.1 321 724-1062 47-508 (549)
38 2id5_A Lingo-1, leucine rich r 99.8 9.3E-21 3.2E-25 222.8 16.8 276 757-1041 52-333 (477)
39 1ziw_A TOLL-like receptor 3; i 99.8 1.2E-20 4E-25 232.8 18.2 319 727-1061 25-363 (680)
40 1xku_A Decorin; proteoglycan, 99.8 4.3E-20 1.5E-24 205.5 18.7 283 762-1061 32-329 (330)
41 1ogq_A PGIP-2, polygalacturona 99.8 2.7E-21 9.2E-26 212.6 7.5 249 761-1042 50-305 (313)
42 2ft3_A Biglycan; proteoglycan, 99.8 3.1E-20 1.1E-24 206.7 15.8 282 763-1062 35-331 (332)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-19 3.7E-24 218.1 20.1 315 724-1063 73-509 (562)
44 1ogq_A PGIP-2, polygalacturona 99.8 8.7E-21 3E-25 208.5 6.2 246 784-1062 50-302 (313)
45 1z6t_A APAF-1, apoptotic prote 99.8 9.2E-19 3.2E-23 211.3 24.5 294 359-704 120-426 (591)
46 2ft3_A Biglycan; proteoglycan, 99.8 6.5E-19 2.2E-23 196.0 16.1 264 761-1039 54-331 (332)
47 1xku_A Decorin; proteoglycan, 99.8 8.9E-19 3.1E-23 194.8 16.2 268 783-1063 30-305 (330)
48 4fcg_A Uncharacterized protein 99.8 1.2E-18 4E-23 192.6 15.9 209 782-1062 79-288 (328)
49 3g06_A SSPH2 (leucine-rich rep 99.8 3.1E-18 1.1E-22 203.5 20.2 255 763-1063 42-296 (622)
50 1jl5_A Outer protein YOPM; leu 99.8 4.6E-18 1.6E-22 196.4 16.5 262 761-1064 131-409 (454)
51 4g8a_A TOLL-like receptor 4; l 99.8 1E-17 3.5E-22 205.3 20.2 350 757-1108 72-577 (635)
52 1jl5_A Outer protein YOPM; leu 99.7 1.3E-18 4.6E-23 200.9 10.0 218 763-1015 36-268 (454)
53 2z80_A TOLL-like receptor 2, v 99.7 1.9E-18 6.6E-23 194.0 10.9 249 763-1063 54-313 (353)
54 2z66_A Variable lymphocyte rec 99.7 2.6E-18 9E-23 188.8 10.8 105 956-1062 151-259 (306)
55 3o53_A Protein LRIM1, AGAP0063 99.7 9E-19 3.1E-23 193.1 6.1 242 759-1042 32-276 (317)
56 2z66_A Variable lymphocyte rec 99.7 3.9E-18 1.3E-22 187.4 10.9 229 761-1041 28-261 (306)
57 4g8a_A TOLL-like receptor 4; l 99.7 4.8E-17 1.6E-21 199.4 19.5 326 723-1062 72-578 (635)
58 2z80_A TOLL-like receptor 2, v 99.7 1.5E-17 5E-22 186.8 13.3 231 757-1015 72-312 (353)
59 3oja_A Leucine-rich immune mol 99.7 1.9E-18 6.6E-23 201.7 5.3 239 759-1039 32-273 (487)
60 3g06_A SSPH2 (leucine-rich rep 99.7 9E-17 3.1E-21 191.0 18.7 238 761-1042 61-298 (622)
61 3zyj_A Leucine-rich repeat-con 99.7 4E-17 1.4E-21 189.1 14.5 103 761-865 64-169 (440)
62 3zyi_A Leucine-rich repeat-con 99.7 3.8E-17 1.3E-21 190.0 14.3 102 762-865 76-180 (452)
63 1ozn_A Reticulon 4 receptor; N 99.7 6.7E-18 2.3E-22 183.3 7.3 221 764-1015 14-236 (285)
64 1z6t_A APAF-1, apoptotic prote 99.7 1.1E-18 3.7E-23 210.7 1.0 160 170-341 130-301 (591)
65 3o53_A Protein LRIM1, AGAP0063 99.7 6.6E-19 2.3E-23 194.2 -2.0 255 763-1059 12-270 (317)
66 3zyj_A Leucine-rich repeat-con 99.7 1.2E-16 4E-21 185.2 15.8 122 763-888 45-168 (440)
67 3zyi_A Leucine-rich repeat-con 99.7 1.2E-16 4E-21 185.9 15.7 243 763-1062 56-301 (452)
68 1wwl_A Monocyte differentiatio 99.7 5.4E-18 1.9E-22 186.3 3.4 245 761-1040 43-308 (312)
69 1z7x_W Ribonuclease inhibitor; 99.7 6.1E-19 2.1E-23 206.7 -4.5 83 979-1062 313-409 (461)
70 1z7x_W Ribonuclease inhibitor; 99.7 2.1E-19 7.1E-24 210.6 -9.5 299 762-1062 86-438 (461)
71 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.1E-22 195.0 4.3 240 773-1054 19-265 (487)
72 1ozn_A Reticulon 4 receptor; N 99.7 4.5E-17 1.5E-21 176.8 7.6 246 761-1038 32-284 (285)
73 1wwl_A Monocyte differentiatio 99.7 5E-18 1.7E-22 186.6 -1.6 246 779-1062 38-307 (312)
74 3ogk_B Coronatine-insensitive 99.6 3.6E-17 1.2E-21 198.3 3.7 296 761-1062 192-524 (592)
75 2ast_B S-phase kinase-associat 99.6 5.3E-17 1.8E-21 181.2 4.4 231 763-1048 72-314 (336)
76 3ogk_B Coronatine-insensitive 99.6 1.3E-16 4.3E-21 193.5 5.9 324 726-1061 191-548 (592)
77 2z62_A TOLL-like receptor 4, v 99.6 4.4E-15 1.5E-19 160.2 12.8 78 763-840 30-110 (276)
78 2z62_A TOLL-like receptor 4, v 99.6 4.2E-15 1.4E-19 160.4 12.3 151 765-919 11-163 (276)
79 1h6u_A Internalin H; cell adhe 99.6 4.7E-15 1.6E-19 162.1 12.4 121 761-890 41-161 (308)
80 2ca6_A RAN GTPase-activating p 99.6 9.2E-17 3.1E-21 182.7 -2.5 241 759-1042 30-317 (386)
81 2o6q_A Variable lymphocyte rec 99.6 1.3E-14 4.3E-19 155.8 14.3 197 763-1015 18-216 (270)
82 2p1m_B Transport inhibitor res 99.6 2.5E-16 8.6E-21 191.0 0.7 302 760-1063 155-518 (594)
83 2ast_B S-phase kinase-associat 99.6 1E-15 3.5E-20 170.7 5.4 183 757-989 89-282 (336)
84 3rfs_A Internalin B, repeat mo 99.6 4.5E-15 1.5E-19 159.4 9.7 206 761-1005 41-247 (272)
85 2p1m_B Transport inhibitor res 99.6 2.6E-16 8.9E-21 190.9 -1.0 295 760-1063 129-493 (594)
86 3rfs_A Internalin B, repeat mo 99.5 9.8E-15 3.3E-19 156.7 9.7 225 763-1051 21-246 (272)
87 1p9a_G Platelet glycoprotein I 99.5 2.5E-14 8.5E-19 154.7 12.9 128 757-890 6-134 (290)
88 2ca6_A RAN GTPase-activating p 99.5 1.8E-16 6.3E-21 180.2 -4.5 257 763-1063 11-315 (386)
89 4ay9_X Follicle-stimulating ho 99.5 3E-14 1E-18 159.2 12.0 234 764-1037 12-255 (350)
90 2xwt_C Thyrotropin receptor; s 99.5 2.4E-14 8.1E-19 150.6 10.4 204 773-1062 23-237 (239)
91 2o6q_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 148.6 14.8 202 784-1042 16-219 (270)
92 2xwt_C Thyrotropin receptor; s 99.5 2.7E-14 9.3E-19 150.2 7.8 82 762-843 32-118 (239)
93 1p9a_G Platelet glycoprotein I 99.5 1.5E-13 5E-18 148.6 12.7 201 780-1040 6-207 (290)
94 3goz_A Leucine-rich repeat-con 99.5 1E-14 3.5E-19 163.9 3.5 133 763-917 24-179 (362)
95 4glp_A Monocyte differentiatio 99.5 1.6E-13 5.4E-18 150.6 12.2 203 760-1015 90-305 (310)
96 1h6u_A Internalin H; cell adhe 99.5 2.1E-13 7E-18 149.1 12.9 151 757-919 59-209 (308)
97 4ay9_X Follicle-stimulating ho 99.4 2.3E-13 7.7E-18 152.0 12.3 219 761-1013 30-255 (350)
98 1h6t_A Internalin B; cell adhe 99.4 4.5E-13 1.5E-17 145.0 10.4 145 761-917 46-190 (291)
99 1m9s_A Internalin B; cell inva 99.4 3.6E-13 1.2E-17 160.0 10.0 146 760-917 42-187 (605)
100 1vt4_I APAF-1 related killer D 99.4 1.4E-12 4.8E-17 155.6 14.9 269 366-705 131-420 (1221)
101 4ezg_A Putative uncharacterize 99.4 5.7E-13 2E-17 135.1 8.7 147 762-916 45-192 (197)
102 2a5y_B CED-4; apoptosis; HET: 99.4 3E-12 1E-16 151.4 15.5 163 366-538 131-305 (549)
103 4glp_A Monocyte differentiatio 99.3 6.2E-13 2.1E-17 145.8 7.2 221 785-1062 65-305 (310)
104 1m9s_A Internalin B; cell inva 99.3 4.7E-13 1.6E-17 158.9 6.5 189 763-993 23-211 (605)
105 3cvr_A Invasion plasmid antige 99.3 1.8E-12 6.3E-17 151.9 11.3 185 762-993 60-244 (571)
106 3goz_A Leucine-rich repeat-con 99.3 5.8E-14 2E-18 157.7 -2.0 133 765-919 2-152 (362)
107 1h6t_A Internalin B; cell adhe 99.3 4.6E-12 1.6E-16 137.0 12.1 152 757-920 64-215 (291)
108 3cvr_A Invasion plasmid antige 99.3 1.1E-12 3.9E-17 153.6 7.3 55 785-844 60-114 (571)
109 3m19_A Variable lymphocyte rec 99.3 6.4E-12 2.2E-16 132.9 12.1 150 763-918 16-168 (251)
110 3m19_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 132.2 12.7 103 784-890 14-117 (251)
111 2o6s_A Variable lymphocyte rec 99.3 2.5E-12 8.5E-17 131.8 8.3 78 763-840 30-110 (208)
112 4ezg_A Putative uncharacterize 99.3 9.2E-12 3.2E-16 126.1 10.5 152 877-1062 41-192 (197)
113 1xeu_A Internalin C; cellular 99.2 1.2E-11 4.2E-16 131.3 9.2 147 760-919 40-186 (263)
114 1dce_A Protein (RAB geranylger 99.2 2.9E-13 9.8E-18 159.9 -4.2 207 804-1058 346-567 (567)
115 1xeu_A Internalin C; cellular 99.2 4.6E-12 1.6E-16 134.6 4.8 146 760-918 18-163 (263)
116 2ell_A Acidic leucine-rich nuc 99.2 2.9E-11 9.9E-16 119.0 9.1 106 759-866 22-130 (168)
117 2je0_A Acidic leucine-rich nuc 99.2 2E-11 6.9E-16 117.3 7.3 126 760-887 16-147 (149)
118 2v9t_B SLIT homolog 2 protein 99.2 3.6E-11 1.2E-15 123.8 9.6 130 761-892 32-164 (220)
119 2v70_A SLIT-2, SLIT homolog 2 99.2 2.9E-11 9.8E-16 124.6 8.7 127 763-891 34-164 (220)
120 2v9t_B SLIT homolog 2 protein 99.2 6.7E-11 2.3E-15 121.9 10.6 150 764-918 14-165 (220)
121 4b8c_D Glucose-repressible alc 99.2 9.9E-12 3.4E-16 151.7 5.0 105 759-866 222-326 (727)
122 2o6s_A Variable lymphocyte rec 99.2 4.3E-11 1.5E-15 122.5 8.7 149 764-918 10-161 (208)
123 1a9n_A U2A', U2A'; complex (nu 99.2 1E-10 3.4E-15 116.0 11.0 138 752-892 10-152 (176)
124 3e6j_A Variable lymphocyte rec 99.1 7.8E-11 2.7E-15 122.3 9.7 129 761-892 40-171 (229)
125 3e6j_A Variable lymphocyte rec 99.1 1.5E-10 5E-15 120.2 11.4 148 763-917 21-171 (229)
126 2v70_A SLIT-2, SLIT homolog 2 99.1 1.3E-10 4.3E-15 119.8 10.5 152 763-919 13-167 (220)
127 2xot_A Amphoterin-induced prot 99.1 1.2E-10 4E-15 130.5 8.3 99 764-866 21-122 (361)
128 4b8c_D Glucose-repressible alc 99.0 6.6E-11 2.3E-15 144.5 4.3 85 760-844 246-330 (727)
129 2xot_A Amphoterin-induced prot 99.0 3E-10 1E-14 127.1 9.4 153 762-917 40-201 (361)
130 1w8a_A SLIT protein; signaling 99.0 4.2E-10 1.4E-14 113.1 9.3 124 764-891 11-137 (192)
131 2wfh_A SLIT homolog 2 protein 99.0 7.2E-10 2.5E-14 111.3 10.9 123 765-891 14-137 (193)
132 2ell_A Acidic leucine-rich nuc 99.0 3.8E-10 1.3E-14 110.9 7.6 136 781-921 21-163 (168)
133 1ds9_A Outer arm dynein; leuci 99.0 4.8E-11 1.6E-15 120.9 -0.2 143 763-911 25-180 (198)
134 1dce_A Protein (RAB geranylger 99.0 9.9E-10 3.4E-14 129.6 10.3 102 763-867 443-544 (567)
135 3sfz_A APAF-1, apoptotic pepti 99.0 1.7E-09 5.8E-14 143.2 13.4 169 358-537 119-297 (1249)
136 2je0_A Acidic leucine-rich nuc 99.0 6E-10 2.1E-14 106.9 6.5 127 782-913 15-148 (149)
137 3sb4_A Hypothetical leucine ri 98.9 4.2E-09 1.4E-13 116.2 10.2 259 760-1058 48-328 (329)
138 2o6r_A Variable lymphocyte rec 98.9 1.6E-08 5.5E-13 100.1 12.8 125 764-892 10-136 (177)
139 2wfh_A SLIT homolog 2 protein 98.9 6.2E-09 2.1E-13 104.4 9.8 104 761-866 31-136 (193)
140 1ds9_A Outer arm dynein; leuci 98.8 3.7E-11 1.3E-15 121.8 -7.3 124 760-886 47-180 (198)
141 1a9n_A U2A', U2A'; complex (nu 98.8 4E-09 1.4E-13 104.4 7.5 132 779-917 14-152 (176)
142 3qfl_A MLA10; coiled-coil, (CC 98.8 6E-10 2.1E-14 99.2 1.3 68 5-72 1-84 (115)
143 1w8a_A SLIT protein; signaling 98.8 2.9E-09 1E-13 106.9 6.2 128 786-918 10-139 (192)
144 1w5s_A Origin recognition comp 98.7 3.2E-09 1.1E-13 121.6 4.3 166 170-338 28-227 (412)
145 2r9u_A Variable lymphocyte rec 98.7 3.5E-08 1.2E-12 96.9 9.2 78 764-843 15-94 (174)
146 3g39_A Variable lymphocyte rec 98.7 3.8E-08 1.3E-12 96.4 9.0 79 763-843 11-91 (170)
147 2o6r_A Variable lymphocyte rec 98.7 5E-08 1.7E-12 96.5 9.8 105 761-867 28-135 (177)
148 2r9u_A Variable lymphocyte rec 98.7 4.3E-08 1.5E-12 96.3 8.4 83 761-843 33-118 (174)
149 3sb4_A Hypothetical leucine ri 98.6 8.3E-08 2.8E-12 105.7 10.3 236 763-1034 74-327 (329)
150 3g39_A Variable lymphocyte rec 98.6 7.5E-08 2.6E-12 94.2 8.4 83 761-843 30-115 (170)
151 2qby_B CDC6 homolog 3, cell di 98.6 2.1E-08 7.1E-13 113.6 3.8 166 170-338 26-209 (384)
152 2qen_A Walker-type ATPase; unk 98.4 7.7E-08 2.6E-12 107.4 3.3 156 170-337 18-214 (350)
153 2v1u_A Cell division control p 98.4 2.1E-07 7.2E-12 105.5 6.8 166 170-338 25-213 (387)
154 2fna_A Conserved hypothetical 98.4 3.9E-07 1.3E-11 101.9 7.4 155 170-337 19-220 (357)
155 1njg_A DNA polymerase III subu 98.3 9.8E-07 3.3E-11 92.7 7.8 160 170-339 29-198 (250)
156 2qby_A CDC6 homolog 1, cell di 98.3 6.6E-07 2.2E-11 101.3 6.3 137 170-309 26-176 (386)
157 1fnn_A CDC6P, cell division co 98.2 3E-06 1E-10 95.8 11.5 137 170-309 23-172 (389)
158 2ifg_A High affinity nerve gro 98.2 1.2E-06 4.2E-11 97.2 8.0 87 757-843 27-116 (347)
159 1w5s_A Origin recognition comp 98.2 6.8E-06 2.3E-10 93.8 14.2 207 363-571 22-267 (412)
160 2qen_A Walker-type ATPase; unk 98.2 1E-05 3.6E-10 89.9 15.0 195 362-573 11-249 (350)
161 2ra8_A Uncharacterized protein 98.2 3.5E-07 1.2E-11 100.7 2.3 171 874-1073 133-331 (362)
162 2ifg_A High affinity nerve gro 98.2 3.3E-06 1.1E-10 93.7 9.7 98 765-866 12-113 (347)
163 3un9_A NLR family member X1; l 98.1 2.9E-07 1E-11 102.4 0.0 135 761-917 101-251 (372)
164 4fdw_A Leucine rich hypothetic 98.1 5.4E-05 1.9E-09 84.9 18.5 109 955-1071 271-387 (401)
165 2chg_A Replication factor C sm 98.1 9.5E-06 3.3E-10 83.6 10.9 116 170-306 23-142 (226)
166 2ra8_A Uncharacterized protein 98.1 2.3E-06 7.8E-11 94.2 6.1 155 759-915 137-317 (362)
167 4fdw_A Leucine rich hypothetic 98.1 4.4E-05 1.5E-09 85.7 16.7 239 762-1038 136-380 (401)
168 3un9_A NLR family member X1; l 98.1 9.7E-07 3.3E-11 98.2 2.5 82 762-843 127-224 (372)
169 2fna_A Conserved hypothetical 98.0 5.6E-05 1.9E-09 84.1 14.7 192 362-574 12-254 (357)
170 2qby_B CDC6 homolog 3, cell di 97.9 0.00018 6.1E-09 80.9 16.6 172 363-539 20-210 (384)
171 2qby_A CDC6 homolog 1, cell di 97.9 5.5E-05 1.9E-09 85.3 12.0 172 363-539 20-210 (386)
172 3e4g_A ATP synthase subunit S, 97.8 3.8E-06 1.3E-10 80.5 1.7 63 1001-1063 82-151 (176)
173 2v1u_A Cell division control p 97.8 0.00015 5.2E-09 81.7 14.9 173 363-539 19-214 (387)
174 1fnn_A CDC6P, cell division co 97.8 0.00034 1.2E-08 78.7 16.5 172 363-539 17-206 (389)
175 3e4g_A ATP synthase subunit S, 97.8 9E-06 3.1E-10 77.9 2.6 87 956-1042 62-153 (176)
176 1sxj_B Activator 1 37 kDa subu 97.7 2.7E-05 9.4E-10 85.3 6.7 116 170-306 27-147 (323)
177 1njg_A DNA polymerase III subu 97.7 4.4E-05 1.5E-09 79.8 8.0 198 363-573 23-231 (250)
178 2chg_A Replication factor C sm 97.6 0.00046 1.6E-08 70.6 14.1 178 364-570 18-204 (226)
179 2w58_A DNAI, primosome compone 97.6 4.8E-05 1.6E-09 76.6 5.8 98 188-305 55-158 (202)
180 3ec2_A DNA replication protein 97.6 2.3E-05 7.7E-10 77.4 3.0 100 187-305 38-142 (180)
181 3te6_A Regulatory protein SIR3 97.5 0.00011 3.9E-09 78.1 7.5 108 170-280 26-144 (318)
182 1iqp_A RFCS; clamp loader, ext 97.5 7E-05 2.4E-09 82.1 5.4 111 171-306 32-150 (327)
183 2z4s_A Chromosomal replication 97.4 9.9E-05 3.4E-09 83.8 5.8 102 187-305 130-236 (440)
184 3te6_A Regulatory protein SIR3 97.4 0.0011 3.7E-08 70.6 13.3 172 365-539 22-211 (318)
185 4fs7_A Uncharacterized protein 97.4 0.0037 1.3E-07 70.2 18.6 281 757-1060 67-375 (394)
186 1io0_A Tropomodulin; LRR prote 97.4 0.00016 5.4E-09 71.4 5.7 79 759-837 34-128 (185)
187 1io0_A Tropomodulin; LRR prote 97.3 5.1E-05 1.8E-09 74.9 1.8 115 778-892 30-163 (185)
188 3rw6_A Nuclear RNA export fact 97.3 0.00017 5.7E-09 74.9 5.7 77 759-836 168-257 (267)
189 3cf2_A TER ATPase, transitiona 97.3 0.00017 5.8E-09 86.5 6.0 46 364-409 478-534 (806)
190 1jbk_A CLPB protein; beta barr 97.3 0.00011 3.6E-09 73.5 3.5 38 170-209 28-65 (195)
191 3h4m_A Proteasome-activating n 97.2 0.00014 4.8E-09 77.9 3.5 25 186-210 50-74 (285)
192 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.00041 1.4E-08 73.1 6.5 23 187-209 39-61 (262)
193 3n70_A Transport activator; si 97.1 0.0012 4.1E-08 62.0 8.8 21 190-210 27-47 (145)
194 1sxj_B Activator 1 37 kDa subu 97.1 0.0019 6.4E-08 70.5 11.7 184 363-569 21-209 (323)
195 4fs7_A Uncharacterized protein 97.1 0.0038 1.3E-07 70.2 14.4 278 757-1056 90-393 (394)
196 1ypw_A Transitional endoplasmi 97.1 0.00062 2.1E-08 83.3 8.0 46 364-409 478-534 (806)
197 2chq_A Replication factor C sm 97.1 0.00081 2.8E-08 73.2 8.2 112 171-306 24-142 (319)
198 3syl_A Protein CBBX; photosynt 97.0 0.00073 2.5E-08 73.2 7.1 104 185-306 65-179 (309)
199 2kjq_A DNAA-related protein; s 97.0 0.00066 2.2E-08 63.9 5.5 24 187-210 36-59 (149)
200 3co5_A Putative two-component 97.0 0.00074 2.5E-08 63.2 5.8 21 190-210 30-50 (143)
201 2p65_A Hypothetical protein PF 96.9 0.0018 6.2E-08 63.8 8.6 38 170-209 28-65 (187)
202 3bos_A Putative DNA replicatio 96.9 0.00011 3.7E-09 76.5 -0.6 39 186-226 51-89 (242)
203 1jr3_A DNA polymerase III subu 96.9 0.0016 5.5E-08 72.7 8.9 38 171-209 23-60 (373)
204 3rw6_A Nuclear RNA export fact 96.9 0.00062 2.1E-08 70.6 5.0 82 781-863 167-258 (267)
205 3cf0_A Transitional endoplasmi 96.9 0.0012 4.1E-08 70.9 6.8 73 185-279 47-119 (301)
206 1hqc_A RUVB; extended AAA-ATPa 96.8 0.00079 2.7E-08 73.5 4.9 24 186-209 37-60 (324)
207 3u61_B DNA polymerase accessor 96.7 0.0034 1.2E-07 68.3 8.9 112 171-307 33-147 (324)
208 1l8q_A Chromosomal replication 96.7 0.0018 6.1E-08 70.6 6.5 99 186-304 36-139 (324)
209 1sxj_D Activator 1 41 kDa subu 96.6 0.0018 6.2E-08 71.6 6.5 126 171-305 44-172 (353)
210 1sxj_A Activator 1 95 kDa subu 96.6 0.0027 9.1E-08 73.9 7.7 24 187-210 77-100 (516)
211 1d2n_A N-ethylmaleimide-sensit 96.6 0.0051 1.8E-07 64.9 9.3 25 185-209 62-86 (272)
212 1iqp_A RFCS; clamp loader, ext 96.6 0.0085 2.9E-07 65.3 11.3 185 363-570 25-212 (327)
213 2zan_A Vacuolar protein sortin 96.6 0.0043 1.5E-07 70.4 8.9 25 186-210 166-190 (444)
214 2qgz_A Helicase loader, putati 96.5 0.0013 4.6E-08 70.5 4.0 37 187-225 152-189 (308)
215 3eie_A Vacuolar protein sortin 96.5 0.0044 1.5E-07 67.2 8.2 24 187-210 51-74 (322)
216 1sxj_E Activator 1 40 kDa subu 96.4 0.0038 1.3E-07 69.0 7.4 37 171-209 21-58 (354)
217 3uk6_A RUVB-like 2; hexameric 96.4 0.014 4.9E-07 64.7 12.1 36 175-210 58-93 (368)
218 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0068 2.3E-07 65.5 8.7 24 187-210 45-68 (322)
219 1jbk_A CLPB protein; beta barr 96.3 0.037 1.3E-06 54.4 13.2 45 363-409 22-66 (195)
220 3pfi_A Holliday junction ATP-d 96.3 0.0046 1.6E-07 67.8 6.6 39 171-209 36-77 (338)
221 3d8b_A Fidgetin-like protein 1 96.2 0.01 3.6E-07 65.2 9.2 24 186-209 116-139 (357)
222 3lw7_A Adenylate kinase relate 96.1 0.016 5.5E-07 56.3 9.3 107 188-311 2-117 (179)
223 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0014 4.9E-08 68.8 1.5 69 187-279 123-193 (331)
224 2qp9_X Vacuolar protein sortin 96.1 0.0091 3.1E-07 65.5 7.8 23 188-210 85-107 (355)
225 2cvh_A DNA repair and recombin 96.0 0.011 3.8E-07 60.0 7.7 88 186-279 19-116 (220)
226 4dcu_A GTP-binding protein ENG 96.0 0.034 1.2E-06 63.3 12.5 43 367-409 171-218 (456)
227 1jr3_A DNA polymerase III subu 96.0 0.036 1.2E-06 61.5 12.4 183 363-570 16-221 (373)
228 2hjg_A GTP-binding protein ENG 96.0 0.022 7.5E-07 64.5 10.5 45 366-410 150-199 (436)
229 3pvs_A Replication-associated 95.9 0.021 7.3E-07 64.4 10.1 23 187-209 50-72 (447)
230 1lv7_A FTSH; alpha/beta domain 95.9 0.011 3.7E-07 61.8 7.2 22 189-210 47-68 (257)
231 2gno_A DNA polymerase III, gam 95.9 0.021 7.2E-07 60.8 9.3 110 174-305 7-121 (305)
232 1sxj_C Activator 1 40 kDa subu 95.9 0.012 4.1E-07 64.4 7.6 112 173-305 34-149 (340)
233 3vfd_A Spastin; ATPase, microt 95.8 0.01 3.5E-07 66.3 6.7 23 187-209 148-170 (389)
234 1a5t_A Delta prime, HOLB; zinc 95.8 0.049 1.7E-06 59.1 12.0 40 267-306 107-148 (334)
235 4gt6_A Cell surface protein; l 95.7 0.19 6.3E-06 56.1 17.0 101 955-1062 265-368 (394)
236 2bjv_A PSP operon transcriptio 95.7 0.016 5.5E-07 60.8 7.6 23 188-210 30-52 (265)
237 3t15_A Ribulose bisphosphate c 95.7 0.015 5.1E-07 61.9 7.3 25 186-210 35-59 (293)
238 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.12 4E-06 53.9 13.7 177 364-563 7-214 (262)
239 1ojl_A Transcriptional regulat 95.5 0.026 8.7E-07 60.3 8.2 21 189-209 27-47 (304)
240 3b9p_A CG5977-PA, isoform A; A 95.4 0.044 1.5E-06 58.5 9.6 23 187-209 54-76 (297)
241 4fcw_A Chaperone protein CLPB; 95.4 0.015 5.3E-07 62.6 6.0 23 187-209 47-69 (311)
242 3pvs_A Replication-associated 95.4 0.13 4.4E-06 58.0 13.6 145 363-539 26-178 (447)
243 2r62_A Cell division protease 95.3 0.0041 1.4E-07 65.5 1.1 21 190-210 47-67 (268)
244 1g5t_A COB(I)alamin adenosyltr 95.3 0.032 1.1E-06 54.1 7.2 117 188-306 29-163 (196)
245 4gt6_A Cell surface protein; l 95.2 0.14 4.8E-06 57.1 13.5 124 929-1059 261-386 (394)
246 1mky_A Probable GTP-binding pr 95.2 0.1 3.4E-06 59.1 12.3 44 366-409 151-203 (439)
247 2ce7_A Cell division protein F 95.2 0.039 1.3E-06 62.4 8.6 22 189-210 51-72 (476)
248 2chq_A Replication factor C sm 95.1 0.043 1.5E-06 59.3 8.7 177 364-567 18-201 (319)
249 3pxg_A Negative regulator of g 95.1 0.038 1.3E-06 63.1 8.4 38 170-209 186-223 (468)
250 4a74_A DNA repair and recombin 95.0 0.084 2.9E-06 53.8 10.2 47 187-233 25-75 (231)
251 1n0w_A DNA repair protein RAD5 95.0 0.04 1.4E-06 56.8 7.7 93 186-279 23-130 (243)
252 3hu3_A Transitional endoplasmi 95.0 0.022 7.6E-07 65.0 6.1 24 186-209 237-260 (489)
253 1hqc_A RUVB; extended AAA-ATPa 95.0 0.06 2E-06 58.3 9.4 180 363-573 12-214 (324)
254 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.048 1.6E-06 55.8 8.1 22 188-209 24-45 (235)
255 3c8u_A Fructokinase; YP_612366 95.0 0.015 5.2E-07 58.3 4.1 34 176-209 11-44 (208)
256 3uk6_A RUVB-like 2; hexameric 94.9 0.58 2E-05 51.5 17.5 47 363-409 44-93 (368)
257 3h4m_A Proteasome-activating n 94.9 0.047 1.6E-06 57.8 8.2 153 364-539 18-201 (285)
258 3jvv_A Twitching mobility prot 94.9 0.0082 2.8E-07 65.3 2.0 112 188-311 124-236 (356)
259 2eyu_A Twitching motility prot 94.8 0.018 6.3E-07 59.7 4.2 112 187-310 25-137 (261)
260 1odf_A YGR205W, hypothetical 3 94.7 0.022 7.5E-07 60.1 4.8 27 183-209 27-53 (290)
261 3ice_A Transcription terminati 94.6 0.013 4.5E-07 62.8 2.7 39 189-229 176-216 (422)
262 1sky_E F1-ATPase, F1-ATP synth 94.6 0.049 1.7E-06 60.6 7.4 49 189-239 153-203 (473)
263 4eun_A Thermoresistant glucoki 94.6 0.091 3.1E-06 52.1 8.8 24 186-209 28-51 (200)
264 2z43_A DNA repair and recombin 94.6 0.089 3.1E-06 56.7 9.4 57 186-243 106-166 (324)
265 1sxj_D Activator 1 41 kDa subu 94.5 0.092 3.2E-06 57.6 9.6 192 364-567 38-232 (353)
266 2b8t_A Thymidine kinase; deoxy 94.5 0.0093 3.2E-07 59.9 1.2 114 187-308 12-128 (223)
267 2p65_A Hypothetical protein PF 94.5 0.11 3.9E-06 50.5 9.2 45 363-409 22-66 (187)
268 1d2n_A N-ethylmaleimide-sensit 94.5 0.44 1.5E-05 49.8 14.2 45 365-409 35-87 (272)
269 2z4s_A Chromosomal replication 94.4 0.19 6.5E-06 56.7 11.7 164 377-566 121-302 (440)
270 3pfi_A Holliday junction ATP-d 94.4 0.24 8.2E-06 53.8 12.3 175 363-569 29-226 (338)
271 1v5w_A DMC1, meiotic recombina 94.2 0.11 3.8E-06 56.4 9.1 67 176-243 111-181 (343)
272 2ck3_D ATP synthase subunit be 94.2 0.065 2.2E-06 59.4 7.0 51 190-241 156-207 (482)
273 1zp6_A Hypothetical protein AT 94.2 0.019 6.4E-07 56.7 2.6 22 188-209 10-31 (191)
274 1qvr_A CLPB protein; coiled co 94.2 0.058 2E-06 66.8 7.5 38 170-209 176-213 (854)
275 3m6a_A ATP-dependent protease 94.1 0.057 1.9E-06 62.8 6.9 24 186-209 107-130 (543)
276 1sxj_E Activator 1 40 kDa subu 94.1 0.2 6.7E-06 55.0 11.0 99 466-566 132-233 (354)
277 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.56 1.9E-05 50.3 14.3 46 364-409 13-68 (322)
278 1kag_A SKI, shikimate kinase I 94.0 0.02 6.8E-07 55.4 2.4 22 188-209 5-26 (173)
279 3hr8_A Protein RECA; alpha and 94.0 0.066 2.3E-06 57.8 6.7 87 186-279 60-150 (356)
280 1rz3_A Hypothetical protein rb 94.0 0.039 1.3E-06 54.9 4.5 36 173-208 7-43 (201)
281 3kb2_A SPBC2 prophage-derived 94.0 0.022 7.5E-07 55.1 2.7 21 188-208 2-22 (173)
282 3vaa_A Shikimate kinase, SK; s 94.0 0.022 7.5E-07 56.7 2.6 22 187-208 25-46 (199)
283 4gp7_A Metallophosphoesterase; 94.0 0.025 8.5E-07 54.6 2.9 22 188-209 10-31 (171)
284 3b9p_A CG5977-PA, isoform A; A 94.0 0.41 1.4E-05 50.8 12.8 46 364-409 22-77 (297)
285 3ec2_A DNA replication protein 93.9 0.34 1.2E-05 46.9 11.1 24 386-409 38-61 (180)
286 3eie_A Vacuolar protein sortin 93.9 0.36 1.2E-05 52.0 12.3 46 364-409 19-74 (322)
287 1qhx_A CPT, protein (chloramph 93.9 0.024 8.2E-07 55.2 2.6 21 188-208 4-24 (178)
288 1kgd_A CASK, peripheral plasma 93.9 0.024 8.3E-07 55.2 2.6 22 188-209 6-27 (180)
289 1r6b_X CLPA protein; AAA+, N-t 93.9 0.16 5.6E-06 62.1 10.6 47 363-409 458-511 (758)
290 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.12 4E-06 55.7 8.2 107 188-310 172-279 (330)
291 3syl_A Protein CBBX; photosynt 93.7 0.19 6.4E-06 53.9 9.7 46 364-409 32-90 (309)
292 1sxj_A Activator 1 95 kDa subu 93.7 0.26 9E-06 57.0 11.4 188 363-571 39-254 (516)
293 3d8b_A Fidgetin-like protein 1 93.7 0.24 8.3E-06 54.2 10.5 46 364-409 85-140 (357)
294 1ly1_A Polynucleotide kinase; 93.6 0.029 9.8E-07 54.7 2.6 22 188-209 3-24 (181)
295 3fwy_A Light-independent proto 93.6 0.03 1E-06 59.8 2.9 24 185-208 46-69 (314)
296 1knq_A Gluconate kinase; ALFA/ 93.5 0.038 1.3E-06 53.5 3.3 22 187-208 8-29 (175)
297 2i1q_A DNA repair and recombin 93.5 0.12 4.2E-06 55.7 7.7 57 186-243 97-167 (322)
298 3pxi_A Negative regulator of g 93.5 0.1 3.6E-06 63.7 8.0 38 170-209 186-223 (758)
299 3trf_A Shikimate kinase, SK; a 93.5 0.031 1.1E-06 54.7 2.7 22 187-208 5-26 (185)
300 3cf0_A Transitional endoplasmi 93.5 0.89 3E-05 48.2 14.3 46 364-409 16-72 (301)
301 3t61_A Gluconokinase; PSI-biol 93.4 0.029 1E-06 55.9 2.4 23 187-209 18-40 (202)
302 2bdt_A BH3686; alpha-beta prot 93.4 0.032 1.1E-06 54.9 2.6 21 188-208 3-23 (189)
303 3uie_A Adenylyl-sulfate kinase 93.4 0.032 1.1E-06 55.5 2.6 24 186-209 24-47 (200)
304 4h09_A Hypothetical leucine ri 93.4 1.1 3.6E-05 49.5 15.5 55 759-816 67-122 (379)
305 3bos_A Putative DNA replicatio 93.3 0.095 3.2E-06 53.7 6.2 164 370-568 38-215 (242)
306 3a00_A Guanylate kinase, GMP k 93.3 0.032 1.1E-06 54.7 2.4 22 188-209 2-23 (186)
307 1xjc_A MOBB protein homolog; s 93.3 0.038 1.3E-06 52.5 2.8 23 186-208 3-25 (169)
308 2qt1_A Nicotinamide riboside k 93.3 0.039 1.3E-06 55.2 3.1 24 186-209 20-43 (207)
309 1ye8_A Protein THEP1, hypothet 93.3 0.035 1.2E-06 53.8 2.6 22 189-210 2-23 (178)
310 3tr0_A Guanylate kinase, GMP k 93.2 0.035 1.2E-06 55.5 2.6 22 188-209 8-29 (205)
311 2ewv_A Twitching motility prot 93.2 0.095 3.2E-06 57.5 6.3 112 186-311 135-249 (372)
312 1zuh_A Shikimate kinase; alpha 93.2 0.037 1.3E-06 53.2 2.6 23 186-208 6-28 (168)
313 3vfd_A Spastin; ATPase, microt 93.2 0.63 2.1E-05 51.6 13.1 46 364-409 116-171 (389)
314 2zr9_A Protein RECA, recombina 93.2 0.11 3.6E-06 56.5 6.5 45 186-232 60-104 (349)
315 3lda_A DNA repair protein RAD5 93.2 0.28 9.6E-06 54.0 10.0 68 175-243 166-237 (400)
316 2if2_A Dephospho-COA kinase; a 93.2 0.036 1.2E-06 55.4 2.6 20 189-208 3-22 (204)
317 1fx0_B ATP synthase beta chain 93.1 0.15 5.3E-06 56.7 7.7 51 190-241 168-219 (498)
318 1xp8_A RECA protein, recombina 93.1 0.12 4E-06 56.4 6.7 45 186-232 73-117 (366)
319 3pxi_A Negative regulator of g 93.1 0.039 1.3E-06 67.6 3.1 21 189-209 523-543 (758)
320 3iij_A Coilin-interacting nucl 93.0 0.038 1.3E-06 53.8 2.4 22 187-208 11-32 (180)
321 1uf9_A TT1252 protein; P-loop, 93.0 0.044 1.5E-06 54.6 3.0 23 186-208 7-29 (203)
322 2j41_A Guanylate kinase; GMP, 93.0 0.04 1.4E-06 55.1 2.6 22 188-209 7-28 (207)
323 1via_A Shikimate kinase; struc 93.0 0.039 1.3E-06 53.5 2.4 20 189-208 6-25 (175)
324 1pzn_A RAD51, DNA repair and r 93.0 0.24 8.3E-06 53.8 9.0 57 185-242 129-189 (349)
325 3asz_A Uridine kinase; cytidin 92.9 0.04 1.4E-06 55.3 2.6 24 186-209 5-28 (211)
326 1jjv_A Dephospho-COA kinase; P 92.9 0.041 1.4E-06 55.0 2.6 22 188-209 3-24 (206)
327 2iyv_A Shikimate kinase, SK; t 92.9 0.039 1.3E-06 54.0 2.4 20 189-208 4-23 (184)
328 3vr4_D V-type sodium ATPase su 92.9 0.095 3.3E-06 57.7 5.6 88 190-279 154-259 (465)
329 1l8q_A Chromosomal replication 92.9 0.84 2.9E-05 49.1 13.3 131 385-539 36-179 (324)
330 3rfe_A Platelet glycoprotein I 92.9 0.14 4.9E-06 46.3 6.0 52 788-841 12-66 (130)
331 1cke_A CK, MSSA, protein (cyti 92.9 0.042 1.4E-06 55.9 2.6 21 188-208 6-26 (227)
332 2qor_A Guanylate kinase; phosp 92.9 0.04 1.4E-06 55.0 2.4 24 186-209 11-34 (204)
333 2orw_A Thymidine kinase; TMTK, 92.9 0.016 5.3E-07 56.7 -0.6 41 264-307 72-114 (184)
334 4b4t_L 26S protease subunit RP 92.8 0.07 2.4E-06 59.3 4.5 26 185-210 213-238 (437)
335 1lvg_A Guanylate kinase, GMP k 92.8 0.042 1.4E-06 54.4 2.4 22 188-209 5-26 (198)
336 1kht_A Adenylate kinase; phosp 92.8 0.044 1.5E-06 53.9 2.6 22 188-209 4-25 (192)
337 2jaq_A Deoxyguanosine kinase; 92.8 0.044 1.5E-06 54.7 2.6 21 189-209 2-22 (205)
338 1y63_A LMAJ004144AAA protein; 92.8 0.046 1.6E-06 53.4 2.7 22 187-208 10-31 (184)
339 1nks_A Adenylate kinase; therm 92.8 0.044 1.5E-06 54.0 2.6 22 188-209 2-23 (194)
340 2grj_A Dephospho-COA kinase; T 92.7 0.047 1.6E-06 53.5 2.6 24 185-208 10-33 (192)
341 3tau_A Guanylate kinase, GMP k 92.7 0.047 1.6E-06 54.6 2.6 23 187-209 8-30 (208)
342 2qp9_X Vacuolar protein sortin 92.6 0.53 1.8E-05 51.4 11.2 46 364-409 52-107 (355)
343 3u61_B DNA polymerase accessor 92.6 0.26 8.8E-06 53.2 8.7 143 363-533 26-172 (324)
344 1ukz_A Uridylate kinase; trans 92.6 0.059 2E-06 53.6 3.2 23 186-208 14-36 (203)
345 2rhm_A Putative kinase; P-loop 92.5 0.06 2.1E-06 53.0 3.2 22 187-208 5-26 (193)
346 1a5t_A Delta prime, HOLB; zinc 92.5 1.2 4.3E-05 47.9 14.0 92 467-566 107-201 (334)
347 1e6c_A Shikimate kinase; phosp 92.5 0.048 1.6E-06 52.6 2.4 21 188-208 3-23 (173)
348 3aez_A Pantothenate kinase; tr 92.5 0.049 1.7E-06 58.1 2.6 25 185-209 88-112 (312)
349 2ze6_A Isopentenyl transferase 92.5 0.051 1.7E-06 56.2 2.6 21 188-208 2-22 (253)
350 2bbw_A Adenylate kinase 4, AK4 92.5 0.051 1.7E-06 56.1 2.6 22 187-208 27-48 (246)
351 1in4_A RUVB, holliday junction 92.5 0.077 2.6E-06 57.6 4.2 25 186-210 50-74 (334)
352 2yvu_A Probable adenylyl-sulfa 92.4 0.053 1.8E-06 53.1 2.6 23 187-209 13-35 (186)
353 1znw_A Guanylate kinase, GMP k 92.4 0.054 1.8E-06 54.1 2.7 22 188-209 21-42 (207)
354 3io5_A Recombination and repai 92.4 0.16 5.5E-06 53.1 6.2 50 189-245 30-81 (333)
355 1sxj_C Activator 1 40 kDa subu 92.4 0.89 3E-05 49.3 12.6 153 365-539 27-182 (340)
356 2c95_A Adenylate kinase 1; tra 92.4 0.061 2.1E-06 53.1 3.0 22 187-208 9-30 (196)
357 3cm0_A Adenylate kinase; ATP-b 92.3 0.055 1.9E-06 53.0 2.6 21 188-208 5-25 (186)
358 1tev_A UMP-CMP kinase; ploop, 92.3 0.056 1.9E-06 53.4 2.6 21 188-208 4-24 (196)
359 1htw_A HI0065; nucleotide-bind 92.3 0.059 2E-06 50.8 2.6 23 187-209 33-55 (158)
360 4e22_A Cytidylate kinase; P-lo 92.3 0.056 1.9E-06 55.9 2.6 22 187-208 27-48 (252)
361 2bwj_A Adenylate kinase 5; pho 92.3 0.057 1.9E-06 53.5 2.6 21 188-208 13-33 (199)
362 1z6g_A Guanylate kinase; struc 92.2 0.055 1.9E-06 54.5 2.4 22 188-209 24-45 (218)
363 2pt5_A Shikimate kinase, SK; a 92.2 0.059 2E-06 51.7 2.6 20 189-208 2-21 (168)
364 1u94_A RECA protein, recombina 92.2 0.19 6.5E-06 54.5 6.8 45 186-232 62-106 (356)
365 2jeo_A Uridine-cytidine kinase 92.1 0.06 2E-06 55.5 2.6 23 187-209 25-47 (245)
366 2vli_A Antibiotic resistance p 92.1 0.053 1.8E-06 52.9 2.1 21 188-208 6-26 (183)
367 1uj2_A Uridine-cytidine kinase 92.1 0.066 2.2E-06 55.5 2.9 24 185-208 20-43 (252)
368 3tqc_A Pantothenate kinase; bi 92.0 0.076 2.6E-06 56.5 3.3 25 184-208 89-113 (321)
369 2i3b_A HCR-ntpase, human cance 92.0 0.062 2.1E-06 52.5 2.4 22 189-210 3-24 (189)
370 4b4t_K 26S protease regulatory 91.9 0.08 2.7E-06 58.7 3.4 104 153-278 172-275 (428)
371 2cdn_A Adenylate kinase; phosp 91.9 0.082 2.8E-06 52.5 3.3 22 187-208 20-41 (201)
372 3a4m_A L-seryl-tRNA(SEC) kinas 91.9 0.072 2.4E-06 55.4 2.9 22 187-208 4-25 (260)
373 2f6r_A COA synthase, bifunctio 91.8 0.076 2.6E-06 55.9 3.1 23 186-208 74-96 (281)
374 1qf9_A UMP/CMP kinase, protein 91.8 0.068 2.3E-06 52.7 2.6 21 188-208 7-27 (194)
375 3p32_A Probable GTPase RV1496/ 91.8 0.12 4E-06 56.6 4.7 35 174-208 66-100 (355)
376 3ney_A 55 kDa erythrocyte memb 91.8 0.072 2.5E-06 52.1 2.6 24 186-209 18-41 (197)
377 2pbr_A DTMP kinase, thymidylat 91.8 0.069 2.4E-06 52.7 2.6 21 189-209 2-22 (195)
378 1rj9_A FTSY, signal recognitio 91.8 0.083 2.8E-06 56.0 3.3 23 186-208 101-123 (304)
379 3l0o_A Transcription terminati 91.8 0.19 6.4E-06 53.9 5.8 38 189-228 177-216 (427)
380 1pgv_A TMD-1, tropomodulin TMD 91.7 0.18 6.1E-06 49.1 5.3 61 760-820 40-111 (197)
381 1ex7_A Guanylate kinase; subst 91.7 0.065 2.2E-06 52.0 2.2 21 188-208 2-22 (186)
382 4b4t_J 26S protease regulatory 91.7 0.15 5.1E-06 55.6 5.2 25 186-210 181-205 (405)
383 3nwj_A ATSK2; P loop, shikimat 91.7 0.068 2.3E-06 54.8 2.4 21 188-208 49-69 (250)
384 2plr_A DTMP kinase, probable t 91.6 0.074 2.5E-06 53.4 2.6 22 188-209 5-26 (213)
385 3b85_A Phosphate starvation-in 91.6 0.075 2.6E-06 52.9 2.6 22 188-209 23-44 (208)
386 1zd8_A GTP:AMP phosphotransfer 91.6 0.077 2.6E-06 53.9 2.7 22 187-208 7-28 (227)
387 2onk_A Molybdate/tungstate ABC 91.5 0.084 2.9E-06 53.9 2.8 22 188-209 25-46 (240)
388 2f1r_A Molybdopterin-guanine d 91.4 0.049 1.7E-06 52.1 1.0 22 188-209 3-24 (171)
389 2pcj_A ABC transporter, lipopr 91.4 0.081 2.8E-06 53.4 2.6 22 188-209 31-52 (224)
390 1aky_A Adenylate kinase; ATP:A 91.4 0.089 3E-06 53.1 2.9 21 188-208 5-25 (220)
391 1qvr_A CLPB protein; coiled co 91.4 0.24 8.1E-06 61.4 7.3 23 187-209 588-610 (854)
392 3e70_C DPA, signal recognition 91.4 0.14 4.7E-06 54.9 4.5 25 185-209 127-151 (328)
393 1s96_A Guanylate kinase, GMP k 91.3 0.082 2.8E-06 53.1 2.6 24 186-209 15-38 (219)
394 3lnc_A Guanylate kinase, GMP k 91.3 0.071 2.4E-06 54.3 2.1 21 188-208 28-48 (231)
395 2pez_A Bifunctional 3'-phospho 91.3 0.094 3.2E-06 50.9 2.9 22 188-209 6-27 (179)
396 1vht_A Dephospho-COA kinase; s 91.3 0.084 2.9E-06 53.2 2.6 21 188-208 5-25 (218)
397 1sgw_A Putative ABC transporte 91.2 0.083 2.9E-06 52.7 2.5 23 188-210 36-58 (214)
398 1gtv_A TMK, thymidylate kinase 91.2 0.049 1.7E-06 54.8 0.8 20 189-208 2-21 (214)
399 2wwf_A Thymidilate kinase, put 91.2 0.086 3E-06 52.8 2.6 23 187-209 10-32 (212)
400 3gqb_B V-type ATP synthase bet 91.2 0.12 4.2E-06 56.8 3.9 90 190-279 150-262 (464)
401 3tif_A Uncharacterized ABC tra 91.2 0.089 3E-06 53.6 2.7 22 188-209 32-53 (235)
402 4b4t_H 26S protease regulatory 91.1 0.18 6E-06 55.9 5.1 90 168-279 213-313 (467)
403 3rfe_A Platelet glycoprotein I 91.1 0.27 9.3E-06 44.5 5.6 55 764-820 11-68 (130)
404 2ck3_A ATP synthase subunit al 91.1 0.26 8.9E-06 55.1 6.4 91 190-280 165-274 (510)
405 2cbz_A Multidrug resistance-as 91.1 0.094 3.2E-06 53.5 2.7 23 188-210 32-54 (237)
406 2px0_A Flagellar biosynthesis 91.0 0.09 3.1E-06 55.6 2.6 23 186-208 104-126 (296)
407 1nn5_A Similar to deoxythymidy 91.0 0.092 3.1E-06 52.8 2.6 22 187-208 9-30 (215)
408 2qe7_A ATP synthase subunit al 90.9 0.32 1.1E-05 54.3 6.9 87 190-280 165-266 (502)
409 4b4t_I 26S protease regulatory 90.9 0.11 3.8E-06 56.9 3.3 105 153-279 182-286 (437)
410 2z0h_A DTMP kinase, thymidylat 90.8 0.1 3.4E-06 51.6 2.6 21 189-209 2-22 (197)
411 3gfo_A Cobalt import ATP-bindi 90.8 0.1 3.4E-06 54.5 2.7 22 188-209 35-56 (275)
412 2ehv_A Hypothetical protein PH 90.8 0.098 3.3E-06 54.1 2.6 22 187-208 30-51 (251)
413 2v54_A DTMP kinase, thymidylat 90.8 0.1 3.4E-06 52.0 2.6 22 188-209 5-26 (204)
414 1ji0_A ABC transporter; ATP bi 90.8 0.1 3.5E-06 53.3 2.7 22 188-209 33-54 (240)
415 2ga8_A Hypothetical 39.9 kDa p 90.8 0.17 5.7E-06 54.2 4.3 25 185-209 22-46 (359)
416 1m7g_A Adenylylsulfate kinase; 90.8 0.1 3.5E-06 52.3 2.6 23 187-209 25-47 (211)
417 1sq5_A Pantothenate kinase; P- 90.8 0.096 3.3E-06 56.0 2.6 24 186-209 79-102 (308)
418 2x8a_A Nuclear valosin-contain 90.8 0.094 3.2E-06 54.9 2.4 21 190-210 47-67 (274)
419 3fb4_A Adenylate kinase; psych 90.8 0.1 3.5E-06 52.5 2.6 20 189-208 2-21 (216)
420 1b0u_A Histidine permease; ABC 90.7 0.1 3.5E-06 54.1 2.7 22 188-209 33-54 (262)
421 2pze_A Cystic fibrosis transme 90.7 0.11 3.6E-06 52.8 2.7 23 188-210 35-57 (229)
422 4b4t_M 26S protease regulatory 90.7 0.14 4.7E-06 56.9 3.8 89 168-278 185-284 (434)
423 2r9v_A ATP synthase subunit al 90.7 0.45 1.5E-05 53.1 7.8 87 190-280 178-279 (515)
424 1zu4_A FTSY; GTPase, signal re 90.7 0.17 5.9E-06 54.0 4.4 23 186-208 104-126 (320)
425 2olj_A Amino acid ABC transpor 90.7 0.11 3.6E-06 53.9 2.7 22 188-209 51-72 (263)
426 3tlx_A Adenylate kinase 2; str 90.6 0.15 5E-06 52.4 3.7 23 186-208 28-50 (243)
427 2yhs_A FTSY, cell division pro 90.6 0.16 5.4E-06 57.0 4.2 23 187-209 293-315 (503)
428 1pgv_A TMD-1, tropomodulin TMD 90.6 0.13 4.6E-06 50.0 3.2 110 781-890 38-167 (197)
429 3ake_A Cytidylate kinase; CMP 90.6 0.11 3.7E-06 51.9 2.6 20 189-208 4-23 (208)
430 1g6h_A High-affinity branched- 90.5 0.11 3.7E-06 53.7 2.7 22 188-209 34-55 (257)
431 1np6_A Molybdopterin-guanine d 90.5 0.12 4E-06 49.6 2.7 23 187-209 6-28 (174)
432 1a7j_A Phosphoribulokinase; tr 90.5 0.1 3.6E-06 55.0 2.6 23 186-208 4-26 (290)
433 3dl0_A Adenylate kinase; phosp 90.5 0.11 3.8E-06 52.2 2.6 20 189-208 2-21 (216)
434 3umf_A Adenylate kinase; rossm 90.5 0.13 4.3E-06 51.4 2.9 25 185-209 27-51 (217)
435 3r20_A Cytidylate kinase; stru 90.5 0.11 3.9E-06 52.3 2.6 22 187-208 9-30 (233)
436 4g1u_C Hemin import ATP-bindin 90.5 0.11 3.8E-06 53.9 2.7 22 188-209 38-59 (266)
437 3b9q_A Chloroplast SRP recepto 90.5 0.11 3.7E-06 55.1 2.6 23 187-209 100-122 (302)
438 1vpl_A ABC transporter, ATP-bi 90.4 0.11 3.9E-06 53.4 2.7 22 188-209 42-63 (256)
439 1zak_A Adenylate kinase; ATP:A 90.4 0.12 4.1E-06 52.2 2.8 21 188-208 6-26 (222)
440 2p5t_B PEZT; postsegregational 90.4 0.16 5.6E-06 52.4 3.9 23 186-208 31-53 (253)
441 1mv5_A LMRA, multidrug resista 90.4 0.12 4E-06 53.0 2.7 23 188-210 29-51 (243)
442 2ff7_A Alpha-hemolysin translo 90.3 0.12 4E-06 53.1 2.7 22 188-209 36-57 (247)
443 2d2e_A SUFC protein; ABC-ATPas 90.3 0.11 3.9E-06 53.4 2.6 22 188-209 30-51 (250)
444 1ixz_A ATP-dependent metallopr 90.2 0.11 3.8E-06 53.8 2.4 21 190-210 52-72 (254)
445 2ghi_A Transport protein; mult 90.2 0.12 4.2E-06 53.4 2.7 23 188-210 47-69 (260)
446 2c61_A A-type ATP synthase non 90.2 0.24 8.3E-06 55.0 5.1 90 190-279 155-260 (469)
447 2qi9_C Vitamin B12 import ATP- 90.2 0.12 4.2E-06 52.9 2.7 23 188-210 27-49 (249)
448 2ixe_A Antigen peptide transpo 90.1 0.12 4.2E-06 53.7 2.7 23 188-210 46-68 (271)
449 2zu0_C Probable ATP-dependent 90.1 0.12 4.2E-06 53.7 2.6 22 188-209 47-68 (267)
450 2yz2_A Putative ABC transporte 90.1 0.13 4.3E-06 53.6 2.7 22 188-209 34-55 (266)
451 1gvn_B Zeta; postsegregational 90.0 0.15 5E-06 53.8 3.2 23 186-208 32-54 (287)
452 2w58_A DNAI, primosome compone 90.0 0.56 1.9E-05 46.3 7.4 51 371-423 37-89 (202)
453 3d3q_A TRNA delta(2)-isopenten 90.0 0.13 4.4E-06 54.9 2.6 21 188-208 8-28 (340)
454 1j8m_F SRP54, signal recogniti 90.0 0.21 7.3E-06 52.7 4.4 22 187-208 98-119 (297)
455 2nq2_C Hypothetical ABC transp 90.0 0.13 4.5E-06 52.9 2.7 23 188-210 32-54 (253)
456 2zan_A Vacuolar protein sortin 89.9 2.1 7.2E-05 48.2 12.9 46 364-409 135-190 (444)
457 3hjn_A DTMP kinase, thymidylat 89.9 0.76 2.6E-05 45.1 8.1 33 189-223 2-34 (197)
458 3n70_A Transport activator; si 89.9 0.17 5.7E-06 47.1 3.1 46 364-409 2-47 (145)
459 2ihy_A ABC transporter, ATP-bi 89.8 0.14 4.6E-06 53.6 2.7 23 188-210 48-70 (279)
460 3hu3_A Transitional endoplasmi 89.7 1.8 6E-05 49.2 12.0 153 364-539 205-385 (489)
461 3be4_A Adenylate kinase; malar 89.7 0.13 4.3E-06 51.8 2.3 21 188-208 6-26 (217)
462 2xb4_A Adenylate kinase; ATP-b 89.6 0.14 4.9E-06 51.7 2.6 20 189-208 2-21 (223)
463 1tue_A Replication protein E1; 89.6 0.18 6.1E-06 49.1 3.0 37 173-210 45-81 (212)
464 1q3t_A Cytidylate kinase; nucl 89.5 0.16 5.6E-06 51.8 3.0 24 185-208 14-37 (236)
465 1yrb_A ATP(GTP)binding protein 89.5 0.18 6E-06 52.5 3.3 23 186-208 13-35 (262)
466 2v9p_A Replication protein E1; 89.4 0.15 5.2E-06 53.7 2.6 24 186-209 125-148 (305)
467 1cr0_A DNA primase/helicase; R 89.4 0.38 1.3E-05 51.1 5.9 51 188-242 36-87 (296)
468 1e4v_A Adenylate kinase; trans 89.4 0.15 5.2E-06 51.1 2.6 20 189-208 2-21 (214)
469 2hf9_A Probable hydrogenase ni 89.3 0.17 5.8E-06 51.2 3.0 24 186-209 37-60 (226)
470 3oaa_A ATP synthase subunit al 89.3 0.6 2E-05 51.9 7.3 87 190-280 165-266 (513)
471 2xxa_A Signal recognition part 89.3 0.24 8.1E-06 55.3 4.3 24 185-208 98-121 (433)
472 2og2_A Putative signal recogni 89.3 0.15 5.2E-06 55.2 2.6 23 187-209 157-179 (359)
473 2vp4_A Deoxynucleoside kinase; 89.2 0.15 5E-06 51.9 2.3 24 186-209 19-42 (230)
474 1iy2_A ATP-dependent metallopr 89.2 0.14 4.9E-06 53.8 2.4 21 190-210 76-96 (278)
475 1vma_A Cell division protein F 89.2 0.18 6.3E-06 53.3 3.2 23 186-208 103-125 (306)
476 2wsm_A Hydrogenase expression/ 89.2 0.17 5.8E-06 51.0 2.8 24 186-209 29-52 (221)
477 4b4t_J 26S protease regulatory 89.2 0.4 1.4E-05 52.3 5.8 45 365-409 150-205 (405)
478 4b4t_L 26S protease subunit RP 89.1 0.49 1.7E-05 52.5 6.6 46 364-409 182-238 (437)
479 2c9o_A RUVB-like 1; hexameric 89.1 0.3 1E-05 55.5 5.0 36 175-210 51-86 (456)
480 2gno_A DNA polymerase III, gam 89.0 1.9 6.5E-05 45.5 10.9 143 370-539 4-152 (305)
481 2pjz_A Hypothetical protein ST 88.9 0.18 6E-06 52.2 2.7 22 188-209 31-52 (263)
482 1ak2_A Adenylate kinase isoenz 88.8 0.18 6.1E-06 51.4 2.6 21 188-208 17-37 (233)
483 2wji_A Ferrous iron transport 88.7 0.19 6.4E-06 47.9 2.6 22 189-210 5-26 (165)
484 1oix_A RAS-related protein RAB 88.7 0.18 6.3E-06 49.4 2.6 23 188-210 30-52 (191)
485 3kl4_A SRP54, signal recogniti 88.7 0.25 8.4E-06 54.9 3.8 23 186-208 96-118 (433)
486 2bbs_A Cystic fibrosis transme 88.5 0.19 6.5E-06 52.8 2.6 23 188-210 65-87 (290)
487 2zej_A Dardarin, leucine-rich 88.5 0.19 6.7E-06 48.8 2.6 21 190-210 5-25 (184)
488 3mfy_A V-type ATP synthase alp 88.4 0.48 1.6E-05 53.3 5.9 45 190-238 230-275 (588)
489 1svm_A Large T antigen; AAA+ f 88.4 0.32 1.1E-05 53.1 4.5 27 183-209 165-191 (377)
490 3end_A Light-independent proto 88.4 0.21 7E-06 53.5 2.9 24 185-208 39-62 (307)
491 1ofh_A ATP-dependent HSL prote 88.4 0.23 7.9E-06 53.2 3.3 22 188-209 51-72 (310)
492 3crm_A TRNA delta(2)-isopenten 88.4 0.2 6.7E-06 53.1 2.6 21 188-208 6-26 (323)
493 1ls1_A Signal recognition part 88.3 0.19 6.6E-06 53.0 2.6 22 187-208 98-119 (295)
494 3nh6_A ATP-binding cassette SU 88.3 0.14 4.9E-06 54.0 1.6 22 188-209 81-102 (306)
495 3lw7_A Adenylate kinase relate 88.2 2.8 9.6E-05 39.8 10.9 19 388-406 3-21 (179)
496 1nlf_A Regulatory protein REPA 88.2 0.2 6.9E-06 52.7 2.6 22 187-208 30-51 (279)
497 1fx0_A ATP synthase alpha chai 88.1 0.35 1.2E-05 54.1 4.5 85 190-280 166-267 (507)
498 1ltq_A Polynucleotide kinase; 88.0 0.21 7E-06 53.3 2.6 22 188-209 3-24 (301)
499 3thx_A DNA mismatch repair pro 88.0 0.52 1.8E-05 57.9 6.4 21 187-207 662-682 (934)
500 1fzq_A ADP-ribosylation factor 88.0 0.33 1.1E-05 47.0 3.9 25 186-210 15-39 (181)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.7e-33 Score=331.95 Aligned_cols=290 Identities=16% Similarity=0.196 Sum_probs=217.1
Q ss_pred hhhhhhHHHhhhcC-CCCCceEeEEccCCCChhhHHHHhcC--CcccccCCcceeEEEcCCCC--CHHHHHHHHHHHhCC
Q 048834 170 NDEVKGLAELILSD-YPSPLHIPVVDVAGSAETPELWKIYS--CDDIKNHFQCRAWFLVPPRL--DKRELAINILNQFAP 244 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~-~~~~~vi~i~G~gGiGKTtla~~v~~--~~~~~~~F~~~~~~~~s~~~--~~~~l~~~i~~~~~~ 244 (1108)
+.+.++|.++|..+ ..+++||+|||||||||||||+++|+ |.+++.+|+.++||++++.+ +...+++.|++++..
T Consensus 134 ~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~ 213 (549)
T 2a5y_B 134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKS 213 (549)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 57888999998765 45789999999999999999999998 77899999999999999985 899999999999986
Q ss_pred Cch-----hHHHHhhcchHHHHHHHccCC-eEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhccccccc
Q 048834 245 TDV-----ELEEKLLESPQTVVHNYLIHK-RYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRNLNFFG 318 (1108)
Q Consensus 245 ~~~-----~~~~~~~~~l~~~l~~~l~~k-r~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~~~~~ 318 (1108)
... ..+..+.+.++..+++.|.+| |+||||||||+.+++ .+.. .+|||||||||++.|+..++.. .
T Consensus 214 ~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~--~ 285 (549)
T 2a5y_B 214 EDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQT--C 285 (549)
T ss_dssp TSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSC--E
T ss_pred CcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCC--C
Confidence 521 111112344678899999996 999999999998876 2222 2799999999999999877532 1
Q ss_pred cccchhHHhhhccccccccccccCCCCcccccCCCccccccCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCCh
Q 048834 319 GDLNLSFKEMKARYPLHEAVVVRNDDDVNTIRPHISVAEILGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSG 398 (1108)
Q Consensus 319 ~~~~~~~l~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~G 398 (1108)
.+|++++|+.+++|.||...||..
T Consensus 286 ~~~~l~~L~~~ea~~Lf~~~a~~~-------------------------------------------------------- 309 (549)
T 2a5y_B 286 EFIEVTSLEIDECYDFLEAYGMPM-------------------------------------------------------- 309 (549)
T ss_dssp EEEECCCCCHHHHHHHHHHTSCCC--------------------------------------------------------
T ss_pred eEEECCCCCHHHHHHHHHHHhcCC--------------------------------------------------------
Confidence 467777777777777776554321
Q ss_pred HHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCC
Q 048834 399 KTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVH 478 (1108)
Q Consensus 399 KT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~ 478 (1108)
T Consensus 310 -------------------------------------------------------------------------------- 309 (549)
T 2a5y_B 310 -------------------------------------------------------------------------------- 309 (549)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHH
Q 048834 479 LPGAWYELQRIFSPNTSSSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKK 558 (1108)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~ 558 (1108)
..++.+...+.+|+++
T Consensus 310 ----------------------------------------------------------------~~~~~~~~~~~~I~~~ 325 (549)
T 2a5y_B 310 ----------------------------------------------------------------PVGEKEEDVLNKTIEL 325 (549)
T ss_dssp ----------------------------------------------------------------C--CHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCchhHHHHHHHHHHH
Confidence 0012344566789999
Q ss_pred cCCchhHHHHHHHHhhcCCCCChhHHHHHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCchhhhhHHhhccc
Q 048834 559 CGGLPLAICVLGGLLSTNRQIQNSDWEKVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDNLDASSIWGLGYK 638 (1108)
Q Consensus 559 ~~glPlal~~~~~~l~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~ 638 (1108)
|+|+|+|++.+|+.++.+ . |..+ +.+.. ..... ... .+..++.+||+
T Consensus 326 c~GlPLAl~~~g~~l~~~-~-----w~~~-~~l~~----------~l~~~----~~~------------~i~~~l~~Sy~ 372 (549)
T 2a5y_B 326 SSGNPATLMMFFKSCEPK-T-----FEKM-AQLNN----------KLESR----GLV------------GVECITPYSYK 372 (549)
T ss_dssp HTTCHHHHHHHHTTCCSS-S-----HHHH-HHHHH----------HHHHH----CSS------------TTCCCSSSSSS
T ss_pred hCCChHHHHHHHHHhccc-h-----HHHH-HHhHH----------Hhhcc----cHH------------HHHHHHhcccc
Confidence 999999999999988654 2 4333 22111 00000 011 57778899999
Q ss_pred cchHhHHHHHh-----------hhccCCCCcccchHHHHHHHHhc--CcccCCCCCCCCHHHHHHHHHHHHHHccchhhh
Q 048834 639 YLSAHLKACLH-----------YLCLFPKSHEIPVRRLLQLWLAE--RFVTPSEGEEMTPEDRARKDFEQLEQRNMIEVV 705 (1108)
Q Consensus 639 ~l~~~l~~~~~-----------~~~~f~~~~~~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 705 (1108)
.||..++.||. +|++||+++.++ +..|+++ ||+....... ..++.+. ++.+|+++++++..
T Consensus 373 ~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~-~~~~~~~-~l~~L~~rsLl~~~ 446 (549)
T 2a5y_B 373 SLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ-LDDEVAD-RLKRLSKRGALLSG 446 (549)
T ss_dssp SHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC-CTHHHHH-HHHHTTTBSSCSEE
T ss_pred cccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCC-CHHHHHH-HHHHHHHcCCeeEe
Confidence 99999999999 999999999887 7899999 8897665333 5677777 99999999998865
Q ss_pred h
Q 048834 706 K 706 (1108)
Q Consensus 706 ~ 706 (1108)
.
T Consensus 447 ~ 447 (549)
T 2a5y_B 447 K 447 (549)
T ss_dssp E
T ss_pred c
Confidence 4
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=8e-29 Score=293.26 Aligned_cols=136 Identities=12% Similarity=0.132 Sum_probs=107.7
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcc-eeEEEcCCCCCHHHHHHHHHHHhCC---C
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQC-RAWFLVPPRLDKRELAINILNQFAP---T 245 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~-~~~~~~s~~~~~~~l~~~i~~~~~~---~ 245 (1108)
+.+.++|.++|... ...+||+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..|++.+.. .
T Consensus 134 e~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~ 212 (1221)
T 1vt4_I 134 LQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212 (1221)
T ss_dssp HHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcc
Confidence 57788888888753 34899999999999999999999988889999997 8899999999998888887774321 1
Q ss_pred ---chh---HHHHhhcchHHHHHHHc---cCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhcc
Q 048834 246 ---DVE---LEEKLLESPQTVVHNYL---IHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRN 313 (1108)
Q Consensus 246 ---~~~---~~~~~~~~l~~~l~~~l---~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~ 313 (1108)
..+ ....+.+.+...+++.| .+||+||||||||+.++|+.+. +|||||||||++.++..+.
T Consensus 213 ~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp STTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcC
Confidence 000 01123445566677765 7899999999999999998752 7999999999999986443
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=4.2e-25 Score=293.22 Aligned_cols=288 Identities=14% Similarity=0.200 Sum_probs=206.9
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccc-ccCCc-ceeEEEcCCCCC--HHHHHHHHHHHhCCC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDI-KNHFQ-CRAWFLVPPRLD--KRELAINILNQFAPT 245 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~-~~~F~-~~~~~~~s~~~~--~~~l~~~i~~~~~~~ 245 (1108)
+.+.++|.++|...+...++|+|+|||||||||||+++|++.++ ..+|. .+.|+++++..+ ....++.++..+...
T Consensus 130 ~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~ 209 (1249)
T 3sfz_A 130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209 (1249)
T ss_dssp HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhh
Confidence 57888999999877788999999999999999999999987654 55565 556999998654 344567777777654
Q ss_pred chh--HHHHhhcchHHHHHHHccCC--eEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhc-cccccccc
Q 048834 246 DVE--LEEKLLESPQTVVHNYLIHK--RYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHR-NLNFFGGD 320 (1108)
Q Consensus 246 ~~~--~~~~~~~~l~~~l~~~l~~k--r~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~-~~~~~~~~ 320 (1108)
... ....+.+.+...++..|.+| |+||||||||+..+|+.+ ++|||||||||++.|+..+ +.. ..
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~---~~ 279 (1249)
T 3sfz_A 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPK---HV 279 (1249)
T ss_dssp CTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCB---CC
T ss_pred cccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCc---eE
Confidence 321 11123455677788888777 999999999999988764 6899999999999998543 222 45
Q ss_pred cchhH-HhhhccccccccccccCCCCcccccCCCccccccCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChH
Q 048834 321 LNLSF-KEMKARYPLHEAVVVRNDDDVNTIRPHISVAEILGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGK 399 (1108)
Q Consensus 321 ~~~~~-l~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GK 399 (1108)
+.+.. |+.+++|.||...++
T Consensus 280 ~~~~~~l~~~~a~~l~~~~~~----------------------------------------------------------- 300 (1249)
T 3sfz_A 280 VPVESGLGREKGLEILSLFVN----------------------------------------------------------- 300 (1249)
T ss_dssp EECCSSCCHHHHHHHHHHHHT-----------------------------------------------------------
T ss_pred EEecCCCCHHHHHHHHHHhhC-----------------------------------------------------------
Confidence 55553 555666555532211
Q ss_pred HHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC
Q 048834 400 TTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL 479 (1108)
Q Consensus 400 T~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~ 479 (1108)
T Consensus 301 -------------------------------------------------------------------------------- 300 (1249)
T 3sfz_A 301 -------------------------------------------------------------------------------- 300 (1249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHc
Q 048834 480 PGAWYELQRIFSPNTSSSGSRVILLTREAFVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKC 559 (1108)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 559 (1108)
.. .+.+...+.+|+++|
T Consensus 301 -------------------------------------------------------------~~--~~~~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 301 -------------------------------------------------------------MK--KEDLPAEAHSIIKEC 317 (1249)
T ss_dssp -------------------------------------------------------------SC--STTCCTHHHHHHHHT
T ss_pred -------------------------------------------------------------CC--hhhCcHHHHHHHHHh
Confidence 00 011122356789999
Q ss_pred CCchhHHHHHHHHhhcCCCCChhHHHHHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCchhhhhHHhhcccc
Q 048834 560 GGLPLAICVLGGLLSTNRQIQNSDWEKVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDNLDASSIWGLGYKY 639 (1108)
Q Consensus 560 ~glPlal~~~~~~l~~~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 639 (1108)
+|+|+|++.+|.+++.++. .|...++.+...... ............+..++.+||+.
T Consensus 318 ~glPLal~~~~~~l~~~~~----~~~~~l~~l~~~~~~-------------------~~~~~~~~~~~~~~~~l~~s~~~ 374 (1249)
T 3sfz_A 318 KGSPLVVSLIGALLRDFPN----RWAYYLRQLQNKQFK-------------------RIRKSSSYDYEALDEAMSISVEM 374 (1249)
T ss_dssp TTCHHHHHHHHHHHHHSSS----CHHHHHHHHHSCCCC-------------------CSSCTTCTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhcChh----HHHHHHHHHhhhhhh-------------------hcccccccchHHHHHHHHHHHHh
Confidence 9999999999999988754 466666554331100 00001111112688999999999
Q ss_pred chHhHHHHHhhhccCCCCcccchHHHHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHccchhhh
Q 048834 640 LSAHLKACLHYLCLFPKSHEIPVRRLLQLWLAERFVTPSEGEEMTPEDRARKDFEQLEQRNMIEVV 705 (1108)
Q Consensus 640 l~~~l~~~~~~~~~f~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 705 (1108)
|+...+.||+++++||+++.++...++.+|..+ .+.+..++.+|+++++++..
T Consensus 375 L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------------~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 375 LREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------------TEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp SCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------------HHHHHHHHHHHHHTTSCEEE
T ss_pred CCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------------HHHHHHHHHHHHhccceEEe
Confidence 999999999999999999999999999999632 34567788888888887754
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.3e-24 Score=263.51 Aligned_cols=293 Identities=14% Similarity=0.094 Sum_probs=239.5
Q ss_pred ccCCCeeEEEEeCCCCCCC------------------Cchhhc--CCCCccEEecCCcc-ccccccccCCCCCCcEEecc
Q 048834 757 RRGYRLLRVLDLEGVYKPV------------------LPETVG--KLQLLRYFGLRWTF-LDSIPESVGDLPCLETLDLK 815 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~------------------lp~~i~--~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~L~ 815 (1108)
+.++++|++|+|++|.+.. +|+.++ ++.+|++|++++|. ...+|..++++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 5678899999999999988 999999 99999999999996 55799999999999999999
Q ss_pred CCc-Cc--cCChhhccc------cccCEEEeccccccccccCCc--cccCcccccccccccccCCCCChhhhccCcCCce
Q 048834 816 HTN-IT--SLPKSIWKV------KTLRHLYMNDIYLQMSVQKPF--VKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKK 884 (1108)
Q Consensus 816 ~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~~~~~--~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~ 884 (1108)
+|. ++ .+|..++++ ++|++|++++|.+. . .|. .++++++|+.|++..+.....++ .+..+++|+.
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T--FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S--CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c--cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 997 88 499999887 99999999999876 3 455 78999999999998887664566 8899999999
Q ss_pred eeeeecccchhhHHHHHhhcCC-CcEEEEEecCCCCCCCccccCCCCCccCccceEeeccc-----CCCCCCC----CCC
Q 048834 885 LGLTCHIASLGQIAKWIQDLIS-LESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKL-----PEPLKLD----KLP 954 (1108)
Q Consensus 885 L~l~~~~~~~~~lp~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-----~~~~~~~----~~~ 954 (1108)
|+++++... .+|.++..+++ |+.|++++|.....+..+ ....+++|+.|+++++- |..+... ..+
T Consensus 358 L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 358 LNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIF---DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCC---CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred EECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhh---hhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 999988764 78888999999 999999998876433221 22234588999987762 3322200 023
Q ss_pred CCcceEEEEeccCCCCCccc-cccccccceeeeccccccCceeeeCCC--------CCCcccEEEeccCCCCCceeeCCC
Q 048834 955 PNLRILTLSLSYLSEDPMPV-LGQLKELNILRLFAHSFMGEEMTCGDG--------GFPKLRVLKLWVQKELREWTIGKE 1025 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~l~~lp~~~~ 1025 (1108)
++|+.|++++|.+. .+|.. +..+++|+.|+|++|.+.. ++.... .+++|+.|++++|. +..+|..+.
T Consensus 433 ~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~ 508 (636)
T 4eco_A 433 INVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFR 508 (636)
T ss_dssp CCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSB--CCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGS
T ss_pred CCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCC--cCHHHhccccccccccCCccEEECcCCc-CCccChhhh
Confidence 58999999999988 55554 4569999999999998873 443222 23399999999997 668998876
Q ss_pred --cccccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 1026 --AMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1026 --~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
.+++|+.|++++|....+|..+.++++|+.|++++|+
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc
Confidence 8999999999999988899999999999999997755
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=5.7e-24 Score=261.08 Aligned_cols=293 Identities=12% Similarity=0.057 Sum_probs=178.5
Q ss_pred CCCeeEEEEeCCCC-CCCCchhhcCCCCccEEecCCcc-cc--ccccccCCCC-------CCcEEeccCCcCccCCh--h
Q 048834 759 GYRLLRVLDLEGVY-KPVLPETVGKLQLLRYFGLRWTF-LD--SIPESVGDLP-------CLETLDLKHTNITSLPK--S 825 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~-~~~lp~~i~~l~~L~~L~l~~~~-i~--~lp~~i~~l~-------~L~~L~L~~~~l~~lp~--~ 825 (1108)
++++|++|+|++|. ...+|..+++|++|++|++++|. +. .+|..++++. +|++|+|++|.++.+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 45667777777765 45566677777777777777765 55 3666555444 77777777776667776 6
Q ss_pred hccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcC-CceeeeeecccchhhHHHHHhhc
Q 048834 826 IWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRG-LKKLGLTCHIASLGQIAKWIQDL 904 (1108)
Q Consensus 826 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~lp~~l~~l 904 (1108)
++++++|++|++++|.+. .. | .++.+++|+.|++..+... .++..+..+++ |+.|+++.+... .+|..+..+
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~l--p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~ 641 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HL--E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAK 641 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BC--C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTT
T ss_pred hhcCCCCCEEECCCCCcc-cc--h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhcc
Confidence 777777777777776654 22 3 4667777777776666554 55666666666 777777766543 555554444
Q ss_pred C--CCcEEEEEecCCCCCCCccc-cCCCCCccCccceEeecccCCCCC--CCCCCCCcceEEEEeccCCCCCccccc---
Q 048834 905 I--SLESLRLRSLNDFGEPSDLV-IGPLNNHRALNELYLLGKLPEPLK--LDKLPPNLRILTLSLSYLSEDPMPVLG--- 976 (1108)
Q Consensus 905 ~--~L~~L~l~~~~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~--- 976 (1108)
+ +|+.|++++|.....++.+. ......+++|+.|+++++--..+. ....+++|+.|+|++|.+. .+|..+.
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 3 37777777666554332221 011113346677777665211111 1112356777777777665 4444332
Q ss_pred -----cccccceeeeccccccCceeeeCCC--CCCcccEEEeccCCCCCceeeCCCcccccceEeecc------cCCCC-
Q 048834 977 -----QLKELNILRLFAHSFMGEEMTCGDG--GFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRC------CKKMK- 1042 (1108)
Q Consensus 977 -----~l~~L~~L~L~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~------c~~l~- 1042 (1108)
.+++|+.|+|++|.+.. ++..+. .+++|+.|++++|. +..+|..+..+++|+.|++++ |....
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~--lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCC--CCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred cccccccCCccEEECCCCCCcc--chHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence 23377777777776653 455554 67777777777775 444676677777777777765 33333
Q ss_pred CCcccCCCCCCCEEEEecCc
Q 048834 1043 KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1043 lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+|..+.++++|+.|++++|+
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSC
T ss_pred ChHHHhcCCCCCEEECCCCC
Confidence 66677777777777777776
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.3e-23 Score=234.03 Aligned_cols=283 Identities=17% Similarity=0.105 Sum_probs=227.6
Q ss_pred ccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEE
Q 048834 757 RRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLY 836 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 836 (1108)
+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+.++++|++|++++|.+..+|. +..+++|++|+
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 3446779999999999999987 999999999999999998886 58999999999999999998877 88999999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|...... ..+..+++|+.|++..+...... .+..+++|+.|+++++... .++. +..+++|+.|.+++|.
T Consensus 139 l~~n~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 139 LGANHNLSDL---SPLSNMTGLNYLTVTESKVKDVT--PIANLTDLYSLSLNYNQIE--DISP-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CTTCTTCCCC---GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECTTSCCC--CCGG-GGGCTTCCEEECCSSC
T ss_pred CCCCCCcccc---cchhhCCCCcEEEecCCCcCCch--hhccCCCCCEEEccCCccc--cccc-ccCCCccceeecccCC
Confidence 9998655433 23888999999998887654332 2788999999999987653 3443 7788999999998876
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCcee
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEM 996 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 996 (1108)
..... .+..+++|+.|+++++--........+++|+.|++++|.+.. + +.+..+++|+.|++++|.+.+ +
T Consensus 211 l~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~--~ 280 (347)
T 4fmz_A 211 ITDIT------PVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD--I 280 (347)
T ss_dssp CCCCG------GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC--C
T ss_pred CCCCc------hhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC--C
Confidence 55432 256788999999988742222223445799999999998764 2 567889999999999998876 3
Q ss_pred eeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 997 TCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 997 ~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
..+..+++|+.|++++|......|..+..+++|+.|++++|+...++. +..+++|+.|++++|+
T Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 346788999999999998655566667789999999999999777655 7889999999999997
No 7
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=250.42 Aligned_cols=362 Identities=15% Similarity=0.056 Sum_probs=220.4
Q ss_pred cccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccccccCC
Q 048834 727 ECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPESVGD 805 (1108)
Q Consensus 727 ~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~i~~ 805 (1108)
..++.+....+.....++..+. .+++|++|+|++|.+..+ |..++.+.+|++|++++|.+..+|.. .
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~----------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDIL----------SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--P 88 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHT----------TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--C
T ss_pred ccccEEECCCCcccccChhhcc----------ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--c
Confidence 5666666666665555544443 455699999999998887 67899999999999999999999987 8
Q ss_pred CCCCcEEeccCCcCcc--CChhhccccccCEEEeccccccccccCCccccCcccc--cccccccccC--CCCChh-----
Q 048834 806 LPCLETLDLKHTNITS--LPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNL--QTLWSLLIGN--KSPPLN----- 874 (1108)
Q Consensus 806 l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L--~~L~~~~~~~--~~~~~~----- 874 (1108)
+++|++|+|++|.++. +|..++++++|++|++++|.+.. ..+..+++| +.|++..+.. ....+.
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK-----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG-----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCcccch-----hhccccccceeeEEEeeccccccccccccccccc
Confidence 9999999999998885 67899999999999999987654 225556666 7776665544 222222
Q ss_pred ---------------------------------------------------hhccCcCCceeeeeecccchhh---HHHH
Q 048834 875 ---------------------------------------------------WLESLRGLKKLGLTCHIASLGQ---IAKW 900 (1108)
Q Consensus 875 ---------------------------------------------------~l~~l~~L~~L~l~~~~~~~~~---lp~~ 900 (1108)
.+..+++|+.|+++.+...... ++..
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 2333444555555444332111 1211
Q ss_pred HhhcCCCcEEEEEecCCCCC-CCccccCCCCCccC--------------------------ccceEeecccCCCCCCCCC
Q 048834 901 IQDLISLESLRLRSLNDFGE-PSDLVIGPLNNHRA--------------------------LNELYLLGKLPEPLKLDKL 953 (1108)
Q Consensus 901 l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~l~~--------------------------L~~l~l~~~~~~~~~~~~~ 953 (1108)
+ ..++|+.|.+++|..... +..+.......+++ |+.|+++++--........
T Consensus 244 ~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 244 V-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp H-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred h-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 1 235788888888765532 22211111123333 4444444442111111134
Q ss_pred CCCcceEEEEeccCCCCCccccccccccceeeeccccccCc-eeeeCCCCCCcccEEEeccCCCCCceeeC-CCcccccc
Q 048834 954 PPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGE-EMTCGDGGFPKLRVLKLWVQKELREWTIG-KEAMPELR 1031 (1108)
Q Consensus 954 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-~~~l~~L~ 1031 (1108)
+++|++|++++|.+.+..|..++.+++|+.|++++|.+.+- .++..++.+++|++|++++|.....+|.. +..+++|+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence 46788888888888777777778888888888888877641 13344567788888888877644336654 45667777
Q ss_pred eEeecccCCCC-CCcccCCCCCCCEEEEecCchHHHHHHHhhccccceeeeCCCCCccccccccchhhhhhhcccccC
Q 048834 1032 ELEIRCCKKMK-KPIELEKLSSLKELTLTDMKKSFEYEVRGSMAKTVNIVINPPQGKNRHWGETESSARHHKLLLESN 1108 (1108)
Q Consensus 1032 ~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1108)
.|++++|.... .|..+. ++|+.|++++|.-.........+.......-+...++......+.....++.|.|.+|
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 77777776554 443332 5666666666653211111112222222222333333222223445566777777665
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2.8e-23 Score=237.16 Aligned_cols=305 Identities=17% Similarity=0.140 Sum_probs=242.0
Q ss_pred ccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCcccccccc-cc
Q 048834 726 IECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIPE-SV 803 (1108)
Q Consensus 726 ~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i 803 (1108)
+..++.+...+......|...+.. +++|++|++++|.+..+|. .+..+++|++|++++|.+..+|. .+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~----------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDS----------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHH----------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCceEEEecCCchhhCChhHhcc----------cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 456666666655555555443333 4559999999999888764 78999999999999999888754 57
Q ss_pred CCCCCCcEEeccCCcCccCChhh-ccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCC
Q 048834 804 GDLPCLETLDLKHTNITSLPKSI-WKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGL 882 (1108)
Q Consensus 804 ~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 882 (1108)
+++++|++|++++|.++.+|..+ +++++|++|++++|.+.... +..++.+++|+.|++..+..... .+..+++|
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L 188 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSL 188 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSCCSBC---CGGGCTTC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCcCCcc---cccccccc
Confidence 89999999999999999999874 89999999999998776432 44578899999999887765433 36678899
Q ss_pred ceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEE
Q 048834 883 KKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTL 962 (1108)
Q Consensus 883 ~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 962 (1108)
+.|+++.+... . +...++|+.|++++|.....+. ..+++|+.|+++++--........+++|+.|++
T Consensus 189 ~~L~l~~n~l~--~----~~~~~~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 189 FHANVSYNLLS--T----LAIPIAVEELDASHNSINVVRG-------PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDL 255 (390)
T ss_dssp SEEECCSSCCS--E----EECCSSCSEEECCSSCCCEEEC-------CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred ceeeccccccc--c----cCCCCcceEEECCCCeeeeccc-------cccccccEEECCCCCCcccHHHcCCCCccEEEC
Confidence 99999876543 1 2345689999998877654322 224789999998874333333344579999999
Q ss_pred EeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC
Q 048834 963 SLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 963 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 1042 (1108)
++|.+.+..|..+..+++|+.|+|++|.+.+ ++.....+|+|++|++++|. +..+|..+..+++|+.|++++|+...
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcc--cCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCccce
Confidence 9999987778889999999999999998866 66667889999999999996 77888888889999999999999877
Q ss_pred CCcccCCCCCCCEEEEecCch
Q 048834 1043 KPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1043 lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
+| +..+++|+.|++++++-
T Consensus 333 ~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 333 LK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CC--CCTTCCCSEEECCSSCE
T ss_pred eC--chhhccCCEEEcCCCCc
Confidence 75 67789999999999985
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.1e-23 Score=261.89 Aligned_cols=293 Identities=25% Similarity=0.230 Sum_probs=160.9
Q ss_pred CCCeeEEEEeCCCCCC-CCchhhcCCCCccEEecCCccccc-cccccCCCCCCcEEeccCCcCc-cCChhhccc-cccCE
Q 048834 759 GYRLLRVLDLEGVYKP-VLPETVGKLQLLRYFGLRWTFLDS-IPESVGDLPCLETLDLKHTNIT-SLPKSIWKV-KTLRH 834 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l-~~L~~ 834 (1108)
++++|++|++++|.+. .+|..++.+++|++|++++|.+.. +|.. .+++|++|++++|.++ .+|..++.+ ++|++
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~ 298 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSE
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCE
Confidence 3444555555555444 234445555555555555554432 2221 4555555555555444 455554443 55555
Q ss_pred EEeccccccccccCCccccCcccccccccccccCCCCChhh-hccCcCCceeeeeecccchhhHHHHHhhcC-CCcEEEE
Q 048834 835 LYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNW-LESLRGLKKLGLTCHIASLGQIAKWIQDLI-SLESLRL 912 (1108)
Q Consensus 835 L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~-~L~~L~l 912 (1108)
|++++|.+.+.. |..++++++|+.|++..+.....++.. +..+++|+.|+++.+... +.+|..+..++ +|+.|++
T Consensus 299 L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 299 LDLSGNHFYGAV--PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS-GELPESLTNLSASLLTLDL 375 (768)
T ss_dssp EECCSSEEEECC--CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE-ECCCTTHHHHTTTCSEEEC
T ss_pred EECcCCcCCCcc--chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC-ccccHHHHhhhcCCcEEEc
Confidence 555555443322 334555555555555554443233322 555555555555554433 34444455554 5555555
Q ss_pred EecCCCCCCCccccCCCCCccCccceEeecc-----cCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeec
Q 048834 913 RSLNDFGEPSDLVIGPLNNHRALNELYLLGK-----LPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLF 987 (1108)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 987 (1108)
++|......+... ....+++|+.|++.++ +|..+ ..+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus 376 s~N~l~~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 376 SSNNFSGPILPNL--CQNPKNTLQELYLQNNGFTGKIPPTL---SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp CSSEEEEECCTTT--TCSTTCCCCEEECCSSEEEEECCGGG---GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cCCCcCCCcChhh--hhcccCCccEEECCCCccccccCHHH---hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 5544332111100 0111455666665543 23222 123567777777777766667777777777777777
Q ss_pred cccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCc
Q 048834 988 AHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+|.+.+. ++..++.+++|++|++++|.....+|..+..+++|+.|++++|.... +|..+..+++|+.|++++|+
T Consensus 451 ~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 451 LNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp SSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcccCc-CCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence 7766553 45556667777777777776555667677777777777777777665 67777777777777777776
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=7.3e-24 Score=263.37 Aligned_cols=292 Identities=24% Similarity=0.211 Sum_probs=183.9
Q ss_pred CeeEEEEeCCCCCC-CCchhhcCCCCccEEecCCcccc-ccccc-cCCCCCCcEEeccCCcCc-cCChhhccc-------
Q 048834 761 RLLRVLDLEGVYKP-VLPETVGKLQLLRYFGLRWTFLD-SIPES-VGDLPCLETLDLKHTNIT-SLPKSIWKV------- 829 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~i~-~lp~~-i~~l~~L~~L~L~~~~l~-~lp~~i~~l------- 829 (1108)
++|++|++++|.+. .+|..++.+.+|++|++++|.+. .+|.. +.++++|++|++++|.+. .+|..++++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 33555555555433 34445555555555555555443 44443 455555555555555444 444444444
Q ss_pred --------------------cccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeee
Q 048834 830 --------------------KTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTC 889 (1108)
Q Consensus 830 --------------------~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 889 (1108)
++|++|++++|...+. .|..++++++|+.|++..+......+..+..+++|+.|+++.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE--CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccc--cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 4455555555444332 244456666666666666655555666666677777777766
Q ss_pred cccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeeccc-----CCCCCCCCCCCCcceEEEEe
Q 048834 890 HIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKL-----PEPLKLDKLPPNLRILTLSL 964 (1108)
Q Consensus 890 ~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-----~~~~~~~~~~~~L~~L~l~~ 964 (1108)
+... +.+|..+..+++|+.|++++|......+. .+..+++|+.|+++++- |.++ ..+++|+.|++++
T Consensus 452 n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 452 NMLE-GEIPQELMYVKTLETLILDFNDLTGEIPS----GLSNCTNLNWISLSNNRLTGEIPKWI---GRLENLAILKLSN 523 (768)
T ss_dssp SCCC-SCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCS
T ss_pred Cccc-CcCCHHHcCCCCceEEEecCCcccCcCCH----HHhcCCCCCEEEccCCccCCcCChHH---hcCCCCCEEECCC
Confidence 6544 45666666677777777776665543222 34556777777776652 2222 2236788888888
Q ss_pred ccCCCCCccccccccccceeeeccccccCcee------------------------------------------------
Q 048834 965 SYLSEDPMPVLGQLKELNILRLFAHSFMGEEM------------------------------------------------ 996 (1108)
Q Consensus 965 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~------------------------------------------------ 996 (1108)
|.+.+.+|..++.+++|+.|++++|.+.+...
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence 88877788888888888888888876653211
Q ss_pred ---------------------eeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCcccCCCCCCC
Q 048834 997 ---------------------TCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLK 1054 (1108)
Q Consensus 997 ---------------------~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~ 1054 (1108)
+..++.+++|+.|++++|.....+|..++.+++|+.|++++|.... +|..+.++++|+
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~ 683 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN 683 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCC
Confidence 1123446778888888887666788888888888888888888886 888888888888
Q ss_pred EEEEecCc
Q 048834 1055 ELTLTDMK 1062 (1108)
Q Consensus 1055 ~L~l~~c~ 1062 (1108)
.|++++|.
T Consensus 684 ~LdLs~N~ 691 (768)
T 3rgz_A 684 ILDLSSNK 691 (768)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 88888887
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=8.2e-23 Score=238.94 Aligned_cols=277 Identities=19% Similarity=0.165 Sum_probs=139.0
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|++|++++|.+..+|+ ++.+++|++|++++|.+..+|. ++++++|++|++++|.++.+|. ++++++|++|++++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS 143 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence 4446666666666555554 5566666666666665555554 5566666666666665555544 55666666666665
Q ss_pred ccccccccCCccccCcccccccc---------------------cccccCCCCChhhhccCcCCceeeeeecccchhhHH
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLW---------------------SLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIA 898 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~---------------------~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp 898 (1108)
|..... + .++.+++|+.|. +..+.... ...+..+++|+.|+++++... .++
T Consensus 144 n~l~~~---~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~--~~~ 215 (466)
T 1o6v_A 144 NTISDI---S-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS--DIT 215 (466)
T ss_dssp EEECCC---G-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC--CCG
T ss_pred CccCCC---h-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC--ChhhccCCCCCEEEecCCccc--ccc
Confidence 544321 1 144444555444 44333221 122444444555554444322 111
Q ss_pred HHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccc
Q 048834 899 KWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQL 978 (1108)
Q Consensus 899 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 978 (1108)
. ++.+++|+.|.+++|..... ..+..+++|+.|+++++--........+++|+.|++++|.+.+. +. +..+
T Consensus 216 ~-~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~-~~~l 286 (466)
T 1o6v_A 216 P-LGILTNLDELSLNGNQLKDI------GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-SP-LAGL 286 (466)
T ss_dssp G-GGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-GG-GTTC
T ss_pred c-ccccCCCCEEECCCCCcccc------hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc-cc-ccCC
Confidence 1 33444555555544433221 12334455555555554211111122234566666665555432 22 5556
Q ss_pred cccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEE
Q 048834 979 KELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTL 1058 (1108)
Q Consensus 979 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l 1058 (1108)
++|+.|++++|.+.+ ++. ++.+++|+.|++++|. +..++. +..+++|+.|++++|....+ ..+..+++|+.|++
T Consensus 287 ~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 287 TALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNN-ISDISP-VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSA 360 (466)
T ss_dssp TTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSC-CSCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEEC
T ss_pred CccCeEEcCCCcccC--chh-hcCCCCCCEEECcCCc-CCCchh-hccCccCCEeECCCCccCCc-hhhccCCCCCEEeC
Confidence 666666666665544 111 4556666666666664 333322 44566666666666654444 24556666666666
Q ss_pred ecCc
Q 048834 1059 TDMK 1062 (1108)
Q Consensus 1059 ~~c~ 1062 (1108)
++|+
T Consensus 361 ~~n~ 364 (466)
T 1o6v_A 361 GHNQ 364 (466)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6665
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.8e-23 Score=249.34 Aligned_cols=305 Identities=17% Similarity=0.141 Sum_probs=243.2
Q ss_pred ccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCccccccccc-c
Q 048834 726 IECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIPES-V 803 (1108)
Q Consensus 726 ~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~-i 803 (1108)
+..++.+...++.....|+..+.. +++|++|+|++|.+..+|+ .++.+.+|++|+|++|.+..+|+. +
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDS----------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHH----------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHcc----------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 345555555555555555444433 4559999999999888765 899999999999999999888654 6
Q ss_pred CCCCCCcEEeccCCcCccCChhh-ccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCC
Q 048834 804 GDLPCLETLDLKHTNITSLPKSI-WKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGL 882 (1108)
Q Consensus 804 ~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 882 (1108)
+++++|++|+|++|.++.+|..+ +++++|++|++++|.+.... +..++.+++|+.|++..+..... .++.+++|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L 194 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNRLTHV---DLSLIPSL 194 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSCCSBC---CGGGCTTC
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCCCCCc---Chhhhhhh
Confidence 89999999999999999998874 89999999999999876433 45588999999999988765443 35678899
Q ss_pred ceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEE
Q 048834 883 KKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTL 962 (1108)
Q Consensus 883 ~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l 962 (1108)
+.|+++++... . +...++|+.|.+++|.....+.. ..++|+.|+++++--........+++|+.|+|
T Consensus 195 ~~L~l~~n~l~--~----l~~~~~L~~L~ls~n~l~~~~~~-------~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~L 261 (597)
T 3oja_B 195 FHANVSYNLLS--T----LAIPIAVEELDASHNSINVVRGP-------VNVELTILKLQHNNLTDTAWLLNYPGLVEVDL 261 (597)
T ss_dssp SEEECCSSCCS--E----EECCTTCSEEECCSSCCCEEECS-------CCSCCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred hhhhcccCccc--c----ccCCchhheeeccCCcccccccc-------cCCCCCEEECCCCCCCCChhhccCCCCCEEEC
Confidence 99999977553 1 33456899999998876543222 23689999998874333333344579999999
Q ss_pred EeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC
Q 048834 963 SLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 963 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 1042 (1108)
++|.+.+..|..++.+++|+.|+|++|.+.+ ++...+.+|+|+.|++++|. +..+|..+..+++|+.|++++|....
T Consensus 262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCCCC
Confidence 9999988888899999999999999999876 67777889999999999997 66888888899999999999999877
Q ss_pred CCcccCCCCCCCEEEEecCch
Q 048834 1043 KPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1043 lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
+| +..+++|+.|++++|+-
T Consensus 339 ~~--~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 339 LK--LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CC--CCTTCCCSEEECCSSCE
T ss_pred cC--hhhcCCCCEEEeeCCCC
Confidence 75 67789999999999984
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.3e-23 Score=255.74 Aligned_cols=314 Identities=16% Similarity=0.147 Sum_probs=222.9
Q ss_pred cccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCC-CCC--CchhhcCCC-------CccEEecCCc
Q 048834 725 YIECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVY-KPV--LPETVGKLQ-------LLRYFGLRWT 794 (1108)
Q Consensus 725 ~~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~-~~~--lp~~i~~l~-------~L~~L~l~~~ 794 (1108)
.+..|+.+....+......+..+ .++++|++|+|++|. +.. +|..++.+. +|++|++++|
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l----------~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFL----------YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGG----------GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCCCCCEEECcCCCCCccChHHH----------hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 45566666555544332222333 345668899998887 663 787776665 8899999888
Q ss_pred ccccccc--ccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCccc-ccccccccccCCCC
Q 048834 795 FLDSIPE--SVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTN-LQTLWSLLIGNKSP 871 (1108)
Q Consensus 795 ~i~~lp~--~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~~~~~~~~~~ 871 (1108)
.+..+|. .++++++|++|+|++|.++.+| .++++++|+.|++++|.+. ..|..+.++++ |+.|++..+... .
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~---~lp~~l~~l~~~L~~L~Ls~N~L~-~ 633 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE---EIPEDFCAFTDQVEGLGFSHNKLK-Y 633 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS---CCCTTSCEECTTCCEEECCSSCCC-S
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc---cchHHHhhccccCCEEECcCCCCC-c
Confidence 8888888 8888889999999888888888 7888888999998888765 34556788888 888888877655 5
Q ss_pred ChhhhccCcC--CceeeeeecccchhhHH---HHHh--hcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecc-
Q 048834 872 PLNWLESLRG--LKKLGLTCHIASLGQIA---KWIQ--DLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGK- 943 (1108)
Q Consensus 872 ~~~~l~~l~~--L~~L~l~~~~~~~~~lp---~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~- 943 (1108)
++..+..+.. |+.|+++.+... +.+| ..+. .+++|+.|++++|.....+... ...+++|+.|+++++
T Consensus 634 lp~~~~~~~~~~L~~L~Ls~N~l~-g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~----~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 634 IPNIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL----FATGSPISTIILSNNL 708 (876)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTT-TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHH----HHTTCCCSEEECCSCC
T ss_pred CchhhhccccCCCCEEECcCCcCC-CccccchhhhccccCCCcCEEEccCCcCCccCHHH----HccCCCCCEEECCCCc
Confidence 6666665543 888888877553 2222 1222 2347888888887766433221 224677888888765
Q ss_pred ---cCCCCCCC-----CCCCCcceEEEEeccCCCCCccccc--cccccceeeeccccccCceeeeCCCCCCcccEEEecc
Q 048834 944 ---LPEPLKLD-----KLPPNLRILTLSLSYLSEDPMPVLG--QLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWV 1013 (1108)
Q Consensus 944 ---~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 1013 (1108)
+|...... ..+++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+.+ ++..++.+++|+.|++++
T Consensus 709 L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCC
T ss_pred CCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCC
Confidence 23222111 11237888888888877 6777776 88889999998888876 666777888899988876
Q ss_pred ------CCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCch
Q 048834 1014 ------QKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1014 ------~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
|.....+|..+..+++|+.|++++|..-.+|..+. ++|+.|++++|+.
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCC
Confidence 44456678888888889999998888844887754 6888899988874
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=4.8e-23 Score=241.07 Aligned_cols=130 Identities=18% Similarity=0.148 Sum_probs=60.3
Q ss_pred CCeeEEEEeCCCCCC-CC-chhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCcc-CChh--hccccccC
Q 048834 760 YRLLRVLDLEGVYKP-VL-PETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITS-LPKS--IWKVKTLR 833 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~-~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~-lp~~--i~~l~~L~ 833 (1108)
+++|++|++++|.+. .+ |..+..+++|++|++++|.+..+ |..++++++|++|+|++|.++. +|.. ++++++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 344555555555443 22 33455555555555555544443 4445555555555555555442 2222 45555555
Q ss_pred EEEeccccccccccCCccccCcccccccccccccCCCCChhhhccC--cCCceeeeeec
Q 048834 834 HLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESL--RGLKKLGLTCH 890 (1108)
Q Consensus 834 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~ 890 (1108)
+|++++|.+....+ ...++++++|+.|++..+......+..+..+ .+|+.|+++.+
T Consensus 133 ~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 133 MLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp EEECCSSBCCSCCC-CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred EEECCCCccCccCc-ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 55555554432221 1114455555555555444433333333333 34444544433
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=5e-23 Score=250.43 Aligned_cols=86 Identities=27% Similarity=0.305 Sum_probs=62.2
Q ss_pred CCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCc--cCChhhccccccCE
Q 048834 759 GYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNIT--SLPKSIWKVKTLRH 834 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~ 834 (1108)
++++|++|+|++|.+..+ |..++++.+|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence 455577777777777666 666777777777777777777665 56777777777777777766 46777777777777
Q ss_pred EEeccccccc
Q 048834 835 LYMNDIYLQM 844 (1108)
Q Consensus 835 L~l~~~~~~~ 844 (1108)
|++++|....
T Consensus 158 L~Ls~n~l~~ 167 (606)
T 3vq2_A 158 VDLSYNYIQT 167 (606)
T ss_dssp EECCSSCCCE
T ss_pred EEccCCccee
Confidence 7777776544
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=6.8e-23 Score=230.26 Aligned_cols=279 Identities=19% Similarity=0.184 Sum_probs=227.9
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|++|+++++.+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++|.++.+| .++++++|++|++++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC
Confidence 4559999999999998875 8899999999999999999988 999999999999999999886 599999999999999
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
|..... +. +..+++|+.|++..+......+ .+..+++|+.|+++++... .++. +..+++|+.|++++|....
T Consensus 120 n~i~~~---~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~--~~~~-~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 120 DNISDI---SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK--DVTP-IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp SCCCCC---GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC--CCGG-GGGCTTCSEEECTTSCCCC
T ss_pred CcccCc---hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC--Cchh-hccCCCCCEEEccCCcccc
Confidence 977543 22 7899999999998886655443 4889999999999987653 3333 7889999999999886554
Q ss_pred CCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeC
Q 048834 920 EPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCG 999 (1108)
Q Consensus 920 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 999 (1108)
.+ .+..+++|+.+.+.++--........+++|+.|++++|.+... +. +..+++|+.|++++|.+.. + ..
T Consensus 192 ~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~--~-~~ 260 (347)
T 4fmz_A 192 IS------PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD--I-NA 260 (347)
T ss_dssp CG------GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC--C-GG
T ss_pred cc------cccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC--C-hh
Confidence 22 2567888999999887322222234457999999999988743 33 8899999999999998866 3 34
Q ss_pred CCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCc
Q 048834 1000 DGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1000 ~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+..+++|+.|++++|. +..++ .+..+++|+.|++++|.... .|..+..+++|+.|++++|+
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred HhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 6789999999999995 66664 46789999999999998877 56678889999999999997
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.1e-22 Score=247.33 Aligned_cols=131 Identities=19% Similarity=0.111 Sum_probs=90.3
Q ss_pred cCCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccC-ChhhccccccCE
Q 048834 758 RGYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSL-PKSIWKVKTLRH 834 (1108)
Q Consensus 758 ~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~ 834 (1108)
.++++|++|+|++|.+..+ |..++++.+|++|++++|.+..+ |..++++++|++|++++|.++.+ |..++++++|++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 4455688888888776655 56677888888888888777655 56777788888888888877765 455777888888
Q ss_pred EEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCc--eeeeeec
Q 048834 835 LYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLK--KLGLTCH 890 (1108)
Q Consensus 835 L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~--~L~l~~~ 890 (1108)
|++++|.+... +.+. +..+++|+.|++..+......+..++.+++|+ .|+++++
T Consensus 134 L~L~~n~l~~~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 134 LYLGSNHISSI-KLPK-GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EECCSSCCCCC-CCCT-TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred EECCCCccccc-Cccc-ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 88887766532 2233 33477788887777665555566677777777 5555544
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=2.2e-22 Score=236.66 Aligned_cols=292 Identities=17% Similarity=0.113 Sum_probs=235.7
Q ss_pred CeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 837 (1108)
++|++|+|++|.+..+ |..+..+++|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. ++++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 3499999999998887 46799999999999999988877 77899999999999999999988875 689999999999
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCC
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLND 917 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 917 (1108)
++|.+.... +..+..+++|+.|++..+......+..+..+++|+.|+++.+... ...+..+..+++|+.|.+++|..
T Consensus 112 s~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 112 SENKIVILL--DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp TTSCCCEEC--TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCccccCC--hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcC
Confidence 999776543 455789999999999887666555667889999999999987664 33345688899999999998876
Q ss_pred CCCCCccccCCCCCccCccceEeecc-----cCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeecccccc
Q 048834 918 FGEPSDLVIGPLNNHRALNELYLLGK-----LPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFM 992 (1108)
Q Consensus 918 ~~~~~~~~~~~~~~l~~L~~l~l~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 992 (1108)
...+ ...+..+++|+.|+++++ +|.... ...+|+.|++++|.+....+..+..+++|+.|+|++|.+.
T Consensus 189 ~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 189 NAIR----DYSFKRLYRLKVLEISHWPYLDTMTPNCL---YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CEEC----TTCSCSCTTCCEEEEECCTTCCEECTTTT---TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cEeC----hhhcccCcccceeeCCCCccccccCcccc---cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 5432 235667889999999875 222211 1248999999999988544457889999999999999886
Q ss_pred CceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCc-ccCCCCCCCEEEEecCch
Q 048834 993 GEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPI-ELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 993 ~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~-~l~~l~~L~~L~l~~c~~ 1063 (1108)
+ ..+..+..+++|+.|++++|......|..+..+++|+.|++++|....+|. .+..+++|+.|++++++-
T Consensus 262 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 262 T-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp E-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred c-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 5 234457889999999999997444446678899999999999998877654 468899999999988763
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=2.9e-23 Score=251.65 Aligned_cols=314 Identities=16% Similarity=0.150 Sum_probs=229.0
Q ss_pred cccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCC-CC--CCchhhcCC------CCccEEecCCcc
Q 048834 725 YIECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVY-KP--VLPETVGKL------QLLRYFGLRWTF 795 (1108)
Q Consensus 725 ~~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~-~~--~lp~~i~~l------~~L~~L~l~~~~ 795 (1108)
.+..|+.+....+......+.. +.++++|++|++++|. +. .+|..++.+ .+|++|++++|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~----------l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTF----------LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTT----------TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCCCCEEEecCCcCCccChHH----------HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 4566666655555433332222 3345668888888887 66 478877776 888888888888
Q ss_pred cccccc--ccCCCCCCcEEeccCCcCc-cCChhhccccccCEEEeccccccccccCCccccCccc-ccccccccccCCCC
Q 048834 796 LDSIPE--SVGDLPCLETLDLKHTNIT-SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTN-LQTLWSLLIGNKSP 871 (1108)
Q Consensus 796 i~~lp~--~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~-L~~L~~~~~~~~~~ 871 (1108)
+..+|. .++++++|++|++++|.++ .+| .++++++|++|++++|.+. ..|..++.+++ |+.|++..+... .
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCcCc-c
Confidence 888888 7888888888888888888 888 7888888888888888765 34555778888 888888777655 5
Q ss_pred ChhhhccCc--CCceeeeeecccchhhHHHHHh-------hcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeec
Q 048834 872 PLNWLESLR--GLKKLGLTCHIASLGQIAKWIQ-------DLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLG 942 (1108)
Q Consensus 872 ~~~~l~~l~--~L~~L~l~~~~~~~~~lp~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~ 942 (1108)
++..+..+. +|+.|+++.+... +..|..+. .+++|+.|++++|.....+.. .+..+++|+.|++++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~----~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE----LFSTGSPLSSINLMG 466 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH----HHHTTCCCSEEECCS
T ss_pred cchhhhhcccCccCEEECcCCcCC-CcchhhhcccccccccCCCCCEEECcCCccCcCCHH----HHccCCCCCEEECCC
Confidence 666665544 7888888877654 45555555 566888888888776643322 123467788888877
Q ss_pred cc----CCCCCCC-----CCCCCcceEEEEeccCCCCCccccc--cccccceeeeccccccCceeeeCCCCCCcccEEEe
Q 048834 943 KL----PEPLKLD-----KLPPNLRILTLSLSYLSEDPMPVLG--QLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKL 1011 (1108)
Q Consensus 943 ~~----~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l 1011 (1108)
+- |...... ..+++|+.|++++|.+. .+|..+. .+++|+.|+|++|.+.+ ++..+..+++|+.|++
T Consensus 467 N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEEC
T ss_pred CCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEEC
Confidence 52 2211110 01128999999999887 6777776 89999999999998876 6777788999999999
Q ss_pred c------cCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCch
Q 048834 1012 W------VQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1012 ~------~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
+ ++.....+|..+..+++|+.|++++|..-.+|..+. ++|+.|++++|+-
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTT
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCC
Confidence 5 455566788888889999999999999855887765 7999999999973
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.4e-22 Score=243.28 Aligned_cols=180 Identities=19% Similarity=0.146 Sum_probs=139.0
Q ss_pred cccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCccccccccc-cC
Q 048834 727 ECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSIPES-VG 804 (1108)
Q Consensus 727 ~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~ 804 (1108)
..++.+....+.....++. .+.++++|++|++++|.+..++ ..++.+.+|++|++++|.+..+|.. ++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHG----------DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSCCCEECSS----------TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred CCccEEECcCCccCccChh----------hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 4555555554443333322 2345677999999999988775 6789999999999999998888765 89
Q ss_pred CCCCCcEEeccCCcCc--cCChhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCC
Q 048834 805 DLPCLETLDLKHTNIT--SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGL 882 (1108)
Q Consensus 805 ~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L 882 (1108)
++++|++|++++|.++ .+|..++++++|++|++++|......+ +..++.+++|++|++..+......+..+..+++|
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC-HhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 9999999999999888 456789999999999999987444443 3458889999999998887776677888889999
Q ss_pred ceeeeeecccchhhHHHHH-hhcCCCcEEEEEecCCCC
Q 048834 883 KKLGLTCHIASLGQIAKWI-QDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 883 ~~L~l~~~~~~~~~lp~~l-~~l~~L~~L~l~~~~~~~ 919 (1108)
+.|+++.+.. ..+|.++ ..+++|+.|++++|....
T Consensus 175 ~~L~l~~n~~--~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 175 HHLTLHLSES--AFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEEECSBS--TTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ceEecccCcc--cccchhhHhhcccccEEEccCCcccc
Confidence 9999987765 4566654 457899999998887655
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.5e-22 Score=231.05 Aligned_cols=283 Identities=15% Similarity=0.091 Sum_probs=234.0
Q ss_pred CCeeEEEEeCCCCCCCCchh-hcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCCh-hhccccccCEEE
Q 048834 760 YRLLRVLDLEGVYKPVLPET-VGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLY 836 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~ 836 (1108)
+++|++|+++++.+..+|.. +..+++|++|++++|.+..+|. .+..+++|++|+|++|.++.+|+ .++++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56699999999999999876 6889999999999999998875 78999999999999999997765 489999999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|.+.. .+ +..++++++|+.|++..+......+..+..+++|+.|+++.+... .+ .+..+++|+.|.++++.
T Consensus 124 L~~n~l~~-l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~--~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 124 LERNDLSS-LP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT--HV--DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp CCSSCCCC-CC-TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS--BC--CGGGCTTCSEEECCSSC
T ss_pred CCCCccCc-CC-HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC--cc--ccccccccceeeccccc
Confidence 99997763 22 223588999999999988776666777899999999999987653 22 25678999999998875
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCcee
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEM 996 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 996 (1108)
... +...++|+.|+++++--..... ..+++|+.|++++|.+.+ +..++.+++|+.|+|++|.+.+ ..
T Consensus 198 l~~---------~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~-~~ 264 (390)
T 3o6n_A 198 LST---------LAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK-IM 264 (390)
T ss_dssp CSE---------EECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE-EE
T ss_pred ccc---------cCCCCcceEEECCCCeeeeccc-cccccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCC-cC
Confidence 432 2334678999988763222211 224699999999998875 3578899999999999998866 35
Q ss_pred eeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 997 TCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 997 ~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+..+..+++|+.|++++|. +..+|.....+++|+.|++++|....+|..+..+++|+.|++++|+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 265 YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp SGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred hhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 6678899999999999986 7789988889999999999999887788888889999999999997
No 22
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=8.4e-23 Score=248.41 Aligned_cols=323 Identities=19% Similarity=0.089 Sum_probs=203.1
Q ss_pred cccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCcccccc-ccccC
Q 048834 727 ECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSI-PESVG 804 (1108)
Q Consensus 727 ~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~ 804 (1108)
..++.+....+.....++. .+.++++|++|++++|.+..+ |..++++++|++|++++|.+..+ |..++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~----------~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY----------SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp TTCCEEECTTSCCCEECTT----------TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCcCEEECCCCCcCEeChh----------hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 4555555555444433332 234567799999999998887 56789999999999999998887 78899
Q ss_pred CCCCCcEEeccCCcCccCC-hhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccC----
Q 048834 805 DLPCLETLDLKHTNITSLP-KSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESL---- 879 (1108)
Q Consensus 805 ~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l---- 879 (1108)
++++|++|++++|.++.+| ..++++++|++|++++|.+.. ...|..++++++|++|++..+......+..++.+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC-CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc-eechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 9999999999999998777 569999999999999997653 2346779999999999888775443222222222
Q ss_pred -----------------------cCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCC--CC------------
Q 048834 880 -----------------------RGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE--PS------------ 922 (1108)
Q Consensus 880 -----------------------~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~--~~------------ 922 (1108)
.+|+.|+++++......+|.++..+++|+.+.+........ ..
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 25667777766554456777777777777666643221110 00
Q ss_pred --------------ccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCcc---------------
Q 048834 923 --------------DLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMP--------------- 973 (1108)
Q Consensus 923 --------------~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------- 973 (1108)
....+.+..+++|+.+.+.++--..+.....+++|+.|++++|.+ +.+|.
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~ 339 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNK 339 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCS
T ss_pred ccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCc
Confidence 000111344555666666554222222222234555555555555 34442
Q ss_pred -----ccccccccceeeeccccccCce-eeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCC-C-c
Q 048834 974 -----VLGQLKELNILRLFAHSFMGEE-MTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKK-P-I 1045 (1108)
Q Consensus 974 -----~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~l-p-~ 1045 (1108)
.++.+++|+.|++++|.+.+.. .+..+..+++|++|++++|. +..+|..+..+++|+.|++++|..... | .
T Consensus 340 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp SCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred CccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChh
Confidence 2334455555555555443310 12333455666666666665 445565666677777777777766663 3 3
Q ss_pred ccCCCCCCCEEEEecCc
Q 048834 1046 ELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1046 ~l~~l~~L~~L~l~~c~ 1062 (1108)
.+..+++|+.|++++|.
T Consensus 419 ~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTN 435 (606)
T ss_dssp TTTTCTTCCEEECTTSC
T ss_pred hhhccccCCEEECcCCC
Confidence 56677777777777776
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=3.1e-22 Score=234.20 Aligned_cols=302 Identities=18% Similarity=0.085 Sum_probs=222.4
Q ss_pred ccCCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccc-cccc--cCCCCCCcEEeccCCcCccC-Chh-hcccc
Q 048834 757 RRGYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDS-IPES--VGDLPCLETLDLKHTNITSL-PKS-IWKVK 830 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~L~~~~l~~l-p~~-i~~l~ 830 (1108)
+.++++|++|+|++|.+..+ |..++.+.+|++|++++|.+.. +|.. +.++++|++|+|++|.++.+ |.. +++++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 34567799999999988776 6788999999999999998774 4544 88899999999999988866 544 78899
Q ss_pred ccCEEEeccccccccccCCccccCc--ccccccccccccCCCCChh--------hhccCcCCceeeeeecccchhhHHHH
Q 048834 831 TLRHLYMNDIYLQMSVQKPFVKYSL--TNLQTLWSLLIGNKSPPLN--------WLESLRGLKKLGLTCHIASLGQIAKW 900 (1108)
Q Consensus 831 ~L~~L~l~~~~~~~~~~~~~~l~~l--~~L~~L~~~~~~~~~~~~~--------~l~~l~~L~~L~l~~~~~~~~~lp~~ 900 (1108)
+|++|++++|.+.... +..+..+ .+|+.|++..+........ .+..+++|+.|+++++... +..|..
T Consensus 155 ~L~~L~L~~n~l~~~~--~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~ 231 (455)
T 3v47_A 155 RFHVLDLTFNKVKSIC--EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESMAKR 231 (455)
T ss_dssp TCCEEECTTCCBSCCC--TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-HHHHHH
T ss_pred cccEEeCCCCcccccC--hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccc-ccchhh
Confidence 9999999998776543 3334444 6777777776654432211 2335678999999887665 566776
Q ss_pred Hhhc---CCCcEEEEEecCCCCCCCcc------ccCCC--CCccCccceEeecccCCC--CCCCCCCCCcceEEEEeccC
Q 048834 901 IQDL---ISLESLRLRSLNDFGEPSDL------VIGPL--NNHRALNELYLLGKLPEP--LKLDKLPPNLRILTLSLSYL 967 (1108)
Q Consensus 901 l~~l---~~L~~L~l~~~~~~~~~~~~------~~~~~--~~l~~L~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~ 967 (1108)
+... ++|+.|.+++|......... ....+ ...++|+.++++++--.. ......+++|+.|++++|.+
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 6655 78889998877544321110 00011 123688999988762111 11123347999999999999
Q ss_pred CCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCc-c
Q 048834 968 SEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPI-E 1046 (1108)
Q Consensus 968 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~-~ 1046 (1108)
.+..+..++.+++|+.|+|++|.+.+ ..+..++.+++|++|++++|......|..+..+++|+.|++++|....+|. .
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH
Confidence 87778889999999999999998855 345667889999999999997443347788899999999999998888665 4
Q ss_pred cCCCCCCCEEEEecCc
Q 048834 1047 LEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1047 l~~l~~L~~L~l~~c~ 1062 (1108)
+..+++|+.|++++|+
T Consensus 391 ~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccCCcccEEEccCCC
Confidence 5889999999998765
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=7.9e-23 Score=246.99 Aligned_cols=338 Identities=17% Similarity=0.102 Sum_probs=183.5
Q ss_pred CCCeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCcc--CChhhccccccCE
Q 048834 759 GYRLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITS--LPKSIWKVKTLRH 834 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~ 834 (1108)
++++|++|+|++|.+..+| ..++.+.+|++|++++|.+..+|. .++++++|++|++++|.++. +|..++++++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 4555777777777766664 567777777777777777776664 47777777777777776663 5777777777777
Q ss_pred EEeccccccccccCCccccCcccc----cccccccccCC-----------------------------------------
Q 048834 835 LYMNDIYLQMSVQKPFVKYSLTNL----QTLWSLLIGNK----------------------------------------- 869 (1108)
Q Consensus 835 L~l~~~~~~~~~~~~~~l~~l~~L----~~L~~~~~~~~----------------------------------------- 869 (1108)
|++++|...... +..++.+++| ..|++..+...
T Consensus 154 L~l~~n~l~~~~--~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 154 LDLSSNKIQSIY--CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp EECTTSCCCEEC--GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred EeCcCCccceec--HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceee
Confidence 777776554321 2223334443 22322222111
Q ss_pred ----------------------------------------CCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcE
Q 048834 870 ----------------------------------------SPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLES 909 (1108)
Q Consensus 870 ----------------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~ 909 (1108)
...+..+..+++|+.|+++.+.. ..+|.++..+ +|+.
T Consensus 232 l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l--~~l~~~~~~~-~L~~ 308 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNF-GWQH 308 (570)
T ss_dssp EEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE--CSCCBCCSCC-CCSE
T ss_pred eccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc--hhhhhhhccC-CccE
Confidence 11122334445555555554433 2344444444 5555
Q ss_pred EEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCC-------------------
Q 048834 910 LRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSED------------------- 970 (1108)
Q Consensus 910 L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------------------- 970 (1108)
|.+.+|.....+. ..+++|+.|.+.++.-........+++|+.|++++|.+...
T Consensus 309 L~l~~n~~~~l~~-------~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 309 LELVNCKFGQFPT-------LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp EEEESCBCSSCCB-------CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred EeeccCcccccCc-------ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 5555554432111 23444555555443211100002223444444444433221
Q ss_pred ------CccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC--
Q 048834 971 ------PMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-- 1042 (1108)
Q Consensus 971 ------~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-- 1042 (1108)
++..+..+++|+.|++++|.+.+......+..+++|++|++++|......|..+..+++|+.|++++|....
T Consensus 382 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 461 (570)
T 2z63_A 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461 (570)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcccc
Confidence 222245566666666666655442122345667777777777776544456666778888888888887762
Q ss_pred CCcccCCCCCCCEEEEecCchHHH-HHHHhhccccceeeeCCCCCccccccccchhhhhhhcccccC
Q 048834 1043 KPIELEKLSSLKELTLTDMKKSFE-YEVRGSMAKTVNIVINPPQGKNRHWGETESSARHHKLLLESN 1108 (1108)
Q Consensus 1043 lp~~l~~l~~L~~L~l~~c~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1108)
+|..+..+++|+.|++++|.-... ......+.......-+...+.......+.....++.|.|.+|
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 777778888888888888863211 111112222233333333444333334556667777777766
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.8e-22 Score=243.81 Aligned_cols=250 Identities=18% Similarity=0.104 Sum_probs=130.8
Q ss_pred ccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCC
Q 048834 852 KYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNN 931 (1108)
Q Consensus 852 l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 931 (1108)
++.+++|+.|++..+... .++..+..+++|+.|+++++... ...|..+..+++|+.|.+++|......+. ..+..
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~ 348 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGT---GCLEN 348 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCS-BGGGGCGGGCTTCSEEECCSCSSCCBCCS---STTTT
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcC-cCchhhhhccCcCCEEECCCCCcccccch---hhhhc
Confidence 445566666666655433 45566667777777777766543 33345566677777777776654322111 12334
Q ss_pred ccCccceEeecccCC-------CC---------------------CCCCCCCCcceEEEEeccCCCCCcc-ccccccccc
Q 048834 932 HRALNELYLLGKLPE-------PL---------------------KLDKLPPNLRILTLSLSYLSEDPMP-VLGQLKELN 982 (1108)
Q Consensus 932 l~~L~~l~l~~~~~~-------~~---------------------~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~ 982 (1108)
+++|+.|+++++--. .+ .....+++|+.|++++|.+.+..+. .+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 455555555443100 00 0111123455555555444433322 244555555
Q ss_pred eeeeccccccCceeeeCCCCCCcccEEEeccCCCCCc-ee--eCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEE
Q 048834 983 ILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELRE-WT--IGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTL 1058 (1108)
Q Consensus 983 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-lp--~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l 1058 (1108)
.|++++|.+.+. .+..++.+++|++|++++|..... +| ..+..+++|+.|++++|.... .|..+..+++|+.|++
T Consensus 429 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDIS-SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTT-CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCc-CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 555555555432 333455566666666666653221 12 235567777777777776666 4666777888888888
Q ss_pred ecCchH-HHHHHHhhccccceeeeCCCCCccccccccchhhhhhhcccccC
Q 048834 1059 TDMKKS-FEYEVRGSMAKTVNIVINPPQGKNRHWGETESSARHHKLLLESN 1108 (1108)
Q Consensus 1059 ~~c~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1108)
++|+-. ...+....+... ...-+...+.......+.....++.|.|.+|
T Consensus 508 s~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 508 SHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp CSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 877632 111112222222 3333334444333334456677778888776
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.2e-22 Score=241.31 Aligned_cols=283 Identities=15% Similarity=0.103 Sum_probs=236.2
Q ss_pred CCeeEEEEeCCCCCCCCchh-hcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChh-hccccccCEEE
Q 048834 760 YRLLRVLDLEGVYKPVLPET-VGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLY 836 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~ 836 (1108)
+.++++|+++++.+..+|+. +..+++|++|++++|.+..+|. .++.+++|++|+|++|.++.+|+. ++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56699999999999999875 6889999999999999998765 899999999999999999977765 69999999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|.+.. .+ +..++++++|+.|++..+......+..+..+++|+.|+++++... .++ +..+++|+.|.+++|.
T Consensus 130 L~~n~l~~-l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~--~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 130 LERNDLSS-LP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT--HVD--LSLIPSLFHANVSYNL 203 (597)
T ss_dssp CCSSCCCC-CC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS--BCC--GGGCTTCSEEECCSSC
T ss_pred eeCCCCCC-CC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC--CcC--hhhhhhhhhhhcccCc
Confidence 99997763 22 333689999999999998777777778999999999999987653 232 5678899999998875
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCcee
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEM 996 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 996 (1108)
... +..+++|+.|+++++--..+. ...+++|+.|+|++|.+.+ +..++.+++|+.|+|++|.+.+. .
T Consensus 204 l~~---------l~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~-~ 270 (597)
T 3oja_B 204 LST---------LAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-M 270 (597)
T ss_dssp CSE---------EECCTTCSEEECCSSCCCEEE-CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-E
T ss_pred ccc---------ccCCchhheeeccCCcccccc-cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC-C
Confidence 432 234567899998876322111 1223699999999999875 47788999999999999988763 5
Q ss_pred eeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 997 TCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 997 ~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+..++.+++|+.|++++|. +..+|.....+++|+.|++++|....+|..+..+++|+.|++++|+
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp SGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred HHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence 6678899999999999986 7789988888999999999999988899889999999999999998
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.3e-22 Score=240.03 Aligned_cols=316 Identities=14% Similarity=0.071 Sum_probs=193.6
Q ss_pred cccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccccccCC
Q 048834 727 ECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPESVGD 805 (1108)
Q Consensus 727 ~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~i~~ 805 (1108)
..++.+....+.....++..+ .++++|++|+|++|.+..+ |..++.+++|++|++++|.+..+|.. .
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~----------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDI----------SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--P 119 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGT----------TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--C
T ss_pred CCcCEEECCCCCccccChhhh----------ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--c
Confidence 566666666665555554433 4566699999999998887 66799999999999999999999987 8
Q ss_pred CCCCcEEeccCCcCccCC--hhhccccccCEEEeccccccccccCCccccCcccc--cccccccccC--CCCChhhhc--
Q 048834 806 LPCLETLDLKHTNITSLP--KSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNL--QTLWSLLIGN--KSPPLNWLE-- 877 (1108)
Q Consensus 806 l~~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L--~~L~~~~~~~--~~~~~~~l~-- 877 (1108)
+++|++|++++|.++.+| ..++++++|++|++++|.+... .+..+++| +.|++..+.. ....+..+.
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l 194 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEEC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-----chhhhhhceeeEEEeecccccccccCccccccc
Confidence 999999999999888654 7899999999999999876532 24445555 7777766544 222222222
Q ss_pred ------------------------cCcCCceeeeeecc----------------------------cc---hhhHHHHHh
Q 048834 878 ------------------------SLRGLKKLGLTCHI----------------------------AS---LGQIAKWIQ 902 (1108)
Q Consensus 878 ------------------------~l~~L~~L~l~~~~----------------------------~~---~~~lp~~l~ 902 (1108)
.+++|+.|+++.+. .. ...++..+
T Consensus 195 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~- 273 (562)
T 3a79_B 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF- 273 (562)
T ss_dssp CEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-
T ss_pred CcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-
Confidence 33455555555432 11 11222222
Q ss_pred hcCCCcEEEEEecCCCCCCCcccc-CCCCCc--------------------------cCccceEeecccCCCCCCCCCCC
Q 048834 903 DLISLESLRLRSLNDFGEPSDLVI-GPLNNH--------------------------RALNELYLLGKLPEPLKLDKLPP 955 (1108)
Q Consensus 903 ~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l--------------------------~~L~~l~l~~~~~~~~~~~~~~~ 955 (1108)
..++|++|++++|......+...+ .....+ .+|+.|+++++--........++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 224788888888876533222110 000111 23555555554222222213346
Q ss_pred CcceEEEEeccCCCCCccccccccccceeeeccccccCc-eeeeCCCCCCcccEEEeccCCCCCceeeC-CCcccccceE
Q 048834 956 NLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGE-EMTCGDGGFPKLRVLKLWVQKELREWTIG-KEAMPELREL 1033 (1108)
Q Consensus 956 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L 1033 (1108)
+|++|++++|.+.+..|..++.+++|+.|++++|.+.+- ..+..++.+++|+.|++++|.....+|.. +..+++|+.|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred CceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 777777777777766677777777777777777766541 12344566777777777777633335543 3445555555
Q ss_pred eecccCCCC-CCcccCCCCCCCEEEEecCc
Q 048834 1034 EIRCCKKMK-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1034 ~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
++++|.... .|..+. ++|+.|++++|.
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~ 461 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNR 461 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSC
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCc
Confidence 555555433 332222 355555555554
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=1.8e-21 Score=227.63 Aligned_cols=280 Identities=20% Similarity=0.172 Sum_probs=181.0
Q ss_pred eeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecccc
Q 048834 762 LLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 841 (1108)
+|+.|+++++.+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++|.+..+|. ++++++|++|++++|.
T Consensus 47 ~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp TCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred cccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 39999999999999875 8899999999999999999987 9999999999999999998887 9999999999999997
Q ss_pred ccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCC
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEP 921 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 921 (1108)
..... . +.++++|++|++..+.... . ..+..+++|+.|++.++.. .++. +..+++|+.|++++|.....
T Consensus 124 l~~~~---~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~~~~---~~~~-~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 124 ITDID---P-LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLSFGNQVT---DLKP-LANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp CCCCG---G-GTTCTTCSEEEEEEEEECC-C-GGGTTCTTCSEEEEEESCC---CCGG-GTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCh---H-HcCCCCCCEEECCCCccCC-C-hhhccCCcccEeecCCccc---Cchh-hccCCCCCEEECcCCcCCCC-
Confidence 65432 2 8899999999998875443 2 2366666666666653222 1111 45555666666655543321
Q ss_pred Cccc-----------------cCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCcccccccccccee
Q 048834 922 SDLV-----------------IGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNIL 984 (1108)
Q Consensus 922 ~~~~-----------------~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 984 (1108)
+.+. ...+..+++|+.|+++++--..+.....+++|+.|++++|.+.+..+ +..+++|+.|
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 1000 00122344444444444421111112223456666666555543222 5556666666
Q ss_pred eeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCch
Q 048834 985 RLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 985 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
++++|.+.+ ++. +..+++|+.|++++|. +..++. +..+++|+.|++++|....++. +..+++|+.|++++|+-
T Consensus 271 ~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 271 KLGANQISN--ISP-LAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp ECCSSCCCC--CGG-GTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred ECCCCccCc--ccc-ccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence 666665544 222 4566667777776665 334433 5567777777777776655433 56677777777777763
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=7.3e-22 Score=218.35 Aligned_cols=230 Identities=22% Similarity=0.228 Sum_probs=164.8
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
.+++++|+|+++.+..+|+.++.+.+|++|++++|.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
|...+..+ ..++. . .....+..+++|+.|+++++... .+|..+..+
T Consensus 160 n~~~~~~p--~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l--------------- 205 (328)
T 4fcg_A 160 CPELTELP--EPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR--SLPASIANL--------------- 205 (328)
T ss_dssp ETTCCCCC--SCSEE------E---------C-CCCEEESTTCCEEEEEEECCC--CCCGGGGGC---------------
T ss_pred CCCccccC--hhHhh------c---------cchhhhccCCCCCEEECcCCCcC--cchHhhcCC---------------
Confidence 87655442 22211 0 01112334444455544443321 333333333
Q ss_pred CCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeC
Q 048834 920 EPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCG 999 (1108)
Q Consensus 920 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 999 (1108)
++|+.|++++|.+. .+|..++.+++|+.|+|++|.+.+. ++..
T Consensus 206 -----------------------------------~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~-~p~~ 248 (328)
T 4fcg_A 206 -----------------------------------QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN-YPPI 248 (328)
T ss_dssp -----------------------------------TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCB-CCCC
T ss_pred -----------------------------------CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhh-hHHH
Confidence 35566666666555 3455566677777777777766553 5555
Q ss_pred CCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEec
Q 048834 1000 DGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTD 1060 (1108)
Q Consensus 1000 ~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~ 1060 (1108)
++.+++|++|++++|.....+|..+..+++|+.|++++|+.++ +|..+.++++|+.+.+..
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 6677777777777777777777777777777777777777777 777777777777776653
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=6.9e-21 Score=220.22 Aligned_cols=277 Identities=17% Similarity=0.078 Sum_probs=216.8
Q ss_pred ccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEE
Q 048834 757 RRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLY 836 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 836 (1108)
+..+++|++|++++|.+..+| ++.+++|++|++++|.+..+| ++++++|++|++++|.++.+| ++++++|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 345667999999999998886 889999999999999998886 889999999999999999886 89999999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|.+... .++.+++|+.|++..+...... .+..+++|+.|+++++... .+| +..+++|+.|.+++|.
T Consensus 134 l~~N~l~~l-----~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~--~l~--l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 134 CARNTLTEI-----DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT--ELD--VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CTTSCCSCC-----CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC--CCC--CTTCTTCCEEECCSSC
T ss_pred CCCCcccee-----ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc--eec--cccCCCCCEEECcCCc
Confidence 999987652 2788999999999888655444 4778899999999988664 455 7788999999999887
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCcccccccc-------ccceeeeccc
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLK-------ELNILRLFAH 989 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-------~L~~L~L~~~ 989 (1108)
.... .+..+++|+.|+++++--..+.. ..+++|+.|++++|.+.+..+..+..++ +|+.|++++|
T Consensus 203 l~~~-------~l~~l~~L~~L~Ls~N~l~~ip~-~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n 274 (457)
T 3bz5_A 203 ITKL-------DLNQNIQLTFLDCSSNKLTEIDV-TPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274 (457)
T ss_dssp CSCC-------CCTTCTTCSEEECCSSCCSCCCC-TTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred CCee-------ccccCCCCCEEECcCCcccccCc-cccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCC
Confidence 6542 35678999999998874333333 3347999999999988765433333332 4456666666
Q ss_pred cccCceeeeCCCCCCcccEEEeccCCCCCceeeC--------CCcccccceEeecccCCCCCCcccCCCCCCCEEEEecC
Q 048834 990 SFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIG--------KEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDM 1061 (1108)
Q Consensus 990 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~--------~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c 1061 (1108)
...+. ++ .+.+++|+.|++++|..++.+|.. +..+++|+.|++++|....++ +.++++|+.|+++++
T Consensus 275 ~~~~~-~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 275 TQLIY-FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TTCCE-EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSS
T ss_pred ccCCc-cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCC
Confidence 65553 33 577899999999999988888753 345678888888888776664 788999999999887
Q ss_pred ch
Q 048834 1062 KK 1063 (1108)
Q Consensus 1062 ~~ 1063 (1108)
.-
T Consensus 350 ~l 351 (457)
T 3bz5_A 350 HI 351 (457)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3.1e-21 Score=237.95 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=35.9
Q ss_pred CCcccEEEeccCCC--CCceeeCCCcccccceEeecccCCCCCC-cccCCCCCCCEEEEecCc
Q 048834 1003 FPKLRVLKLWVQKE--LREWTIGKEAMPELRELEIRCCKKMKKP-IELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1003 ~~~L~~L~l~~~~~--l~~lp~~~~~l~~L~~L~i~~c~~l~lp-~~l~~l~~L~~L~l~~c~ 1062 (1108)
+|+|+.|++.+|.. +..+|..+..+++|+.|++++|....+| ..+..+++|+.|++++|.
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCC
Confidence 34444444443331 2344556667777777777777766643 345667777777777775
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=244.06 Aligned_cols=298 Identities=16% Similarity=0.108 Sum_probs=167.5
Q ss_pred ccCCCeeEEEEeCCCC-CCCC-chhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCcc-CChh--hcccc
Q 048834 757 RRGYRLLRVLDLEGVY-KPVL-PETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITS-LPKS--IWKVK 830 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~-~~~l-p~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~-lp~~--i~~l~ 830 (1108)
+.++++|++|+|++|. +..+ |..++++.+|++|+|++|.+..+ |..++++++|++|+|++|.+.. +|.. +++++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 3455667777777773 4444 56677777777777777776655 6677777777777777777663 4544 67777
Q ss_pred ccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccC--cCCceeeeeecccchhhHHHHHhhcC---
Q 048834 831 TLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESL--RGLKKLGLTCHIASLGQIAKWIQDLI--- 905 (1108)
Q Consensus 831 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~lp~~l~~l~--- 905 (1108)
+|++|++++|.+.... .+..++++++|+.|++..+......+..+..+ ++|+.|+++.+... ...|..+..+.
T Consensus 124 ~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~-~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY-SRVSVDWGKCMNPF 201 (844)
T ss_dssp SCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSC-CCCCCCCCSSSCTT
T ss_pred CCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccc-cccccchhhcCCcc
Confidence 7777777777664332 23446777777777777665554445555555 66777777655433 22222222222
Q ss_pred ---CCcEEEEEecCCCCCCCccccC--------------------------------CCC--CccCccceEeecccCCC-
Q 048834 906 ---SLESLRLRSLNDFGEPSDLVIG--------------------------------PLN--NHRALNELYLLGKLPEP- 947 (1108)
Q Consensus 906 ---~L~~L~l~~~~~~~~~~~~~~~--------------------------------~~~--~l~~L~~l~l~~~~~~~- 947 (1108)
+|+.|++++|......+..... .+. ..++|+.|+++++.-..
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 2667777666433221111000 000 12455555555431100
Q ss_pred -CCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCC
Q 048834 948 -LKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKE 1025 (1108)
Q Consensus 948 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~ 1025 (1108)
......+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+.+. .+..+..+++|+.|++++|. +..++. .+.
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~ 359 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNH-IAIIQDQTFK 359 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEECCSCC-CCCCCSSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEECCCCC-CCccChhhhc
Confidence 01112234666666666666555555566666666666666655432 34455566666666666664 333332 345
Q ss_pred cccccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 1026 AMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1026 ~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
.+++|+.|++++|....++. +++|+.|++++|+
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCC
T ss_pred CCCCCCEEECCCCCCCcccC----CCCcchhccCCCC
Confidence 56666666666665544332 4555566655554
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.7e-21 Score=222.51 Aligned_cols=270 Identities=16% Similarity=0.080 Sum_probs=214.8
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|++|++++|.+..+| .++.+++|++|++++|.+..+| ++.+++|++|++++|.++.+| ++++++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 444999999999999987 6999999999999999999987 899999999999999999886 89999999999999
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
|.+.. . + ++.+++|+.|++..+.... + .++.+++|+.|+++.+... +.+ .+..+++|+.|++++|....
T Consensus 116 N~l~~-l--~--~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 116 NKLTK-L--D--VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKI-TKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp SCCSC-C--C--CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCC-CCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CcCCe-e--c--CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcc-ccc--ccccCCcCCEEECCCCccce
Confidence 97764 2 2 7899999999998876554 2 3788999999999977432 333 36778999999999987655
Q ss_pred CCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeC
Q 048834 920 EPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCG 999 (1108)
Q Consensus 920 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 999 (1108)
.+ +..+++|+.|.++++--....+.. +++|+.|++++|.+.+ +| ++.+++|+.|++++|.+.+. +
T Consensus 185 l~-------l~~l~~L~~L~l~~N~l~~~~l~~-l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~--~-- 249 (457)
T 3bz5_A 185 LD-------VSQNKLLNRLNCDTNNITKLDLNQ-NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL--D-- 249 (457)
T ss_dssp CC-------CTTCTTCCEEECCSSCCSCCCCTT-CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC--C--
T ss_pred ec-------cccCCCCCEEECcCCcCCeecccc-CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc--C--
Confidence 21 567889999999887433333333 4799999999999886 55 78999999999999998763 2
Q ss_pred CCCCCcc----------cEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCc--------ccCCCCCCCEEEEec
Q 048834 1000 DGGFPKL----------RVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPI--------ELEKLSSLKELTLTD 1060 (1108)
Q Consensus 1000 ~~~~~~L----------~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~--------~l~~l~~L~~L~l~~ 1060 (1108)
.+.+++| +.|++++|..+..+| .+.+++|+.|++++|+.++ +|. .+..+++|+.|++++
T Consensus 250 ~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTT
T ss_pred HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCC
Confidence 3455555 556667777777777 4578999999999998776 443 244556777777777
Q ss_pred Cc
Q 048834 1061 MK 1062 (1108)
Q Consensus 1061 c~ 1062 (1108)
|.
T Consensus 328 N~ 329 (457)
T 3bz5_A 328 TE 329 (457)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 34
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=6.1e-22 Score=239.20 Aligned_cols=319 Identities=18% Similarity=0.136 Sum_probs=219.1
Q ss_pred ccccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCccccc--cc
Q 048834 724 EYIECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDS--IP 800 (1108)
Q Consensus 724 ~~~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~--lp 800 (1108)
..+..|+.+....+.....++.. +.++++|++|++++|.+..+|. .++.+.+|++|++++|.+.. +|
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp 142 (570)
T 2z63_A 73 QSLSHLSTLILTGNPIQSLALGA----------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (570)
T ss_dssp TTCTTCCEEECTTCCCCEECTTT----------TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCchhCCEEeCcCCcCCccCHhh----------hcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence 34556666555554443333332 3345668888888888888765 58888888888888887774 68
Q ss_pred cccCCCCCCcEEeccCCcCccCC-hhhcccccc----CEEEeccccccccc-----------------------------
Q 048834 801 ESVGDLPCLETLDLKHTNITSLP-KSIWKVKTL----RHLYMNDIYLQMSV----------------------------- 846 (1108)
Q Consensus 801 ~~i~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L----~~L~l~~~~~~~~~----------------------------- 846 (1108)
..++++++|++|++++|.++.++ ..++.+++| +.|++++|......
T Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 222 (570)
T 2z63_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222 (570)
T ss_dssp GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHH
T ss_pred hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhc
Confidence 88888888888888888777554 456666666 66666655432111
Q ss_pred --------------------------------------------------cCCccccCcccccccccccccCCCCChhhh
Q 048834 847 --------------------------------------------------QKPFVKYSLTNLQTLWSLLIGNKSPPLNWL 876 (1108)
Q Consensus 847 --------------------------------------------------~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l 876 (1108)
..+..+..+++|+.|++..+... .++..+
T Consensus 223 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~ 301 (570)
T 2z63_A 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS 301 (570)
T ss_dssp TTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCC
T ss_pred CccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhh
Confidence 01223455677777777666443 456666
Q ss_pred ccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccc--------------------cCCCCCccCcc
Q 048834 877 ESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLV--------------------IGPLNNHRALN 936 (1108)
Q Consensus 877 ~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~--------------------~~~~~~l~~L~ 936 (1108)
..+ +|+.|+++.+... .+|. ..+++|+.|.+.+|......+... ...+..+++|+
T Consensus 302 ~~~-~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp SCC-CCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred ccC-CccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccC
Confidence 677 8888888876553 4443 356677777777665433221100 01122345555
Q ss_pred ceEeeccc----CCCCCCCCCCCCcceEEEEeccCCCCCc-cccccccccceeeeccccccCceeeeCCCCCCcccEEEe
Q 048834 937 ELYLLGKL----PEPLKLDKLPPNLRILTLSLSYLSEDPM-PVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKL 1011 (1108)
Q Consensus 937 ~l~l~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l 1011 (1108)
.|+++++- +.. ...+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+. .+..+..+++|++|++
T Consensus 377 ~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 377 YLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKM 452 (570)
T ss_dssp EEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEEC
T ss_pred EEECCCCcccccccc---ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCcCcEEEC
Confidence 56555441 111 1224689999999888776554 4678999999999999987663 5566788999999999
Q ss_pred ccCCCC-CceeeCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCc
Q 048834 1012 WVQKEL-REWTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1012 ~~~~~l-~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
++|... ..+|..+..+++|+.|++++|.... .|..+..+++|+.|++++|.
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 999854 3688889999999999999999888 58889999999999999996
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=239.88 Aligned_cols=302 Identities=19% Similarity=0.093 Sum_probs=235.1
Q ss_pred CCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCc-ccccc-ccccCCCCCCcEEeccCCcCccC-ChhhccccccCEE
Q 048834 760 YRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWT-FLDSI-PESVGDLPCLETLDLKHTNITSL-PKSIWKVKTLRHL 835 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~-~i~~l-p~~i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L 835 (1108)
.++|++|+|++|.+..+ |..+.++.+|++|++++| .+..+ |..+.++++|++|+|++|.+..+ |..++++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 35599999999998876 678999999999999999 56677 77899999999999999999865 7789999999999
Q ss_pred EeccccccccccCCccccCcccccccccccccCCCCC-hhhhccCcCCceeeeeecccchhhHHHHHhhc--CCCcEEEE
Q 048834 836 YMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPP-LNWLESLRGLKKLGLTCHIASLGQIAKWIQDL--ISLESLRL 912 (1108)
Q Consensus 836 ~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l--~~L~~L~l 912 (1108)
++++|......+....++++++|++|++..+...... +..++.+++|+.|+++++... ...+..+..+ ++|+.|.+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~-~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC-CCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC-eeCHHHcccccCCccceEEC
Confidence 9999988765444444889999999999988766543 357899999999999987654 3334445555 89999999
Q ss_pred EecCCCCCCCccccC--CCCCccCccceEeeccc-----CCCCC----------------------------------CC
Q 048834 913 RSLNDFGEPSDLVIG--PLNNHRALNELYLLGKL-----PEPLK----------------------------------LD 951 (1108)
Q Consensus 913 ~~~~~~~~~~~~~~~--~~~~l~~L~~l~l~~~~-----~~~~~----------------------------------~~ 951 (1108)
++|......+..... .......|+.|+++++- +..+. +.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 998766543221110 01112247788776651 11000 00
Q ss_pred C-CCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCccccc
Q 048834 952 K-LPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPEL 1030 (1108)
Q Consensus 952 ~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L 1030 (1108)
. .+++|+.|++++|.+....+..++.+++|+.|+|++|.+.+ ..+..+..+++|++|++++|..-...|..+..+++|
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 0 13689999999999887778888999999999999998865 245567889999999999997544457788899999
Q ss_pred ceEeecccCCCCC-CcccCCCCCCCEEEEecCch
Q 048834 1031 RELEIRCCKKMKK-PIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1031 ~~L~i~~c~~l~l-p~~l~~l~~L~~L~l~~c~~ 1063 (1108)
+.|++++|....+ +..+..+++|+.|++++|.-
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 9999999987664 44678899999999999973
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=5.7e-21 Score=227.41 Aligned_cols=312 Identities=15% Similarity=0.113 Sum_probs=180.9
Q ss_pred cccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccc--cccc
Q 048834 725 YIECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDS--IPES 802 (1108)
Q Consensus 725 ~~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~--lp~~ 802 (1108)
.+..|+.+....+.....++.. +.++++|++|+|++|.+..+|.. .+.+|++|++++|.+.. +|..
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~ 110 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISV----------FKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKE 110 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGG----------GTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred ccccccEEecCCCccCCcChHH----------hhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhh
Confidence 3456666655555444333333 34566699999999999988877 89999999999998875 5788
Q ss_pred cCCCCCCcEEeccCCcCccCChhhcccccc--CEEEeccccccccccCCcccc--------------------------C
Q 048834 803 VGDLPCLETLDLKHTNITSLPKSIWKVKTL--RHLYMNDIYLQMSVQKPFVKY--------------------------S 854 (1108)
Q Consensus 803 i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~~~~~~~~~~l~--------------------------~ 854 (1108)
++++++|++|++++|.++. ..++.+++| ++|++++|........+..+. .
T Consensus 111 ~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~ 188 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188 (520)
T ss_dssp GGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTT
T ss_pred hccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhc
Confidence 9999999999999998765 346677777 888888776511111111122 2
Q ss_pred cccccccccc---------------------------------------------------------cccCCCCChhhh-
Q 048834 855 LTNLQTLWSL---------------------------------------------------------LIGNKSPPLNWL- 876 (1108)
Q Consensus 855 l~~L~~L~~~---------------------------------------------------------~~~~~~~~~~~l- 876 (1108)
+++|+.|++. .+.....++..+
T Consensus 189 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp CSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred ccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence 3333333332 222222334444
Q ss_pred ----ccCcCCceeeeeecccchhhHH-HHHhhc---CCCcEEEEEecCCCCCCCccccCCCCCccCccceEeeccc----
Q 048834 877 ----ESLRGLKKLGLTCHIASLGQIA-KWIQDL---ISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKL---- 944 (1108)
Q Consensus 877 ----~~l~~L~~L~l~~~~~~~~~lp-~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~---- 944 (1108)
+.+++|+.++++.+.. .+| .++..+ .+|+.|.+++|...... ....+++|+.|+++++-
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~---~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~Ls~n~l~~~ 339 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF---GFPQSYIYEIFSNMNIKNFTVSGTRMVHML------CPSKISPFLHLDFSNNLLTDT 339 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC---CSCTHHHHHHHHTCCCSEEEEESSCCCCCC------CCSSCCCCCEEECCSSCCCTT
T ss_pred hcccccCceeEeccccccce---ecchhhhhcccccCceeEEEcCCCcccccc------chhhCCcccEEEeECCccChh
Confidence 5555555555554433 222 222222 34555555544432211 01234445555554431
Q ss_pred -CCCCC-----------------------CCCCCCCcceEEEEeccCCCCCccc-cccccccceeeeccccccCceeeeC
Q 048834 945 -PEPLK-----------------------LDKLPPNLRILTLSLSYLSEDPMPV-LGQLKELNILRLFAHSFMGEEMTCG 999 (1108)
Q Consensus 945 -~~~~~-----------------------~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~ 999 (1108)
|..+. ....+++|+.|++++|.+.+.+|.. +..+++|+.|++++|.+.+. .+..
T Consensus 340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~ 418 (520)
T 2z7x_B 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT-IFRC 418 (520)
T ss_dssp TTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG-GGGS
T ss_pred hhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc-hhhh
Confidence 11110 0111234555555555444333332 34455555555555544332 1111
Q ss_pred CCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcc-cCCCCCCCEEEEecCch
Q 048834 1000 DGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIE-LEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1000 ~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~-l~~l~~L~~L~l~~c~~ 1063 (1108)
+. ++|+.|++++|. +..+|..+..+++|+.|++++|....+|.. +..+++|+.|++++|+-
T Consensus 419 l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 419 LP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 11 577777777775 567787777889999999999987778776 78889999999988773
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=2.5e-21 Score=232.50 Aligned_cols=321 Identities=18% Similarity=0.115 Sum_probs=187.0
Q ss_pred ccccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCchh-hcCCCCccEEecCCccccc--cc
Q 048834 724 EYIECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPET-VGKLQLLRYFGLRWTFLDS--IP 800 (1108)
Q Consensus 724 ~~~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~--lp 800 (1108)
..+..|+.+....+.....++.. +.++++|++|++++|.+..+|+. ++.+++|++|++++|.+.. .|
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 116 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDA----------FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTT----------TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS
T ss_pred hcCCcccEEECCCCCcCccChhh----------ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh
Confidence 44566666665555444444332 33456699999999988887765 8889999999999988874 46
Q ss_pred cccCCCCCCcEEeccCCc-CccCC-hhhccccccCEEEeccccccccccCCccccCccccccccc---------------
Q 048834 801 ESVGDLPCLETLDLKHTN-ITSLP-KSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWS--------------- 863 (1108)
Q Consensus 801 ~~i~~l~~L~~L~L~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~--------------- 863 (1108)
..++++++|++|++++|. +..+| ..++++++|++|++++|...... +..++.+++|+.|++
T Consensus 117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 194 (549)
T 2z81_A 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ--SQSLKSIRDIHHLTLHLSESAFLLEIFADI 194 (549)
T ss_dssp CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC--TTTTTTCSEEEEEEEECSBSTTHHHHHHHS
T ss_pred hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC--hhhhhccccCceEecccCcccccchhhHhh
Confidence 778889999999998886 66776 46888888999988888765433 334555555554443
Q ss_pred ---------ccccCCCC---ChhhhccCcCCceeeeeecccc--------------------------------------
Q 048834 864 ---------LLIGNKSP---PLNWLESLRGLKKLGLTCHIAS-------------------------------------- 893 (1108)
Q Consensus 864 ---------~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~-------------------------------------- 893 (1108)
..+..... .......+++|+.|++.++...
T Consensus 195 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 274 (549)
T 2z81_A 195 LSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274 (549)
T ss_dssp TTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTT
T ss_pred cccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccch
Confidence 33221110 0000011122222222221111
Q ss_pred -----------------------------------------------hhhHHHHH-hhcCCCcEEEEEecCCCCCCCccc
Q 048834 894 -----------------------------------------------LGQIAKWI-QDLISLESLRLRSLNDFGEPSDLV 925 (1108)
Q Consensus 894 -----------------------------------------------~~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~ 925 (1108)
+..+|..+ ..+++|+.|++++|......+. .
T Consensus 275 ~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~-~ 353 (549)
T 2z81_A 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK-N 353 (549)
T ss_dssp TCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH-H
T ss_pred hhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc-c
Confidence 01223332 2344555555544433221000 0
Q ss_pred cCCCCCccCccceEeecccCCCCC----CCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeee---
Q 048834 926 IGPLNNHRALNELYLLGKLPEPLK----LDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTC--- 998 (1108)
Q Consensus 926 ~~~~~~l~~L~~l~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--- 998 (1108)
...+..+++|+.|+++++--..+. ....+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.. ++.
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~--l~~~~~ 430 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV--VKTCIP 430 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC--CCTTSC
T ss_pred hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc--ccchhc
Confidence 111234455555555544211110 0122356666666666555 455555566666666666655432 111
Q ss_pred ---------------CCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCC-CcccCCCCCCCEEEEecCc
Q 048834 999 ---------------GDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKK-PIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 999 ---------------~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~l-p~~l~~l~~L~~L~l~~c~ 1062 (1108)
..+.+++|++|++++|. +..+|. ...+++|+.|++++|....+ |..+..+++|+.|++++|+
T Consensus 431 ~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~-l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNK-LKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp TTCSEEECCSSCCSCCCCCCTTCCEEECCSSC-CSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCceEEECCCCChhhhcccCChhcEEECCCCc-cCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCC
Confidence 12367888888888885 667776 45788999999999987774 4558889999999998877
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=222.78 Aligned_cols=276 Identities=21% Similarity=0.136 Sum_probs=221.9
Q ss_pred ccCCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccC-ChhhccccccC
Q 048834 757 RRGYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSL-PKSIWKVKTLR 833 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~ 833 (1108)
+.++++|++|+|++|.+..+ |..++++.+|++|++++|.+..+|.. +.++++|++|+|++|.+..+ |..+.++++|+
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence 34567799999999998877 77899999999999999999999875 68999999999999988855 56789999999
Q ss_pred EEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEE
Q 048834 834 HLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLR 913 (1108)
Q Consensus 834 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~ 913 (1108)
+|++++|...... +..+..+++|+.|++..+.........+..+++|+.|+++.+... ...+..+..+++|+.|+++
T Consensus 132 ~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 132 SLEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp EEEECCTTCCEEC--TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EECTTCSCSCTTCCEEEEE
T ss_pred EEECCCCccceeC--hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeChhhcccCcccceeeCC
Confidence 9999998775433 445889999999999988776666677899999999999987654 2333456778999999999
Q ss_pred ecCCCCCCCccccCCCCCccCccceEeecccCCCCC--CCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccc
Q 048834 914 SLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLK--LDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSF 991 (1108)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 991 (1108)
+|......+. ......+|+.|+++++--..+. ....+++|+.|+|++|.+....+..+..+++|+.|+|++|.+
T Consensus 209 ~~~~~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 209 HWPYLDTMTP----NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp CCTTCCEECT----TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred CCccccccCc----ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 9876654332 2233458999999887322221 122347999999999998876677788999999999999988
Q ss_pred cCceeeeCCCCCCcccEEEeccCCCCCceee-CCCcccccceEeecccCCC
Q 048834 992 MGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMPELRELEIRCCKKM 1041 (1108)
Q Consensus 992 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l 1041 (1108)
.+ ..+..+..+++|+.|++++|. +..+|. .+..+++|+.|++++|+..
T Consensus 285 ~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 285 AV-VEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SE-ECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ce-ECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence 66 245667889999999999996 666665 4578999999999998864
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=1.2e-20 Score=232.80 Aligned_cols=319 Identities=19% Similarity=0.106 Sum_probs=164.3
Q ss_pred cccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCcccccccc-ccC
Q 048834 727 ECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPE-SVG 804 (1108)
Q Consensus 727 ~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~-~i~ 804 (1108)
..++.+....+.....++..+..+ ++|++|++++|.+..+ |..++++++|++|++++|.+..+|. .++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l----------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRY----------SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGG----------TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCC----------CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 455555555444444444334333 3377777777776665 4556777777777777777777765 477
Q ss_pred CCCCCcEEeccCCcCccCC-hhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhc--cCcC
Q 048834 805 DLPCLETLDLKHTNITSLP-KSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLE--SLRG 881 (1108)
Q Consensus 805 ~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~--~l~~ 881 (1108)
++++|++|++++|.++.+| ..++++++|++|++++|...... +..++++++|++|++..+......+..+. .+++
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 7777777777777777665 35777777777777777654332 33466777777777766654433333333 3467
Q ss_pred CceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeeccc-----CCCCCCCCCCCC
Q 048834 882 LKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKL-----PEPLKLDKLPPN 956 (1108)
Q Consensus 882 L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-----~~~~~~~~~~~~ 956 (1108)
|+.|+++.+... +..|..+..+++|+.|.+.++......... .......++|+.|+++++- |..+.... .++
T Consensus 173 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~-~~~ 249 (680)
T 1ziw_A 173 LKKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEK-LCLELANTSIRNLSLSNSQLSTTSNTTFLGLK-WTN 249 (680)
T ss_dssp ESEEECTTCCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHH-HHHHHTTSCCCEEECTTSCCCEECTTTTGGGG-GSC
T ss_pred ccEEECCCCccc-ccChhhhhhhhhhhhhhccccccChhhHHH-HHHHhhhccccEEEccCCcccccChhHhhccC-cCC
Confidence 777777665432 222333444444444443322211000000 0000011344555544431 11111000 023
Q ss_pred cceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCC-----ceee----CCCcc
Q 048834 957 LRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELR-----EWTI----GKEAM 1027 (1108)
Q Consensus 957 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~lp~----~~~~l 1027 (1108)
|+.|++++|.+.+..+..++.+++|+.|++++|.+.+ ..+..++.+++|+.|++.++..-. .+|. .+..+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 5566665555554444455555666666665555543 133344555555555555432111 1221 34445
Q ss_pred cccceEeecccCCCC-CCcccCCCCCCCEEEEecC
Q 048834 1028 PELRELEIRCCKKMK-KPIELEKLSSLKELTLTDM 1061 (1108)
Q Consensus 1028 ~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c 1061 (1108)
++|+.|++++|.... .|..+..+++|++|++++|
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 555555555555544 3334455555555555554
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=4.3e-20 Score=205.48 Aligned_cols=283 Identities=18% Similarity=0.136 Sum_probs=165.3
Q ss_pred eeEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccC-ChhhccccccCEEEecc
Q 048834 762 LLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSL-PKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~ 839 (1108)
+|++++++++.+..+|..+. ++|++|++++|.+..+|. .+.++++|++|+|++|.++.+ |..++++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 46777777777777766543 567777777777776654 566777777777777776655 55677777777777777
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccc-hhhHHHHHhhcCCCcEEEEEecCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIAS-LGQIAKWIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~lp~~l~~l~~L~~L~l~~~~~~ 918 (1108)
|.+.. . +..+. ++|+.|++..+......+..+..+++|+.|+++.+... .+..+..+..+++|+.|.+++|...
T Consensus 110 n~l~~-l--~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 110 NQLKE-L--PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SCCSB-C--CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CcCCc-c--Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 65542 1 22222 56666666665554444555667777777777765442 1233455666777777777776654
Q ss_pred CCCCccccCCCCCccCccceEeecccCCCC--CCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCcee
Q 048834 919 GEPSDLVIGPLNNHRALNELYLLGKLPEPL--KLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEM 996 (1108)
Q Consensus 919 ~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 996 (1108)
..+... .++|+.|+++++--... .....+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.. +
T Consensus 185 ~l~~~~-------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--l 255 (330)
T 1xku_A 185 TIPQGL-------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--V 255 (330)
T ss_dssp SCCSSC-------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--C
T ss_pred cCCccc-------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--C
Confidence 322211 14555555554411100 011122466777777666665445556666777777777766653 5
Q ss_pred eeCCCCCCcccEEEeccCCCCCceeeC-CC------cccccceEeecccCCCC---CCcccCCCCCCCEEEEecC
Q 048834 997 TCGDGGFPKLRVLKLWVQKELREWTIG-KE------AMPELRELEIRCCKKMK---KPIELEKLSSLKELTLTDM 1061 (1108)
Q Consensus 997 ~~~~~~~~~L~~L~l~~~~~l~~lp~~-~~------~l~~L~~L~i~~c~~l~---lp~~l~~l~~L~~L~l~~c 1061 (1108)
+..+..+++|++|++++|. +..+|.. +. ..++|+.|++.+|+... .|..+..+.+|+.++++++
T Consensus 256 p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 5556666777777776665 4444422 11 23566677777776543 3445555666666666654
No 41
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.7e-21 Score=212.60 Aligned_cols=249 Identities=21% Similarity=0.191 Sum_probs=165.2
Q ss_pred CeeEEEEeCCCCCC---CCchhhcCCCCccEEecCC-cccc-ccccccCCCCCCcEEeccCCcCc-cCChhhccccccCE
Q 048834 761 RLLRVLDLEGVYKP---VLPETVGKLQLLRYFGLRW-TFLD-SIPESVGDLPCLETLDLKHTNIT-SLPKSIWKVKTLRH 834 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~---~lp~~i~~l~~L~~L~l~~-~~i~-~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~ 834 (1108)
.+++.|+|+++.+. .+|+.++.+++|++|++++ +.+. .+|..++++++|++|+|++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 34999999999887 5899999999999999995 6655 78999999999999999999988 88999999999999
Q ss_pred EEeccccccccccCCccccCcccccccccccccCCCCChhhhccCc-CCceeeeeecccchhhHHHHHhhcCCCcEEEEE
Q 048834 835 LYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLR-GLKKLGLTCHIASLGQIAKWIQDLISLESLRLR 913 (1108)
Q Consensus 835 L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~ 913 (1108)
|++++|.+.+.. +..++.+++|++|++..+......+..+..++ +|+.|+++.+... +.+|..+..++ |+.|+++
T Consensus 130 L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 130 LDFSYNALSGTL--PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-GKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp EECCSSEEESCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE-EECCGGGGGCC-CSEEECC
T ss_pred EeCCCCccCCcC--ChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee-ccCChHHhCCc-ccEEECc
Confidence 999999776433 55577788888887777765555666677776 7777777766543 34555555554 6666666
Q ss_pred ecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccC
Q 048834 914 SLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMG 993 (1108)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 993 (1108)
+|......+. .+. .+++|+.|++++|.+.+.++. +..+++|+.|+|++|.+.+
T Consensus 206 ~N~l~~~~~~----~~~----------------------~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 206 RNMLEGDASV----LFG----------------------SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp SSEEEECCGG----GCC----------------------TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CCcccCcCCH----HHh----------------------cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 5543321111 011 113555555555555433332 4455566666666555543
Q ss_pred ceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC
Q 048834 994 EEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 994 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 1042 (1108)
. ++..+..+++|+.|++++|.....+|.. +.+++|+.|++.+|+.+.
T Consensus 259 ~-~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 259 T-LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp C-CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred c-CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence 2 3444555556666666655533344443 555666666666665443
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=3.1e-20 Score=206.69 Aligned_cols=282 Identities=17% Similarity=0.155 Sum_probs=159.4
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCccC-ChhhccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSL-PKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~ 840 (1108)
|++++++++.+..+|..+. .+|++|++++|.+..+| ..+.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 5555555555555555442 45555666555555543 3455555566666655555543 444555556666665555
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccch-hhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASL-GQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
.... . +..+. ++|++|++..+......+..+..+++|+.|+++++.... ...|..+..+ +|+.|++++|....
T Consensus 113 ~l~~-l--~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 113 HLVE-I--PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp CCCS-C--CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred cCCc-c--Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 4431 1 22122 455555555444433333345556666666666554321 1222333333 56666666555443
Q ss_pred CCCccccCCCCCccCccceEeecccCCCC--CCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceee
Q 048834 920 EPSDLVIGPLNNHRALNELYLLGKLPEPL--KLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMT 997 (1108)
Q Consensus 920 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 997 (1108)
.+... .++|+.|+++++.-... .....+++|+.|++++|.+....+..++.+++|+.|+|++|.+.. ++
T Consensus 187 l~~~~-------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp 257 (332)
T 2ft3_A 187 IPKDL-------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR--VP 257 (332)
T ss_dssp CCSSS-------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB--CC
T ss_pred cCccc-------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee--cC
Confidence 22211 14556666555421111 111223578888888888776666677888888888888887763 66
Q ss_pred eCCCCCCcccEEEeccCCCCCceeeC-CC------cccccceEeecccCCC--C-CCcccCCCCCCCEEEEecCc
Q 048834 998 CGDGGFPKLRVLKLWVQKELREWTIG-KE------AMPELRELEIRCCKKM--K-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 998 ~~~~~~~~L~~L~l~~~~~l~~lp~~-~~------~l~~L~~L~i~~c~~l--~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
..+..+++|+.|+++++. +..+|.. +. .+++|+.|++.+|+.. . .|..+..+++|+.+++++|.
T Consensus 258 ~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 AGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 667788888888888876 5555432 21 2567888888888876 3 45567778888888888775
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.1e-19 Score=218.12 Aligned_cols=315 Identities=17% Similarity=0.133 Sum_probs=195.6
Q ss_pred ccccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccc--c
Q 048834 724 EYIECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIP--E 801 (1108)
Q Consensus 724 ~~~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp--~ 801 (1108)
..+..|+.+....+.....++.. +.++++|++|+|++|.+..+|.. .+.+|++|++++|.+..+| .
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~ 140 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHV----------FLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCK 140 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTT----------TTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCG
T ss_pred ccCCCccEEECCCCCCCcCCHHH----------hCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchH
Confidence 45566776666655544444333 34566699999999999999987 8999999999999988765 7
Q ss_pred ccCCCCCCcEEeccCCcCccCChhhcccccc--CEEEeccccc--cccccCCcccc------------------------
Q 048834 802 SVGDLPCLETLDLKHTNITSLPKSIWKVKTL--RHLYMNDIYL--QMSVQKPFVKY------------------------ 853 (1108)
Q Consensus 802 ~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~~~l~------------------------ 853 (1108)
.++++++|++|++++|.++.. .+..+++| ++|++++|.. .... +..+.
T Consensus 141 ~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~--~~~l~~l~~~~l~l~l~~n~~~~~~~~~~ 216 (562)
T 3a79_B 141 EFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGE--TESLQIPNTTVLHLVFHPNSLFSVQVNMS 216 (562)
T ss_dssp GGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSS--CCEEEECCEEEEEEEECSSSCCCCCCEEE
T ss_pred hhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccC--cccccccCcceEEEEecCccchhhhhhhc
Confidence 899999999999999988752 35566666 9999988866 2211 11122
Q ss_pred --Cccccccccccc-------------------------------------------------------ccCCCCChhhh
Q 048834 854 --SLTNLQTLWSLL-------------------------------------------------------IGNKSPPLNWL 876 (1108)
Q Consensus 854 --~l~~L~~L~~~~-------------------------------------------------------~~~~~~~~~~l 876 (1108)
.+++|+.|++.. +.....++..+
T Consensus 217 ~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~ 296 (562)
T 3a79_B 217 VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296 (562)
T ss_dssp ESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCC
T ss_pred ccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchh
Confidence 233444443332 22211222222
Q ss_pred -----ccCcCCceeeeeecccch-hhHHHHH----------------------hhcCCCcEEEEEecCCCCCCCccccCC
Q 048834 877 -----ESLRGLKKLGLTCHIASL-GQIAKWI----------------------QDLISLESLRLRSLNDFGEPSDLVIGP 928 (1108)
Q Consensus 877 -----~~l~~L~~L~l~~~~~~~-~~lp~~l----------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~ 928 (1108)
..+++|+.+++..+.... ......+ ..+++|+.|++++|...... ...
T Consensus 297 ~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~ 372 (562)
T 3a79_B 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV----FQG 372 (562)
T ss_dssp CCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT----TTT
T ss_pred hhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch----hhh
Confidence 222222222222211100 0111111 23445555555554433321 123
Q ss_pred CCCccCccceEeecccCCCC----CCCCCCCCcceEEEEeccCCCCCcc-ccccccccceeeeccccccCceeeeCCCCC
Q 048834 929 LNNHRALNELYLLGKLPEPL----KLDKLPPNLRILTLSLSYLSEDPMP-VLGQLKELNILRLFAHSFMGEEMTCGDGGF 1003 (1108)
Q Consensus 929 ~~~l~~L~~l~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 1003 (1108)
+..+++|+.|+++++--..+ .....+++|+.|++++|.+.+.+|. .+..+++|+.|++++|.+.+. .+. .+
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~---~l 448 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS-VFR---CL 448 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG-GGS---SC
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc-hhh---hh
Confidence 44566666666665421111 1112235777777777776654444 355677777777777766542 222 23
Q ss_pred -CcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcc-cCCCCCCCEEEEecCch
Q 048834 1004 -PKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIE-LEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1004 -~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~-l~~l~~L~~L~l~~c~~ 1063 (1108)
++|+.|++++|. +..+|..+..+++|+.|++++|....+|.. +..+++|+.|+++++|-
T Consensus 449 ~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 449 PPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred cCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence 689999999884 778998888999999999999988888877 88899999999998774
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=8.7e-21 Score=208.51 Aligned_cols=246 Identities=20% Similarity=0.197 Sum_probs=204.2
Q ss_pred CCccEEecCCcccc---ccccccCCCCCCcEEeccC-CcCc-cCChhhccccccCEEEeccccccccccCCccccCcccc
Q 048834 784 QLLRYFGLRWTFLD---SIPESVGDLPCLETLDLKH-TNIT-SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNL 858 (1108)
Q Consensus 784 ~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 858 (1108)
.+++.|+++++.+. .+|..+.++++|++|++++ +.+. .+|..++++++|++|++++|.+.+.. |..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC--CGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC--CHHHhCCCCC
Confidence 58999999999887 6899999999999999995 7776 78999999999999999999876444 5668899999
Q ss_pred cccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcC-CCcEEEEEecCCCCCCCccccCCCCCccCccc
Q 048834 859 QTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLI-SLESLRLRSLNDFGEPSDLVIGPLNNHRALNE 937 (1108)
Q Consensus 859 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 937 (1108)
++|++..+......+..+..+++|+.|+++.+... +.+|..+..++ +|+.|.+++|....
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~------------------ 188 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTG------------------ 188 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEE------------------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc-CcCCHHHhhhhhcCcEEECcCCeeec------------------
Confidence 99999888777677888889999999999987664 46777788887 88888887765332
Q ss_pred eEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCC
Q 048834 938 LYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKEL 1017 (1108)
Q Consensus 938 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 1017 (1108)
.+|..+.. + +|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+. ...+..+++|++|++++|...
T Consensus 189 -----~~~~~~~~---l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 189 -----KIPPTFAN---L-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp -----ECCGGGGG---C-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCE
T ss_pred -----cCChHHhC---C-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee--cCcccccCCCCEEECcCCccc
Confidence 22222211 1 389999999988888888899999999999999998763 333778999999999999865
Q ss_pred CceeeCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCc
Q 048834 1018 REWTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1018 ~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
..+|..+..+++|+.|++++|.... +|.. ..+++|+.+++.+++
T Consensus 258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 5788889999999999999999886 7765 788999999999887
No 45
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.81 E-value=9.2e-19 Score=211.26 Aligned_cols=294 Identities=19% Similarity=0.285 Sum_probs=211.9
Q ss_pred cCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccc-cccC-ceeEEEEeccCCCcCHHHHH
Q 048834 359 LGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYI-RQNF-EYHAWANVDVSHDFDLRKVF 436 (1108)
Q Consensus 359 ~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~-~~~f-~~~~w~~v~~s~~~~~~~l~ 436 (1108)
+.....++||+..++.+.+.+....+.+.++.|+|++|+||||+|..++++... ...| +.+.|++ .+.. +...+.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~--~~~~-~~~~~~ 196 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS--VGKQ-DKSGLL 196 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE--EESC-CHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE--CCCC-chHHHH
Confidence 344567899999999999999876566789999999999999999999988655 7788 4789998 4443 223333
Q ss_pred HHH---HHHHhhhh---hhhhhhHHHHHHHHHHHhcC--CceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCch
Q 048834 437 INI---LEQVTRVK---IAEELALNELESRLIRLFQS--KRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREA 508 (1108)
Q Consensus 437 ~~i---l~~l~~~~---~~~~~~~~~l~~~l~~~l~~--k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~ 508 (1108)
..+ ...++... .....+.+.+...+...+.+ +++++|+||+|+...++ .+ ..+++|++|||..
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~----~l-----~~~~~ilvTsR~~ 267 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AF-----DSQCQILLTTRDK 267 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHH----TT-----CSSCEEEEEESCG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHH----Hh-----cCCCeEEEECCCc
Confidence 333 33333110 11224556677777777776 78999999999865443 23 3789999999999
Q ss_pred HHHHhcCCCcceEec---CCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCCChhHHH
Q 048834 509 FVARAFSPSIILLQL---RPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLLSTNRQIQNSDWE 585 (1108)
Q Consensus 509 ~v~~~~~~~~~~~~~---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l~~~~~~~~~~w~ 585 (1108)
.++..+.+ ..+.+ .+|+.++++++|...++.. .......+..++++|+|+|+|+..++..++... ..|.
T Consensus 268 ~~~~~~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~----~~w~ 339 (591)
T 1z6t_A 268 SVTDSVMG--PKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP----NRWE 339 (591)
T ss_dssp GGGTTCCS--CEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST----TCHH
T ss_pred HHHHhcCC--CceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc----hhHH
Confidence 87765542 33444 5899999999998877542 122345678899999999999999999998764 3577
Q ss_pred HHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCchhhhhHHhhccccchHhHHHHHhhhccCCCCcccchHHH
Q 048834 586 KVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDNLDASSIWGLGYKYLSAHLKACLHYLCLFPKSHEIPVRRL 665 (1108)
Q Consensus 586 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~l~~~~~~~~~f~~~~~~~~~~l 665 (1108)
..++.+...... . ...........+..++..+|+.|++..+.||.++++||.+..++...+
T Consensus 340 ~~l~~l~~~~~~---------~----------~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l 400 (591)
T 1z6t_A 340 YYLKQLQNKQFK---------R----------IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400 (591)
T ss_dssp HHHHHHHSCCCC---------C----------SSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHH
T ss_pred HHHHHHHHhHHH---------H----------hhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHH
Confidence 666554431100 0 000011111268889999999999999999999999999999998888
Q ss_pred HHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHccchhh
Q 048834 666 LQLWLAERFVTPSEGEEMTPEDRARKDFEQLEQRNMIEV 704 (1108)
Q Consensus 666 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 704 (1108)
..+|..+ ...+...+.+|.+.+++..
T Consensus 401 ~~l~~~~-------------~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 401 CILWDME-------------TEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp HHHHTCC-------------HHHHHHHHHHHHHTTSSEE
T ss_pred HHHhccC-------------HHHHHHHHHHHHhCcCeEE
Confidence 8888521 2346778999999988764
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=6.5e-19 Score=195.98 Aligned_cols=264 Identities=17% Similarity=0.067 Sum_probs=201.6
Q ss_pred CeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChhhccccccCEEEec
Q 048834 761 RLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMN 838 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 838 (1108)
++|++|++++|.+..++ ..+..+.+|++|++++|.+..+ |..++++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 45999999999988875 5799999999999999988877 7789999999999999999999998776 899999999
Q ss_pred cccccccccCCccccCcccccccccccccCCC--CChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKS--PPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+|.+.... +..+..+++|+.|++..+.... ..+..+..+ +|+.|+++.+... .+|..+. ++|+.|++++|.
T Consensus 132 ~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~--~l~~~~~--~~L~~L~l~~n~ 204 (332)
T 2ft3_A 132 DNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT--GIPKDLP--ETLNELHLDHNK 204 (332)
T ss_dssp SSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS--SCCSSSC--SSCSCCBCCSSC
T ss_pred CCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC--ccCcccc--CCCCEEECCCCc
Confidence 98775322 3447889999999988776532 445566666 9999999987653 4554332 689999999887
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCC--CCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCc
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLK--LDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGE 994 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 994 (1108)
....+ ...+..+++|+.|+++++--.... ....+++|+.|++++|.+. .+|..+..+++|+.|++++|.+...
T Consensus 205 i~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 205 IQAIE----LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCCCC----TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred CCccC----HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence 65543 234667889999999876322111 1233479999999999887 7888899999999999999988652
Q ss_pred eeeeCCC------CCCcccEEEeccCCCC--CceeeCCCcccccceEeecccC
Q 048834 995 EMTCGDG------GFPKLRVLKLWVQKEL--REWTIGKEAMPELRELEIRCCK 1039 (1108)
Q Consensus 995 ~~~~~~~------~~~~L~~L~l~~~~~l--~~lp~~~~~l~~L~~L~i~~c~ 1039 (1108)
....+. .++.|+.|++.+++.. ...|..+..+++|+.|++++|.
T Consensus 280 -~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 280 -GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 111121 2578999999999854 3345567789999999999885
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=8.9e-19 Score=194.77 Aligned_cols=268 Identities=18% Similarity=0.116 Sum_probs=211.0
Q ss_pred CCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEeccccccccccCCccccCccccccc
Q 048834 783 LQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTL 861 (1108)
Q Consensus 783 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 861 (1108)
..+|++++++++.+..+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+.... +..++.+++|+.|
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L 105 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERL 105 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEE
T ss_pred cCCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--HHHhcCCCCCCEE
Confidence 4489999999999999998764 689999999999998876 6999999999999999876433 5568899999999
Q ss_pred ccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEee
Q 048834 862 WSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLL 941 (1108)
Q Consensus 862 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~ 941 (1108)
++..+... .++..+. ++|+.|+++.+... ...+..+..+++|+.|++++|...... .....+..+++|+.|+++
T Consensus 106 ~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 106 YLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG--IENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp ECCSSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG--BCTTGGGGCTTCCEEECC
T ss_pred ECCCCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC--cChhhccCCCCcCEEECC
Confidence 99877544 3444333 79999999987664 445667889999999999988664311 112345678899999998
Q ss_pred cccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCcee
Q 048834 942 GKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWT 1021 (1108)
Q Consensus 942 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 1021 (1108)
++--..+.. ..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+. .+..+..+++|+.|++++|. +..+|
T Consensus 180 ~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~lp 256 (330)
T 1xku_A 180 DTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNK-LVKVP 256 (330)
T ss_dssp SSCCCSCCS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSC-CSSCC
T ss_pred CCccccCCc-cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCc-CccCC
Confidence 863222211 1237999999999998877788899999999999999988652 33356789999999999996 77899
Q ss_pred eCCCcccccceEeecccCCCCCCcc-cC------CCCCCCEEEEecCch
Q 048834 1022 IGKEAMPELRELEIRCCKKMKKPIE-LE------KLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1022 ~~~~~l~~L~~L~i~~c~~l~lp~~-l~------~l~~L~~L~l~~c~~ 1063 (1108)
..+..+++|+.|++++|+...+|.. +. ..++|+.|++.++|.
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 9999999999999999998775432 21 247899999999884
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=1.2e-18 Score=192.59 Aligned_cols=209 Identities=20% Similarity=0.253 Sum_probs=164.0
Q ss_pred CCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCccccccc
Q 048834 782 KLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTL 861 (1108)
Q Consensus 782 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 861 (1108)
...+++.|+++++.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++|.+. ..|..++++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l------ 149 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALPASIASL------ 149 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGC------
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCcHHHhcC------
Confidence 35789999999999999999999999999999999999999999999999999999988654 123333333
Q ss_pred ccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEee
Q 048834 862 WSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLL 941 (1108)
Q Consensus 862 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~ 941 (1108)
++|+.|++++| ......+.. +....+.
T Consensus 150 ------------------~~L~~L~L~~n-------------------------~~~~~~p~~----------~~~~~~~ 176 (328)
T 4fcg_A 150 ------------------NRLRELSIRAC-------------------------PELTELPEP----------LASTDAS 176 (328)
T ss_dssp ------------------TTCCEEEEEEE-------------------------TTCCCCCSC----------SEEEC-C
T ss_pred ------------------cCCCEEECCCC-------------------------CCccccChh----------Hhhccch
Confidence 33344443332 211111100 0000000
Q ss_pred cccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCcee
Q 048834 942 GKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWT 1021 (1108)
Q Consensus 942 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp 1021 (1108)
+. ...+++|+.|++++|.+. .+|..++.+++|+.|+|++|.+.+ ++..++.+++|++|++++|.....+|
T Consensus 177 ~~-------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 177 GE-------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp CC-------EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred hh-------hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhH
Confidence 10 011268999999999887 788889999999999999999876 56668899999999999999999999
Q ss_pred eCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCc
Q 048834 1022 IGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1022 ~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
..++.+++|+.|++++|.... +|..+..+++|+.|++++|+
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 999999999999999999998 89999999999999999998
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3.1e-18 Score=203.48 Aligned_cols=255 Identities=20% Similarity=0.119 Sum_probs=163.9
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
+++|+++++.+..+|..+. ++|++|++++|.+..+|. .+++|++|+|++|.++.+|. .+++|++|++++|.+
T Consensus 42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL 113 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC
T ss_pred CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC
Confidence 6666666666666666554 566666666666666665 45666666666666666665 556666666666654
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPS 922 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 922 (1108)
... +. .+++|+.|++..+... .++.. +++|+.|++++|... .+|. .+++|+.|.+++|.....+
T Consensus 114 ~~l---~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~--~l~~---~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 114 THL---PA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA--SLPA---LPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp CCC---CC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSCCC-
T ss_pred CCC---CC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC--CcCC---ccCCCCEEECCCCCCCCCc-
Confidence 321 11 3455666655554332 22222 366777777765442 3332 2356777777766554422
Q ss_pred ccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCC
Q 048834 923 DLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGG 1002 (1108)
Q Consensus 923 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 1002 (1108)
..+++|+.|+++++--.. +...+++|+.|++++|.+. .+|. .+++|+.|+|++|.+.+ ++ ..
T Consensus 178 -------~~~~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~--lp---~~ 239 (622)
T 3g06_A 178 -------MLPSGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS--LP---VL 239 (622)
T ss_dssp -------CCCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC--CC---CC
T ss_pred -------ccCCCCcEEECCCCCCCC--CCCccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc--CC---CC
Confidence 234667777776653221 1123468888888888776 3443 35788888888887765 33 55
Q ss_pred CCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCch
Q 048834 1003 FPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1003 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
+++|+.|++++|. +..+|. .+++|+.|++++|....+|..+.++++|+.|++++|+-
T Consensus 240 l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 240 PSELKELMVSGNR-LTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCcCcEEECCCCC-CCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 6888889888884 667776 57888889998887777888888888899999988873
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=4.6e-18 Score=196.37 Aligned_cols=262 Identities=21% Similarity=0.220 Sum_probs=169.2
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 840 (1108)
++|++|++++|.+..+| .++.+.+|++|++++|.+..+|..+ .+|++|++++|.++.+| .++++++|++|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCC
Confidence 35788888888777777 4777888888888888777777643 47788888888777777 5778888888888877
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE 920 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 920 (1108)
.+.+ . +. ...+|+.|++..+... .++ .++.+++|+.|+++++... .+|. .+++|+.|++++|.....
T Consensus 206 ~l~~-l--~~---~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~--~l~~---~~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 206 SLKK-L--PD---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK--TLPD---LPPSLEALNVRDNYLTDL 272 (454)
T ss_dssp CCSS-C--CC---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS--SCCS---CCTTCCEEECCSSCCSCC
T ss_pred cCCc-C--CC---CcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC--cccc---cccccCEEECCCCccccc
Confidence 6553 1 21 1246777777766544 444 3777788888888776542 3332 236788888877765542
Q ss_pred CCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccc-cccceeeeccccccCceeeeC
Q 048834 921 PSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQL-KELNILRLFAHSFMGEEMTCG 999 (1108)
Q Consensus 921 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~~ 999 (1108)
+. .+++|+.|+++++.-..+ ...+++|+.|++++|.+.+ +..+ ++|+.|++++|.+.+ ++.
T Consensus 273 ~~--------~~~~L~~L~ls~N~l~~l--~~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~--lp~- 334 (454)
T 1jl5_A 273 PE--------LPQSLTFLDVSENIFSGL--SELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE--LPA- 334 (454)
T ss_dssp CC--------CCTTCCEEECCSSCCSEE--SCCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC--CCC-
T ss_pred Cc--------ccCcCCEEECcCCccCcc--cCcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc--ccc-
Confidence 21 136777888776632111 1234678888888877653 2234 488999998888765 333
Q ss_pred CCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC---CCcccCCC-------------CCCCEEEEecCch
Q 048834 1000 DGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK---KPIELEKL-------------SSLKELTLTDMKK 1063 (1108)
Q Consensus 1000 ~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~---lp~~l~~l-------------~~L~~L~l~~c~~ 1063 (1108)
.+++|++|++++|. +..+|. .+++|+.|++++|.... +|..+..+ ++|+.|++++++-
T Consensus 335 --~~~~L~~L~L~~N~-l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 335 --LPPRLERLIASFNH-LAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL 408 (454)
T ss_dssp --CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred --cCCcCCEEECCCCc-cccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence 36889999998885 667776 47899999999998776 56666666 7889999988874
Q ss_pred H
Q 048834 1064 S 1064 (1108)
Q Consensus 1064 ~ 1064 (1108)
.
T Consensus 409 ~ 409 (454)
T 1jl5_A 409 R 409 (454)
T ss_dssp -
T ss_pred C
Confidence 3
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=1e-17 Score=205.33 Aligned_cols=350 Identities=22% Similarity=0.133 Sum_probs=201.4
Q ss_pred ccCCCeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChh-hccccccC
Q 048834 757 RRGYRLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKS-IWKVKTLR 833 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~ 833 (1108)
+.++++|++|+|++|.+..+|+ .|.+|++|++|+|++|.+..+|. .+.+|++|++|+|++|.++.+|.. ++++++|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 3456669999999998888865 58889999999999998888875 478899999999999988888764 78899999
Q ss_pred EEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCC---------------------------ceee
Q 048834 834 HLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGL---------------------------KKLG 886 (1108)
Q Consensus 834 ~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L---------------------------~~L~ 886 (1108)
+|++++|.+.. .+.+..++.+++|++|++..+......+..+..+.++ ..|.
T Consensus 152 ~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~ 230 (635)
T 4g8a_A 152 ELNVAHNLIQS-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 230 (635)
T ss_dssp EEECCSSCCCC-CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred eeccccCcccc-CCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhh
Confidence 99999887643 3345667888889888877664433223333222222 2233
Q ss_pred eeecccchhhHHHHHhhcCCCcEEEEEecCCCCC--CCccc---------------------------------------
Q 048834 887 LTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE--PSDLV--------------------------------------- 925 (1108)
Q Consensus 887 l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~--~~~~~--------------------------------------- 925 (1108)
+..+.......+..+..+..++...+........ .....
T Consensus 231 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 310 (635)
T 4g8a_A 231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS 310 (635)
T ss_dssp EESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred hhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence 3333222233444455555555444432211100 00000
Q ss_pred ----------cCCCCCccCccceEeecc----cC-----------------CCCCCCCCCCCcceEEEEeccCCCC----
Q 048834 926 ----------IGPLNNHRALNELYLLGK----LP-----------------EPLKLDKLPPNLRILTLSLSYLSED---- 970 (1108)
Q Consensus 926 ----------~~~~~~l~~L~~l~l~~~----~~-----------------~~~~~~~~~~~L~~L~l~~~~~~~~---- 970 (1108)
...+.....|+.|.+.++ ++ ........+++|+.|+++.|.+...
T Consensus 311 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 390 (635)
T 4g8a_A 311 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 390 (635)
T ss_dssp EEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECC
T ss_pred ccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccc
Confidence 000011122333333221 00 0000001123455555544433110
Q ss_pred ---------------------Ccc-------------------------ccccccccceeeeccccccCceeeeCCCCCC
Q 048834 971 ---------------------PMP-------------------------VLGQLKELNILRLFAHSFMGEEMTCGDGGFP 1004 (1108)
Q Consensus 971 ---------------------~~~-------------------------~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 1004 (1108)
.+. .+..+++|+.++++.|.+... .+.....++
T Consensus 391 ~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~ 469 (635)
T 4g8a_A 391 QSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLS 469 (635)
T ss_dssp HHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCT
T ss_pred cchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccc-cccccccch
Confidence 011 122333344444444433221 233445677
Q ss_pred cccEEEeccCCCCCc-eeeCCCcccccceEeecccCCCC-CCcccCCCCCCCEEEEecCchHH-HHHHHhhccccceeee
Q 048834 1005 KLRVLKLWVQKELRE-WTIGKEAMPELRELEIRCCKKMK-KPIELEKLSSLKELTLTDMKKSF-EYEVRGSMAKTVNIVI 1081 (1108)
Q Consensus 1005 ~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~~L~~L~l~~c~~~~-~~~~~~~~~~~~~~~~ 1081 (1108)
+|+.|++++|..... .|..+..+++|+.|++++|.... .|..+..+++|+.|++++|.-.. .......+.......-
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 888888888875554 45677889999999999998777 57778899999999999886321 1122223334444455
Q ss_pred CCCCCccccccccchh-hhhhhcccccC
Q 048834 1082 NPPQGKNRHWGETESS-ARHHKLLLESN 1108 (1108)
Q Consensus 1082 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 1108 (1108)
+..++.......+.+. ..+..|.|.+|
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 5555555443444443 56888888776
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=1.3e-18 Score=200.87 Aligned_cols=218 Identities=19% Similarity=0.087 Sum_probs=117.5
Q ss_pred eEEEEeCCCCCC-CCchhhcCCCCc-------------cEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhcc
Q 048834 763 LRVLDLEGVYKP-VLPETVGKLQLL-------------RYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWK 828 (1108)
Q Consensus 763 Lr~L~L~~~~~~-~lp~~i~~l~~L-------------~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~ 828 (1108)
|++|++++|.+. .+|++++.+.+| ++|++++|.+..+|.. .++|++|++++|.++.+|..
T Consensus 36 L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~--- 109 (454)
T 1jl5_A 36 KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL--- 109 (454)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---
T ss_pred hhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCccccc---
Confidence 555555544432 344444444443 4555555544444431 24555555555555555532
Q ss_pred ccccCEEEeccccccccccCCccccCc-ccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCC
Q 048834 829 VKTLRHLYMNDIYLQMSVQKPFVKYSL-TNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISL 907 (1108)
Q Consensus 829 l~~L~~L~l~~~~~~~~~~~~~~l~~l-~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L 907 (1108)
+++|++|++++|..... ..+ ++|+.|++..+.... ++ .++.+++|+.|+++++... .+|.. ..+|
T Consensus 110 ~~~L~~L~l~~n~l~~l-------~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~--~lp~~---~~~L 175 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKAL-------SDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK--KLPDL---PPSL 175 (454)
T ss_dssp CTTCCEEECCSSCCSCC-------CSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS--CCCCC---CTTC
T ss_pred cCCCcEEECCCCccCcc-------cCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc--ccCCC---cccc
Confidence 24555555555544321 111 466666666654432 33 4677777777777766442 33322 2467
Q ss_pred cEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeec
Q 048834 908 ESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLF 987 (1108)
Q Consensus 908 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 987 (1108)
+.|++++|..... +.+..+++|+.|+++++--.. ....+++|+.|++++|.+. .+| .++.+++|+.|+++
T Consensus 176 ~~L~L~~n~l~~l------~~~~~l~~L~~L~l~~N~l~~--l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 176 EFIAAGNNQLEEL------PELQNLPFLTAIYADNNSLKK--LPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp CEEECCSSCCSSC------CCCTTCTTCCEEECCSSCCSS--CCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred cEEECcCCcCCcC------ccccCCCCCCEEECCCCcCCc--CCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence 7777776654431 235667777777777653211 1123357788888777666 455 36777777777777
Q ss_pred cccccCceeeeCCCCCCcccEEEeccCC
Q 048834 988 AHSFMGEEMTCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1015 (1108)
+|.+.+ ++. .+++|+.|++++|.
T Consensus 246 ~N~l~~--l~~---~~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 246 NNLLKT--LPD---LPPSLEALNVRDNY 268 (454)
T ss_dssp SSCCSS--CCS---CCTTCCEEECCSSC
T ss_pred CCcCCc--ccc---cccccCEEECCCCc
Confidence 776654 221 23455555555543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=194.01 Aligned_cols=249 Identities=16% Similarity=0.117 Sum_probs=129.4
Q ss_pred eEEEEeCCCCCCCCch-hhcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCccCChh-hccccccCEEEecc
Q 048834 763 LRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMND 839 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 839 (1108)
|++|++++|.+..+|. .+..+++|++|++++|.+..++ ..+.++++|++|++++|.++.+|.. ++++++|++|++++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC
Confidence 5555555555554443 4555555555555555554442 3355555555555555555555444 45555555555555
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
|.+.. .+.. ..+..+++|+.|+++.+.......+..+..+++|+.|++++|....
T Consensus 134 n~l~~-l~~~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 134 NPYKT-LGET------------------------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp CCCSS-SCSS------------------------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCcc-cCch------------------------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 43321 1110 1344455555555554421101122334555566666666554332
Q ss_pred CCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccc-cccccccceeeeccccccCceee-
Q 048834 920 EPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPV-LGQLKELNILRLFAHSFMGEEMT- 997 (1108)
Q Consensus 920 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~- 997 (1108)
..+. .+. .+++|++|++++|.+. .++.. ++.+++|+.|++++|.+.+....
T Consensus 189 ~~~~----~l~----------------------~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 189 YEPK----SLK----------------------SIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp ECTT----TTT----------------------TCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred cCHH----HHh----------------------ccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc
Confidence 1110 011 1246666666666653 22322 33467777777777666542110
Q ss_pred -eCCCCCCcccEEEeccCCCC----CceeeCCCcccccceEeecccCCCCCCccc-CCCCCCCEEEEecCch
Q 048834 998 -CGDGGFPKLRVLKLWVQKEL----REWTIGKEAMPELRELEIRCCKKMKKPIEL-EKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 998 -~~~~~~~~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l-~~l~~L~~L~l~~c~~ 1063 (1108)
......+.++.+++.++..- ..+|..+..+++|+.|++++|....+|..+ ..+++|++|++++|+-
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 01123455666666665422 135555667888888888888777777664 7788888888887763
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=2.6e-18 Score=188.78 Aligned_cols=105 Identities=20% Similarity=0.221 Sum_probs=56.8
Q ss_pred CcceEEEEeccCCC-CCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCcee-eCCCcccccceE
Q 048834 956 NLRILTLSLSYLSE-DPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWT-IGKEAMPELREL 1033 (1108)
Q Consensus 956 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L 1033 (1108)
+|+.|++++|.+.+ ..|..+..+++|+.|++++|.+.+ ..+..+..+++|++|++++|. +..++ ..+..+++|+.|
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEE
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEe
Confidence 44444444444433 234445555666666666655543 123344556666666666655 33332 244556667777
Q ss_pred eecccCCCC-CCcccCCCC-CCCEEEEecCc
Q 048834 1034 EIRCCKKMK-KPIELEKLS-SLKELTLTDMK 1062 (1108)
Q Consensus 1034 ~i~~c~~l~-lp~~l~~l~-~L~~L~l~~c~ 1062 (1108)
++++|.... .|..+..++ +|+.|++++++
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 777666655 455555553 67777776655
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=9e-19 Score=193.07 Aligned_cols=242 Identities=13% Similarity=0.013 Sum_probs=183.2
Q ss_pred CCCeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEe
Q 048834 759 GYRLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYM 837 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 837 (1108)
.+++|++|+|++|.+..++ ..++.+++|++|++++|.+..+++ +..+++|++|++++|.++.+| .+++|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 4667999999999988876 679999999999999999887776 899999999999999888766 3489999999
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHH-hhcCCCcEEEEEecC
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWI-QDLISLESLRLRSLN 916 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l-~~l~~L~~L~l~~~~ 916 (1108)
++|.+.... ...+++|+.|++..+......+..+..+++|+.|+++++... ...|..+ ..+++|+.|++++|.
T Consensus 107 ~~n~l~~~~-----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 107 ANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp CSSCCSEEE-----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCCccCCcC-----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC-cccHHHHhhccCcCCEEECCCCc
Confidence 998776433 234677888888777665544556777788888888876543 2223333 356777777777665
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCcee
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEM 996 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 996 (1108)
.... +. ...+++|+.|++++|.+.. +|+.+..+++|+.|+|++|.+.. +
T Consensus 181 l~~~------------------------~~----~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~--l 229 (317)
T 3o53_A 181 IYDV------------------------KG----QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--I 229 (317)
T ss_dssp CCEE------------------------EC----CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--E
T ss_pred Cccc------------------------cc----ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc--h
Confidence 3321 00 0123688999998888874 45558889999999999998864 6
Q ss_pred eeCCCCCCcccEEEeccCCCC-CceeeCCCcccccceEeecccCCCC
Q 048834 997 TCGDGGFPKLRVLKLWVQKEL-REWTIGKEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 997 ~~~~~~~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~i~~c~~l~ 1042 (1108)
+..+..+++|+.|++++|+.. ..+|..+..+++|+.|++.+|+.+.
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 667788899999999998855 4566677788999999999887666
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=3.9e-18 Score=187.37 Aligned_cols=229 Identities=20% Similarity=0.161 Sum_probs=142.3
Q ss_pred CeeEEEEeCCCCCCCCchh-hcCCCCccEEecCCcccccc---ccccCCCCCCcEEeccCCcCccCChhhccccccCEEE
Q 048834 761 RLLRVLDLEGVYKPVLPET-VGKLQLLRYFGLRWTFLDSI---PESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLY 836 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 836 (1108)
++|++|++++|.+..+|.. +..+++|++|++++|.+..+ |..+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 3488888888888888765 57888888888888877654 5666778888888888888888888888888888888
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|....... ...+..+++|+.|++..+......+..+..+++|+.|+++++......+|..+..+
T Consensus 108 l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------------ 174 (306)
T 2z66_A 108 FQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL------------ 174 (306)
T ss_dssp CTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC------------
T ss_pred CCCCccccccc-chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC------------
Confidence 88876653221 12355666666666655544433444444555555555554433210122222222
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCcee
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEM 996 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 996 (1108)
++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+. .
T Consensus 175 --------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~ 215 (306)
T 2z66_A 175 --------------------------------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL-D 215 (306)
T ss_dssp --------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC-C
T ss_pred --------------------------------------cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc-C
Confidence 3566666666655544455566666666666666665442 2
Q ss_pred eeCCCCCCcccEEEeccCCCCCceeeCCCccc-ccceEeecccCCC
Q 048834 997 TCGDGGFPKLRVLKLWVQKELREWTIGKEAMP-ELRELEIRCCKKM 1041 (1108)
Q Consensus 997 ~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~i~~c~~l 1041 (1108)
+..+..+++|+.|++++|......|..+..++ +|+.|++++|+..
T Consensus 216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 22345566677777776664444455555553 6777777776543
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=4.8e-17 Score=199.37 Aligned_cols=326 Identities=19% Similarity=0.076 Sum_probs=196.2
Q ss_pred cccccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCcccccccc
Q 048834 723 DEYIECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIPE 801 (1108)
Q Consensus 723 ~~~~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~ 801 (1108)
+..+..|+.+....+.....++.. +.++++|++|+|++|.+..+|+ .|.+|.+|++|++++|.+..+|.
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~----------f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~ 141 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGA----------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 141 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTT----------TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTT
T ss_pred HhCCCCCCEEECCCCcCCCcChhH----------hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCCh
Confidence 345566766666555544444333 3456669999999999999875 57999999999999999998876
Q ss_pred -ccCCCCCCcEEeccCCcCc--cCChhhccccccCEEEeccccccccccCCccccCccccc-------------------
Q 048834 802 -SVGDLPCLETLDLKHTNIT--SLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQ------------------- 859 (1108)
Q Consensus 802 -~i~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~------------------- 859 (1108)
.++++++|++|+|++|.++ .+|..++.+++|++|++++|.+....+ ..+..+.++.
T Consensus 142 ~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 142 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC--TDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG--GGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc--ccccchhhhhhhhhhhhcccCcccccCcc
Confidence 4889999999999999887 467888999999999998876543211 1111111100
Q ss_pred --------ccccccc-------------------------c-----CC--------------------------------
Q 048834 860 --------TLWSLLI-------------------------G-----NK-------------------------------- 869 (1108)
Q Consensus 860 --------~L~~~~~-------------------------~-----~~-------------------------------- 869 (1108)
.+.+..+ . ..
T Consensus 220 ~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 299 (635)
T 4g8a_A 220 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII 299 (635)
T ss_dssp TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT
T ss_pred cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh
Confidence 0000000 0 00
Q ss_pred C------------------CChhhhccCcCCceeeeeecccch------h------------hHHHHHhhcCCCcEEEEE
Q 048834 870 S------------------PPLNWLESLRGLKKLGLTCHIASL------G------------QIAKWIQDLISLESLRLR 913 (1108)
Q Consensus 870 ~------------------~~~~~l~~l~~L~~L~l~~~~~~~------~------------~lp~~l~~l~~L~~L~l~ 913 (1108)
. .....+....+|+.|++..+.... . ..+.....+++|+.|.++
T Consensus 300 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 300 DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 379 (635)
T ss_dssp TTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECC
T ss_pred hhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhh
Confidence 0 000011222344444444321100 0 000001123444444444
Q ss_pred ecCCCCCC---------------------CccccCCCCCccCccceEe-------------------------ecccC--
Q 048834 914 SLNDFGEP---------------------SDLVIGPLNNHRALNELYL-------------------------LGKLP-- 945 (1108)
Q Consensus 914 ~~~~~~~~---------------------~~~~~~~~~~l~~L~~l~l-------------------------~~~~~-- 945 (1108)
.+...... ..........+++|+.+.+ +.+--
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 33221000 0000111222333333333 22210
Q ss_pred CCCCCCCCCCCcceEEEEeccCCC-CCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCcee-eC
Q 048834 946 EPLKLDKLPPNLRILTLSLSYLSE-DPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWT-IG 1023 (1108)
Q Consensus 946 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp-~~ 1023 (1108)
........+++|+.|++++|.... ..|..+..+++|+.|+|++|.+.+ ..+..++.+++|++|+|++|. +..++ ..
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~ 537 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNN-FFSLDTFP 537 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSC-CCBCCCGG
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCCc-CCCCChhH
Confidence 001122234688888888876443 356678889999999999998865 345668889999999999986 55554 45
Q ss_pred CCcccccceEeecccCCCC-CCcccCCC-CCCCEEEEecCc
Q 048834 1024 KEAMPELRELEIRCCKKMK-KPIELEKL-SSLKELTLTDMK 1062 (1108)
Q Consensus 1024 ~~~l~~L~~L~i~~c~~l~-lp~~l~~l-~~L~~L~l~~c~ 1062 (1108)
+..+++|+.|++++|.... .|..+..+ ++|+.|+++++|
T Consensus 538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 7889999999999999888 56677777 689999997654
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=186.81 Aligned_cols=231 Identities=17% Similarity=0.117 Sum_probs=174.5
Q ss_pred ccCCCeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCCh--hhcccccc
Q 048834 757 RRGYRLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPK--SIWKVKTL 832 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~--~i~~l~~L 832 (1108)
+.++++|++|++++|.+..++ ..++.+.+|++|++++|.+..+|.. +.++++|++|++++|.++.+|. .++++++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L 151 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence 345677999999999988874 5699999999999999999999877 8999999999999999999987 68899999
Q ss_pred CEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHH-hhcCCCcEEE
Q 048834 833 RHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWI-QDLISLESLR 911 (1108)
Q Consensus 833 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l-~~l~~L~~L~ 911 (1108)
++|++++|......+ +..++.+++|+.|++..+......+..+..+++|+.|+++++.. ..+|..+ ..+++|+.|+
T Consensus 152 ~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 152 QILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp CEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS--TTHHHHHHHHTTTEEEEE
T ss_pred cEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc--ccchhhhhhhcccccEEE
Confidence 999999985333332 44588999999999998877666678889999999999998875 4566544 4588999999
Q ss_pred EEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCC----CCccccccccccceeeec
Q 048834 912 LRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSE----DPMPVLGQLKELNILRLF 987 (1108)
Q Consensus 912 l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~ 987 (1108)
+++|.....+... +......+.++.+++.++.+.+ .+|..++.+++|+.|+|+
T Consensus 229 L~~n~l~~~~~~~-----------------------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 229 LRDTDLDTFHFSE-----------------------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp EESCBCTTCCCC-----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred CCCCccccccccc-----------------------cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 9988765432110 0001112456777777666543 245556677778888887
Q ss_pred cccccCceeeeC-CCCCCcccEEEeccCC
Q 048834 988 AHSFMGEEMTCG-DGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 988 ~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 1015 (1108)
+|.+.. ++.. ++.+++|++|++++|+
T Consensus 286 ~N~l~~--i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 286 RNQLKS--VPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp SSCCCC--CCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCc--cCHHHHhcCCCCCEEEeeCCC
Confidence 777653 4443 3667777777777775
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.9e-18 Score=201.70 Aligned_cols=239 Identities=13% Similarity=0.006 Sum_probs=186.4
Q ss_pred CCCeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEe
Q 048834 759 GYRLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYM 837 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l 837 (1108)
.+++|++|+|++|.+..+| ..++.+++|++|+|++|.+..+++ ++.+++|++|+|++|.++.+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 4557999999999988875 689999999999999999887766 9999999999999999887764 389999999
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHh-hcCCCcEEEEEecC
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQ-DLISLESLRLRSLN 916 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~-~l~~L~~L~l~~~~ 916 (1108)
++|.+.... ...+++|+.|++..+......+..++.+++|+.|+++++... +..|..+. .+++|+.|++++|.
T Consensus 107 ~~N~l~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 107 ANNNISRVS-----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp CSSCCCCEE-----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSC
T ss_pred cCCcCCCCC-----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhCCcccEEecCCCc
Confidence 999876433 234678888888887766655667778888888888877654 33454554 67888888887765
Q ss_pred CCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCcee
Q 048834 917 DFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEM 996 (1108)
Q Consensus 917 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 996 (1108)
....++ ...+++|+.|+|++|.+.+ +|+.++.+++|+.|+|++|.+.+ +
T Consensus 181 l~~~~~----------------------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~--l 229 (487)
T 3oja_A 181 IYDVKG----------------------------QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL--I 229 (487)
T ss_dssp CCEEEC----------------------------CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE--E
T ss_pred cccccc----------------------------cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc--c
Confidence 432110 0123689999999998875 55568899999999999998875 6
Q ss_pred eeCCCCCCcccEEEeccCCCC-CceeeCCCcccccceEeecccC
Q 048834 997 TCGDGGFPKLRVLKLWVQKEL-REWTIGKEAMPELRELEIRCCK 1039 (1108)
Q Consensus 997 ~~~~~~~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~i~~c~ 1039 (1108)
+..++.+++|+.|++++|+.. ..+|..+..+++|+.|.+..+.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccc
Confidence 777888999999999999855 3566677788899988887443
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=9e-17 Score=190.98 Aligned_cols=238 Identities=18% Similarity=0.091 Sum_probs=184.9
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 840 (1108)
++|++|+|++|.+..+|. .+++|++|++++|.+..+|. .+++|++|++++|.++.+|. .+++|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 459999999999888887 57899999999998888887 67899999999998888887 6788999999988
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE 920 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 920 (1108)
.+.. . +. .+++|+.|++..+... .++. .+.+|+.|+++++... .+| ..+++|+.|++++|.....
T Consensus 132 ~l~~-l--p~---~l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~--~l~---~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 132 QLTS-L--PV---LPPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT--SLP---MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CCSC-C--CC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCC
T ss_pred CCCc-C--CC---CCCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC--CCc---ccCCCCcEEECCCCCCCCC
Confidence 7653 2 22 2478888888877443 2332 3468888998877653 455 4568999999988876542
Q ss_pred CCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCC
Q 048834 921 PSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGD 1000 (1108)
Q Consensus 921 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 1000 (1108)
+. .+++|+.|.++++.-..+ ...+++|+.|++++|.+.. +| ..+++|+.|+|++|.+.. ++.
T Consensus 197 ~~--------~~~~L~~L~L~~N~l~~l--~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~--lp~-- 258 (622)
T 3g06_A 197 PT--------LPSELYKLWAYNNRLTSL--PALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS--LPM-- 258 (622)
T ss_dssp CC--------CCTTCCEEECCSSCCSSC--CCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC--CCC--
T ss_pred CC--------ccchhhEEECcCCccccc--CCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc--CCc--
Confidence 22 247888888887732222 2234799999999998874 55 567999999999998865 444
Q ss_pred CCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC
Q 048834 1001 GGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 1001 ~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~ 1042 (1108)
.+++|+.|++++|. +..+|..+..+++|+.|++++|+...
T Consensus 259 -~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -ccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCCCC
Confidence 67899999999996 77899989999999999999999876
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=189.08 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=65.1
Q ss_pred CeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l 837 (1108)
+++++|+|++|.+..++ ..+..+.+|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34777777777766654 55677777777777777666654 456677777777777777776665 3667777777777
Q ss_pred ccccccccccCCccccCccccccccccc
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLL 865 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~ 865 (1108)
++|.+.... +..+..+++|+.|++..
T Consensus 144 ~~N~i~~~~--~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 144 RNNPIESIP--SYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp CSCCCCEEC--TTTTTTCTTCCEEECCC
T ss_pred CCCcccccC--HHHhhhCcccCEeCCCC
Confidence 776554221 22344555555554443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=3.8e-17 Score=190.03 Aligned_cols=102 Identities=20% Similarity=0.212 Sum_probs=64.8
Q ss_pred eeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCccCChh-hccccccCEEEec
Q 048834 762 LLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMN 838 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 838 (1108)
+|++|+|++|.+..+ |..+..+.+|++|+|++|.+..++ ..+.++++|++|+|++|.++.+|.. ++.+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 477777777776665 455777777777777777666654 4566777777777777777766654 6667777777777
Q ss_pred cccccccccCCccccCccccccccccc
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLL 865 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~ 865 (1108)
+|.+.... +..+.++++|+.|++..
T Consensus 156 ~N~l~~~~--~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 156 NNPIESIP--SYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp SCCCCEEC--TTTTTTCTTCCEEECCC
T ss_pred CCCcceeC--HhHHhcCCcccEEeCCC
Confidence 76554211 22244455555554443
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=6.7e-18 Score=183.30 Aligned_cols=221 Identities=19% Similarity=0.087 Sum_probs=99.0
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccC-ChhhccccccCEEEecccc
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSL-PKSIWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 841 (1108)
++++.++..+..+|..+ ..+|++|+++++.+..+|. .+.++++|++|++++|.++.+ |..++.+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34444444444444332 2345555555555444442 344555555555555544433 3344555555555555443
Q ss_pred ccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCC
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEP 921 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 921 (1108)
.....+ +..+..+++|+.|++..+......+..+..+++|+.|+++++... ...+..+..+++|+.|++++|.....+
T Consensus 92 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 92 QLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccC
Confidence 111111 222344444444444443333223333444455555555544332 111122344455555555544322111
Q ss_pred CccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCC
Q 048834 922 SDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDG 1001 (1108)
Q Consensus 922 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 1001 (1108)
.. .+. .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+. .+..+.
T Consensus 170 ~~----~~~----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~ 222 (285)
T 1ozn_A 170 ER----AFR----------------------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALA 222 (285)
T ss_dssp TT----TTT----------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-CHHHHT
T ss_pred HH----Hhc----------------------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC-CHHHcc
Confidence 00 011 113555555555555544455555666666666666655441 222345
Q ss_pred CCCcccEEEeccCC
Q 048834 1002 GFPKLRVLKLWVQK 1015 (1108)
Q Consensus 1002 ~~~~L~~L~l~~~~ 1015 (1108)
.+++|+.|++++++
T Consensus 223 ~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 223 PLRALQYLRLNDNP 236 (285)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cCcccCEEeccCCC
Confidence 55666666666554
No 64
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.70 E-value=1.1e-18 Score=210.67 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=117.6
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccc-ccCCc-ceeEEEcCCCCCHHHHHHHH---HHHhCC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDI-KNHFQ-CRAWFLVPPRLDKRELAINI---LNQFAP 244 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~-~~~F~-~~~~~~~s~~~~~~~l~~~i---~~~~~~ 244 (1108)
+.+.+.|.++|.....+.++|+|+||||+||||||+.+|++.++ ..+|. .++|++++.. +...+...+ ...+..
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~ 208 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 208 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhcc
Confidence 57788888888876667899999999999999999999988666 78994 7899999765 334444443 334432
Q ss_pred Cch--hHHHHhhcchHHHHHHHccC--CeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhhccccccccc
Q 048834 245 TDV--ELEEKLLESPQTVVHNYLIH--KRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMHRNLNFFGGD 320 (1108)
Q Consensus 245 ~~~--~~~~~~~~~l~~~l~~~l~~--kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~~~~~~~~~~ 320 (1108)
... .....+.+.+...+++.+.+ +++||||||||+..+|+.+ ++||+||||||+..++..+.. ..
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~----~~ 277 (591)
T 1z6t_A 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMG----PK 277 (591)
T ss_dssp SCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCS----CE
T ss_pred ccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcCC----Cc
Confidence 110 01111234456667777765 7999999999998776543 679999999999999876532 33
Q ss_pred cch---hHHhhhcccccccccccc
Q 048834 321 LNL---SFKEMKARYPLHEAVVVR 341 (1108)
Q Consensus 321 ~~~---~~l~~~~~~~Lf~~~a~~ 341 (1108)
|.+ .+++.++++.||...++.
T Consensus 278 ~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 278 YVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp EEEECCSSCCHHHHHHHHHHHHTS
T ss_pred eEeecCCCCCHHHHHHHHHHHhCC
Confidence 444 489999999999887753
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=6.6e-19 Score=194.15 Aligned_cols=255 Identities=14% Similarity=0.015 Sum_probs=139.5
Q ss_pred eEEEEeCCCCCCCCchh-hcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPET-VGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 840 (1108)
++.++++.+.+...+.. +..+++|++|++++|.+..++ ..+.++++|++|+|++|.++.+++ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 67777777766555443 456779999999999988776 578999999999999999887665 899999999999998
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE 920 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 920 (1108)
.+.. +...++|+.|++..+......+ ..+++|+.|+++++... ...+..+..+++|+.|++++|.....
T Consensus 91 ~l~~-------l~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 91 YVQE-------LLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp EEEE-------EEECTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cccc-------ccCCCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCC-CccchhhhccCCCCEEECCCCCCCcc
Confidence 7653 2234666666665553322111 12344555555444332 11122233334444444443322211
Q ss_pred CCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCC
Q 048834 921 PSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGD 1000 (1108)
Q Consensus 921 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 1000 (1108)
.+.. +...+++|+.|++++|.+... + ....+++|+.|+|++|.+.+ ++..+
T Consensus 160 ~~~~-------------------------~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~--l~~~~ 210 (317)
T 3o53_A 160 NFAE-------------------------LAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF--MGPEF 210 (317)
T ss_dssp EGGG-------------------------GGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE--ECGGG
T ss_pred cHHH-------------------------HhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc--chhhh
Confidence 0000 000113455555554444321 1 12235555555555555443 33334
Q ss_pred CCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCC-C-CCcccCCCCCCCEEEEe
Q 048834 1001 GGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKM-K-KPIELEKLSSLKELTLT 1059 (1108)
Q Consensus 1001 ~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l-~-lp~~l~~l~~L~~L~l~ 1059 (1108)
..+++|+.|++++|. +..+|..+..+++|+.|++++|+.. . +|..+..+++|+.|++.
T Consensus 211 ~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 211 QSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 445555555555553 4445555555555555555555554 1 44444444444444443
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=185.20 Aligned_cols=122 Identities=20% Similarity=0.181 Sum_probs=85.3
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCccCC-hhhccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSLP-KSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~ 840 (1108)
.+.++.++..+..+|..+. .+|++|+|++|.+..++ ..+.++++|++|+|++|.++.++ ..+.++++|++|++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 5678888888888988665 68999999999888775 67889999999999999888766 45888999999999888
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeee
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLT 888 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~ 888 (1108)
.+.... +..+..+++|+.|++..+.........+..+++|+.|+++
T Consensus 123 ~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 123 RLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp CCSSCC--TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred cCCeeC--HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 665321 2235566666666655554332222234444444444444
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=1.2e-16 Score=185.86 Aligned_cols=243 Identities=20% Similarity=0.175 Sum_probs=142.8
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCC-hhhccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLP-KSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~ 840 (1108)
.+.++.++..+..+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++|.++.++ ..+.++++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 5678888888888987664 6899999999988877 567889999999999999888665 56888999999999988
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE 920 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 920 (1108)
.+.... +..+..+++|+.|++..+.........+.. +++|+.|++++|+....
T Consensus 134 ~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 134 WLTVIP--SGAFEYLSKLRELWLRNNPIESIPSYAFNR-------------------------VPSLMRLDLGELKKLEY 186 (452)
T ss_dssp CCSBCC--TTTSSSCTTCCEEECCSCCCCEECTTTTTT-------------------------CTTCCEEECCCCTTCCE
T ss_pred cCCccC--hhhhcccCCCCEEECCCCCcceeCHhHHhc-------------------------CCcccEEeCCCCCCccc
Confidence 765321 223555666666665554433222223334 44555555544333221
Q ss_pred CCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCC
Q 048834 921 PSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGD 1000 (1108)
Q Consensus 921 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 1000 (1108)
.+.. .+..+ ++|+.|++++|.+.. + +.+..+++|+.|+|++|.+.+ ..+..+
T Consensus 187 i~~~---~~~~l----------------------~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~ 238 (452)
T 3zyi_A 187 ISEG---AFEGL----------------------FNLKYLNLGMCNIKD-M-PNLTPLVGLEELEMSGNHFPE-IRPGSF 238 (452)
T ss_dssp ECTT---TTTTC----------------------TTCCEEECTTSCCSS-C-CCCTTCTTCCEEECTTSCCSE-ECGGGG
T ss_pred cChh---hccCC----------------------CCCCEEECCCCcccc-c-ccccccccccEEECcCCcCcc-cCcccc
Confidence 1110 11111 345555555554432 1 224455556666665555543 133445
Q ss_pred CCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCc-ccCCCCCCCEEEEecCc
Q 048834 1001 GGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPI-ELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1001 ~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~-~l~~l~~L~~L~l~~c~ 1062 (1108)
..+++|+.|++++|......|..+..+++|+.|++++|....+|. .+..+++|+.|+++++|
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 555566666665554222223344555666666666665544332 33555666666665544
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=5.4e-18 Score=186.33 Aligned_cols=245 Identities=18% Similarity=0.142 Sum_probs=129.2
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCcccc--ccccccC-------CCCCCcEEeccCCcCc-cCChhh--cc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLD--SIPESVG-------DLPCLETLDLKHTNIT-SLPKSI--WK 828 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~--~lp~~i~-------~l~~L~~L~L~~~~l~-~lp~~i--~~ 828 (1108)
++|++|+++++.+ .+|..+... |++|+++++.+. .+|..+. ++++|++|+|++|.++ .+|..+ +.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 3366666666666 566555443 666666666553 3454444 5666666666666665 455554 66
Q ss_pred ccccCEEEeccccccccccCCccccCc-----ccccccccccccCCCCChhhhccCcCCceeeeeecccch-hhHHHHH-
Q 048834 829 VKTLRHLYMNDIYLQMSVQKPFVKYSL-----TNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASL-GQIAKWI- 901 (1108)
Q Consensus 829 l~~L~~L~l~~~~~~~~~~~~~~l~~l-----~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~lp~~l- 901 (1108)
+++|++|++++|.+... +..++.+ ++|++|++..+......+..++.+++|+.|+++++.... ..+|..+
T Consensus 120 l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred CCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 66666666666655432 2334444 566666666555544444566667777777777665321 1134444
Q ss_pred -hhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCc-ccccccc
Q 048834 902 -QDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPM-PVLGQLK 979 (1108)
Q Consensus 902 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~ 979 (1108)
..+++|+.|++++|.....+ .. +. .....+++|+.|++++|.+.+..| ..+..++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~-~~--------------------~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPS-GV--------------------CS--ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHH-HH--------------------HH--HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred hccCCCCCEEECCCCcCcchH-HH--------------------HH--HHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 55666666666655432100 00 00 000001355555555555554332 2334455
Q ss_pred ccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCC
Q 048834 980 ELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKK 1040 (1108)
Q Consensus 980 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~ 1040 (1108)
+|+.|+|++|.+.. ++..+. ++|++|+++++. +..+|. +..+++|+.|++++|+.
T Consensus 254 ~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp TCCEEECTTSCCSS--CCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCCEEECCCCccCh--hhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCCC
Confidence 66666666665542 333332 556666666554 444444 55566666666666554
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=6.1e-19 Score=206.66 Aligned_cols=83 Identities=20% Similarity=0.100 Sum_probs=41.9
Q ss_pred cccceeeeccccccCce---eeeCCCCCCcccEEEeccCCCCCce-eeCC----C-cccccceEeecccCCC-----CCC
Q 048834 979 KELNILRLFAHSFMGEE---MTCGDGGFPKLRVLKLWVQKELREW-TIGK----E-AMPELRELEIRCCKKM-----KKP 1044 (1108)
Q Consensus 979 ~~L~~L~L~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~l-p~~~----~-~l~~L~~L~i~~c~~l-----~lp 1044 (1108)
++|+.|++++|.+.... ++..+..+++|++|++++|. +... +..+ . ..++|+.|++++|... .+|
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH
Confidence 35555555555443321 12222334566666666553 2221 1111 1 1456777777766655 245
Q ss_pred cccCCCCCCCEEEEecCc
Q 048834 1045 IELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1045 ~~l~~l~~L~~L~l~~c~ 1062 (1108)
..+..+++|++|++++|+
T Consensus 392 ~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 392 ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHCCCCCEEECCSSS
T ss_pred HHHHhCCCccEEECCCCC
Confidence 555566677777777665
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=2.1e-19 Score=210.64 Aligned_cols=299 Identities=19% Similarity=0.096 Sum_probs=143.5
Q ss_pred eeEEEEeCCCCCC-----CCchhhcCCCCccEEecCCcccccc-----ccc-cCCCCCCcEEeccCCcCcc-----CChh
Q 048834 762 LLRVLDLEGVYKP-----VLPETVGKLQLLRYFGLRWTFLDSI-----PES-VGDLPCLETLDLKHTNITS-----LPKS 825 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~l-----p~~-i~~l~~L~~L~L~~~~l~~-----lp~~ 825 (1108)
+|++|++++|.+. .+|..+..+++|++|++++|.+... ... ...+.+|++|++++|.++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 3556666665544 2345555556666666665544321 111 1124456666666655442 3444
Q ss_pred hccccccCEEEeccccccccccCCcccc-----CcccccccccccccCCCC----ChhhhccCcCCceeeeeecccchh-
Q 048834 826 IWKVKTLRHLYMNDIYLQMSVQKPFVKY-----SLTNLQTLWSLLIGNKSP----PLNWLESLRGLKKLGLTCHIASLG- 895 (1108)
Q Consensus 826 i~~l~~L~~L~l~~~~~~~~~~~~~~l~-----~l~~L~~L~~~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~- 895 (1108)
+..+++|++|++++|.+.... ...+. .+++|+.|++..+..... ++..+..+++|+.|+++++.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAG--VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHH--HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HhhCCCCCEEECcCCCcchHH--HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 555566666666655443211 01111 234566666555544332 344455566666666665543211
Q ss_pred --hHHHHH-hhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCC-------CCCCCCCCcceEEEEec
Q 048834 896 --QIAKWI-QDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPL-------KLDKLPPNLRILTLSLS 965 (1108)
Q Consensus 896 --~lp~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~~ 965 (1108)
.++..+ ..+++|++|++++|.............+..+++|+.|+++++--... .....+++|+.|++++|
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 111111 23556666666655433211000111233356666666655411000 00011146777777776
Q ss_pred cCCCC----CccccccccccceeeeccccccCceee---eCC-CCCCcccEEEeccCCCCC----ceeeCCCcccccceE
Q 048834 966 YLSED----PMPVLGQLKELNILRLFAHSFMGEEMT---CGD-GGFPKLRVLKLWVQKELR----EWTIGKEAMPELREL 1033 (1108)
Q Consensus 966 ~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~~-~~~~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L 1033 (1108)
.+... ++..+..+++|+.|+|++|.+.+.... ..+ ...++|++|++++|..-. .+|..+..+++|++|
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 403 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEE
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEE
Confidence 65543 234445567777777777655432111 111 125577777777775222 455555566777777
Q ss_pred eecccCCCC-----CCccc-CCCCCCCEEEEecCc
Q 048834 1034 EIRCCKKMK-----KPIEL-EKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1034 ~i~~c~~l~-----lp~~l-~~l~~L~~L~l~~c~ 1062 (1108)
++++|+... +...+ ....+|+.|.+.++.
T Consensus 404 ~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 404 DLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp ECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred ECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 777776543 11111 123456666666554
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=1.2e-17 Score=195.00 Aligned_cols=240 Identities=15% Similarity=0.048 Sum_probs=136.1
Q ss_pred CCCCchhhcCCC----CccEEecCCccccccc-cccCCCCCCcEEeccCCcCccCChhhccccccCEEEecccccccccc
Q 048834 773 KPVLPETVGKLQ----LLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQ 847 (1108)
Q Consensus 773 ~~~lp~~i~~l~----~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~ 847 (1108)
...+|..+..+. +|++|+|++|.+..+| ..++.+++|++|+|++|.++.+++ ++.+++|++|++++|.+...
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-- 95 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE--
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC--
Confidence 445676666655 8999999999988775 689999999999999999986665 99999999999999876532
Q ss_pred CCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccC
Q 048834 848 KPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIG 927 (1108)
Q Consensus 848 ~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 927 (1108)
...++|+.|++..+......+ ..+++|+.|+++++... +..|..++.+++|+.|++++|.....++..
T Consensus 96 -----~~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--- 163 (487)
T 3oja_A 96 -----LVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAE--- 163 (487)
T ss_dssp -----EECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCC-SGGGBCGGGGSSEEEEECTTSCCCEEEGGG---
T ss_pred -----CCCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCCCC-CCCchhhcCCCCCCEEECCCCCCCCcChHH---
Confidence 223667777666654432211 12345555555554432 222333444445555555444322211000
Q ss_pred CCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCccc
Q 048834 928 PLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLR 1007 (1108)
Q Consensus 928 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 1007 (1108)
+...+++|+.|+|++|.+.+. +....+++|+.|+|++|.+.+ ++..+..+++|+
T Consensus 164 ----------------------l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~ 217 (487)
T 3oja_A 164 ----------------------LAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVT 217 (487)
T ss_dssp ----------------------GGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCS
T ss_pred ----------------------HhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC--CCHhHcCCCCcc
Confidence 000113555555555554422 112235555555555555543 333345555555
Q ss_pred EEEeccCCCCCceeeCCCcccccceEeecccCCCC--CCcccCCCCCCC
Q 048834 1008 VLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK--KPIELEKLSSLK 1054 (1108)
Q Consensus 1008 ~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~--lp~~l~~l~~L~ 1054 (1108)
.|++++|. +..+|..+..+++|+.|++++|+... +|..+..++.|+
T Consensus 218 ~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 218 WISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp EEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred EEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 55555554 44455555555555555555555551 343344444333
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=4.5e-17 Score=176.80 Aligned_cols=246 Identities=20% Similarity=0.174 Sum_probs=179.7
Q ss_pred CeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCc-CccC-ChhhccccccCEEE
Q 048834 761 RLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTN-ITSL-PKSIWKVKTLRHLY 836 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~ 836 (1108)
++|++|+++++.+..+| ..+..+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45999999999998887 4689999999999999988877 7789999999999999996 8877 66789999999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHH-HHhhcCCCcEEEEEec
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAK-WIQDLISLESLRLRSL 915 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~-~l~~l~~L~~L~l~~~ 915 (1108)
+++|.+.... +..+..+++|+.|++..+......+..+..+++|+.|+++++... .+|. .+..+++|+.|++++|
T Consensus 112 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 112 LDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp CTTSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCEEC--HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc--ccCHHHhcCccccCEEECCCC
Confidence 9999876432 455788999999999888766555566889999999999987653 3443 4778899999999887
Q ss_pred CCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCce
Q 048834 916 NDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEE 995 (1108)
Q Consensus 916 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 995 (1108)
......+ ..+ ..+++|+.|++++|.+.+..+..+..+++|+.|+|++|++....
T Consensus 188 ~l~~~~~-----------------------~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 188 RVAHVHP-----------------------HAF---RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp CCCEECT-----------------------TTT---TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cccccCH-----------------------hHc---cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 6543211 111 11268999999999888666667889999999999999875321
Q ss_pred eeeCCCCCCcccEEEeccCCCCCceeeCCC--cccccceEeeccc
Q 048834 996 MTCGDGGFPKLRVLKLWVQKELREWTIGKE--AMPELRELEIRCC 1038 (1108)
Q Consensus 996 ~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~--~l~~L~~L~i~~c 1038 (1108)
.. ...+..|+.+........-..|..+. .+..+...++.+|
T Consensus 242 -~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 242 -RA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp -GG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred -Cc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 00 01112344444443332223444332 3455555555555
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=5e-18 Score=186.64 Aligned_cols=246 Identities=18% Similarity=0.201 Sum_probs=162.4
Q ss_pred hhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCc--cCChhhc-------cccccCEEEeccccccccccCC
Q 048834 779 TVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNIT--SLPKSIW-------KVKTLRHLYMNDIYLQMSVQKP 849 (1108)
Q Consensus 779 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~~~~ 849 (1108)
.++.+.+|++|+++++.+ .+|..+... |++|+|+++.+. .+|..+. ++++|++|++++|.+.+..+..
T Consensus 38 ~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 345667788888888877 777766544 777788777664 4666665 6778888888777665433211
Q ss_pred ccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhc-----CCCcEEEEEecCCCCCCCcc
Q 048834 850 FVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDL-----ISLESLRLRSLNDFGEPSDL 924 (1108)
Q Consensus 850 ~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l-----~~L~~L~l~~~~~~~~~~~~ 924 (1108)
..++.+++|+ .|+++++... .+|..+..+ ++|++|++++|.....++
T Consensus 115 ~~~~~l~~L~------------------------~L~Ls~N~l~--~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-- 166 (312)
T 1wwl_A 115 LLEATGPDLN------------------------ILNLRNVSWA--TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC-- 166 (312)
T ss_dssp SSSCCSCCCS------------------------EEEEESCBCS--SSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT--
T ss_pred HHHhcCCCcc------------------------EEEccCCCCc--chhHHHHHHHHhhcCCCcEEEeeCCCCccchH--
Confidence 1114444444 4444444332 113333333 566666666655443321
Q ss_pred ccCCCCCccCccceEeeccc-------CCCCCCCCCCCCcceEEEEeccCCC--CCc-cccccccccceeeeccccccCc
Q 048834 925 VIGPLNNHRALNELYLLGKL-------PEPLKLDKLPPNLRILTLSLSYLSE--DPM-PVLGQLKELNILRLFAHSFMGE 994 (1108)
Q Consensus 925 ~~~~~~~l~~L~~l~l~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~--~~~-~~~~~l~~L~~L~L~~~~~~~~ 994 (1108)
..+..+++|+.|+++++- +..... ..+++|++|++++|.+.. .++ ..+..+++|+.|+|++|.+.+.
T Consensus 167 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 167 --EQVRVFPALSTLDLSDNPELGERGLISALCP-LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp --TTCCCCSSCCEEECCSCTTCHHHHHHHHSCT-TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred --HHhccCCCCCEEECCCCCcCcchHHHHHHHh-ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 234455666666665542 111111 233699999999998763 122 2235789999999999998774
Q ss_pred eeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 995 EMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 995 ~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
........+++|++|++++|. +..+|..+. ++|+.|++++|....+|. +..+++|+.|++++++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 322345568999999999997 668888765 899999999998887876 8889999999999887
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=3.6e-17 Score=198.29 Aligned_cols=296 Identities=15% Similarity=0.038 Sum_probs=154.1
Q ss_pred CeeEEEEeCCCCCC-----CCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCc-C---ccCChhhccccc
Q 048834 761 RLLRVLDLEGVYKP-----VLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTN-I---TSLPKSIWKVKT 831 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~-----~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~-l---~~lp~~i~~l~~ 831 (1108)
++|++|+++++.+. .++..+..+++|++|++++|.+..+|..+.++++|++|+++.+. . ...+..+..+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 33555555544443 12233344455555555555444444444455555555554321 0 122233444455
Q ss_pred cCEEEeccccccccccCCccccCcccccccccccccCCCC-ChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEE
Q 048834 832 LRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSP-PLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESL 910 (1108)
Q Consensus 832 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L 910 (1108)
|+.|++.++. ....+..+..+++|+.|++..+..... ....+..+++|+.|+++. ......++.....+++|++|
T Consensus 272 L~~L~l~~~~---~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 272 LCRLGLSYMG---PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp CCEEEETTCC---TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEE
T ss_pred ccccCccccc---hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEE
Confidence 5555544421 112233455667777777766652211 223356677777777773 33324555555667778888
Q ss_pred EEEe----------cCCCCCCCccccCCCCCccCccceEeecccCCCC---CCCCCCCCcceEEEEec----cCCCC---
Q 048834 911 RLRS----------LNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPL---KLDKLPPNLRILTLSLS----YLSED--- 970 (1108)
Q Consensus 911 ~l~~----------~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---~~~~~~~~L~~L~l~~~----~~~~~--- 970 (1108)
++.+ |+..+.... ......+++|+.|.+...--... .+...+++|+.|+++.| .+.+.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~--~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGL--IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHH--HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EeecCccccccccccCccCHHHH--HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 8873 433321100 00112356777777733210000 01111357888888743 23221
Q ss_pred --Cccccccccccceeeecccc--ccCceeeeCCCCCCcccEEEeccCCCCC-ceeeCCCcccccceEeecccCCCC--C
Q 048834 971 --PMPVLGQLKELNILRLFAHS--FMGEEMTCGDGGFPKLRVLKLWVQKELR-EWTIGKEAMPELRELEIRCCKKMK--K 1043 (1108)
Q Consensus 971 --~~~~~~~l~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L~i~~c~~l~--l 1043 (1108)
++..+.++++|+.|+|+.|. +....+......+++|+.|++++|..-. .++..+..+++|+.|++++|+... +
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 12224567888888886543 3222122222347788888888776222 234444567888888888888432 4
Q ss_pred CcccCCCCCCCEEEEecCc
Q 048834 1044 PIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1044 p~~l~~l~~L~~L~l~~c~ 1062 (1108)
+.....+++|++|++++|+
T Consensus 506 ~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCccCeeECcCCc
Confidence 4445667888888888887
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=5.3e-17 Score=181.21 Aligned_cols=231 Identities=17% Similarity=0.149 Sum_probs=121.5
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccc--cccccCCCCCCcEEeccCCcCc-cCChhhccccccCEEEecc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDS--IPESVGDLPCLETLDLKHTNIT-SLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|+++++.+...+..+..+.+|++|++++|.+.. +|..+.++++|++|++++|.++ ..|..++++++|++|++++
T Consensus 72 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~ 151 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151 (336)
T ss_dssp CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred ceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence 555555555444444444445555555555554431 4444455555555555555444 3444444555555555554
Q ss_pred ccccccccCCccccCcccccccccccccCCC--CChhhhccCcCCceeeeeec-ccchhhHHHHHhhcC-CCcEEEEEec
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKS--PPLNWLESLRGLKKLGLTCH-IASLGQIAKWIQDLI-SLESLRLRSL 915 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~lp~~l~~l~-~L~~L~l~~~ 915 (1108)
| .... .++..+..+++|+.|+++++ ......++..+..++ +|++|++++|
T Consensus 152 ~--------------------------~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 152 C--------------------------SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp C--------------------------BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred C--------------------------CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 4 2111 13334556667777777766 444334666667777 7777777665
Q ss_pred CC-CCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEecc-CCCCCccccccccccceeeeccccccC
Q 048834 916 ND-FGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSY-LSEDPMPVLGQLKELNILRLFAHSFMG 993 (1108)
Q Consensus 916 ~~-~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~ 993 (1108)
.. ... +.+|. ....+++|+.|++++|. +.+..+..+..+++|+.|++++|....
T Consensus 206 ~~~~~~---------------------~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 206 RKNLQK---------------------SDLST---LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp GGGSCH---------------------HHHHH---HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred cccCCH---------------------HHHHH---HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 31 110 00000 00011467777777776 444556667777888888887774222
Q ss_pred ceeeeCCCCCCcccEEEeccCCCCCceee-CCCcc-cccceEeecccCCCC-CCcccC
Q 048834 994 EEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAM-PELRELEIRCCKKMK-KPIELE 1048 (1108)
Q Consensus 994 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l-~~L~~L~i~~c~~l~-lp~~l~ 1048 (1108)
......++.+++|+.|++++| ++. .+..+ .+|..|++++|.... .|..+.
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 111123556788888888877 222 12223 346667777666665 454443
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=1.3e-16 Score=193.46 Aligned_cols=324 Identities=13% Similarity=0.005 Sum_probs=222.3
Q ss_pred ccccceEEeecccCCCCCchhHHHHHhhhhcccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCcc-c---ccccc
Q 048834 726 IECLHSYLSFDKRMGDKPADEVGNLLNKMINRRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTF-L---DSIPE 801 (1108)
Q Consensus 726 ~~~l~~ll~~~~~~~~~~~~~~~~l~~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~-i---~~lp~ 801 (1108)
+..|+.+....+.........+..+.. ++++|++|++++|.+..+|..+..+++|+.|+++.+. . ...+.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~------~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 264 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIAR------NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHH------HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSS
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHh------hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHH
Confidence 345555533333322233344444443 4677999999999988999999999999999998542 1 34566
Q ss_pred ccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcC
Q 048834 802 SVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRG 881 (1108)
Q Consensus 802 ~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~ 881 (1108)
.+..+++|++|+++++....+|..+..+++|++|++++|...... ....+..+++|+.|++..+-....+......+++
T Consensus 265 ~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED-HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH-HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH-HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 788999999999998866788888999999999999998743322 2233678999999988743333334445567899
Q ss_pred Cceeeeee-----------cccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCC-CccCccceEeeccc-CCCC
Q 048834 882 LKKLGLTC-----------HIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLN-NHRALNELYLLGKL-PEPL 948 (1108)
Q Consensus 882 L~~L~l~~-----------~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~-~~~~ 948 (1108)
|++|+++. +......++.....+++|++|.+..+.. +. ..+..+. .+++|+.|+++++- ...+
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l-~~---~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI-TN---ESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC-CH---HHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc-cH---HHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 99999993 4444345666667799999999954433 22 1122222 27789999997531 1111
Q ss_pred CC----------CCCCCCcceEEEEecc--CCCCCccccc-cccccceeeeccccccCceeeeCCCCCCcccEEEeccCC
Q 048834 949 KL----------DKLPPNLRILTLSLSY--LSEDPMPVLG-QLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 949 ~~----------~~~~~~L~~L~l~~~~--~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1015 (1108)
.. ...+++|+.|+++.|. +.+..+..++ .+++|+.|+|++|.+.+..++.....+++|++|++++|+
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 10 1124799999998765 4444444444 589999999999987664455555788999999999998
Q ss_pred CCCc--eeeCCCcccccceEeecccCCCC--CCcccCCCCCCCEEEEecC
Q 048834 1016 ELRE--WTIGKEAMPELRELEIRCCKKMK--KPIELEKLSSLKELTLTDM 1061 (1108)
Q Consensus 1016 ~l~~--lp~~~~~l~~L~~L~i~~c~~l~--lp~~l~~l~~L~~L~l~~c 1061 (1108)
+.. ++.....+++|+.|++++|.... +..-...++.|....+...
T Consensus 500 -l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 500 -FSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp -CBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred -CcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 442 34444578999999999999554 2223345677776666554
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=4.4e-15 Score=160.16 Aligned_cols=78 Identities=22% Similarity=0.177 Sum_probs=36.1
Q ss_pred eEEEEeCCCCCCCCch-hhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCC-hhhccccccCEEEecc
Q 048834 763 LRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLP-KSIWKVKTLRHLYMND 839 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~ 839 (1108)
|++|++++|.+..++. .+..+++|++|++++|.+..+|. .+.++++|++|++++|.++.+| ..+.++++|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 4455555544444433 34444555555555544444432 3444445555555554444333 2344444444444444
Q ss_pred c
Q 048834 840 I 840 (1108)
Q Consensus 840 ~ 840 (1108)
|
T Consensus 110 n 110 (276)
T 2z62_A 110 T 110 (276)
T ss_dssp S
T ss_pred C
Confidence 3
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=4.2e-15 Score=160.35 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=111.1
Q ss_pred EEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEeccccc
Q 048834 765 VLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 765 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 842 (1108)
+.+..+..+..+|..+. .+|++|++++|.+..+|. .+.++++|++|++++|.++.+|. .+.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 34555566777777554 578888888888887765 67888888888888888886665 578888888888888876
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
.... +..+..+++|+.|++..+.........+..+++|+.|+++++......+|..+..+++|+.|++++|....
T Consensus 89 ~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 89 QSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CEEC--TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CccC--hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 5432 34477888888888877765544444577888888888887765422367778888888888888876544
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=4.7e-15 Score=162.12 Aligned_cols=121 Identities=17% Similarity=0.156 Sum_probs=89.7
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 840 (1108)
++|++|++++|.+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 34999999999988887 68889999999999999998888 899999999999999888876 6889999999999988
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeec
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCH 890 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 890 (1108)
.+... + .+..+++|+.|++..+..... + .+..+++|+.|+++.+
T Consensus 118 ~l~~~---~-~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 118 QITDV---T-PLAGLSNLQVLYLDLNQITNI-S-PLAGLTNLQYLSIGNA 161 (308)
T ss_dssp CCCCC---G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECCSS
T ss_pred CCCCc---h-hhcCCCCCCEEECCCCccCcC-c-cccCCCCccEEEccCC
Confidence 76532 1 156666666666655533221 1 1444455555555444
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.57 E-value=9.2e-17 Score=182.75 Aligned_cols=241 Identities=19% Similarity=0.108 Sum_probs=139.4
Q ss_pred CCCeeEEEEeCCCCCCC-----CchhhcCCCCccEEecCCcccc----cccccc-------CCCCCCcEEeccCCcCcc-
Q 048834 759 GYRLLRVLDLEGVYKPV-----LPETVGKLQLLRYFGLRWTFLD----SIPESV-------GDLPCLETLDLKHTNITS- 821 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~i~----~lp~~i-------~~l~~L~~L~L~~~~l~~- 821 (1108)
.+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 35557777777776553 2334556777777777765433 233333 566777777777776654
Q ss_pred ----CChhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccC---------cCCceeeee
Q 048834 822 ----LPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESL---------RGLKKLGLT 888 (1108)
Q Consensus 822 ----lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l---------~~L~~L~l~ 888 (1108)
+|..+.++++|++|++++|.+..... ..+ ...+..+ ++|+.|+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~--~~l--------------------~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAG--AKI--------------------ARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHH--HHH--------------------HHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHH--HHH--------------------HHHHHHHhhhhhcccCCCCcEEECC
Confidence 56666677777777777665432110 001 1112222 677777777
Q ss_pred ecccchhhHH---HHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEec
Q 048834 889 CHIASLGQIA---KWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLS 965 (1108)
Q Consensus 889 ~~~~~~~~lp---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~ 965 (1108)
++......+| ..+..+++|+.|.+++|........... |. ....+++|+.|+|++|
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~------------------~~---~l~~~~~L~~L~Ls~n 226 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLL------------------LE---GLAYCQELKVLDLQDN 226 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHH------------------HT---TGGGCTTCCEEECCSS
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHH------------------HH---HhhcCCCccEEECcCC
Confidence 6655433444 4666777888888877643310000000 00 0011257777777777
Q ss_pred cCC----CCCccccccccccceeeeccccccCce---eeeCC--CCCCcccEEEeccCCCCC----ceeeCC-Ccccccc
Q 048834 966 YLS----EDPMPVLGQLKELNILRLFAHSFMGEE---MTCGD--GGFPKLRVLKLWVQKELR----EWTIGK-EAMPELR 1031 (1108)
Q Consensus 966 ~~~----~~~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~l~----~lp~~~-~~l~~L~ 1031 (1108)
.+. ..+|..+..+++|+.|+|++|.+.... ++..+ +.+++|++|++++|..-. .+|..+ .++++|+
T Consensus 227 ~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 664 345666777888888888888765421 11222 447788888888776333 266555 4578888
Q ss_pred eEeecccCCCC
Q 048834 1032 ELEIRCCKKMK 1042 (1108)
Q Consensus 1032 ~L~i~~c~~l~ 1042 (1108)
.|++++|+...
T Consensus 307 ~L~l~~N~l~~ 317 (386)
T 2ca6_A 307 FLELNGNRFSE 317 (386)
T ss_dssp EEECTTSBSCT
T ss_pred EEEccCCcCCc
Confidence 88888887665
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.3e-14 Score=155.76 Aligned_cols=197 Identities=23% Similarity=0.206 Sum_probs=115.9
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChhh-ccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKSI-WKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~l~~~ 840 (1108)
+++++++++.+..+|..+. .+|++|+++++.+..+|. .+.++++|++|++++|.++.+|..+ .++++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 6778888888888887654 578888888888887765 6778888888888888888777764 67888888888877
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGE 920 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~ 920 (1108)
.+.... +..+..+++|+.|++..+......+..+ ..+++|+.|++++|.....
T Consensus 96 ~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 96 KLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRVF-------------------------DSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CCCCCC--TTTTTTCSSCCEEECCSSCCCCCCTTTT-------------------------TTCTTCCEEECCSSCCCCC
T ss_pred cCCcCC--HhHcccccCCCEEECCCCccCeeCHHHh-------------------------CcCcCCCEEECCCCcCCcc
Confidence 654221 2224445555555544443322222223 3445555555555433321
Q ss_pred CCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCC
Q 048834 921 PSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGD 1000 (1108)
Q Consensus 921 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 1000 (1108)
+.. .+. .+++|+.|++++|.+....+..+..+++|+.|+|++|.+.. ..+..+
T Consensus 149 ~~~----~~~----------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~ 201 (270)
T 2o6q_A 149 PKG----VFD----------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAF 201 (270)
T ss_dssp CTT----TTT----------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTT
T ss_pred CHh----Hcc----------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHh
Confidence 111 001 11355555555555544333445556666666666665543 122234
Q ss_pred CCCCcccEEEeccCC
Q 048834 1001 GGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 1001 ~~~~~L~~L~l~~~~ 1015 (1108)
..+++|+.|++++++
T Consensus 202 ~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEecCCC
Confidence 556666666666554
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=2.5e-16 Score=191.01 Aligned_cols=302 Identities=16% Similarity=0.107 Sum_probs=166.6
Q ss_pred CCeeEEEEeCCCCCCC-----CchhhcCCCCccEEecCCcc--cc--ccccccCCCCCCcEEeccCC-cCccCChhhccc
Q 048834 760 YRLLRVLDLEGVYKPV-----LPETVGKLQLLRYFGLRWTF--LD--SIPESVGDLPCLETLDLKHT-NITSLPKSIWKV 829 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~L~~~-~l~~lp~~i~~l 829 (1108)
+++|++|+|++|.+.. ++.....+++|++|++++|. +. .++.-+.++++|++|++++| .+..+|..+.++
T Consensus 155 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 234 (594)
T 2p1m_B 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234 (594)
T ss_dssp CTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHC
T ss_pred CCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcC
Confidence 5567777777775433 22233356677777777664 21 22333345677777777777 555666666677
Q ss_pred cccCEEEeccccc----------------------------cccccCCccccCcccccccccccccCCCC-ChhhhccCc
Q 048834 830 KTLRHLYMNDIYL----------------------------QMSVQKPFVKYSLTNLQTLWSLLIGNKSP-PLNWLESLR 880 (1108)
Q Consensus 830 ~~L~~L~l~~~~~----------------------------~~~~~~~~~l~~l~~L~~L~~~~~~~~~~-~~~~l~~l~ 880 (1108)
++|++|++..+.. ......+..+..+++|+.|++..+..... +...+..++
T Consensus 235 ~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~ 314 (594)
T 2p1m_B 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314 (594)
T ss_dssp TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence 7777776544311 00001112223456667776666552211 222345667
Q ss_pred CCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCC-----CCCCccccCCC-CCccCccceEeecccCCCC---CCC
Q 048834 881 GLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDF-----GEPSDLVIGPL-NNHRALNELYLLGKLPEPL---KLD 951 (1108)
Q Consensus 881 ~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~---~~~ 951 (1108)
+|+.|++.++ .....++.....+++|+.|++.+|... .......+..+ ..+++|+.|.+...--... .+.
T Consensus 315 ~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 315 KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA 393 (594)
T ss_dssp TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH
T ss_pred CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH
Confidence 7777777766 322344444455777887777553210 11111111111 1256777775543211100 011
Q ss_pred CCCCCcceEEEE-----eccCCCCCc------cccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCce
Q 048834 952 KLPPNLRILTLS-----LSYLSEDPM------PVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREW 1020 (1108)
Q Consensus 952 ~~~~~L~~L~l~-----~~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l 1020 (1108)
..+++|+.|+++ +|......| ..+..+++|+.|+|++ .+....+......+++|+.|++++|......
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~ 472 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLG 472 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHH
Confidence 123688888888 232222221 1245678888888866 3333212111123788999999988732222
Q ss_pred eeCC-CcccccceEeecccCCCC--CCcccCCCCCCCEEEEecCch
Q 048834 1021 TIGK-EAMPELRELEIRCCKKMK--KPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1021 p~~~-~~l~~L~~L~i~~c~~l~--lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
+..+ ..+++|+.|++++|+... +...+..+++|+.|++++|+.
T Consensus 473 ~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 473 MHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 2222 458999999999999844 333456689999999999986
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1e-15 Score=170.75 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=128.5
Q ss_pred ccCCCeeEEEEeCCCCCCC--CchhhcCCCCccEEecCCcccc-ccccccCCCCCCcEEeccCC-cCc--cCChhhcccc
Q 048834 757 RRGYRLLRVLDLEGVYKPV--LPETVGKLQLLRYFGLRWTFLD-SIPESVGDLPCLETLDLKHT-NIT--SLPKSIWKVK 830 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~L~~~-~l~--~lp~~i~~l~ 830 (1108)
...+++|++|++++|.+.. +|..+..+++|++|++++|.+. ..|..++++++|++|++++| .++ .+|..+.+++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~ 168 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence 3467889999999998764 7888999999999999999877 67888999999999999999 787 4777789999
Q ss_pred ccCEEEeccc-cccccccCCccccCcccccccccccccCCCCChhhhccCc-CCceeeeeecc--cchhhHHHHHhhcCC
Q 048834 831 TLRHLYMNDI-YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLR-GLKKLGLTCHI--ASLGQIAKWIQDLIS 906 (1108)
Q Consensus 831 ~L~~L~l~~~-~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~--~~~~~lp~~l~~l~~ 906 (1108)
+|++|++++| ...... ++..+..++ +|+.|+++++. .....+|..+..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~-------------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKH-------------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp TCCEEECCCCTTCCHHH-------------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred CCCEEcCCCCCCcChHH-------------------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 9999999988 443210 123345566 77777777663 333567777888888
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEecc-CCCCCccccccccccceee
Q 048834 907 LESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSY-LSEDPMPVLGQLKELNILR 985 (1108)
Q Consensus 907 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 985 (1108)
|+.|++++|...+... ...+..+ ++|+.|++++|. +.......++.+++|+.|+
T Consensus 224 L~~L~l~~~~~l~~~~---~~~l~~l----------------------~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDC---FQEFFQL----------------------NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 278 (336)
T ss_dssp CSEEECTTCTTCCGGG---GGGGGGC----------------------TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCEEeCCCCCcCCHHH---HHHHhCC----------------------CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence 8888888876432211 1112222 356666666553 2222222455677777777
Q ss_pred eccc
Q 048834 986 LFAH 989 (1108)
Q Consensus 986 L~~~ 989 (1108)
+++|
T Consensus 279 l~~~ 282 (336)
T 2ast_B 279 VFGI 282 (336)
T ss_dssp CTTS
T ss_pred ccCc
Confidence 7766
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=4.5e-15 Score=159.39 Aligned_cols=206 Identities=20% Similarity=0.169 Sum_probs=127.7
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEecc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMND 839 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 839 (1108)
++|+.|+++++.+..++ .+..+++|++|++++|.+..+| .+.++++|++|++++|.++.+|.. ++++++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 34777888877776664 4677778888888877777664 577777888888888777766654 57777888888877
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
|.+.... +..++.+++|+.|++..+......+..+..+++|+.|+++++... ...+..+..+++|+.|++++|....
T Consensus 119 n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 119 NQLQSLP--DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp SCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CcCCccC--HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCc
Confidence 7654322 233566777777777666544333444566777777777766543 2222334566777777777765443
Q ss_pred CCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeC
Q 048834 920 EPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCG 999 (1108)
Q Consensus 920 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 999 (1108)
.++. .+..+ ++|+.|++++|.+. +.+|+|+.|.+..|.+.+. ++..
T Consensus 196 ~~~~----~~~~l----------------------~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~-ip~~ 241 (272)
T 3rfs_A 196 VPDG----VFDRL----------------------TSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV-VRNS 241 (272)
T ss_dssp CCTT----TTTTC----------------------TTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGG-BBCT
T ss_pred cCHH----HHhCC----------------------cCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCc-ccCc
Confidence 2221 11222 46666666666543 2455666777666666553 4444
Q ss_pred CCCCCc
Q 048834 1000 DGGFPK 1005 (1108)
Q Consensus 1000 ~~~~~~ 1005 (1108)
++.++.
T Consensus 242 ~~~~~~ 247 (272)
T 3rfs_A 242 AGSVAP 247 (272)
T ss_dssp TSCBCG
T ss_pred ccccCC
Confidence 444443
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=2.6e-16 Score=190.87 Aligned_cols=295 Identities=14% Similarity=0.091 Sum_probs=183.0
Q ss_pred CCeeEEEEeCCC-CCCC--CchhhcCCCCccEEecCCccccc-----cccccCCCCCCcEEeccCCc--Cc--cCChhhc
Q 048834 760 YRLLRVLDLEGV-YKPV--LPETVGKLQLLRYFGLRWTFLDS-----IPESVGDLPCLETLDLKHTN--IT--SLPKSIW 827 (1108)
Q Consensus 760 l~~Lr~L~L~~~-~~~~--lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~--l~--~lp~~i~ 827 (1108)
+++|++|+|++| .+.. ++..+.++++|++|++++|.+.. ++.....+++|++|++++|. +. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 667999999998 4544 55566689999999999987543 44444578899999999985 32 3333346
Q ss_pred cccccCEEEeccccccccccCCccccCcccccccccccccC------------------------------CCCChhhhc
Q 048834 828 KVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGN------------------------------KSPPLNWLE 877 (1108)
Q Consensus 828 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~------------------------------~~~~~~~l~ 877 (1108)
++++|++|++++|..... .+..+.++++|+.|++..+.. ...++..+.
T Consensus 209 ~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~ 286 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEK--LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS 286 (594)
T ss_dssp HCTTCCEEECCTTSCHHH--HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH
T ss_pred hCCCCcEEecCCCCcHHH--HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH
Confidence 679999999998843322 344455666777665432211 112233334
Q ss_pred cCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCC-CCCccCccceEeecccCC------CCC-
Q 048834 878 SLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGP-LNNHRALNELYLLGKLPE------PLK- 949 (1108)
Q Consensus 878 ~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~~l~l~~~~~~------~~~- 949 (1108)
.+++|+.|+++++......++..+..+++|++|.+.+|.. ...+.. ...+++|+.|++.++-|. .+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-----~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE-----DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-----HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC-----HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 5678888888877654344555566778888888887611 111111 123677888888553211 000
Q ss_pred -----CCCCCCCcceEEEEeccCCCCCccccc-cccccceeeec--c---c-cccC----ceeeeCCCCCCcccEEEecc
Q 048834 950 -----LDKLPPNLRILTLSLSYLSEDPMPVLG-QLKELNILRLF--A---H-SFMG----EEMTCGDGGFPKLRVLKLWV 1013 (1108)
Q Consensus 950 -----~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~--~---~-~~~~----~~~~~~~~~~~~L~~L~l~~ 1013 (1108)
+...+++|+.|.+..+.+.+..+..+. .+++|+.|+|+ + | .+.. ..+......+++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 001146888887766666554444443 58888888888 2 2 2321 01111234678888888866
Q ss_pred CCCCCce-eeCCC-cccccceEeecccCCCC-CCccc-CCCCCCCEEEEecCch
Q 048834 1014 QKELREW-TIGKE-AMPELRELEIRCCKKMK-KPIEL-EKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1014 ~~~l~~l-p~~~~-~l~~L~~L~i~~c~~l~-lp~~l-~~l~~L~~L~l~~c~~ 1063 (1108)
.+... +..+. .+++|+.|++++|.... .+..+ ..+++|+.|++++|+.
T Consensus 442 --~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 442 --LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp --SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred --cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 23321 11222 37889999999998644 22222 5689999999999985
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=9.8e-15 Score=156.73 Aligned_cols=225 Identities=20% Similarity=0.118 Sum_probs=133.6
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
+..+++.++.+... .....+.+|+.|+++++.+..++ .+..+++|++|++++|.++.++ .++++++|++|++++|.+
T Consensus 21 l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 21 TIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCC
T ss_pred HHHHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCcc
Confidence 44455555555444 34567889999999999888876 4888999999999999888875 788999999999999876
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPS 922 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 922 (1108)
.... +..++.+++|+.|++..+......+..+.. +++|+.|++++|.....++
T Consensus 98 ~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------------------------l~~L~~L~L~~n~l~~~~~ 150 (272)
T 3rfs_A 98 QSLP--NGVFDKLTNLKELVLVENQLQSLPDGVFDK-------------------------LTNLTYLNLAHNQLQSLPK 150 (272)
T ss_dssp CCCC--TTTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------------------CTTCCEEECCSSCCCCCCT
T ss_pred CccC--hhHhcCCcCCCEEECCCCcCCccCHHHhcc-------------------------CCCCCEEECCCCccCccCH
Confidence 5322 233556666666666555443333333344 4455555555443322111
Q ss_pred ccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCC
Q 048834 923 DLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGG 1002 (1108)
Q Consensus 923 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 1002 (1108)
.. + ..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+. .+..++.
T Consensus 151 ~~----~----------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~ 203 (272)
T 3rfs_A 151 GV----F----------------------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-PDGVFDR 203 (272)
T ss_dssp TT----T----------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTT
T ss_pred HH----h----------------------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-CHHHHhC
Confidence 00 0 0113555555555555544444455566666666666655441 2233455
Q ss_pred CCcccEEEeccCCCCCceeeCCCcccccceEeecccCCCC-CCcccCCCC
Q 048834 1003 FPKLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMK-KPIELEKLS 1051 (1108)
Q Consensus 1003 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~-lp~~l~~l~ 1051 (1108)
+++|+.|++++|+.. +.+++|+.|.++.|.... +|..++.++
T Consensus 204 l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 204 LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred CcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence 666666666665421 235566666666665554 555554443
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=2.5e-14 Score=154.66 Aligned_cols=128 Identities=20% Similarity=0.153 Sum_probs=89.6
Q ss_pred ccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChhhccccccCEE
Q 048834 757 RRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHL 835 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L 835 (1108)
+.++++|+.++++++.+..+|..+. .+|++|++++|.+..+ |..+..+++|++|+|++|.++.+|.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 3456678899999988888887664 6888999999888876 45688899999999999988877764 788889999
Q ss_pred EeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeec
Q 048834 836 YMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCH 890 (1108)
Q Consensus 836 ~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 890 (1108)
++++|.+. ..+..+..+++|+.|++..+......+..+..+++|+.|+++++
T Consensus 83 ~Ls~N~l~---~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N 134 (290)
T 1p9a_G 83 DLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134 (290)
T ss_dssp ECCSSCCS---SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS
T ss_pred ECCCCcCC---cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC
Confidence 98888664 22344556666666666555443333334444555555555443
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=1.8e-16 Score=180.23 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=178.1
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccc-----cccccCCCCCCcEEeccCCcCc----cCChhh-------
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDS-----IPESVGDLPCLETLDLKHTNIT----SLPKSI------- 826 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~l~----~lp~~i------- 826 (1108)
|++..++...+..++..+..+++|++|+|++|.+.. ++..+.++++|++|+|++|.+. .+|.++
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 555555555566778888888999999999987763 4556778899999999887444 345554
Q ss_pred ccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccc---hhhHHHHHhh
Q 048834 827 WKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIAS---LGQIAKWIQD 903 (1108)
Q Consensus 827 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~lp~~l~~ 903 (1108)
.++++|++|++++|.+..... ..++..+..+++|+.|++++|... ...++..+..
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~----------------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 148 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQ----------------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQE 148 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTH----------------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHH----------------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHH
Confidence 567777888777765432110 023456677788888888877653 1244555555
Q ss_pred c---------CCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCC----
Q 048834 904 L---------ISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSED---- 970 (1108)
Q Consensus 904 l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---- 970 (1108)
+ ++|++|.+++|.............+ ..+++|++|++++|.+...
T Consensus 149 l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l----------------------~~~~~L~~L~L~~n~l~~~g~~~ 206 (386)
T 2ca6_A 149 LAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF----------------------QSHRLLHTVKMVQNGIRPEGIEH 206 (386)
T ss_dssp HHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH----------------------HHCTTCCEEECCSSCCCHHHHHH
T ss_pred HhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH----------------------HhCCCcCEEECcCCCCCHhHHHH
Confidence 5 8999999988765421111000000 0125888999988877532
Q ss_pred -CccccccccccceeeeccccccC---ceeeeCCCCCCcccEEEeccCCCCCc----eeeCC--CcccccceEeecccCC
Q 048834 971 -PMPVLGQLKELNILRLFAHSFMG---EEMTCGDGGFPKLRVLKLWVQKELRE----WTIGK--EAMPELRELEIRCCKK 1040 (1108)
Q Consensus 971 -~~~~~~~l~~L~~L~L~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~----lp~~~--~~l~~L~~L~i~~c~~ 1040 (1108)
.+..+..+++|+.|+|++|.+.. ..++..+..+++|++|++++|..-.. +|..+ +.+++|+.|++++|..
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 23367889999999999998752 12455667899999999999983332 34444 3489999999999998
Q ss_pred CC-----CCccc-CCCCCCCEEEEecCch
Q 048834 1041 MK-----KPIEL-EKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1041 l~-----lp~~l-~~l~~L~~L~l~~c~~ 1063 (1108)
.. +|..+ .++++|+.|++++|+-
T Consensus 287 ~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp BHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 77 77777 6689999999999884
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=3e-14 Score=159.18 Aligned_cols=234 Identities=16% Similarity=0.100 Sum_probs=126.3
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCc-cCChh-hccccccCEEEecc-
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNIT-SLPKS-IWKVKTLRHLYMND- 839 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~-~lp~~-i~~l~~L~~L~l~~- 839 (1108)
++++.+++.++++|..+ ..+|++|+|++|.++.+|. .+.+|++|++|+|++|.+. .+|.. +.++++|+++...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56777777888888766 3678888888888888886 4788888888888888754 56654 56777777654433
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
+... ..+ +..+..+++|+.|++..+..............+ +..|.+.++....
T Consensus 90 N~l~-~l~-~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-------------------------l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 90 NNLL-YIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-------------------------KVLLDIQDNINIH 142 (350)
T ss_dssp TTCC-EEC-TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS-------------------------CEEEEEESCTTCC
T ss_pred Cccc-ccC-chhhhhccccccccccccccccCCchhhcccch-------------------------hhhhhhccccccc
Confidence 3332 221 233555666666655554333222222222223 3333333322222
Q ss_pred CCCccccCCCCCc-cCccceEeecc----cCCCCCCCCCCCCcceEEEEeccCCCCCcc-ccccccccceeeeccccccC
Q 048834 920 EPSDLVIGPLNNH-RALNELYLLGK----LPEPLKLDKLPPNLRILTLSLSYLSEDPMP-VLGQLKELNILRLFAHSFMG 993 (1108)
Q Consensus 920 ~~~~~~~~~~~~l-~~L~~l~l~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~ 993 (1108)
..+.. .+..+ ..++.|.+++. +|.... . ..+|+.|.+.++.....+|. .++.+++|+.|+|++|.+..
T Consensus 143 ~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~~~f--~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 143 TIERN---SFVGLSFESVILWLNKNGIQEIHNSAF--N-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp EECTT---SSTTSBSSCEEEECCSSCCCEECTTSS--T-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred ccccc---chhhcchhhhhhccccccccCCChhhc--c-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 11110 00111 12223333222 111111 0 13566666665444444443 35667777777777766644
Q ss_pred ceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeecc
Q 048834 994 EEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIRC 1037 (1108)
Q Consensus 994 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~ 1037 (1108)
++ .+.|.+|+.|.+.++..++.+|. +..+++|+.+++.+
T Consensus 217 --lp--~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 --LP--SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp --CC--SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred --cC--hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 33 23466666666666666666663 55666777776654
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=2.4e-14 Score=150.62 Aligned_cols=204 Identities=19% Similarity=0.203 Sum_probs=124.2
Q ss_pred CCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCc-CccCCh-hhccccccCEEEecc-ccccccccC
Q 048834 773 KPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTN-ITSLPK-SIWKVKTLRHLYMND-IYLQMSVQK 848 (1108)
Q Consensus 773 ~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~l~~-~~~~~~~~~ 848 (1108)
+..+|. +. .+|++|+++++.+..+|. .+..+++|++|++++|. ++.+|. .+.++++|++|++++ +.+.. .
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~-i-- 96 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY-I-- 96 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE-E--
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE-c--
Confidence 556665 33 367777777777776665 56667777777777774 666655 456667777777665 33221 1
Q ss_pred CccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCC
Q 048834 849 PFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGP 928 (1108)
Q Consensus 849 ~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 928 (1108)
.+..+..+++ |+.|.+++|.....+ .
T Consensus 97 -----------------------~~~~f~~l~~-------------------------L~~L~l~~n~l~~lp-~----- 122 (239)
T 2xwt_C 97 -----------------------DPDALKELPL-------------------------LKFLGIFNTGLKMFP-D----- 122 (239)
T ss_dssp -----------------------CTTSEECCTT-------------------------CCEEEEEEECCCSCC-C-----
T ss_pred -----------------------CHHHhCCCCC-------------------------CCEEeCCCCCCcccc-c-----
Confidence 0112223334 444444443322211 0
Q ss_pred CCCccCccceEeecccCCCCCCCCCCCCcc---eEEEEec-cCCCCCccccccccccc-eeeeccccccCceeeeCCCCC
Q 048834 929 LNNHRALNELYLLGKLPEPLKLDKLPPNLR---ILTLSLS-YLSEDPMPVLGQLKELN-ILRLFAHSFMGEEMTCGDGGF 1003 (1108)
Q Consensus 929 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~~~~~ 1003 (1108)
+.. +++|+ .|++++| .+....+..+..+++|+ .|++++|.+.. ++......
T Consensus 123 ~~~----------------------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~ 178 (239)
T 2xwt_C 123 LTK----------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNG 178 (239)
T ss_dssp CTT----------------------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTT
T ss_pred ccc----------------------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCC
Confidence 000 02333 7777776 55543444567788888 88888887753 44433344
Q ss_pred CcccEEEeccCCCCCceee-CCCcc-cccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 1004 PKLRVLKLWVQKELREWTI-GKEAM-PELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1004 ~~L~~L~l~~~~~l~~lp~-~~~~l-~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
++|+.|++++|+.+..+|. .+..+ ++|+.|++++|....+|.. .+++|+.|.+.+|.
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 7888888888876777764 45677 8889999988887777655 57888888888775
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=1e-13 Score=148.64 Aligned_cols=202 Identities=24% Similarity=0.283 Sum_probs=144.2
Q ss_pred CCccEEecCCccccccccccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEeccccccccccCCccccCcccccccc
Q 048834 784 QLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLW 862 (1108)
Q Consensus 784 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 862 (1108)
.++++++++++.+..+|..+. .+|++|++++|.++.+|. .++++++|++|++++|.+... + +..+..+++|+.|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~-~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-P-AGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-C-TTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-C-hhhhcCCCCCCEEE
Confidence 357899999999999998765 689999999999998876 588999999999998865421 1 12234455555554
Q ss_pred cccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeec
Q 048834 863 SLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLG 942 (1108)
Q Consensus 863 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~ 942 (1108)
+..+...... +..+..+++|++|.+++|.....++..
T Consensus 92 l~~n~l~~~~-------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~------------------ 128 (270)
T 2o6q_A 92 VTDNKLQALP-------------------------IGVFDQLVNLAELRLDRNQLKSLPPRV------------------ 128 (270)
T ss_dssp CCSSCCCCCC-------------------------TTTTTTCSSCCEEECCSSCCCCCCTTT------------------
T ss_pred CCCCcCCcCC-------------------------HhHcccccCCCEEECCCCccCeeCHHH------------------
Confidence 4443222111 122345667777777766544322110
Q ss_pred ccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee
Q 048834 943 KLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI 1022 (1108)
Q Consensus 943 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~ 1022 (1108)
...+++|++|++++|.+....+..++.+++|+.|+|++|.+... .+..+..+++|++|++++|. +..+|.
T Consensus 129 --------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~ 198 (270)
T 2o6q_A 129 --------FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQ-LKRVPE 198 (270)
T ss_dssp --------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred --------hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-ChhHhccCCCcCEEECCCCc-CCcCCH
Confidence 11226899999999988765555688999999999999988762 33446789999999999996 666765
Q ss_pred C-CCcccccceEeecccCCCC
Q 048834 1023 G-KEAMPELRELEIRCCKKMK 1042 (1108)
Q Consensus 1023 ~-~~~l~~L~~L~i~~c~~l~ 1042 (1108)
. +..+++|+.|++++|+...
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHhccccCCCEEEecCCCeeC
Confidence 4 6789999999999998643
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=2.7e-14 Score=150.16 Aligned_cols=82 Identities=15% Similarity=0.210 Sum_probs=73.4
Q ss_pred eeEEEEeCCCCCCCCch-hhcCCCCccEEecCCcc-cccccc-ccCCCCCCcEEeccC-CcCccCCh-hhccccccCEEE
Q 048834 762 LLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTF-LDSIPE-SVGDLPCLETLDLKH-TNITSLPK-SIWKVKTLRHLY 836 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~L~L~~-~~l~~lp~-~i~~l~~L~~L~ 836 (1108)
+|++|+++++.+..+|+ .+..+++|++|++++|. +..+|. .+.++++|++|++++ +.++.+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 59999999999999876 78999999999999996 998876 688999999999998 79998875 578999999999
Q ss_pred ecccccc
Q 048834 837 MNDIYLQ 843 (1108)
Q Consensus 837 l~~~~~~ 843 (1108)
+++|.+.
T Consensus 112 l~~n~l~ 118 (239)
T 2xwt_C 112 IFNTGLK 118 (239)
T ss_dssp EEEECCC
T ss_pred CCCCCCc
Confidence 9988654
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=1.5e-13 Score=148.61 Aligned_cols=201 Identities=17% Similarity=0.034 Sum_probs=124.4
Q ss_pred hcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCC-hhhccccccCEEEeccccccccccCCccccCcccc
Q 048834 780 VGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLP-KSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNL 858 (1108)
Q Consensus 780 i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 858 (1108)
++++.+|++++++++.+..+|..+. .+|++|+|++|.++.++ ..+..+++|++|++++|.+..... .+.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----CCCCCcC
Confidence 6788899999999999999998775 78999999999998664 568999999999999987653221 2445555
Q ss_pred cccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccce
Q 048834 859 QTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNEL 938 (1108)
Q Consensus 859 ~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l 938 (1108)
+.|++..+... .+|..+..+++|+.|.+++|.....++. .+..
T Consensus 80 ~~L~Ls~N~l~--------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~----~~~~------- 122 (290)
T 1p9a_G 80 GTLDLSHNQLQ--------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLG----ALRG------- 122 (290)
T ss_dssp CEEECCSSCCS--------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSS----TTTT-------
T ss_pred CEEECCCCcCC--------------------------cCchhhccCCCCCEEECCCCcCcccCHH----HHcC-------
Confidence 55555444222 3333344555666666655544332211 0111
Q ss_pred EeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCC
Q 048834 939 YLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELR 1018 (1108)
Q Consensus 939 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 1018 (1108)
+++|+.|++++|.+....+..+..+++|+.|+|++|.+.. ..+..+..+++|+.|+++++. +.
T Consensus 123 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~-l~ 185 (290)
T 1p9a_G 123 ---------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENS-LY 185 (290)
T ss_dssp ---------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEECCSSC-CC
T ss_pred ---------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCCEEECCCCc-CC
Confidence 1355556665555554334445566666666666666543 122223456666666666664 55
Q ss_pred ceeeCCCcccccceEeecccCC
Q 048834 1019 EWTIGKEAMPELRELEIRCCKK 1040 (1108)
Q Consensus 1019 ~lp~~~~~l~~L~~L~i~~c~~ 1040 (1108)
.+|..+..+++|+.|.+.+|+.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCB
T ss_pred ccChhhcccccCCeEEeCCCCc
Confidence 6666666666666666666554
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=1e-14 Score=163.90 Aligned_cols=133 Identities=12% Similarity=0.065 Sum_probs=62.1
Q ss_pred eEEEEeCCCCCCCCc-----hhhcCCC-CccEEecCCcccccc-ccccCCC-----CCCcEEeccCCcCccCCh-h----
Q 048834 763 LRVLDLEGVYKPVLP-----ETVGKLQ-LLRYFGLRWTFLDSI-PESVGDL-----PCLETLDLKHTNITSLPK-S---- 825 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp-----~~i~~l~-~L~~L~l~~~~i~~l-p~~i~~l-----~~L~~L~L~~~~l~~lp~-~---- 825 (1108)
|++|+|++|.+...+ ..+..++ +|++|++++|.+... +..+..+ ++|++|+|++|.++..+. .
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 555555555555443 3444555 555555555554433 2233332 555555555555543222 1
Q ss_pred hccc-cccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhcc-CcCCceeeeeecccc---hhhHHHH
Q 048834 826 IWKV-KTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLES-LRGLKKLGLTCHIAS---LGQIAKW 900 (1108)
Q Consensus 826 i~~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~---~~~lp~~ 900 (1108)
+..+ ++|++|++++|.+.... +..+ ...+.. .++|+.|+++++... ...++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~--~~~l--------------------~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKS--SSEF--------------------KQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSC--HHHH--------------------HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred HHhCCCCccEEECcCCcCCcHH--HHHH--------------------HHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 2222 45555555555443211 0000 111222 246666666655332 1345555
Q ss_pred HhhcC-CCcEEEEEecCC
Q 048834 901 IQDLI-SLESLRLRSLND 917 (1108)
Q Consensus 901 l~~l~-~L~~L~l~~~~~ 917 (1108)
+..++ +|++|++++|..
T Consensus 162 l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHTSCTTCCEEECTTSCG
T ss_pred HhcCCccccEeeecCCCC
Confidence 55554 666776666543
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=150.55 Aligned_cols=203 Identities=16% Similarity=0.080 Sum_probs=124.5
Q ss_pred CCeeEEEEeCCCCCC-CCchhh--cCCCCccEEecCCcccccc-c----cccCCCCCCcEEeccCCcCccCC-hhhcccc
Q 048834 760 YRLLRVLDLEGVYKP-VLPETV--GKLQLLRYFGLRWTFLDSI-P----ESVGDLPCLETLDLKHTNITSLP-KSIWKVK 830 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~-~lp~~i--~~l~~L~~L~l~~~~i~~l-p----~~i~~l~~L~~L~L~~~~l~~lp-~~i~~l~ 830 (1108)
+++|++|++++|.+. ..|..+ +.+.+|++|++++|.+... | ..+..+++|++|+|++|.+..+| ..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 345899999998866 446666 8889999999998877642 2 34457889999999999888655 4678889
Q ss_pred ccCEEEeccccccccc--cCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccc-hhhHHHH-HhhcCC
Q 048834 831 TLRHLYMNDIYLQMSV--QKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIAS-LGQIAKW-IQDLIS 906 (1108)
Q Consensus 831 ~L~~L~l~~~~~~~~~--~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~lp~~-l~~l~~ 906 (1108)
+|++|++++|...+.. +.... +..+++|++|+++++... +...+.+ +..+++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~------------------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~ 225 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALC------------------------PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ 225 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSC------------------------TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC
T ss_pred CCCEEECCCCCCccchhhhHHHh------------------------hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC
Confidence 9999999888654321 11111 234455555666555432 1222333 467788
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeee
Q 048834 907 LESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRL 986 (1108)
Q Consensus 907 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 986 (1108)
|++|++++|......+. .+.....+++|++|++++|.+. .+|..+ +++|+.|+|
T Consensus 226 L~~L~Ls~N~l~~~~p~-----------------------~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~L 279 (310)
T 4glp_A 226 PHSLDLSHNSLRATVNP-----------------------SAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVLDL 279 (310)
T ss_dssp CSSEECTTSCCCCCCCS-----------------------CCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCEEC
T ss_pred CCEEECCCCCCCccchh-----------------------hHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEEEC
Confidence 88888887765543111 1111111246666777666665 445444 256666777
Q ss_pred ccccccCceeeeCCCCCCcccEEEeccCC
Q 048834 987 FAHSFMGEEMTCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 1015 (1108)
++|.+.+ ++. ...+++|+.|++++++
T Consensus 280 s~N~l~~--~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 280 SSNRLNR--APQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCCCS--CCC-TTSCCCCSCEECSSTT
T ss_pred CCCcCCC--Cch-hhhCCCccEEECcCCC
Confidence 6666654 222 3455666666665554
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=2.1e-13 Score=149.09 Aligned_cols=151 Identities=22% Similarity=0.162 Sum_probs=125.5
Q ss_pred ccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEE
Q 048834 757 RRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLY 836 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 836 (1108)
+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+..+++|++|++++|.++.+|. +..+++|++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLY 135 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEE
Confidence 3456779999999999999988 999999999999999999887 68999999999999999998875 99999999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|.+.... . ++.+++|+.|++..+.... .+. +..+++|+.|+++++... .++. +..+++|+.|++++|.
T Consensus 136 l~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~--~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 136 LDLNQITNIS---P-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS--DISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCSSCCCCCG---G-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC--CCGG-GGGCTTCCEEECTTSC
T ss_pred CCCCccCcCc---c-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC--cChh-hcCCCCCCEEEccCCc
Confidence 9999775432 2 7889999999998875543 333 888899999999987653 3333 6788899999998876
Q ss_pred CCC
Q 048834 917 DFG 919 (1108)
Q Consensus 917 ~~~ 919 (1108)
...
T Consensus 207 l~~ 209 (308)
T 1h6u_A 207 ISD 209 (308)
T ss_dssp CCB
T ss_pred cCc
Confidence 543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.45 E-value=2.3e-13 Score=151.99 Aligned_cols=219 Identities=16% Similarity=0.008 Sum_probs=141.7
Q ss_pred CeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCccc-ccccc-ccCCCCCCcE-EeccCCcCccCCh-hhccccccCEE
Q 048834 761 RLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFL-DSIPE-SVGDLPCLET-LDLKHTNITSLPK-SIWKVKTLRHL 835 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i-~~lp~-~i~~l~~L~~-L~L~~~~l~~lp~-~i~~l~~L~~L 835 (1108)
+++++|+|++|.+..+|+ .+.+|.+|++|+|++|.+ +.+|. .+.++++|.+ +.+.+++++.+|+ .+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 459999999999999986 589999999999999976 45665 4678888876 4555678888755 57899999999
Q ss_pred EeccccccccccCCccccCcccccccccccccCCCCCh-hhhccC-cCCceeeeeecccchhhHHHHHhhcCCCcEEEEE
Q 048834 836 YMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPL-NWLESL-RGLKKLGLTCHIASLGQIAKWIQDLISLESLRLR 913 (1108)
Q Consensus 836 ~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~-~~l~~l-~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~ 913 (1108)
++++|.+.... +.......++..|.+..+.....++ ..+..+ ..|+.|+++++.. ..+|.......+|+.|.+.
T Consensus 110 ~l~~n~l~~~~--~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i--~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 110 LISNTGIKHLP--DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI--QEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp EEEEECCSSCC--CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC--CEECTTSSTTEEEEEEECT
T ss_pred cccccccccCC--chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc--cCCChhhccccchhHHhhc
Confidence 99998765432 2223344555566554443332222 123333 3566677766544 2444444444556666665
Q ss_pred ecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccC
Q 048834 914 SLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMG 993 (1108)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 993 (1108)
+++..+..+.. ....+++|+.|++++|.+. .+|. +.|.+|+.|.+.++....
T Consensus 186 ~~n~l~~i~~~-------------------------~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~ 237 (350)
T 4ay9_X 186 DNNNLEELPND-------------------------VFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK 237 (350)
T ss_dssp TCTTCCCCCTT-------------------------TTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCC
T ss_pred cCCcccCCCHH-------------------------HhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcC
Confidence 54443332211 1122368999999998876 4443 346667777666665544
Q ss_pred ceeeeCCCCCCcccEEEecc
Q 048834 994 EEMTCGDGGFPKLRVLKLWV 1013 (1108)
Q Consensus 994 ~~~~~~~~~~~~L~~L~l~~ 1013 (1108)
. +| .+..+++|+.+++.+
T Consensus 238 ~-lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 238 K-LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp C-CC-CTTTCCSCCEEECSC
T ss_pred c-CC-CchhCcChhhCcCCC
Confidence 3 44 477899999999853
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=4.5e-13 Score=144.95 Aligned_cols=145 Identities=18% Similarity=0.110 Sum_probs=109.4
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccc
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 840 (1108)
++|++|++++|.+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++|.++.+|. ++.+++|++|++++|
T Consensus 46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 338899999988888854 7888899999999988888877 8888999999999988887764 888899999999888
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLND 917 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 917 (1108)
.+... ..+..+++|+.|++..+..... ..+..+++|+.|+++++... .++. +..+++|+.|++++|..
T Consensus 123 ~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~--~~~~-l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 123 GISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP-LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp CCCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCC
T ss_pred cCCCC----hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc--cchh-hcCCCccCEEECCCCcC
Confidence 76532 2367778888887776654432 56777778888888776553 3333 66777777777777654
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=3.6e-13 Score=159.97 Aligned_cols=146 Identities=19% Similarity=0.112 Sum_probs=98.3
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|++|++++|.+..+| .+..|++|++|+|++|.+..+|. +..|++|++|+|++|.+..+| .++.+++|++|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 344888888888877776 47778888888888888777776 778888888888888777765 577888888888888
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLND 917 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~ 917 (1108)
|.+... ..+..+++|+.|++..+..... ..+..+++|+.|+|+.+... .++. +..+++|+.|+|++|..
T Consensus 119 N~l~~l----~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~--~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 119 NGISDI----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS--DIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp SCCCCC----GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCC
T ss_pred CCCCCC----ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC--Cchh-hccCCCCCEEECcCCCC
Confidence 765431 2366667777776666544322 45566666666666655442 2222 55566666666665543
No 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.40 E-value=1.4e-12 Score=155.64 Aligned_cols=269 Identities=19% Similarity=0.271 Sum_probs=210.2
Q ss_pred eeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCce-eEEEEeccCCCcCHHHHHHHHHHHHh
Q 048834 366 VGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY-HAWANVDVSHDFDLRKVFINILEQVT 444 (1108)
Q Consensus 366 ~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~-~~w~~v~~s~~~~~~~l~~~il~~l~ 444 (1108)
+||+..++++.+.+....+ ++++.|+|++|+||||||+.+|++.+++..|+. +.|++ ++..++...+...+...+.
T Consensus 131 VGRe~eLeeL~elL~~~d~-~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs--Vs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELRP-AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCCS-SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE--CCCSSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccCC-CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE--eCCCCCHHHHHHHHHHHHh
Confidence 7999999999999976432 679999999999999999999987778889986 89999 7888888787777776554
Q ss_pred hhh------h----hhhhhHHHHHHHHHHHh---cCCceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHH
Q 048834 445 RVK------I----AEELALNELESRLIRLF---QSKRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREAFVA 511 (1108)
Q Consensus 445 ~~~------~----~~~~~~~~l~~~l~~~l---~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~ 511 (1108)
... . ....+.+.+...+++.+ .++++|||+||+|+...|+.+ + +|++|++|||+..++
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~-----pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N-----LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H-----SSCCEEEECSCSHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C-----CCeEEEEeccChHHH
Confidence 321 0 11234556667777766 689999999999998888754 3 689999999999988
Q ss_pred HhcCCCcceEecC------CCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCCChhHHH
Q 048834 512 RAFSPSIILLQLR------PLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLLSTNRQIQNSDWE 585 (1108)
Q Consensus 512 ~~~~~~~~~~~~~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l~~~~~~~~~~w~ 585 (1108)
..+.. ...+.+. .|+.++++++|...++... .++..+ .|+|+|+|++.+|..++.+.. ...+|.
T Consensus 279 ~~l~g-~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-----eeL~~e---ICgGLPLALkLaGs~Lr~k~~-s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-----QDLPRE---VLTTNPRRLSIIAESIRDGLA-TWDNWK 348 (1221)
T ss_dssp HHHHH-HSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-----TTHHHH---HCCCCHHHHHHHHHHHHHSCS-SHHHHH
T ss_pred HhcCC-CeEEEecCccccCCcCHHHHHHHHHHHcCCCH-----HHHHHH---HhCCCHHHHHHHHHHHhCCCC-CHHHHh
Confidence 64432 2245566 8999999999988754321 122223 389999999999999998753 357774
Q ss_pred HHHhccCCCCCcchhhhhhhhhhcccccCCCCCCCCCCCCchhhhhHHhhccccchHhH-HHHHhhhccCCCCcccchHH
Q 048834 586 KVIEGFTPGGKKKEKQIQHVEQVASDKDQSGSRDELPPSDNLDASSIWGLGYKYLSAHL-KACLHYLCLFPKSHEIPVRR 664 (1108)
Q Consensus 586 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~l~~~l-~~~~~~~~~f~~~~~~~~~~ 664 (1108)
.. .. ..+..++..||+.||+.. +.||+++++||++..++...
T Consensus 349 ~~----~~---------------------------------~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~el 391 (1221)
T 1vt4_I 349 HV----NC---------------------------------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391 (1221)
T ss_dssp HC----SC---------------------------------HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHH
T ss_pred cC----Ch---------------------------------hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 32 00 178899999999999999 99999999999999999999
Q ss_pred HHHHHHhcCcccCCCCCCCCHHHHHHHHHHHHHHccchhhh
Q 048834 665 LLQLWLAERFVTPSEGEEMTPEDRARKDFEQLEQRNMIEVV 705 (1108)
Q Consensus 665 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 705 (1108)
++.+|.+++ .+.+..++.+|+++++++..
T Consensus 392 La~LW~aeG------------eedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 392 LSLIWFDVI------------KSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHHHHCSSC------------SHHHHHHHHHHHTSSSSSBC
T ss_pred HHHHhcCCC------------HHHHHHHHHHHHhhCCEEEe
Confidence 999998664 12367788999999988764
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=5.7e-13 Score=135.07 Aligned_cols=147 Identities=16% Similarity=0.126 Sum_probs=110.1
Q ss_pred eeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCcc-CChhhccccccCEEEeccc
Q 048834 762 LLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITS-LPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~l~~~ 840 (1108)
+|++|++++|.+..+| .+..+++|++|++++|.+..+| .+..+++|++|++++|.++. .|..++.+++|++|++++|
T Consensus 45 ~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 45 SLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp TCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 3899999999888888 6888999999999988776665 68889999999999998874 6777888999999999888
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
.+.... +..++.+++|+.|++..+.....++ .+..+++|+.|+++++... .++ .+..+++|+.|+++++.
T Consensus 123 ~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~--~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 123 AHDDSI--LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH--DYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp BCBGGG--HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC--CCT-TGGGCSSCCEEEECBC-
T ss_pred ccCcHh--HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc--ChH-HhccCCCCCEEEeeCcc
Confidence 765432 3446778888888777775333333 5777777777777766543 333 46667777777777655
No 102
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.37 E-value=3e-12 Score=151.43 Aligned_cols=163 Identities=18% Similarity=0.246 Sum_probs=135.7
Q ss_pred eeehHHHHHHHHHHhCC-CCceEEEEEEcCCCChHHHHHHHHhc--CccccccCceeEEEEeccCCCc--CHHHHHHHHH
Q 048834 366 VGLKDQLLRLAQLTMSS-SSKYFLISVVGVAGSGKTTLVETIYN--SSYIRQNFEYHAWANVDVSHDF--DLRKVFINIL 440 (1108)
Q Consensus 366 ~g~~~~l~~i~~~l~~~-~~~~~~i~i~G~~g~GKT~la~~~~~--~~~~~~~f~~~~w~~v~~s~~~--~~~~l~~~il 440 (1108)
+||+.+++++.+.+... .+.+.++.|+|+||+||||||+.+|+ +..++.+|+..+|++ ++... +...+...++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~--vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK--DSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE--CCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE--ECCCCCCCHHHHHHHHH
Confidence 49999999999999765 44579999999999999999999998 567999999999999 77764 7889999999
Q ss_pred HHHhhhhh------hhhhhHHHHHHHHHHHhcCC-ceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCchHHHHh
Q 048834 441 EQVTRVKI------AEELALNELESRLIRLFQSK-RYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREAFVARA 513 (1108)
Q Consensus 441 ~~l~~~~~------~~~~~~~~l~~~l~~~l~~k-~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~~v~~~ 513 (1108)
.+++.... ....+.+.+...+++.+.++ ++|+|+||+|+..++ .+.. ..|++|++|||...++..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-------~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-------ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-------HTTCEEEEEESBGGGGGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-------cCCCEEEEEcCCHHHHHH
Confidence 99986421 11234567888999999996 999999999997765 2211 169999999999999987
Q ss_pred cCCCcceEecCCCChhhhHHHHhhh
Q 048834 514 FSPSIILLQLRPLNVDESWELFLKK 538 (1108)
Q Consensus 514 ~~~~~~~~~~~~L~~~~~~~lf~~~ 538 (1108)
++....++.+.+|+.++++++|...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHH
Confidence 7655578999999999999999875
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=6.2e-13 Score=145.79 Aligned_cols=221 Identities=15% Similarity=0.129 Sum_probs=108.4
Q ss_pred CccEEecCCcccc-----ccccccCCCCCCcEEeccCCcCc-cCChhh--ccccccCEEEeccccccccccC--CccccC
Q 048834 785 LLRYFGLRWTFLD-----SIPESVGDLPCLETLDLKHTNIT-SLPKSI--WKVKTLRHLYMNDIYLQMSVQK--PFVKYS 854 (1108)
Q Consensus 785 ~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~l~~~~~~~~~~~--~~~l~~ 854 (1108)
.++.|.+.++.+. .++.. ..+.+|++|++++|.+. ..|..+ +++++|++|++++|.+....+. ...+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3556666655432 12221 13455777777777666 455555 6777777777777665432210 011234
Q ss_pred cccccccccccccCCCCChhhhccCcCCceeeeeecccch-hhHHHH--HhhcCCCcEEEEEecCCCCCCCccccCCCCC
Q 048834 855 LTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASL-GQIAKW--IQDLISLESLRLRSLNDFGEPSDLVIGPLNN 931 (1108)
Q Consensus 855 l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~lp~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 931 (1108)
+++|+.|++..+......+..+..+++|+.|+++++.... ..++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l--------------------------- 196 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF--------------------------- 196 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS---------------------------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC---------------------------
Confidence 4555555555444433333444444455555554443210 011111 1122
Q ss_pred ccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCcc----ccccccccceeeeccccccCceeeeCCCCC---C
Q 048834 932 HRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMP----VLGQLKELNILRLFAHSFMGEEMTCGDGGF---P 1004 (1108)
Q Consensus 932 l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~---~ 1004 (1108)
++|++|++++|.+. .++. .++.+++|++|+|++|.+.+. .+..++.+ +
T Consensus 197 -----------------------~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~~ 251 (310)
T 4glp_A 197 -----------------------PAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPRCMWSS 251 (310)
T ss_dssp -----------------------CCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSSCCCCT
T ss_pred -----------------------CCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHhccCcC
Confidence 34555555555443 1111 124456666666666655442 12223333 4
Q ss_pred cccEEEeccCCCCCceeeCCCcccccceEeecccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 1005 KLRVLKLWVQKELREWTIGKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1005 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+|++|++++|. +..+|..+ +++|+.|++++|....+|. +..+++|+.|++++++
T Consensus 252 ~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 252 ALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp TCCCEECCSSC-CCSCCSCC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCCEEECCCCC-CCchhhhh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 66666666554 44555544 2566666666666555443 4555666666666654
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.34 E-value=4.7e-13 Score=158.95 Aligned_cols=189 Identities=21% Similarity=0.195 Sum_probs=134.9
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
+..+.+..+.+..++. +..|.+|+.|++++|.+..+| .+..|++|++|+|++|.+..+|. +..+++|+.|++++|.+
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 4445666666665543 578899999999999999987 58999999999999999998887 99999999999999976
Q ss_pred cccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCC
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPS 922 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~ 922 (1108)
.. ...+..+++|+.|++..+.... +..+..+++|+.|+|+.+... .+ ..+..+++|+.|+|++|.....++
T Consensus 100 ~~----l~~l~~l~~L~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~--~l-~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 100 KD----LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKIT--DI-TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CC----CTTSTTCTTCCEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCC--CC-GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CC----ChhhccCCCCCEEEecCCCCCC--CccccCCCccCEEECCCCccC--Cc-hhhcccCCCCEEECcCCcCCCchh
Confidence 53 1247788888888887775543 245777778888888776553 22 346667777777777665433211
Q ss_pred ccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccC
Q 048834 923 DLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMG 993 (1108)
Q Consensus 923 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 993 (1108)
+.. +++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+..
T Consensus 171 ------l~~----------------------l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 ------LAG----------------------LTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ------GTT----------------------CTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEEC
T ss_pred ------hcc----------------------CCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcC
Confidence 111 2466677777666653 2 346667777777777776654
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=1.8e-12 Score=151.89 Aligned_cols=185 Identities=16% Similarity=0.109 Sum_probs=113.6
Q ss_pred eeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecccc
Q 048834 762 LLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~ 841 (1108)
+|++|+|++|.+..+|..+. .+|++|++++|.+..+| ..+++|++|+|++|.++.+|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 49999999999988988764 78999999999999999 568899999999999998988 665 89999999987
Q ss_pred ccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCC
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEP 921 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~ 921 (1108)
+.. + |. .+++|+.|++..+.... ++. .+++|+.|++++|... .+|. +. ++|+.|++++|.....+
T Consensus 132 l~~-l--p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~--~lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 132 LTM-L--PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT--FLPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp CSC-C--CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS--CCCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCC-C--CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC--Ccch-hh--CCCCEEECcCCCCCchh
Confidence 654 2 22 45666666665554322 222 2345555555544332 2333 22 44555555444332111
Q ss_pred CccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccC
Q 048834 922 SDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMG 993 (1108)
Q Consensus 922 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 993 (1108)
. + . . +| ...++.|+.|+|++|.+. .+|..+..+++|+.|+|++|++.+
T Consensus 197 ~-~-~----~--~L---------------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 197 A-V-P----V--RN---------------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C-C-C-----------------------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred h-H-H----H--hh---------------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 0 0 0 0 00 000123366666666655 455555556666666666666544
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=5.8e-14 Score=157.73 Aligned_cols=133 Identities=15% Similarity=0.097 Sum_probs=90.0
Q ss_pred EEEeCCCCCCCC-chhhcCCCCccEEecCCccccccc-----cccCCCC-CCcEEeccCCcCccC-Chhhccc-----cc
Q 048834 765 VLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIP-----ESVGDLP-CLETLDLKHTNITSL-PKSIWKV-----KT 831 (1108)
Q Consensus 765 ~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp-----~~i~~l~-~L~~L~L~~~~l~~l-p~~i~~l-----~~ 831 (1108)
++.++.+.+... |..+....+|++|++++|.+...+ ..+.+++ +|++|+|++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567888887755 455566666999999999888776 5677888 899999999988854 4456665 88
Q ss_pred cCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccC-cCCceeeeeecccch---hhHHHHHhh-cCC
Q 048834 832 LRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESL-RGLKKLGLTCHIASL---GQIAKWIQD-LIS 906 (1108)
Q Consensus 832 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~---~~lp~~l~~-l~~ 906 (1108)
|++|++++|.+.... +. .+...+..+ ++|+.|+++++.... ..+...+.. .++
T Consensus 82 L~~L~Ls~n~l~~~~--~~--------------------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 139 (362)
T 3goz_A 82 VTSLNLSGNFLSYKS--SD--------------------ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPAS 139 (362)
T ss_dssp CCEEECCSSCGGGSC--HH--------------------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTT
T ss_pred ccEEECcCCcCChHH--HH--------------------HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCc
Confidence 999999888664322 11 011223344 677888887765431 233334444 369
Q ss_pred CcEEEEEecCCCC
Q 048834 907 LESLRLRSLNDFG 919 (1108)
Q Consensus 907 L~~L~l~~~~~~~ 919 (1108)
|++|++++|....
T Consensus 140 L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 140 ITSLNLRGNDLGI 152 (362)
T ss_dssp CCEEECTTSCGGG
T ss_pred eeEEEccCCcCCH
Confidence 9999998876543
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.32 E-value=4.6e-12 Score=136.98 Aligned_cols=152 Identities=22% Similarity=0.209 Sum_probs=128.8
Q ss_pred ccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEE
Q 048834 757 RRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLY 836 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~ 836 (1108)
+..+++|++|++++|.+..+++ ++.+++|++|++++|.+..+|. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEE
T ss_pred HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEE
Confidence 3456779999999999999987 9999999999999999998875 999999999999999999874 689999999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecC
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLN 916 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~ 916 (1108)
+++|.+... ..++.+++|+.|++..+..... +. +..+++|+.|+++++... .++. +..+++|+.|++++|.
T Consensus 141 l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~--~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 141 LGNNKITDI----TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS--DLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCSSCCCCC----GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC--BCGG-GTTCTTCSEEEEEEEE
T ss_pred ccCCcCCcc----hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCC--CChh-hccCCCCCEEECcCCc
Confidence 999977643 3488999999999988865543 33 889999999999988663 4543 7889999999999987
Q ss_pred CCCC
Q 048834 917 DFGE 920 (1108)
Q Consensus 917 ~~~~ 920 (1108)
....
T Consensus 212 i~~~ 215 (291)
T 1h6t_A 212 CLNK 215 (291)
T ss_dssp EECC
T ss_pred ccCC
Confidence 6543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=1.1e-12 Score=153.61 Aligned_cols=55 Identities=24% Similarity=0.305 Sum_probs=48.9
Q ss_pred CccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccc
Q 048834 785 LLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQM 844 (1108)
Q Consensus 785 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 844 (1108)
+|++|++++|.+..+|..+. ++|++|+|++|.++.+| +.+++|++|++++|.+..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST 114 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC
Confidence 89999999999999998774 89999999999999999 568999999999987653
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=6.4e-12 Score=132.90 Aligned_cols=150 Identities=21% Similarity=0.168 Sum_probs=83.9
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChh-hccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 840 (1108)
.++++++++.+..+|..+. .+|++|++++|.+..++. .+.++++|++|+|++|.++.++.. +.++++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4566666666666665544 466666666666655543 456666666666666666644433 566666666666666
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHH-HHhhcCCCcEEEEEecCCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAK-WIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~ 918 (1108)
.+.... +..+..+++|+.|++..+......+..+..+++|+.|+++++... .+|. .+..+++|+.|++++|...
T Consensus 94 ~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 94 QLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp CCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccC--hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCCcCC
Confidence 554221 223455556666655555443333333455666666666655442 3332 4555666666666665544
No 110
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=8e-12 Score=132.17 Aligned_cols=103 Identities=27% Similarity=0.213 Sum_probs=72.9
Q ss_pred CCccEEecCCccccccccccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEeccccccccccCCccccCcccccccc
Q 048834 784 QLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLW 862 (1108)
Q Consensus 784 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 862 (1108)
...++++++++.+..+|..+. .+|++|+|++|.++.++. .++++++|++|++++|.+.... +..+..+++|+.|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC--HhHhccCCcCCEEE
Confidence 467899999999999998876 689999999999987665 5899999999999998765422 33356666777776
Q ss_pred cccccCCCCChhhhccCcCCceeeeeec
Q 048834 863 SLLIGNKSPPLNWLESLRGLKKLGLTCH 890 (1108)
Q Consensus 863 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 890 (1108)
+..+......+..+..+++|+.|+++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCC
Confidence 6655444333333444444444444433
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=2.5e-12 Score=131.79 Aligned_cols=78 Identities=29% Similarity=0.362 Sum_probs=35.8
Q ss_pred eEEEEeCCCCCCCCchh-hcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChh-hccccccCEEEecc
Q 048834 763 LRVLDLEGVYKPVLPET-VGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMND 839 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~ 839 (1108)
|++|+++++.+..+|.. +..+.+|++|++++|.+..+|.. +..+++|++|++++|.++.+|.. ++++++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 44555555444444332 34444555555544444444432 24444455555544444444433 34444444444444
Q ss_pred c
Q 048834 840 I 840 (1108)
Q Consensus 840 ~ 840 (1108)
|
T Consensus 110 N 110 (208)
T 2o6s_A 110 N 110 (208)
T ss_dssp S
T ss_pred C
Confidence 4
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.27 E-value=9.2e-12 Score=126.10 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=115.2
Q ss_pred ccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCC
Q 048834 877 ESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPN 956 (1108)
Q Consensus 877 ~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 956 (1108)
..+++|+.|+++++... .+| .+..+++|++|.+++|... .++ ....+++
T Consensus 41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~-~~~---------------------------~l~~l~~ 89 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHAT-NYN---------------------------PISGLSN 89 (197)
T ss_dssp HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCS-CCG---------------------------GGTTCTT
T ss_pred hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCC-cch---------------------------hhhcCCC
Confidence 45667777777765442 444 4666677777777666221 111 1112368
Q ss_pred cceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceeeCCCcccccceEeec
Q 048834 957 LRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTIGKEAMPELRELEIR 1036 (1108)
Q Consensus 957 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~i~ 1036 (1108)
|++|++++|.+....+..++.+++|+.|++++|.+.+. .+..++.+++|++|++++|..+..+| .+..+++|+.|+++
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 99999999988876788889999999999999988763 34556789999999999998777787 67889999999999
Q ss_pred ccCCCCCCcccCCCCCCCEEEEecCc
Q 048834 1037 CCKKMKKPIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1037 ~c~~l~lp~~l~~l~~L~~L~l~~c~ 1062 (1108)
+|....++ .+..+++|+.|++++++
T Consensus 168 ~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 168 FDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCCcChH-HhccCCCCCEEEeeCcc
Confidence 99887776 77889999999999987
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=1.2e-11 Score=131.29 Aligned_cols=147 Identities=17% Similarity=0.113 Sum_probs=111.2
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|++|++++|.+..+| .++.+.+|++|++++|.+..+|. +.++++|++|++++|.++.+|.... ++|++|++++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~ 115 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN 115 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC
Confidence 444999999999888887 68889999999999998888887 8899999999999998888876443 8899999998
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
|.+... ..++.+++|+.|++..+..... ..+..+++|+.|+++++... .+ ..+..+++|+.|++++|....
T Consensus 116 N~l~~~----~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~--~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 116 NELRDT----DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT--NT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SCCSBS----GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC--BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred CccCCC----hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc--ch-HHhccCCCCCEEeCCCCcccC
Confidence 876542 2377788888887777654432 35677778888887776553 22 445667777777777765543
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=2.9e-13 Score=159.89 Aligned_cols=207 Identities=16% Similarity=0.132 Sum_probs=133.5
Q ss_pred CCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCc
Q 048834 804 GDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLK 883 (1108)
Q Consensus 804 ~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~ 883 (1108)
..+++|+.|+|++|.++.+|..|+++++|+.|++++|...... +. .+..+ ......+..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l--~~------ll~~~-----~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI--IL------LMRAL-----DPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH--HH------HHHHH-----CTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhH--HH------HHHhc-----ccccCCHHHHHHHHhcc
Confidence 5667777777777777777777777777777777554321100 00 00000 01112334444455555
Q ss_pred eee-eeecccchhhHHH------HHh--hcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCC
Q 048834 884 KLG-LTCHIASLGQIAK------WIQ--DLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLP 954 (1108)
Q Consensus 884 ~L~-l~~~~~~~~~lp~------~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 954 (1108)
.|+ ++.+.. ..++. .+. ....|+.|++++|..... |. ...+
T Consensus 413 ~L~~l~~n~~--~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l------------------------p~----~~~l 462 (567)
T 1dce_A 413 AVDPMRAAYL--DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL------------------------CH----LEQL 462 (567)
T ss_dssp HHCGGGHHHH--HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC------------------------CC----GGGG
T ss_pred cCcchhhccc--chhhhhhhhcccccccCccCceEEEecCCCCCCC------------------------cC----cccc
Confidence 554 232211 11111 011 123688888887754431 10 1112
Q ss_pred CCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCce--eeCCCcccccce
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREW--TIGKEAMPELRE 1032 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--p~~~~~l~~L~~ 1032 (1108)
++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+.+ ++ .++.+++|+.|++++|. +..+ |..++.+++|+.
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCE
Confidence 58899999999887 788889999999999999999876 55 68899999999999986 5555 788889999999
Q ss_pred EeecccCCCCCCccc----CCCCCCCEEEE
Q 048834 1033 LEIRCCKKMKKPIEL----EKLSSLKELTL 1058 (1108)
Q Consensus 1033 L~i~~c~~l~lp~~l----~~l~~L~~L~l 1058 (1108)
|++++|+...+|... ..+++|+.|++
T Consensus 538 L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 538 LNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999887765433 33788888863
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.21 E-value=4.6e-12 Score=134.58 Aligned_cols=146 Identities=19% Similarity=0.103 Sum_probs=115.5
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+.++..++++++.+..++ .+..+.+|++|++++|.+..+| .+..+++|++|+|++|.++.+|. ++++++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 334777889999998888 6889999999999999999998 78999999999999999999887 99999999999999
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 918 (1108)
|.+.... . +.. ++|+.|++..+.... ...+..+++|+.|+++++... .++ .+..+++|+.|++++|...
T Consensus 95 N~l~~l~---~-~~~-~~L~~L~L~~N~l~~--~~~l~~l~~L~~L~Ls~N~i~--~~~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 95 NRLKNLN---G-IPS-ACLSRLFLDNNELRD--TDSLIHLKNLEILSIRNNKLK--SIV-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SCCSCCT---T-CCC-SSCCEEECCSSCCSB--SGGGTTCTTCCEEECTTSCCC--BCG-GGGGCTTCCEEECTTSCCC
T ss_pred CccCCcC---c-ccc-CcccEEEccCCccCC--ChhhcCcccccEEECCCCcCC--CCh-HHccCCCCCEEECCCCcCc
Confidence 9775422 2 223 788888887775543 245777888888888877653 333 4677788888888776544
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=2.9e-11 Score=118.98 Aligned_cols=106 Identities=21% Similarity=0.145 Sum_probs=83.4
Q ss_pred CCCeeEEEEeCCCCCC--CCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCcc-CChhhccccccCEE
Q 048834 759 GYRLLRVLDLEGVYKP--VLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITS-LPKSIWKVKTLRHL 835 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L 835 (1108)
..++|++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..++++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 3567999999999988 8998899999999999999998888 778999999999999999886 77778889999999
Q ss_pred EeccccccccccCCccccCcccccccccccc
Q 048834 836 YMNDIYLQMSVQKPFVKYSLTNLQTLWSLLI 866 (1108)
Q Consensus 836 ~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 866 (1108)
++++|.+... +.+..++.+++|+.|++..+
T Consensus 101 ~Ls~N~l~~~-~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 101 NLSGNKLKDI-STLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp ECBSSSCCSS-GGGGGGSSCSCCCEEECCSS
T ss_pred eccCCccCcc-hhHHHHhcCCCCCEEEeeCC
Confidence 9999866432 11123444444444444433
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=2e-11 Score=117.32 Aligned_cols=126 Identities=19% Similarity=0.102 Sum_probs=94.3
Q ss_pred CCeeEEEEeCCCCCC--CCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCcc-CChhhccccccCEEE
Q 048834 760 YRLLRVLDLEGVYKP--VLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITS-LPKSIWKVKTLRHLY 836 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~ 836 (1108)
.++|++|++++|.+. .+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.++. +|..++.+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 456999999999988 8899889999999999999998888 778999999999999999987 887788899999999
Q ss_pred eccccccccccCCccccCcccccccccccccCCCCCh---hhhccCcCCceeee
Q 048834 837 MNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPL---NWLESLRGLKKLGL 887 (1108)
Q Consensus 837 l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~---~~l~~l~~L~~L~l 887 (1108)
+++|.+... +.+..++.+++|+.|++..+......+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDL-STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSH-HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCCh-HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 999876431 112335566666666655553332222 23444555555544
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.19 E-value=3.6e-11 Score=123.85 Aligned_cols=130 Identities=22% Similarity=0.200 Sum_probs=98.0
Q ss_pred CeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 837 (1108)
++|++|+++++.+..+|. .+..+.+|++|+|++|.+..+ |..+..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 358888888888887765 678888888888888888776 67788888888888888888888776 477888888888
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeeccc
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 892 (1108)
++|.+.... +..+..+++|+.|++..+......+..+..+++|+.|+++++..
T Consensus 112 ~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLR--VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCEeC--HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 888765432 34567778888887777766555555567777777777776543
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.18 E-value=2.9e-11 Score=124.65 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=87.0
Q ss_pred eEEEEeCCCCCCCCch--hhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChh-hccccccCEEEec
Q 048834 763 LRVLDLEGVYKPVLPE--TVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMN 838 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~ 838 (1108)
+++|+|++|.+..+++ .+..+.+|++|++++|.+..+|. .+..+++|++|+|++|.++.+|.. ++.+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 6777777777776632 36777777777777777776654 577777777777777777766654 6777777777777
Q ss_pred cccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecc
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHI 891 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 891 (1108)
+|.+.... +..+..+++|+.|++..+......+..+..+++|+.|+++++.
T Consensus 114 ~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 114 SNRITCVG--NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TSCCCCBC--TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCCeEC--HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77665432 3446667777777776665554445666667777777776553
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.17 E-value=6.7e-11 Score=121.86 Aligned_cols=150 Identities=16% Similarity=0.164 Sum_probs=112.5
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccC-ChhhccccccCEEEecccc
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSL-PKSIWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~~ 841 (1108)
+.++++++.+..+|..+. .+|+.|++++|.+..+|. .+..+++|++|+|++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567788888888887664 688888888888887765 677888888888888888865 6678888888888888887
Q ss_pred ccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCC
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 918 (1108)
+... + +..+..+++|+.|++..+......+..+..+++|+.|+++++... ...+..+..+++|+.|++++|...
T Consensus 92 l~~l-~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITEL-P-KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCC-C-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcc-C-HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence 6532 2 233577888888888887776666677888888888888877653 222334667788888888877543
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=9.9e-12 Score=151.75 Aligned_cols=105 Identities=27% Similarity=0.293 Sum_probs=60.1
Q ss_pred CCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEec
Q 048834 759 GYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMN 838 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~ 838 (1108)
.+++|++|+|++|.+..+|..+..+.+|++|+|++|.+..+|..+++|++|++|+|++|.|+.+|..+++|++|++|+++
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence 44556666666666666666555666666666666666666666666666666666666666666666666666666666
Q ss_pred cccccccccCCccccCcccccccccccc
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLI 866 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 866 (1108)
+|.+. .+|..+++|++|+.|++..+
T Consensus 302 ~N~l~---~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 302 DNMVT---TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SSCCC---CCCSSTTSCTTCCCEECTTS
T ss_pred CCCCC---ccChhhhcCCCccEEeCCCC
Confidence 65442 12333444444444444433
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=4.3e-11 Score=122.52 Aligned_cols=149 Identities=23% Similarity=0.195 Sum_probs=97.2
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChh-hccccccCEEEecccc
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 841 (1108)
+.++++++.+..+|..+ ..+|++|+++++.+..+|.. +..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45666666666776544 34777777777777776654 56777777777777777766654 4677777777777776
Q ss_pred ccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHH-HHhhcCCCcEEEEEecCCC
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAK-WIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~-~l~~l~~L~~L~l~~~~~~ 918 (1108)
+.... +..++.+++|+.|++..+......+..+..+++|+.|+++.+... .+|. .+..+++|+.|++++|...
T Consensus 88 l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 88 LQSLP--NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK--SVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCccC--HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc--eeCHHHhccCCCccEEEecCCCee
Confidence 54321 233567777777777766554444445667777777777766543 2332 3566777777777776433
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.16 E-value=1e-10 Score=115.99 Aligned_cols=138 Identities=16% Similarity=0.094 Sum_probs=107.0
Q ss_pred hhhhcccCCCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhh-cccc
Q 048834 752 NKMINRRGYRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSI-WKVK 830 (1108)
Q Consensus 752 ~~~~~~~~l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i-~~l~ 830 (1108)
...+.+..+++|++|++++|.+..+|......++|++|++++|.+..+ ..+..+++|++|++++|.++.+|+.+ +.++
T Consensus 10 ~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 10 EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp HTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 344556678889999999999998865433344999999999999988 67899999999999999999988776 8999
Q ss_pred ccCEEEeccccccccccCCccccCcccccccccccccCCCCChh----hhccCcCCceeeeeeccc
Q 048834 831 TLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLN----WLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 831 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 892 (1108)
+|++|++++|.+.. .+....++.+++|+.|++..+.... .+. .+..+++|+.|+++.+..
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999997743 2222257778888888877765542 233 367778888888776654
No 124
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=7.8e-11 Score=122.29 Aligned_cols=129 Identities=25% Similarity=0.189 Sum_probs=99.8
Q ss_pred CeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChh-hccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 837 (1108)
++|++|+|++|.+..+ |..+..+.+|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 5588999999888877 56688888999999999888888754 57888999999999888877765 578889999999
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeeccc
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 892 (1108)
++|.+. ..|..+..+++|+.|++..+.........+..+++|+.|++.++..
T Consensus 120 s~N~l~---~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 120 CCNKLT---ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CSSCCC---SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccc---ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 888765 3355577888888888877755544445577777888888876543
No 125
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=1.5e-10 Score=120.25 Aligned_cols=148 Identities=18% Similarity=0.104 Sum_probs=85.5
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 840 (1108)
.+.++++++.+..+|..+. .+|++|++++|.+..+ |..+..+++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3455666666666665443 5666666666666655 44566666666666666666666544 456666666666666
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHH-HHHhhcCCCcEEEEEecCC
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIA-KWIQDLISLESLRLRSLND 917 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp-~~l~~l~~L~~L~l~~~~~ 917 (1108)
.+.... +..+..+++|+.|++..+... .++..+..+++|+.|+++++... .+| ..+..+++|+.|.+.+|..
T Consensus 99 ~l~~l~--~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLP--SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK--SIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCC--TTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC--CCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCccC--hhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC--ccCHHHHhCCCCCCEEEeeCCCc
Confidence 554221 222456666666666655443 44555666666666666655442 222 2345566666666665543
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=119.80 Aligned_cols=152 Identities=15% Similarity=0.079 Sum_probs=121.4
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc--ccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEecc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE--SVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMND 839 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~ 839 (1108)
-+.++++++.+..+|..+. ..+++|++++|.+..++. .+..+++|++|+|++|.++.+|. .++++++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 3578899998888887664 457899999998888743 37889999999999999887766 688999999999999
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDFG 919 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~~ 919 (1108)
|.+.... +..+..+++|+.|++..+......+..+..+++|+.|+++++... ...|..+..+++|+.|++++|....
T Consensus 91 N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQ--HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCC--GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccC--HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCCcC
Confidence 8775432 444788999999999888777666777888999999999887664 3336777888999999998876543
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.08 E-value=1.2e-10 Score=130.46 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=60.7
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccc-cC-CCCCCcEEeccCCcCccCCh-hhccccccCEEEeccc
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPES-VG-DLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~-~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 840 (1108)
++++++++.+..+|..+. .++++|+|++|.+..+|.. +. ++++|++|+|++|.++.+|. .+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 466777777777776543 3567777777777776654 33 67777777777777776654 3677777777777776
Q ss_pred cccccccCCccccCcccccccccccc
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLI 866 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~ 866 (1108)
.+.... +..+..+++|+.|++..+
T Consensus 99 ~l~~~~--~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 99 HLHTLD--EFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp CCCEEC--TTTTTTCTTCCEEECCSS
T ss_pred cCCcCC--HHHhCCCcCCCEEECCCC
Confidence 553221 222344444444444333
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=6.6e-11 Score=144.47 Aligned_cols=85 Identities=26% Similarity=0.309 Sum_probs=55.8
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|++|+|++|.+..+|..|+.|.+|++|+|++|.+..+|..+++|++|++|+|++|.|+.+|..+++|++|++|++++
T Consensus 246 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 44466666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ccccc
Q 048834 840 IYLQM 844 (1108)
Q Consensus 840 ~~~~~ 844 (1108)
|.+.+
T Consensus 326 N~l~~ 330 (727)
T 4b8c_D 326 NPLEK 330 (727)
T ss_dssp SCCCS
T ss_pred CccCC
Confidence 65543
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=3e-10 Score=127.08 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=106.0
Q ss_pred eeEEEEeCCCCCCCCchh-hc-CCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChh-hccccccCEEEe
Q 048834 762 LLRVLDLEGVYKPVLPET-VG-KLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYM 837 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~~-i~-~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 837 (1108)
.+++|+|++|.+..+|.. +. .+.+|++|+|++|.+..+|. .+.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 378888888888877654 44 78888888888888887764 578888888888888888877654 778888888888
Q ss_pred ccccccccccCCccccCcccccccccccccCCCCChhhh---ccCcCCceeeeeecccchhhHHHHHhhcCC--CcEEEE
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWL---ESLRGLKKLGLTCHIASLGQIAKWIQDLIS--LESLRL 912 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~--L~~L~l 912 (1108)
++|.+.... +..+..+++|+.|++..+....-....+ ..+++|+.|+++++... .--+..+..+++ |+.|.+
T Consensus 120 ~~N~i~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 120 YNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CSSCCCEEC--TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEEC
T ss_pred CCCcccEEC--HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEe
Confidence 888765432 4457778888888877765543222223 56788888888876553 222244555554 366777
Q ss_pred EecCC
Q 048834 913 RSLND 917 (1108)
Q Consensus 913 ~~~~~ 917 (1108)
.+|..
T Consensus 197 ~~N~~ 201 (361)
T 2xot_A 197 HNNPL 201 (361)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 76543
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=4.2e-10 Score=113.10 Aligned_cols=124 Identities=20% Similarity=0.190 Sum_probs=80.0
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccc--cCCCCCCcEEeccCCcCccC-ChhhccccccCEEEeccc
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPES--VGDLPCLETLDLKHTNITSL-PKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~--i~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~l~~~ 840 (1108)
++++++++.+..+|..+.. +|++|++++|.+..+|.. +..+++|++|+|++|.++.+ |..++.+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765543 677777777777766653 66777777777777777655 556777777777777777
Q ss_pred cccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecc
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHI 891 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 891 (1108)
.+.... +..+..+++|+.|++..+......+..+..+++|+.|+++++.
T Consensus 89 ~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEIS--NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEEC--SSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccC--HHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 654332 2335566666666666655544445556666677777776553
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=7.2e-10 Score=111.29 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=59.5
Q ss_pred EEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEecccccc
Q 048834 765 VLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDIYLQ 843 (1108)
Q Consensus 765 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~ 843 (1108)
+++++++.+..+|..+. .+|++|++++|.+..+|..+.++++|++|+|++|.++.++. .+..+++|++|++++|.+.
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 44445544444544332 34555555555555555445555555555555555544433 2445555555555554443
Q ss_pred ccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecc
Q 048834 844 MSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHI 891 (1108)
Q Consensus 844 ~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 891 (1108)
... +..+..+++|+.|++..+.........+..+++|+.|+++++.
T Consensus 92 ~i~--~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIP--PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeC--HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 221 2224444555555444443332223345566677777776553
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=3.8e-10 Score=110.87 Aligned_cols=136 Identities=21% Similarity=0.118 Sum_probs=111.4
Q ss_pred cCCCCccEEecCCcccc--ccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCcccc
Q 048834 781 GKLQLLRYFGLRWTFLD--SIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNL 858 (1108)
Q Consensus 781 ~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 858 (1108)
....+|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+... .+..++.+++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L 97 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG--LDMLAEKLPNL 97 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC--CCHHHHHCTTC
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH--HHHHHhhCCCC
Confidence 34578999999999988 8999999999999999999999888 7799999999999999987654 35556679999
Q ss_pred cccccccccCCCC-ChhhhccCcCCceeeeeecccchhhHH----HHHhhcCCCcEEEEEecCCCCCC
Q 048834 859 QTLWSLLIGNKSP-PLNWLESLRGLKKLGLTCHIASLGQIA----KWIQDLISLESLRLRSLNDFGEP 921 (1108)
Q Consensus 859 ~~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~lp----~~l~~l~~L~~L~l~~~~~~~~~ 921 (1108)
+.|++..+..... .+..+..+++|+.|+++++... .+| ..+..+++|+.|++++|.....+
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT--NLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG--TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc--chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 9999988865442 2367888999999999987653 344 36788899999999988765543
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=4.8e-11 Score=120.92 Aligned_cols=143 Identities=18% Similarity=0.180 Sum_probs=112.4
Q ss_pred eEEEEeCCC--CCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccc
Q 048834 763 LRVLDLEGV--YKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~--~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~ 840 (1108)
|+.+.+.++ .+..+|..++.+++|++|++++|.+..+| .+.++++|++|++++|.++.+|..++.+++|++|++++|
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 677777765 57788889999999999999999888888 888999999999999988899988888899999999998
Q ss_pred cccccccCCccccCcccccccccccccCCCC-ChhhhccCcCCceeeeeecccchhhHH----------HHHhhcCCCcE
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLIGNKSP-PLNWLESLRGLKKLGLTCHIASLGQIA----------KWIQDLISLES 909 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~lp----------~~l~~l~~L~~ 909 (1108)
.+.. . + .++.+++|+.|++..+..... ....+..+++|+.|+++++... ...| ..+..+++|+.
T Consensus 104 ~l~~-l--~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 104 QIAS-L--S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY-NDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp ECCC-H--H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH-HHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCc-C--C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc-cccccccchHHHHHHHHHhCCCcEE
Confidence 7654 2 2 477888888888887755431 1246788899999999887553 2222 23677888888
Q ss_pred EE
Q 048834 910 LR 911 (1108)
Q Consensus 910 L~ 911 (1108)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.96 E-value=9.9e-10 Score=129.65 Aligned_cols=102 Identities=24% Similarity=0.246 Sum_probs=78.2
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYL 842 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 842 (1108)
|++|+|++|.+..+|. ++.+.+|++|+|++|.+..+|..++++++|++|+|++|.++.+| .++++++|++|++++|.+
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 7888888888888876 88888888888888888888888888888888888888888887 788888888888888766
Q ss_pred cccccCCccccCccccccccccccc
Q 048834 843 QMSVQKPFVKYSLTNLQTLWSLLIG 867 (1108)
Q Consensus 843 ~~~~~~~~~l~~l~~L~~L~~~~~~ 867 (1108)
.... .|..++.+++|+.|++..+.
T Consensus 521 ~~~~-~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 521 QQSA-AIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CSSS-TTGGGGGCTTCCEEECTTSG
T ss_pred CCCC-CcHHHhcCCCCCEEEecCCc
Confidence 4321 14446666666666665553
No 135
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.96 E-value=1.7e-09 Score=143.24 Aligned_cols=169 Identities=19% Similarity=0.249 Sum_probs=130.7
Q ss_pred ccCCCCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccc-cccC-ceeEEEEeccCCCc--CHH
Q 048834 358 ILGPEAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYI-RQNF-EYHAWANVDVSHDF--DLR 433 (1108)
Q Consensus 358 ~~~~~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~-~~~f-~~~~w~~v~~s~~~--~~~ 433 (1108)
++.....++||+.+++++.+.+....+.++++.|+|+||+||||||+.+|++... ..+| +.+.|+. ++... +..
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS--IGKQDKSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE--CCSCCHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE--ECCcCchHHH
Confidence 4456677899999999999999877677899999999999999999999988533 4444 5677999 66543 334
Q ss_pred HHHHHHHHHHhhhhh---hhhhhHHHHHHHHHHHhcCC--ceEEEEeCCCChhhHHHHHHHhCCCCCCCCCEEEEEcCch
Q 048834 434 KVFINILEQVTRVKI---AEELALNELESRLIRLFQSK--RYLIVLDDVHLPGAWYELQRIFSPNTSSSGSRVILLTREA 508 (1108)
Q Consensus 434 ~l~~~il~~l~~~~~---~~~~~~~~l~~~l~~~l~~k--~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~iivttr~~ 508 (1108)
..+..+...+..... ....+.+.+...++..+.++ ++|||+||+|+..+|+.+ .+|++|++|||+.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~---------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF---------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT---------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh---------cCCCEEEEEcCCH
Confidence 445556666654321 22356778888899999877 999999999998766432 3799999999999
Q ss_pred HHHHhcCCCcceEecCC-CChhhhHHHHhh
Q 048834 509 FVARAFSPSIILLQLRP-LNVDESWELFLK 537 (1108)
Q Consensus 509 ~v~~~~~~~~~~~~~~~-L~~~~~~~lf~~ 537 (1108)
.++..+......+.+.. |+.++++++|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~ 297 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSL 297 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHH
Confidence 98866555567888886 999999998753
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.95 E-value=6e-10 Score=106.91 Aligned_cols=127 Identities=18% Similarity=0.102 Sum_probs=100.4
Q ss_pred CCCCccEEecCCcccc--ccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCccccc
Q 048834 782 KLQLLRYFGLRWTFLD--SIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQ 859 (1108)
Q Consensus 782 ~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 859 (1108)
...+|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|.+... .+..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCCC
Confidence 3478999999999888 8999899999999999999999888 7789999999999999987653 345566788888
Q ss_pred ccccccccCCC-CChhhhccCcCCceeeeeecccchhhHH----HHHhhcCCCcEEEEE
Q 048834 860 TLWSLLIGNKS-PPLNWLESLRGLKKLGLTCHIASLGQIA----KWIQDLISLESLRLR 913 (1108)
Q Consensus 860 ~L~~~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~lp----~~l~~l~~L~~L~l~ 913 (1108)
.|++..+.... ..+..+..+++|+.|+++++... .+| ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT--NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG--GSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc--chHHHHHHHHHHCCCcccccCC
Confidence 88888776543 22367788888888888877553 333 367778888887654
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=4.2e-09 Score=116.22 Aligned_cols=259 Identities=13% Similarity=0.024 Sum_probs=141.2
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCC--------CCCCcEEeccCCcCccCChh-hccc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGD--------LPCLETLDLKHTNITSLPKS-IWKV 829 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~--------l~~L~~L~L~~~~l~~lp~~-i~~l 829 (1108)
+++|++|+|+++.+......-+.+..+..+.+..+ .+|. .+.+ +.+|+.|+|.. .++.++.. +..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 55577777777665511111111222233333332 3332 2345 78888888877 67777664 6778
Q ss_pred cccCEEEeccccccccccCCccccCcccccccccccccC----CCCChhhhccCcCCc-eeeeeecccchhhHHHHHh--
Q 048834 830 KTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGN----KSPPLNWLESLRGLK-KLGLTCHIASLGQIAKWIQ-- 902 (1108)
Q Consensus 830 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~----~~~~~~~l~~l~~L~-~L~l~~~~~~~~~lp~~l~-- 902 (1108)
++|+.|++.++...... +..+..+.++..+....... ..-....+..+..|+ .+.+... ..++..+.
T Consensus 124 ~~L~~l~l~~n~i~~i~--~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~----~~l~~~~~~~ 197 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLL--PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM----GKLEDEIMKA 197 (329)
T ss_dssp TTCCEEEBCCSSCCEEC--TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT----CCHHHHHHHT
T ss_pred cccceEEcCCCCccccc--hhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC----CcHHHHHhhc
Confidence 88888888776543222 22244444444443222100 000011122333443 2222211 22333322
Q ss_pred --hcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccc
Q 048834 903 --DLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKE 980 (1108)
Q Consensus 903 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 980 (1108)
...++..+.+.+.-...... .+...+++|+.|+|.+|.+..-....+.++++
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~--------------------------~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFK--------------------------LIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHH--------------------------HHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccCccccceEEEeeeecHHHHH--------------------------HHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 12344444444321000000 00001258888888887776444556788999
Q ss_pred cceeeeccccccCceeeeCCCCCCccc-EEEeccCCCCCcee-eCCCcccccceEeecccCCCCC-CcccCCCCCCCEEE
Q 048834 981 LNILRLFAHSFMGEEMTCGDGGFPKLR-VLKLWVQKELREWT-IGKEAMPELRELEIRCCKKMKK-PIELEKLSSLKELT 1057 (1108)
Q Consensus 981 L~~L~L~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~lp-~~~~~l~~L~~L~i~~c~~l~l-p~~l~~l~~L~~L~ 1057 (1108)
|+.|.|.++ + .......+..+++|+ .|.+.+ .++.++ ..+..|++|+.|++.++....+ +..+.++++|+.+.
T Consensus 252 L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 252 LLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCEEECCcc-c-ceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 999999876 3 323344567888999 999987 577776 4577899999999988877664 44678889999876
Q ss_pred E
Q 048834 1058 L 1058 (1108)
Q Consensus 1058 l 1058 (1108)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 3
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.85 E-value=1.6e-08 Score=100.09 Aligned_cols=125 Identities=25% Similarity=0.210 Sum_probs=63.0
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChh-hccccccCEEEecccc
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 841 (1108)
+.++++++.+..+|..+. .+|++|+++++.+..+|.. +..+++|++|++++|.++.+|.. ++.+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 445555555555554332 4555555555555554433 34555555555555555554443 3555555555555554
Q ss_pred ccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeeccc
Q 048834 842 LQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 842 ~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 892 (1108)
+.... +..++.+++|+.|++..+......+..+..+++|+.|+++++..
T Consensus 88 l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 88 LQSLP--NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCC--TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccccC--HHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 43211 22234555555555554433322223345667777777776543
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.85 E-value=6.2e-09 Score=104.43 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=89.7
Q ss_pred CeeEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEec
Q 048834 761 RLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMN 838 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~ 838 (1108)
++|++|+++++.+..+|..+..+.+|++|++++|.+..+|. .+..+++|++|+|++|.++.+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 35999999999999999999999999999999999998874 58899999999999999998776 58999999999999
Q ss_pred cccccccccCCccccCcccccccccccc
Q 048834 839 DIYLQMSVQKPFVKYSLTNLQTLWSLLI 866 (1108)
Q Consensus 839 ~~~~~~~~~~~~~l~~l~~L~~L~~~~~ 866 (1108)
+|.+.... +..+..+++|+.|++..+
T Consensus 111 ~N~l~~~~--~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 111 GNDISVVP--EGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SSCCCBCC--TTTTTTCTTCCEEECCSS
T ss_pred CCCCCeeC--hhhhhcCccccEEEeCCC
Confidence 99876422 334778899999877655
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.83 E-value=3.7e-11 Score=121.76 Aligned_cols=124 Identities=22% Similarity=0.158 Sum_probs=103.1
Q ss_pred CCeeEEEEeCCCCCCCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 760 YRLLRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 760 l~~Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+++|++|++++|.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|.++.+| .++++++|++|++++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCC
Confidence 555999999999998888 899999999999999999999988888899999999999999887 699999999999999
Q ss_pred ccccccccCCccccCcccccccccccccCCCCCh----------hhhccCcCCceee
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPL----------NWLESLRGLKKLG 886 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~----------~~l~~l~~L~~L~ 886 (1108)
|.+..... ...+..+++|+.|++..+......+ ..+..+++|+.|+
T Consensus 125 N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 125 NKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCchhH-HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 97754221 2347889999999988775432222 2378889999987
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=4e-09 Score=104.35 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=105.2
Q ss_pred hhcCCCCccEEecCCccccccccccCCCC-CCcEEeccCCcCccCChhhccccccCEEEeccccccccccCCccccCccc
Q 048834 779 TVGKLQLLRYFGLRWTFLDSIPESVGDLP-CLETLDLKHTNITSLPKSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTN 857 (1108)
Q Consensus 779 ~i~~l~~L~~L~l~~~~i~~lp~~i~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 857 (1108)
.+.++.+|++|++++|.+..+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+... + +..++.+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-~-~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI-G-EGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE-C-SCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc-C-cchhhcCCC
Confidence 45678899999999999998875 55554 999999999999988 6799999999999999987642 1 232478999
Q ss_pred ccccccccccCCCCChh--hhccCcCCceeeeeecccchhhHHHH----HhhcCCCcEEEEEecCC
Q 048834 858 LQTLWSLLIGNKSPPLN--WLESLRGLKKLGLTCHIASLGQIAKW----IQDLISLESLRLRSLND 917 (1108)
Q Consensus 858 L~~L~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~lp~~----l~~l~~L~~L~l~~~~~ 917 (1108)
|+.|++..+... .++. .+..+++|+.|+++++... .+|.. +..+++|+.|+++.+..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999887653 3444 7888999999999987663 44553 78889999999887653
No 142
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.83 E-value=6e-10 Score=99.18 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=57.9
Q ss_pred chhHHHHHHHHhHhHhhcCH--HHHHHHHHHHHHHHHhhhhhcCC--------------CchhHHHhhhhhhhHHHHHHH
Q 048834 5 TTVLPVIVKLREVEKEIIDP--ALASQVRDSIKELKSLEGQEGNG--------------LSPEFLRAVYLAEDTIDTFLK 68 (1108)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~--------------~~~~~~~~~~~~ed~~d~~~~ 68 (1108)
+++.+++.|++..+..+... ++.++++.++++|+.++..+.++ |+.++|+++||+||+||+|.+
T Consensus 1 a~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~ 80 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80 (115)
T ss_dssp CTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999998776644 88999999999999999876543 999999999999999999999
Q ss_pred HHHh
Q 048834 69 EIRK 72 (1108)
Q Consensus 69 ~~~~ 72 (1108)
+..+
T Consensus 81 ~~~~ 84 (115)
T 3qfl_A 81 QVDG 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7643
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.82 E-value=2.9e-09 Score=106.87 Aligned_cols=128 Identities=20% Similarity=0.044 Sum_probs=103.2
Q ss_pred ccEEecCCccccccccccCCCCCCcEEeccCCcCccCChh--hccccccCEEEeccccccccccCCccccCccccccccc
Q 048834 786 LRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNITSLPKS--IWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWS 863 (1108)
Q Consensus 786 L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~ 863 (1108)
-++++++++.++.+|..+.. +|++|++++|.++.+|.. ++++++|++|++++|.+.... +..++.+++|+.|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--PNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC--HhHcCCcccCCEEEC
Confidence 37999999999999987754 999999999999988864 899999999999999876543 455888999999998
Q ss_pred ccccCCCCChhhhccCcCCceeeeeecccchhhHHHHHhhcCCCcEEEEEecCCC
Q 048834 864 LLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 864 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~L~~L~l~~~~~~ 918 (1108)
..+......+..+..+++|+.|+++++... ...|..+..+++|+.|++++|...
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCC-eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 888766555566778888888888877654 344666777788888888776544
No 144
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.75 E-value=3.2e-09 Score=121.62 Aligned_cols=166 Identities=12% Similarity=0.015 Sum_probs=99.2
Q ss_pred hhhhhhHHHhh-hc---C---CCCCceEeEEccCCCChhhHHHHhcCCccccc-----CCcc-eeEEEcCCCCCHHHHHH
Q 048834 170 NDEVKGLAELI-LS---D---YPSPLHIPVVDVAGSAETPELWKIYSCDDIKN-----HFQC-RAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 170 ~~~~~~~~~~l-~~---~---~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~-----~F~~-~~~~~~s~~~~~~~l~~ 236 (1108)
+.+.+.+..++ .. + ....-+|+|+|++|+||||||+++++. ... .|+. .+|+......+...+..
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR--VSEAAAKEGLTVKQAYVNAFNAPNLYTILS 105 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH--HHHHHHHTTCCEEEEEEEGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH--HHHHHhccCCceeEEEEECCCCCCHHHHHH
Confidence 36666776666 32 2 223333444999999999999999954 333 2332 45777667778899999
Q ss_pred HHHHHhCCCchhHHHHhhcchHHHHHHHcc--CCeEEEEEcCCCCh--------hhHhHhhhhCCCC---C--CCcEEEE
Q 048834 237 NILNQFAPTDVELEEKLLESPQTVVHNYLI--HKRYLVILTDVRTP--------DIWEIIKFLFPNS---L--SGSRVIL 301 (1108)
Q Consensus 237 ~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDVw~~--------~~~~~l~~~~~~~---~--~GSrIii 301 (1108)
.++.++........ .+...+...+.+.+. +++++|||||+|.. +.+..+...+... + ....||+
T Consensus 106 ~l~~~l~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~ 184 (412)
T 1w5s_A 106 LIVRQTGYPIQVRG-APALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLL 184 (412)
T ss_dssp HHHHHHTCCCCCTT-CCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEE
T ss_pred HHHHHhCCCCCCCC-CCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEE
Confidence 99998864321100 011223444555554 78999999999863 2344333322111 2 3344888
Q ss_pred Eecchhhhhhcc---c---cccccccchhHHhhhccccccccc
Q 048834 302 SFREADAAMHRN---L---NFFGGDLNLSFKEMKARYPLHEAV 338 (1108)
Q Consensus 302 TTR~~~Va~~~~---~---~~~~~~~~~~~l~~~~~~~Lf~~~ 338 (1108)
||++.++..... . ......+.+.+++.++.+.++...
T Consensus 185 ~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 185 VASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQR 227 (412)
T ss_dssp EEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred EeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHH
Confidence 998766442221 0 011123788888888888888644
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=3.5e-08 Score=96.92 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=45.4
Q ss_pred EEEEeCCCCCCCCchhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEecccc
Q 048834 764 RVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 764 r~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 841 (1108)
+.++++++.+..+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++|.|+.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666666665443 5666666666665555 34455666666666666666655554 3556666666666554
Q ss_pred cc
Q 048834 842 LQ 843 (1108)
Q Consensus 842 ~~ 843 (1108)
+.
T Consensus 93 l~ 94 (174)
T 2r9u_A 93 LK 94 (174)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=3.8e-08 Score=96.39 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=59.5
Q ss_pred eEEEEeCCCCCCCCchhhcCCCCccEEecCCcccccc-ccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEeccc
Q 048834 763 LRVLDLEGVYKPVLPETVGKLQLLRYFGLRWTFLDSI-PESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDI 840 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~ 840 (1108)
.+.|+++++.+..+|..+. .+|++|+|++|.+..+ |..+.++++|++|+|++|.++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5677888888888877653 7788888888877777 45577788888888888888777765 467888888888777
Q ss_pred ccc
Q 048834 841 YLQ 843 (1108)
Q Consensus 841 ~~~ 843 (1108)
.+.
T Consensus 89 ~l~ 91 (170)
T 3g39_A 89 QLK 91 (170)
T ss_dssp CCC
T ss_pred ccC
Confidence 654
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.67 E-value=5e-08 Score=96.54 Aligned_cols=105 Identities=27% Similarity=0.323 Sum_probs=87.1
Q ss_pred CeeEEEEeCCCCCCCCchh-hcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChh-hccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKPVLPET-VGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 837 (1108)
++|++|+++++.+..+|.. ++.+.+|++|++++|.+..+|.. +..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4599999999998888764 68899999999999999988765 58899999999999999988775 688999999999
Q ss_pred ccccccccccCCccccCccccccccccccc
Q 048834 838 NDIYLQMSVQKPFVKYSLTNLQTLWSLLIG 867 (1108)
Q Consensus 838 ~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~ 867 (1108)
++|.+.. .+ +..+..+++|+.|++..+.
T Consensus 108 ~~N~l~~-~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLKS-VP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCSC-CC-TTTTTTCTTCCEEECCSSC
T ss_pred cCCcceE-eC-HHHhcCCcccCEEEecCCC
Confidence 9987763 22 3335778999999887663
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.65 E-value=4.3e-08 Score=96.28 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=75.6
Q ss_pred CeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChh-hccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 837 (1108)
++|++|+|++|.+..+ |..+..+.+|++|+|++|.+..+|.. +.++++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4599999999999988 56789999999999999999999887 47999999999999999999886 899999999999
Q ss_pred cccccc
Q 048834 838 NDIYLQ 843 (1108)
Q Consensus 838 ~~~~~~ 843 (1108)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 998664
No 149
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=8.3e-08 Score=105.75 Aligned_cols=236 Identities=14% Similarity=0.017 Sum_probs=128.7
Q ss_pred eEEEEeCCCCCCCCc-hhhcC--------CCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChh-hccccc
Q 048834 763 LRVLDLEGVYKPVLP-ETVGK--------LQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKS-IWKVKT 831 (1108)
Q Consensus 763 Lr~L~L~~~~~~~lp-~~i~~--------l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~ 831 (1108)
++++.+..+. +| ..+.. +.+|+.|++.. .+..++. .+..|.+|+.|++..+.+..++.. +..+.+
T Consensus 74 ~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~ 149 (329)
T 3sb4_A 74 GKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVT 149 (329)
T ss_dssp GCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTC
T ss_pred cccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCc
Confidence 3455555442 33 34666 89999999988 7888875 478899999999999988776664 566666
Q ss_pred cCEEEecccccc---ccccCCccccCccccc-ccccccccCCCC-ChhhhccCcCCceeeeeecccchhhHHHHHhhcCC
Q 048834 832 LRHLYMNDIYLQ---MSVQKPFVKYSLTNLQ-TLWSLLIGNKSP-PLNWLESLRGLKKLGLTCHIASLGQIAKWIQDLIS 906 (1108)
Q Consensus 832 L~~L~l~~~~~~---~~~~~~~~l~~l~~L~-~L~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~lp~~l~~l~~ 906 (1108)
+..+........ .... ...+..+.+|+ .+.+........ ....-....++..+.+.+.... .........+++
T Consensus 150 l~~l~~~~~~~~~~~~~i~-~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~ 227 (329)
T 3sb4_A 150 AIFIPLGSSDAYRFKNRWE-HFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPN 227 (329)
T ss_dssp EEEECTTCTHHHHTSTTTT-TSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTT
T ss_pred eEEecCcchhhhhcccccc-ccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCC
Confidence 666655432110 0000 11133344444 221111111000 0011113456777777755332 233322334789
Q ss_pred CcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccc-eee
Q 048834 907 LESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELN-ILR 985 (1108)
Q Consensus 907 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~ 985 (1108)
|+.|++.++....-+. ..+..+ ++|+.|.|..+ +..-....+.++++|+ .+.
T Consensus 228 L~~l~L~~n~i~~I~~----~aF~~~----------------------~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 228 LVSLDISKTNATTIPD----FTFAQK----------------------KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp CCEEECTTBCCCEECT----TTTTTC----------------------TTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred CeEEECCCCCcceecH----hhhhCC----------------------CCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 9999998765433221 122233 35555555544 2222233466777777 777
Q ss_pred eccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCCcccccceEe
Q 048834 986 LFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMPELRELE 1034 (1108)
Q Consensus 986 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~ 1034 (1108)
+.+ .+.. .-...+..+++|+.|.+..+. +..++. .+.++++|+.|.
T Consensus 281 l~~-~l~~-I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 281 LPA-SVTA-IEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECT-TCCE-ECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred Ecc-cceE-EchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 765 3322 223456677788888876554 556654 456677777765
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.60 E-value=7.5e-08 Score=94.23 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=75.1
Q ss_pred CeeEEEEeCCCCCCCC-chhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCccCChh-hccccccCEEEe
Q 048834 761 RLLRVLDLEGVYKPVL-PETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYM 837 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l 837 (1108)
++|++|+|++|.+..+ |..+..+.+|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|.. +.++++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4599999999999988 56799999999999999999999876 57999999999999999988875 889999999999
Q ss_pred cccccc
Q 048834 838 NDIYLQ 843 (1108)
Q Consensus 838 ~~~~~~ 843 (1108)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 998664
No 151
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.56 E-value=2.1e-08 Score=113.56 Aligned_cols=166 Identities=12% Similarity=0.045 Sum_probs=100.1
Q ss_pred hhhhhhHHHhhhc--CCCCCceEeEEccCCCChhhHHHHhcCCcccccC------C--cceeEEEcCCCC-CHHHHHHHH
Q 048834 170 NDEVKGLAELILS--DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNH------F--QCRAWFLVPPRL-DKRELAINI 238 (1108)
Q Consensus 170 ~~~~~~~~~~l~~--~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~------F--~~~~~~~~s~~~-~~~~l~~~i 238 (1108)
+.+.+.+..++.. .....+.|-|+|++|+||||||+.+++. .... + ...+|+..+... +...+..++
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l 103 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE--IEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSL 103 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH--HHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHH
Confidence 3555666655543 2334567999999999999999999953 3222 2 234566665555 788888888
Q ss_pred HHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCCChhh---HhH-hhhhCCCCCCCcEEEEEecchhhhhhccc
Q 048834 239 LNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVRTPDI---WEI-IKFLFPNSLSGSRVILSFREADAAMHRNL 314 (1108)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~~---~~~-l~~~~~~~~~GSrIiiTTR~~~Va~~~~~ 314 (1108)
+.++.+................+.+.+..++.+|||||++.... .+. +...+.+. .+.+||+||+..........
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~ 182 (384)
T 2qby_B 104 AGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEP 182 (384)
T ss_dssp HHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCH
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCH
Confidence 88873221111111122344556677777666999999986432 233 22222222 77899999987643221110
Q ss_pred ---cccccccchhHHhhhccccccccc
Q 048834 315 ---NFFGGDLNLSFKEMKARYPLHEAV 338 (1108)
Q Consensus 315 ---~~~~~~~~~~~l~~~~~~~Lf~~~ 338 (1108)
..+...+.+.+++.++...++...
T Consensus 183 ~l~sr~~~~i~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 183 RVLSSLGPSVIFKPYDAEQLKFILSKY 209 (384)
T ss_dssp HHHHTCCCEEEECCCCHHHHHHHHHHH
T ss_pred HHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 011236677777777777777655
No 152
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.41 E-value=7.7e-08 Score=107.36 Aligned_cols=156 Identities=10% Similarity=0.106 Sum_probs=91.3
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC------CCHHHHHHHHHHHhC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR------LDKRELAINILNQFA 243 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~------~~~~~l~~~i~~~~~ 243 (1108)
+.+.+.+.+++..+ +++.|+|++|+|||||++.+.+. . . .+|+..... .+...+.+.+...+.
T Consensus 18 ~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 86 (350)
T 2qen_A 18 EEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHITREELIKELQSTIS 86 (350)
T ss_dssp HHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCCHHHHHHHHHHHHH
Confidence 46677777777653 68999999999999999999853 2 1 566665432 255666666666543
Q ss_pred CC--------------ch--hHHHHhhcchHHHHHHHccC-CeEEEEEcCCCChh--------h-HhHhhhhCCCCCCCc
Q 048834 244 PT--------------DV--ELEEKLLESPQTVVHNYLIH-KRYLVILTDVRTPD--------I-WEIIKFLFPNSLSGS 297 (1108)
Q Consensus 244 ~~--------------~~--~~~~~~~~~l~~~l~~~l~~-kr~LlVLDDVw~~~--------~-~~~l~~~~~~~~~GS 297 (1108)
.. .. .....+...+...+.+.... ++++|||||++... + +..+...... .++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~ 165 (350)
T 2qen_A 87 PFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNL 165 (350)
T ss_dssp SHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTE
T ss_pred HHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCe
Confidence 20 00 00011122333444444432 38999999998633 2 3444332221 2578
Q ss_pred EEEEEecchhhhhhc----ccc-----ccccccchhHHhhhcccccccc
Q 048834 298 RVILSFREADAAMHR----NLN-----FFGGDLNLSFKEMKARYPLHEA 337 (1108)
Q Consensus 298 rIiiTTR~~~Va~~~----~~~-----~~~~~~~~~~l~~~~~~~Lf~~ 337 (1108)
++|+|++...+.... ... .....+.+.+++.++...++..
T Consensus 166 ~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~ 214 (350)
T 2qen_A 166 KIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKR 214 (350)
T ss_dssp EEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHH
Confidence 999999876542211 100 0123567778888777776643
No 153
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.41 E-value=2.1e-07 Score=105.45 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=96.2
Q ss_pred hhhhhhHHHhhhcC--CCCCceEeEEccCCCChhhHHHHhcCCcccccCC-----c-ceeEEEcCCCCCHHHHHHHHHHH
Q 048834 170 NDEVKGLAELILSD--YPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF-----Q-CRAWFLVPPRLDKRELAINILNQ 241 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F-----~-~~~~~~~s~~~~~~~l~~~i~~~ 241 (1108)
+.+.+.+..++... ......+.|+|++|+||||+|+.+++. ....+ . ..+|+......+...+...++.+
T Consensus 25 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 102 (387)
T 2v1u_A 25 EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVNARHRETPYRVASAIAEA 102 (387)
T ss_dssp HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHH
Confidence 46677777777442 345567999999999999999999953 32221 2 34567777777888999999998
Q ss_pred hCCCchhHHHHhhcchHHHHHHHc--cCCeEEEEEcCCCChh----hHhHhhhhCC---CC--CCCcEEEEEecchhhhh
Q 048834 242 FAPTDVELEEKLLESPQTVVHNYL--IHKRYLVILTDVRTPD----IWEIIKFLFP---NS--LSGSRVILSFREADAAM 310 (1108)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVLDDVw~~~----~~~~l~~~~~---~~--~~GSrIiiTTR~~~Va~ 310 (1108)
+........ .........+.+.+ .+++.+|||||++... ..+.+...+. .. ..+..+|.||+..+...
T Consensus 103 l~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~ 181 (387)
T 2v1u_A 103 VGVRVPFTG-LSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVE 181 (387)
T ss_dssp HSCCCCSSC-CCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSS
T ss_pred hCCCCCCCC-CCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHh
Confidence 865321100 01122334455555 4568999999998643 2233332221 11 44668888887664321
Q ss_pred hccc---cccc-cccchhHHhhhccccccccc
Q 048834 311 HRNL---NFFG-GDLNLSFKEMKARYPLHEAV 338 (1108)
Q Consensus 311 ~~~~---~~~~-~~~~~~~l~~~~~~~Lf~~~ 338 (1108)
.... .... ..+.+.+++.++...++...
T Consensus 182 ~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~ 213 (387)
T 2v1u_A 182 NLEPRVKSSLGEVELVFPPYTAPQLRDILETR 213 (387)
T ss_dssp SSCHHHHTTTTSEECCBCCCCHHHHHHHHHHH
T ss_pred hhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 1100 0011 24556666666666655543
No 154
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.36 E-value=3.9e-07 Score=101.92 Aligned_cols=155 Identities=6% Similarity=0.050 Sum_probs=85.3
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCC-----CCHHHHHHHHHHHhCC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPR-----LDKRELAINILNQFAP 244 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~-----~~~~~l~~~i~~~~~~ 244 (1108)
+.+.+.+.. +.. +++.|+|++|+|||||++.+.+. ... ..+|+..... .+...+...+.+.+..
T Consensus 19 ~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 87 (357)
T 2fna_A 19 EKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYKDFLLELQKEINK 87 (357)
T ss_dssp HHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHH
Confidence 366677777 543 68999999999999999999854 322 2467776532 3445554444433310
Q ss_pred -------------Cc---------hhH-----HHHhhcchHHHHHHHccCCeEEEEEcCCCChh-----hH-hHhhhhCC
Q 048834 245 -------------TD---------VEL-----EEKLLESPQTVVHNYLIHKRYLVILTDVRTPD-----IW-EIIKFLFP 291 (1108)
Q Consensus 245 -------------~~---------~~~-----~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~-----~~-~~l~~~~~ 291 (1108)
.. ... .......+...+.+.-. ++++|||||+...+ +| ..+.....
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~ 166 (357)
T 2fna_A 88 LVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYD 166 (357)
T ss_dssp HHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHH
T ss_pred HhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHH
Confidence 00 000 00011222223333222 48999999997632 23 33322221
Q ss_pred CCCCCcEEEEEecchhhhhhc----c----cc-ccccccchhHHhhhcccccccc
Q 048834 292 NSLSGSRVILSFREADAAMHR----N----LN-FFGGDLNLSFKEMKARYPLHEA 337 (1108)
Q Consensus 292 ~~~~GSrIiiTTR~~~Va~~~----~----~~-~~~~~~~~~~l~~~~~~~Lf~~ 337 (1108)
..++.++|+|+|...+.... . .. .....+.+.+++.++...++..
T Consensus 167 -~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~ 220 (357)
T 2fna_A 167 -NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRR 220 (357)
T ss_dssp -HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHH
T ss_pred -cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHH
Confidence 12478999999976542211 0 00 0124567778888877777654
No 155
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.28 E-value=9.8e-07 Score=92.70 Aligned_cols=160 Identities=8% Similarity=-0.037 Sum_probs=82.4
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCch--
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDV-- 247 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~-- 247 (1108)
+...+.+..++..+. ...++.|+|.+|+||||||+.+++. ....+....+.+ ..... ...+.........
T Consensus 29 ~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 29 EHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG--LNCETGITATPC----GVCDN-CREIEQGRFVDLIEI 100 (250)
T ss_dssp HHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHH--HHCTTCSCSSCC----SCSHH-HHHHHTTCCSSEEEE
T ss_pred HHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH--hcCCCCCCCCCC----cccHH-HHHHhccCCcceEEe
Confidence 355666666665533 2347899999999999999999843 322221100000 00000 0001100000000
Q ss_pred -hHHHHhhcchHHHHHHH----ccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecchhhhh-hcccccccc
Q 048834 248 -ELEEKLLESPQTVVHNY----LIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREADAAM-HRNLNFFGG 319 (1108)
Q Consensus 248 -~~~~~~~~~l~~~l~~~----l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~-~~~~~~~~~ 319 (1108)
.......+.....+... ..+++.+||+||++. ...++.+...+.....+.++|+||+...-.. ..... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r--~~ 178 (250)
T 1njg_A 101 DAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CL 178 (250)
T ss_dssp ETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SE
T ss_pred cCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH--hh
Confidence 00000011111111111 245789999999965 5567777776665567889999987654221 11010 14
Q ss_pred ccchhHHhhhcccccccccc
Q 048834 320 DLNLSFKEMKARYPLHEAVV 339 (1108)
Q Consensus 320 ~~~~~~l~~~~~~~Lf~~~a 339 (1108)
.+.+.+++.++.+.++...+
T Consensus 179 ~i~l~~l~~~e~~~~l~~~~ 198 (250)
T 1njg_A 179 QFHLKALDVEQIRHQLEHIL 198 (250)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHH
Confidence 56677777777777766544
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.26 E-value=6.6e-07 Score=101.28 Aligned_cols=137 Identities=10% Similarity=0.091 Sum_probs=82.5
Q ss_pred hhhhhhHHHhhhcC--CCCCceEeEEccCCCChhhHHHHhcCCcccccCCc---ceeEEEcCCCCCHHHHHHHHHHHhCC
Q 048834 170 NDEVKGLAELILSD--YPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQ---CRAWFLVPPRLDKRELAINILNQFAP 244 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~--~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~---~~~~~~~s~~~~~~~l~~~i~~~~~~ 244 (1108)
+.+.+.+..++... ......+.|+|++|+||||||+.+++. ....|. ..+|+......+...+...++.++..
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~ 103 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDV 103 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46667777776542 344567999999999999999999943 444432 34566655556777888888877753
Q ss_pred CchhHHHHhhcchHHHHHHHcc--CCeEEEEEcCCCCh------hhHhHhhhhCCC-CCCCcEEEEEecchhhh
Q 048834 245 TDVELEEKLLESPQTVVHNYLI--HKRYLVILTDVRTP------DIWEIIKFLFPN-SLSGSRVILSFREADAA 309 (1108)
Q Consensus 245 ~~~~~~~~~~~~l~~~l~~~l~--~kr~LlVLDDVw~~------~~~~~l~~~~~~-~~~GSrIiiTTR~~~Va 309 (1108)
..... ..+.......+.+.+. +++.+|||||++.. +.+..+...... ...+..+|+||++.+..
T Consensus 104 ~~~~~-~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 104 KVPFT-GLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp CCCSS-SCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred CCCCC-CCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 32100 0011222333444443 45899999999763 234444333321 23456778888876543
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.25 E-value=3e-06 Score=95.84 Aligned_cols=137 Identities=11% Similarity=0.013 Sum_probs=86.1
Q ss_pred hhhhhhHHHhhhc----CCCCCceEeEEccCCCChhhHHHHhcCCcccccCC-cceeEEEcCCCCCHHHHHHHHHHHhCC
Q 048834 170 NDEVKGLAELILS----DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF-QCRAWFLVPPRLDKRELAINILNQFAP 244 (1108)
Q Consensus 170 ~~~~~~~~~~l~~----~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F-~~~~~~~~s~~~~~~~l~~~i~~~~~~ 244 (1108)
+.+.+.+..++.. +....+.+.|+|..|+||||||+.+.+. ..... -..+|+..+...+...+...++..+..
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~ 100 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEIARSLNI 100 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCc
Confidence 3556666666654 2333447999999999999999999843 43332 234566667777888999999988754
Q ss_pred CchhHHHHhhcchHHHHHHHc--cCCeEEEEEcCCCC--hhhHhHhhhhCCCCC----CCcEEEEEecchhhh
Q 048834 245 TDVELEEKLLESPQTVVHNYL--IHKRYLVILTDVRT--PDIWEIIKFLFPNSL----SGSRVILSFREADAA 309 (1108)
Q Consensus 245 ~~~~~~~~~~~~l~~~l~~~l--~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~----~GSrIiiTTR~~~Va 309 (1108)
...... .........+.+.+ .+++.+|||||++. ...+..|...+.... .+..||+||++.++.
T Consensus 101 ~~~~~~-~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 101 PFPRRG-LSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp CCCSSC-CCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred cCCCCC-CCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 321000 01122233344444 36688999999986 344666665553322 467888888876543
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.24 E-value=1.2e-06 Score=97.25 Aligned_cols=87 Identities=21% Similarity=0.140 Sum_probs=57.9
Q ss_pred ccCCCeeEEEEeCC-CCCCCCc-hhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCCcCccCChhhccccccC
Q 048834 757 RRGYRLLRVLDLEG-VYKPVLP-ETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHTNITSLPKSIWKVKTLR 833 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~-~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~ 833 (1108)
+..+++|++|+|++ |.+..+| ..|+.|.+|++|+|++|.+..+|. .+.+|++|++|+|++|.|+.+|..+....+|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 34455577777775 6677665 457777777777777777776654 45677777777777777777766554444477
Q ss_pred EEEecccccc
Q 048834 834 HLYMNDIYLQ 843 (1108)
Q Consensus 834 ~L~l~~~~~~ 843 (1108)
.|++.+|.+.
T Consensus 107 ~l~l~~N~~~ 116 (347)
T 2ifg_A 107 ELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCC
T ss_pred EEEeeCCCcc
Confidence 7777766543
No 159
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.24 E-value=6.8e-06 Score=93.76 Aligned_cols=207 Identities=16% Similarity=0.111 Sum_probs=121.2
Q ss_pred CceeeehHHHHHHHHHH-hCC--C--CceEEEEE--EcCCCChHHHHHHHHhcCcccc---ccCc-eeEEEEeccCCCcC
Q 048834 363 AELVGLKDQLLRLAQLT-MSS--S--SKYFLISV--VGVAGSGKTTLVETIYNSSYIR---QNFE-YHAWANVDVSHDFD 431 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l-~~~--~--~~~~~i~i--~G~~g~GKT~la~~~~~~~~~~---~~f~-~~~w~~v~~s~~~~ 431 (1108)
..++||+.+++.+...+ ... + +.+..+.+ +|.+|+|||++++.+++...-. ..+. ...|+. ......
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 99 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN--AFNAPN 99 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE--GGGCCS
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE--CCCCCC
Confidence 56789999999998887 432 2 24556666 9999999999999998762111 0122 234544 555667
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhc--CCceEEEEeCCCCh--------hhHHHHHHHhCCCC-CC--CC
Q 048834 432 LRKVFINILEQVTRVKIAEELALNELESRLIRLFQ--SKRYLIVLDDVHLP--------GAWYELQRIFSPNT-SS--SG 498 (1108)
Q Consensus 432 ~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~--~k~~llvlDdv~~~--------~~~~~l~~~~~~~~-~~--~~ 498 (1108)
...+...++.+++........+...+...+.+.+. ++++++++||++.. ..+..+...+.... .+ ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 77888888888754321111233445555555554 67899999999763 22222222221000 01 23
Q ss_pred CEEEEEcCchHHHHh--------cCCCcceEecCCCChhhhHHHHhhhhcCcCC-chHHHHHHHHHHHHcC------Cch
Q 048834 499 SRVILLTREAFVARA--------FSPSIILLQLRPLNVDESWELFLKKVGREKR-ASELLNLKEKIWKKCG------GLP 563 (1108)
Q Consensus 499 s~iivttr~~~v~~~--------~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~-~~~~~~~~~~i~~~~~------glP 563 (1108)
..++++++...+... .......+.+.+++.+++.+++......... ...-......+...++ |.|
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 446767765543211 1111223899999999999999654321000 0111234556777888 999
Q ss_pred hHHHHHHH
Q 048834 564 LAICVLGG 571 (1108)
Q Consensus 564 lal~~~~~ 571 (1108)
..+..+..
T Consensus 260 ~~~~~l~~ 267 (412)
T 1w5s_A 260 RRAIVALK 267 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555543
No 160
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.22 E-value=1e-05 Score=89.85 Aligned_cols=195 Identities=13% Similarity=0.160 Sum_probs=120.5
Q ss_pred CCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCC------cCHHHH
Q 048834 362 EAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHD------FDLRKV 435 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~------~~~~~l 435 (1108)
...++||+.+++.+.+.+... ..+.|.|..|+|||++++.+.+.. ...|+. .... .....+
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER-------PGILID--CRELYAERGHITREEL 77 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS-------SEEEEE--HHHHHHTTTCBCHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc-------CcEEEE--eecccccccCCCHHHH
Confidence 456799999999999888652 488999999999999999987652 145555 3222 134444
Q ss_pred HHHHHHHHhhh----------------h-hhhhhhHHHHHHHHHHHhcC-CceEEEEeCCCChh---------hHHHHHH
Q 048834 436 FINILEQVTRV----------------K-IAEELALNELESRLIRLFQS-KRYLIVLDDVHLPG---------AWYELQR 488 (1108)
Q Consensus 436 ~~~il~~l~~~----------------~-~~~~~~~~~l~~~l~~~l~~-k~~llvlDdv~~~~---------~~~~l~~ 488 (1108)
...+...+... . .....+...+...+.+.... +++++++||++... .+..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 44444433210 0 00012345555556555542 38999999987632 2333433
Q ss_pred HhCCCCCCCCCEEEEEcCchHH-HHh---------cC-CCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHH
Q 048834 489 IFSPNTSSSGSRVILLTREAFV-ARA---------FS-PSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWK 557 (1108)
Q Consensus 489 ~~~~~~~~~~s~iivttr~~~v-~~~---------~~-~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~ 557 (1108)
... .. .+..+++|++.... ... .. .....+.+.+++.+++.+++...+...... .-......+..
T Consensus 158 ~~~--~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~ 233 (350)
T 2qen_A 158 AYD--SL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVE 233 (350)
T ss_dssp HHH--HC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHH
T ss_pred HHH--hc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 322 11 46778888776543 221 11 112478999999999999987654221111 11234567888
Q ss_pred HcCCchhHHHHHHHHh
Q 048834 558 KCGGLPLAICVLGGLL 573 (1108)
Q Consensus 558 ~~~glPlal~~~~~~l 573 (1108)
.++|.|.++..++..+
T Consensus 234 ~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEY 249 (350)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999999887654
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=3.5e-07 Score=100.73 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=99.3
Q ss_pred hhhccCcCCceeeeeecccc--------hhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccC
Q 048834 874 NWLESLRGLKKLGLTCHIAS--------LGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLP 945 (1108)
Q Consensus 874 ~~l~~l~~L~~L~l~~~~~~--------~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 945 (1108)
..+..+++|+.|.+...... ...+...+..+++|+.|.|+++..... +
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l------------------------~ 188 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI------------------------G 188 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC------------------------C
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee------------------------c
Confidence 34556778888877532110 123556666777788888776522110 0
Q ss_pred CCCCCCCCCCCcceEEEEeccCCCCCccccc--cccccceeeeccc--cccCce-e-----eeCCCCCCcccEEEeccCC
Q 048834 946 EPLKLDKLPPNLRILTLSLSYLSEDPMPVLG--QLKELNILRLFAH--SFMGEE-M-----TCGDGGFPKLRVLKLWVQK 1015 (1108)
Q Consensus 946 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~~--~~~~~~-~-----~~~~~~~~~L~~L~l~~~~ 1015 (1108)
. . . .++|+.|.|..|.+.......+. .+|+|+.|+|+.+ ...+.. + ......||+|++|.+.+|.
T Consensus 189 ~---~-~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 189 K---K-P-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp S---C-B-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred c---c-c-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 0 0 1 25788888877766543333333 6888888888532 111110 0 1112468999999998886
Q ss_pred CCCceeeC---CCcccccceEeecccCCCC-----CCcccCCCCCCCEEEEecCch--HHHHHHHhhc
Q 048834 1016 ELREWTIG---KEAMPELRELEIRCCKKMK-----KPIELEKLSSLKELTLTDMKK--SFEYEVRGSM 1073 (1108)
Q Consensus 1016 ~l~~lp~~---~~~l~~L~~L~i~~c~~l~-----lp~~l~~l~~L~~L~l~~c~~--~~~~~~~~~~ 1073 (1108)
.....+.. ...+|+|+.|+++.|.... ++..+.++++|+.|++++|+- ...+.+..++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 43222111 1358899999998876543 344556778999999998863 3333444433
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.18 E-value=3.3e-06 Score=93.74 Aligned_cols=98 Identities=14% Similarity=0.002 Sum_probs=77.4
Q ss_pred EEEeCCC-CCCCCchhhcCCCCccEEecCC-ccccccc-cccCCCCCCcEEeccCCcCccCCh-hhccccccCEEEeccc
Q 048834 765 VLDLEGV-YKPVLPETVGKLQLLRYFGLRW-TFLDSIP-ESVGDLPCLETLDLKHTNITSLPK-SIWKVKTLRHLYMNDI 840 (1108)
Q Consensus 765 ~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~-~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~l~~~ 840 (1108)
.+++++. .+..+|. +..+.+|++|+|++ |.+..+| ..+..|.+|++|+|++|.|+.+|+ .+++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688887 8999999 99999999999996 8999888 568999999999999999997765 5799999999999999
Q ss_pred cccccccCCccccCcccccccccccc
Q 048834 841 YLQMSVQKPFVKYSLTNLQTLWSLLI 866 (1108)
Q Consensus 841 ~~~~~~~~~~~l~~l~~L~~L~~~~~ 866 (1108)
.+.... +..+..+. |+.|++..+
T Consensus 91 ~l~~~~--~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLS--WKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCSCCC--STTTCSCC-CCEEECCSS
T ss_pred ccceeC--HHHcccCC-ceEEEeeCC
Confidence 775321 22233333 666655443
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=2.9e-07 Score=102.43 Aligned_cols=135 Identities=19% Similarity=0.098 Sum_probs=66.7
Q ss_pred CeeEEEEeCCCCCCCC--chhhcCCCCccEEecCCcccccc-----cccc-CCCCCCcEEeccCCcCc-----cCChhhc
Q 048834 761 RLLRVLDLEGVYKPVL--PETVGKLQLLRYFGLRWTFLDSI-----PESV-GDLPCLETLDLKHTNIT-----SLPKSIW 827 (1108)
Q Consensus 761 ~~Lr~L~L~~~~~~~l--p~~i~~l~~L~~L~l~~~~i~~l-----p~~i-~~l~~L~~L~L~~~~l~-----~lp~~i~ 827 (1108)
++|++|+|++|.+... ......+.+|++|+|++|.+... ...+ ....+|++|+|++|.++ .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555554321 11112234555555555544321 1111 23445555555555443 1333344
Q ss_pred cccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccch---hhHHHHHhhc
Q 048834 828 KVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASL---GQIAKWIQDL 904 (1108)
Q Consensus 828 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~lp~~l~~l 904 (1108)
.+++|++|++++|.+.... ...+...+...++|+.|++++|.... ..++..+...
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g----------------------~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~ 238 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEG----------------------LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238 (372)
T ss_dssp TCSSCCEEECTTSSCHHHH----------------------HHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHC
T ss_pred cCCCcCEEeCCCCCCCcHH----------------------HHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhC
Confidence 4555555555555432110 00123445556677777777765532 2455556667
Q ss_pred CCCcEEEEEecCC
Q 048834 905 ISLESLRLRSLND 917 (1108)
Q Consensus 905 ~~L~~L~l~~~~~ 917 (1108)
++|++|+|++|..
T Consensus 239 ~~L~~L~Ls~N~i 251 (372)
T 3un9_A 239 PSLELLHLYFNEL 251 (372)
T ss_dssp SSCCEEECTTSSC
T ss_pred CCCCEEeccCCCC
Confidence 7888888877654
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.14 E-value=5.4e-05 Score=84.93 Aligned_cols=109 Identities=10% Similarity=-0.009 Sum_probs=69.5
Q ss_pred CCcceEEEEeccCC-----CCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCCccc
Q 048834 955 PNLRILTLSLSYLS-----EDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMP 1028 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~ 1028 (1108)
++|+.+.+.++... .-....+.+|++|+.+.|.++ +. ..-...+..+++|+.+.|... +..++. .+.++
T Consensus 271 ~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~- 345 (401)
T 4fdw_A 271 PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT- 345 (401)
T ss_dssp TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-
T ss_pred CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-
Confidence 45666666554332 112335678899999999742 32 222345667889999999543 666654 45677
Q ss_pred ccceEeecccCCCCCC-cccCCC-CCCCEEEEecCchHHHHHHHh
Q 048834 1029 ELRELEIRCCKKMKKP-IELEKL-SSLKELTLTDMKKSFEYEVRG 1071 (1108)
Q Consensus 1029 ~L~~L~i~~c~~l~lp-~~l~~l-~~L~~L~l~~c~~~~~~~~~~ 1071 (1108)
+|+.|.+.++....++ ..+..+ .+++.|.+ |....+..++
T Consensus 346 ~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v---p~~~~~~y~~ 387 (401)
T 4fdw_A 346 GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV---PAESVEKYKN 387 (401)
T ss_dssp CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE---CGGGHHHHHH
T ss_pred CCCEEEEcCCCCcccccccccCCCCCccEEEe---CHHHHHHhhh
Confidence 9999999998766643 334555 37888988 5555555443
No 165
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.11 E-value=9.5e-06 Score=83.55 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=68.0
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEE--EcCCCCCHHHHHHHHHHHhCCCch
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWF--LVPPRLDKRELAINILNQFAPTDV 247 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~--~~s~~~~~~~l~~~i~~~~~~~~~ 247 (1108)
+...+.+..++..+.. ..+-|+|.+|+||||+|+.+.+ ..........|+ ..+...+...+...+.......
T Consensus 23 ~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (226)
T 2chg_A 23 DEVIQRLKGYVERKNI--PHLLFSGPPGTGKTATAIALAR--DLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA-- 96 (226)
T ss_dssp HHHHHHHHHHHHTTCC--CCEEEECSTTSSHHHHHHHHHH--HHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC--
T ss_pred HHHHHHHHHHHhCCCC--CeEEEECCCCCCHHHHHHHHHH--HHhccccccceEEeccccccChHHHHHHHHHHhccc--
Confidence 3556677777765432 3389999999999999999984 332222222333 3333333332222111111000
Q ss_pred hHHHHhhcchHHHHHHHccCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 248 ELEEKLLESPQTVVHNYLIHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 248 ~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
..-.+++.+||+||++.. ..++.+...+.....+.++|+||+..
T Consensus 97 ---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 97 ---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp ---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 011357889999999863 44566666555556678999998754
No 166
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=2.3e-06 Score=94.23 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=84.9
Q ss_pred CCCeeEEEEeCCCCC----------CCCchhhcCCCCccEEecCCccccccccccCCCCCCcEEeccCCcCc-cCChhhc
Q 048834 759 GYRLLRVLDLEGVYK----------PVLPETVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKHTNIT-SLPKSIW 827 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~----------~~lp~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~~~l~-~lp~~i~ 827 (1108)
.+++|+.|.+.+... ..++..+..+++|+.|+++++.-..+|. + .+++|++|+|..|.+. .....+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 455688888865321 2356667888999999998873234555 4 3889999999988765 2222343
Q ss_pred --cccccCEEEecccc--ccccc---cCCccc--cCcccccccccccccCCCCChhhh---ccCcCCceeeeeecccch-
Q 048834 828 --KVKTLRHLYMNDIY--LQMSV---QKPFVK--YSLTNLQTLWSLLIGNKSPPLNWL---ESLRGLKKLGLTCHIASL- 894 (1108)
Q Consensus 828 --~l~~L~~L~l~~~~--~~~~~---~~~~~l--~~l~~L~~L~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~- 894 (1108)
.+++|++|+++.+. ..... .....+ ..+++|+.|++..|.........+ ..+++|+.|+++.+....
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 78999999985321 11110 000011 235566666555443321111111 234566666666544321
Q ss_pred --hhHHHHHhhcCCCcEEEEEec
Q 048834 895 --GQIAKWIQDLISLESLRLRSL 915 (1108)
Q Consensus 895 --~~lp~~l~~l~~L~~L~l~~~ 915 (1108)
..++..+..+++|+.|+++.|
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHhhcccCCcceEEECCCC
Confidence 123333345566666666554
No 167
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.10 E-value=4.4e-05 Score=85.72 Aligned_cols=239 Identities=11% Similarity=0.040 Sum_probs=123.7
Q ss_pred eeEEEEeCCCCCCCCch-hhcCCCCccEEecCCccccccc-cccCCCCCCcEEeccCCcCccCChhhccccccCEEEecc
Q 048834 762 LLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIP-ESVGDLPCLETLDLKHTNITSLPKSIWKVKTLRHLYMND 839 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~l~~ 839 (1108)
+|+.+.+..+ +..++. .+.+ .+|+.+.+.. .+..++ ..+.++.+|+.+++..++++.+|......++|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 4777777765 555543 3444 3688888875 566665 456778888888888888888887755578888888764
Q ss_pred ccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeecccchhhH-HHHHhhcCCCcEEEEEecCCC
Q 048834 840 IYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIASLGQI-AKWIQDLISLESLRLRSLNDF 918 (1108)
Q Consensus 840 ~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~l-p~~l~~l~~L~~L~l~~~~~~ 918 (1108)
+ ...+. ...+.++.+|+.+.+...- ..--...+.. .+|+.+.+..+-. .+ ...+..+++|+.+.+.++...
T Consensus 213 ~--l~~I~-~~aF~~~~~L~~l~l~~~l-~~I~~~aF~~-~~L~~i~lp~~i~---~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 213 T--LKEIG-SQAFLKTSQLKTIEIPENV-STIGQEAFRE-SGITTVKLPNGVT---NIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp T--CCEEC-TTTTTTCTTCCCEECCTTC-CEECTTTTTT-CCCSEEEEETTCC---EECTTTTTTCTTCCEEEEESSCCC
T ss_pred c--hheeh-hhHhhCCCCCCEEecCCCc-cCcccccccc-CCccEEEeCCCcc---EEChhHhhCCCCCCEEEeCCcccc
Confidence 3 11222 2235666777766554310 0001112222 4566666643211 11 123445566666666554322
Q ss_pred CCC-CccccCCCCCccCccceEeecccCCCCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceee
Q 048834 919 GEP-SDLVIGPLNNHRALNELYLLGKLPEPLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMT 997 (1108)
Q Consensus 919 ~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 997 (1108)
... ..+....+..+ ++|+.+.|.+ .+..-....+.++++|+.+.|..+ +. ..-.
T Consensus 285 ~~~~~~I~~~aF~~c----------------------~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~ 339 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGC----------------------PKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINF 339 (401)
T ss_dssp CCTTCEECTTTTTTC----------------------TTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECT
T ss_pred CCcccEECHHHhhCC----------------------ccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcH
Confidence 110 00111122222 4555555542 122112234556777777777443 21 1122
Q ss_pred eCCCCCCcccEEEeccCCCCCcee-eCCCccc-ccceEeeccc
Q 048834 998 CGDGGFPKLRVLKLWVQKELREWT-IGKEAMP-ELRELEIRCC 1038 (1108)
Q Consensus 998 ~~~~~~~~L~~L~l~~~~~l~~lp-~~~~~l~-~L~~L~i~~c 1038 (1108)
..+..+ +|+.+.+.++. +..++ ..+..++ +++.|.+-..
T Consensus 340 ~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp TSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEECGG
T ss_pred HhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeCHH
Confidence 334555 77777777664 22332 2233343 5666666543
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=9.7e-07 Score=98.19 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=65.7
Q ss_pred eeEEEEeCCCCCCCCc-----hhh-cCCCCccEEecCCccccc-----cccccCCCCCCcEEeccCCcCc-----cCChh
Q 048834 762 LLRVLDLEGVYKPVLP-----ETV-GKLQLLRYFGLRWTFLDS-----IPESVGDLPCLETLDLKHTNIT-----SLPKS 825 (1108)
Q Consensus 762 ~Lr~L~L~~~~~~~lp-----~~i-~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~L~~~~l~-----~lp~~ 825 (1108)
+|++|+|++|.+.... ..+ ....+|++|+|++|.+.. ++..+..+++|++|+|++|.+. .++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 4999999999886532 222 356899999999998763 6666788999999999999876 34566
Q ss_pred hccccccCEEEecccccc
Q 048834 826 IWKVKTLRHLYMNDIYLQ 843 (1108)
Q Consensus 826 i~~l~~L~~L~l~~~~~~ 843 (1108)
+...++|++|++++|.+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp GGGCSCCCEEECCSSCCC
T ss_pred HhcCCCcCeEECCCCCCC
Confidence 778889999999998764
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.98 E-value=5.6e-05 Score=84.14 Aligned_cols=192 Identities=14% Similarity=0.256 Sum_probs=116.0
Q ss_pred CCceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCC-----cCHHHHH
Q 048834 362 EAELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHD-----FDLRKVF 436 (1108)
Q Consensus 362 ~~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~-----~~~~~l~ 436 (1108)
...++||+.+++.+.+ +.. ..+.|.|..|+|||++++.+.... .. ...|+. .... .+.....
T Consensus 12 ~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~--~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLD--LRKFEERNYISYKDFL 78 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEE--GGGGTTCSCCCHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEE--chhhccccCCCHHHHH
Confidence 3467899999999998 654 389999999999999999887652 21 245666 3321 2333444
Q ss_pred HHHHHHHhhh-----------------h-----hh------hhhhHHHHHHHHHHHhcCCceEEEEeCCCCh------hh
Q 048834 437 INILEQVTRV-----------------K-----IA------EELALNELESRLIRLFQSKRYLIVLDDVHLP------GA 482 (1108)
Q Consensus 437 ~~il~~l~~~-----------------~-----~~------~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~------~~ 482 (1108)
..+...+... . .. .......+...+.+.-. +++++++||++.. ..
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~ 157 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNL 157 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhH
Confidence 4443333210 0 00 01234444444444322 4899999998652 22
Q ss_pred HHHHHHHhCCCCCCCCCEEEEEcCchHHHHhc----------CCC-cceEecCCCChhhhHHHHhhhhcC-cCCchHHHH
Q 048834 483 WYELQRIFSPNTSSSGSRVILLTREAFVARAF----------SPS-IILLQLRPLNVDESWELFLKKVGR-EKRASELLN 550 (1108)
Q Consensus 483 ~~~l~~~~~~~~~~~~s~iivttr~~~v~~~~----------~~~-~~~~~~~~L~~~~~~~lf~~~~~~-~~~~~~~~~ 550 (1108)
+..+..... . ..+..+++|++........ ... ...+.+.+++.+++.+++...+.. .......
T Consensus 158 ~~~l~~~~~--~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-- 232 (357)
T 2fna_A 158 LPALAYAYD--N-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-- 232 (357)
T ss_dssp HHHHHHHHH--H-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--
T ss_pred HHHHHHHHH--c-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--
Confidence 233333222 1 1367888888876532211 111 257889999999999998765421 1111111
Q ss_pred HHHHHHHHcCCchhHHHHHHHHhh
Q 048834 551 LKEKIWKKCGGLPLAICVLGGLLS 574 (1108)
Q Consensus 551 ~~~~i~~~~~glPlal~~~~~~l~ 574 (1108)
..+...++|.|+.+..++..+.
T Consensus 233 --~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 233 --EVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp --HHHHHHHCSCHHHHHHHHHHHH
T ss_pred --HHHHHHhCCCHHHHHHHHHHHc
Confidence 6788899999999999887654
No 170
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.88 E-value=0.00018 Score=80.94 Aligned_cols=172 Identities=17% Similarity=0.149 Sum_probs=108.6
Q ss_pred CceeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCcccc----cc--CceeEEEEeccCCCc-CHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIR----QN--FEYHAWANVDVSHDF-DLR 433 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~----~~--f~~~~w~~v~~s~~~-~~~ 433 (1108)
..++|++..++.+...+... .+.+..+.++|.+|+|||++|+.+++...-. .. .....|++ ..... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN--CREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE--HHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE--CccCCCCHH
Confidence 56789999999988877652 4556789999999999999999998762111 01 12334444 54444 666
Q ss_pred HHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHHhcCCceEEEEeCCCChhh---HHH-HHHHhCCCCCCCCCEEEEEcCch
Q 048834 434 KVFINILEQVTRVKIA-EELALNELESRLIRLFQSKRYLIVLDDVHLPGA---WYE-LQRIFSPNTSSSGSRVILLTREA 508 (1108)
Q Consensus 434 ~l~~~il~~l~~~~~~-~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~~---~~~-l~~~~~~~~~~~~s~iivttr~~ 508 (1108)
.+...++.++.+.... ...+...+...+...+..++.++++||++.... .+. +...+. .. .+..++.+++..
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~--~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR--SD-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT--SS-SCEEEEEECSST
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc--CC-cceEEEEEECCC
Confidence 7777777776332111 112234555666677777666999999976321 233 333332 22 567788888764
Q ss_pred HH----HHhc-CCCcceEecCCCChhhhHHHHhhhh
Q 048834 509 FV----ARAF-SPSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 509 ~v----~~~~-~~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
.. .... ......+.+.+++.++..+++...+
T Consensus 175 ~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 175 NVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp TTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 21 1111 1112388999999999999997754
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.86 E-value=5.5e-05 Score=85.29 Aligned_cols=172 Identities=24% Similarity=0.326 Sum_probs=102.0
Q ss_pred CceeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCccccccC---ceeEEEEeccCCCcCHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNF---EYHAWANVDVSHDFDLRKVFI 437 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f---~~~~w~~v~~s~~~~~~~l~~ 437 (1108)
..++|++..++.+.+.+... .+.+..+.++|.+|+|||++++.++.. +...+ ....|+. .........+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~--~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYIN--TRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEE--HHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEE--CCCCCCHHHHHH
Confidence 56789999999999888753 445668899999999999999998875 33322 1234444 444445555555
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHhc--CCceEEEEeCCCC------hhhHHHHHHHhCCCCCCCCCEEEEEcCchH
Q 048834 438 NILEQVTRVKIAEELALNELESRLIRLFQ--SKRYLIVLDDVHL------PGAWYELQRIFSPNTSSSGSRVILLTREAF 509 (1108)
Q Consensus 438 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~--~k~~llvlDdv~~------~~~~~~l~~~~~~~~~~~~s~iivttr~~~ 509 (1108)
.++..++........+...+...+.+.+. +++.++++||++. ...+..+...+. .....+..++++++...
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~-~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS-EVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH-SCCC--EEEEEEESCGG
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchh-hcCCCeEEEEEEECCCC
Confidence 55554432111111223444444444443 4589999999864 223333433331 00123456677776543
Q ss_pred HHHhcC------CCcceEecCCCChhhhHHHHhhhh
Q 048834 510 VARAFS------PSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 510 v~~~~~------~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
...... -....+.+.+++.++..+++...+
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 222111 112478999999999999987643
No 172
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=3.8e-06 Score=80.49 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=36.0
Q ss_pred CCCCcccEEEeccCCCCCceee-CCCc----ccccceEeecccCCCC--CCcccCCCCCCCEEEEecCch
Q 048834 1001 GGFPKLRVLKLWVQKELREWTI-GKEA----MPELRELEIRCCKKMK--KPIELEKLSSLKELTLTDMKK 1063 (1108)
Q Consensus 1001 ~~~~~L~~L~l~~~~~l~~lp~-~~~~----l~~L~~L~i~~c~~l~--lp~~l~~l~~L~~L~l~~c~~ 1063 (1108)
..+++|++|+|++|..+++-.. .+.. .++|++|++++|+.++ -...+.++++|++|++++|+.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 3455556666666655443211 1111 3467777777777665 223455677788888888875
No 173
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.83 E-value=0.00015 Score=81.65 Aligned_cols=173 Identities=19% Similarity=0.201 Sum_probs=107.4
Q ss_pred CceeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCcccccc------CceeEEEEeccCCCcCHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQN------FEYHAWANVDVSHDFDLRK 434 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~------f~~~~w~~v~~s~~~~~~~ 434 (1108)
..++|++..++.+...+... .+.+..+.++|.+|+|||++++.+++. .... -....|++ .....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~--~~~~~~~~~~~~~~~~i~--~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRR--LEARASSLGVLVKPIYVN--ARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHH--HHHHHHHHTCCEEEEEEE--TTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH--HHHHHhccCCCeEEEEEE--CCcCCCHHH
Confidence 56789999999999988543 455678899999999999999999875 2211 11234444 666677778
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHHHHHh--cCCceEEEEeCCCChh----hHHHHHHHhCC--CCC-CCCCEEEEEc
Q 048834 435 VFINILEQVTRVKIAEELALNELESRLIRLF--QSKRYLIVLDDVHLPG----AWYELQRIFSP--NTS-SSGSRVILLT 505 (1108)
Q Consensus 435 l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l--~~k~~llvlDdv~~~~----~~~~l~~~~~~--~~~-~~~s~iivtt 505 (1108)
+...++.+++........+...+...+.+.+ .+++.++++||++... ..+.+...+.. ... ..+..++.++
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 8888888775422211223445555555555 3457899999998633 22333333220 111 2455677777
Q ss_pred CchHH----HHhcCCC--cceEecCCCChhhhHHHHhhhh
Q 048834 506 REAFV----ARAFSPS--IILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 506 r~~~v----~~~~~~~--~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
+.... ....... ...+.+.+++.++..+++...+
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 65421 1111111 2478899999999999987654
No 174
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.76 E-value=0.00034 Score=78.75 Aligned_cols=172 Identities=16% Similarity=0.242 Sum_probs=107.7
Q ss_pred CceeeehHHHHHHHHHHhCC----CCceEEEEEEcCCCChHHHHHHHHhcCccccccC-ceeEEEEeccCCCcCHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS----SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNF-EYHAWANVDVSHDFDLRKVFI 437 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~----~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f-~~~~w~~v~~s~~~~~~~l~~ 437 (1108)
..++|++..++.+...+... .+.++.+.++|..|+|||++++.++.. ..... ....+++ .+...+...+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~--~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYIN--GFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEE--TTTCCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEe--CccCCCHHHHHH
Confidence 55789999999988888652 223348899999999999999998765 22221 1234444 666667777788
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHhc--CCceEEEEeCCCC--hhhHHHHHHHhCCCCCC---CCCEEEEEcCchHH
Q 048834 438 NILEQVTRVKIAEELALNELESRLIRLFQ--SKRYLIVLDDVHL--PGAWYELQRIFSPNTSS---SGSRVILLTREAFV 510 (1108)
Q Consensus 438 ~il~~l~~~~~~~~~~~~~l~~~l~~~l~--~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~---~~s~iivttr~~~v 510 (1108)
.++..++........+...+...+...+. +++.++++||++. ......+...+. .... .+..++++++....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~-~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQ-EADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTT-CHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHH-hCCCCCcCCEEEEEEECCchH
Confidence 88777653221111233444444444443 5688999999875 344455544442 1111 35667777766543
Q ss_pred HHhcCC------CcceEecCCCChhhhHHHHhhhh
Q 048834 511 ARAFSP------SIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 511 ~~~~~~------~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
...... ....+.+.+++.++..+++...+
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 332211 12368899999999998887654
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=9e-06 Score=77.89 Aligned_cols=87 Identities=9% Similarity=0.066 Sum_probs=67.8
Q ss_pred CcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCC----CCcccEEEeccCCCCCcee-eCCCccccc
Q 048834 956 NLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGG----FPKLRVLKLWVQKELREWT-IGKEAMPEL 1030 (1108)
Q Consensus 956 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~lp-~~~~~l~~L 1030 (1108)
+|+.|++++|.++..-...+.++++|+.|+|++|...+..-...+.. .++|++|+|++|+.+++-. ..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 79999999999887767778899999999999997443221122333 3589999999999887621 234578999
Q ss_pred ceEeecccCCCC
Q 048834 1031 RELEIRCCKKMK 1042 (1108)
Q Consensus 1031 ~~L~i~~c~~l~ 1042 (1108)
+.|++++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 999999999887
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=2.7e-05 Score=85.30 Aligned_cols=116 Identities=11% Similarity=0.128 Sum_probs=66.3
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccccc-CCcc-eeEEEcCCCCCHHHHHHHHHHHhCCCch
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKN-HFQC-RAWFLVPPRLDKRELAINILNQFAPTDV 247 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~-~F~~-~~~~~~s~~~~~~~l~~~i~~~~~~~~~ 247 (1108)
+...+.+..++..+.. ..+-|+|++|+||||+|+.+.+. +.. .+.. .+++..+...+...+ ++++..+...
T Consensus 27 ~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~-- 99 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNM--PHMIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQK-- 99 (323)
T ss_dssp THHHHHHHHHHHSCCC--CCEEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHB--
T ss_pred HHHHHHHHHHHHcCCC--CeEEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHHH-HHHHHHHHhc--
Confidence 3556667777765433 33889999999999999999843 322 2221 223333332232221 1122111100
Q ss_pred hHHHHhhcchHHHHHHHc-cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 248 ELEEKLLESPQTVVHNYL-IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 248 ~~~~~~~~~l~~~l~~~l-~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
...+ .+++.+||+||++. ...++.|...+.....++++|+||+..
T Consensus 100 --------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 100 --------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp --------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred --------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 0012 45688999999986 445666666555455678899888653
No 177
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.73 E-value=4.4e-05 Score=79.81 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=108.5
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHH-
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILE- 441 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~- 441 (1108)
.+++|++..++.+...+.... .+..+.++|.+|+|||++++.++... ...+....+ ....... ...+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~--~~~~~~~~~------~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL--NCETGITAT------PCGVCDN-CREIEQG 92 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHH--HCTTCSCSS------CCSCSHH-HHHHHTT
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh--cCCCCCCCC------CCcccHH-HHHHhcc
Confidence 346899999999988886542 34578899999999999999987652 111100000 0000000 000000
Q ss_pred ---HHhhhhhhhhhhHHHHHHHHHHH----hcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCchH-HH
Q 048834 442 ---QVTRVKIAEELALNELESRLIRL----FQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREAF-VA 511 (1108)
Q Consensus 442 ---~l~~~~~~~~~~~~~l~~~l~~~----l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~~-v~ 511 (1108)
.+.............+...+... ..+++.++++||++. ...++.+...+. ....+..++++++... +.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~--~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE--EPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH--SCCTTEEEEEEESCGGGSC
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh--cCCCceEEEEEeCChHhCC
Confidence 00000000001111111111111 134678999999864 556666666554 2224667777776543 22
Q ss_pred HhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHh
Q 048834 512 RAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLL 573 (1108)
Q Consensus 512 ~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l 573 (1108)
.........+.+.+++.++..+++...+...... .-.+....+++.++|.|..+..+....
T Consensus 171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2222334688999999999999987665322111 112345567888999998877665443
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.65 E-value=0.00046 Score=70.62 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=102.6
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQV 443 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l 443 (1108)
+++|++..++.+.+.+...... .+.++|.+|+|||++++.++... ........+..+..+.......+..
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~l~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------ 87 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERKNIP--HLLFSGPPGTGKTATAIALARDL--FGENWRDNFIEMNASDERGIDVVRH------ 87 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTTCCC--CEEEECSTTSSHHHHHHHHHHHH--HGGGGGGGEEEEETTCTTCHHHHHH------
T ss_pred HHcCcHHHHHHHHHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHH--hccccccceEEeccccccChHHHHH------
Confidence 4679999999998888765322 38899999999999999887652 1111111233322333322221111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHh------cCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCchH-HHHhc
Q 048834 444 TRVKIAEELALNELESRLIRLF------QSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREAF-VARAF 514 (1108)
Q Consensus 444 ~~~~~~~~~~~~~l~~~l~~~l------~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~~-v~~~~ 514 (1108)
.+.... ..++.++++||++. ....+.+...+. ....+..+++++.... +....
T Consensus 88 ----------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~--~~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 88 ----------------KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME--MYSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp ----------------HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHH--HTTTTEEEEEEESCGGGSCHHH
T ss_pred ----------------HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHH--hcCCCCeEEEEeCChhhcCHHH
Confidence 111111 25688999999875 334444544443 1224667777776542 21222
Q ss_pred CCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHH
Q 048834 515 SPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLG 570 (1108)
Q Consensus 515 ~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~ 570 (1108)
......+.+.+++.++..+++...+...... .-......++..++|.|..+..+.
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2233478899999999998887655321111 112234456677888887554433
No 179
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=4.8e-05 Score=76.65 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=53.2
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
..|-|+|.+|+||||||+++++. ...+....+|+..+ .+...+........ ... +.+.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-------~~~----~~~~~~~ 115 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQDQT-------MNE----KLDYIKK 115 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC---CC-------CHH----HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhccch-------HHH----HHHHhcC
Confidence 67889999999999999999953 44444445566543 44444443322111 111 1122222
Q ss_pred CeEEEEEcCCCC--hhhHh--Hhhh-hCCC-CCCCcEEEEEecc
Q 048834 268 KRYLVILTDVRT--PDIWE--IIKF-LFPN-SLSGSRVILSFRE 305 (1108)
Q Consensus 268 kr~LlVLDDVw~--~~~~~--~l~~-~~~~-~~~GSrIiiTTR~ 305 (1108)
. -+|||||++. ...|. .+.. .+.. ...+.+||+||..
T Consensus 116 ~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 116 V-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp S-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred C-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 2 3899999965 23331 1221 1111 1346688888873
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.60 E-value=2.3e-05 Score=77.36 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=53.8
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
-..+.|+|..|+||||||+++++.......+ ..+|+. ..++...+........ .. .+.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~-------~~----~~~~~~~ 99 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGK-------DT----KFLKTVL 99 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTC-------CS----HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCch-------HH----HHHHHhc
Confidence 4569999999999999999998542112222 233443 3344444433322111 11 1222233
Q ss_pred CCeEEEEEcCCCC--hhhH--hHhhhhCCC-CCCCcEEEEEecc
Q 048834 267 HKRYLVILTDVRT--PDIW--EIIKFLFPN-SLSGSRVILSFRE 305 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~--~~l~~~~~~-~~~GSrIiiTTR~ 305 (1108)
+.-+|||||++. .+.| +.+...+.. ...|..||+||..
T Consensus 100 -~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 -NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp -TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred -CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 345789999983 3344 222222211 1357788888864
No 181
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00011 Score=78.12 Aligned_cols=108 Identities=7% Similarity=-0.008 Sum_probs=65.3
Q ss_pred hhhhhhHHHhhhc--CCCCCceEeEEccCCCChhhHHHHhcCCcccccCC-----c--ceeEEEcCCCCCHHHHHHHHHH
Q 048834 170 NDEVKGLAELILS--DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF-----Q--CRAWFLVPPRLDKRELAINILN 240 (1108)
Q Consensus 170 ~~~~~~~~~~l~~--~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F-----~--~~~~~~~s~~~~~~~l~~~i~~ 240 (1108)
+++.+.+...|.. .......+-|+|++|.|||++|+.|.++ ..... . ..+++......+...+...|++
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~--L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~ 103 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE--LITSSARKELPIFDYIHIDALELAGMDALYEKIWF 103 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH--HHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhhhccCCceEEEEEeccccCCHHHHHHHHHH
Confidence 4566666555544 2345566889999999999999999954 43221 1 2334554566788889999999
Q ss_pred HhCCCchhHHHHhhcchHHHHHHH--ccCCeEEEEEcCCCCh
Q 048834 241 QFAPTDVELEEKLLESPQTVVHNY--LIHKRYLVILTDVRTP 280 (1108)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~l~~~--l~~kr~LlVLDDVw~~ 280 (1108)
++.+.... .....+.+...+... -.+++++||||+++..
T Consensus 104 ~L~g~~~~-~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l 144 (318)
T 3te6_A 104 AISKENLC-GDISLEALNFYITNVPKAKKRKTLILIQNPENL 144 (318)
T ss_dssp HHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSS
T ss_pred HhcCCCCC-chHHHHHHHHHHHHhhhccCCceEEEEecHHHh
Confidence 99765311 000112222223321 2467899999999864
No 182
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=7e-05 Score=82.15 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=64.0
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHH
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELE 250 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~ 250 (1108)
...+.+..++..+. ...+-|+|++|+||||+|+.+.+. +........++.+... +...
T Consensus 32 ~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~-~~~~----------------- 89 (327)
T 1iqp_A 32 HIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNAS-DERG----------------- 89 (327)
T ss_dssp HHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETT-CHHH-----------------
T ss_pred HHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeecc-ccCc-----------------
Confidence 55566666666543 334899999999999999999843 3222111123333211 1000
Q ss_pred HHhhcchHHHHHHH-----c-cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 251 EKLLESPQTVVHNY-----L-IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 251 ~~~~~~l~~~l~~~-----l-~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
.+.....+.+. + .+++.+||+||++. ...++.|...+.....++++|+||...
T Consensus 90 ---~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 90 ---INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp ---HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred ---hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 00111111111 2 26788999999985 355677766665556678999888654
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.43 E-value=9.9e-05 Score=83.81 Aligned_cols=102 Identities=10% Similarity=0.073 Sum_probs=58.8
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
..-+.|+|.+|+||||||+++.+. +..+|...-++.++ ...+..++...+.... ...+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~----~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT----SEKFLNDLVDSMKEGK-----------LNEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEE----HHHHHHHHHHHHHTTC-----------HHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee----HHHHHHHHHHHHHccc-----------HHHHHHHhc
Confidence 566999999999999999999953 54444322233322 2234444444433211 112334444
Q ss_pred CCeEEEEEcCCCChh----hHhHhhhhCCC-CCCCcEEEEEecc
Q 048834 267 HKRYLVILTDVRTPD----IWEIIKFLFPN-SLSGSRVILSFRE 305 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~~----~~~~l~~~~~~-~~~GSrIiiTTR~ 305 (1108)
.+.-+|+|||+.... .-+.+...+.. ...|..||+||..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 466789999997432 22333333221 2457889999875
No 184
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0011 Score=70.62 Aligned_cols=172 Identities=13% Similarity=0.182 Sum_probs=100.9
Q ss_pred eeeehHHHHHHHHHHhCC--CCceEEEEEEcCCCChHHHHHHHHhcCccccc---cCceeEEEEeccCCCcCHHHHHHHH
Q 048834 365 LVGLKDQLLRLAQLTMSS--SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQ---NFEYHAWANVDVSHDFDLRKVFINI 439 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~~~--~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~---~f~~~~w~~v~~s~~~~~~~l~~~i 439 (1108)
+.||+.++..+...+... .+.+..+.++|.+|.|||++++.+.....-.. ......++.+......+...++..+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 468999999998888765 56788899999999999999999987631111 1112344443366666777888889
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHH--hcCCceEEEEeCCCChhhHHHHHHHhCCCCCCCCCE--EEEEcCchH-----H
Q 048834 440 LEQVTRVKIAEELALNELESRLIRL--FQSKRYLIVLDDVHLPGAWYELQRIFSPNTSSSGSR--VILLTREAF-----V 510 (1108)
Q Consensus 440 l~~l~~~~~~~~~~~~~l~~~l~~~--l~~k~~llvlDdv~~~~~~~~l~~~~~~~~~~~~s~--iivttr~~~-----v 510 (1108)
+.++.+...........+...+... -.++.+++++|+++....-+.+...+.-... ..++ +|.++...+ +
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~-~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISS-KNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHC-SSCCEEEEEECCSSCCCHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccc-cCCcEEEEEEecCcccchhhc
Confidence 9888654221112233343333332 2456799999998764333334333310001 2232 222232211 1
Q ss_pred ----HHhcCCCcceEecCCCChhhhHHHHhhhh
Q 048834 511 ----ARAFSPSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 511 ----~~~~~~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
...+ ....+.+.+.+.++..+++....
T Consensus 181 ~~~v~SR~--~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 181 NIMPSLKA--HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HTCHHHHT--TEEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhhccC--CceEEEeCCCCHHHHHHHHHHHH
Confidence 1111 12568899999999988876554
No 185
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.42 E-value=0.0037 Score=70.23 Aligned_cols=281 Identities=10% Similarity=0.036 Sum_probs=139.4
Q ss_pred ccCCCeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCCcccccccc-ccCCCCCCcEEeccCC------------cCc--
Q 048834 757 RRGYRLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRWTFLDSIPE-SVGDLPCLETLDLKHT------------NIT-- 820 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~L~~~------------~l~-- 820 (1108)
+.+|.+|+.+.+..+ +..++ ..+.++.+|+.+++..+ +..++. .+..+.+|+.+.+..+ .+.
T Consensus 67 F~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred hhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 345677888888654 55554 45778888888888654 445543 3455666666554322 100
Q ss_pred cCC--------hhhccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeeccc
Q 048834 821 SLP--------KSIWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 821 ~lp--------~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 892 (1108)
.+| ..+.++++|+.+.+..+.. ... ...+..+.+|+.+.+...- ..-....+..+..|+.+.+.....
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~-~~~F~~c~~L~~i~l~~~~-~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDSME--TLH-NGLFSGCGKLKSIKLPRNL-KIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTTCC--EEC-TTTTTTCTTCCBCCCCTTC-CEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccCccccccchhhhcccCCCcEEecCCccc--eec-cccccCCCCceEEEcCCCc-eEeCchhhccccccceeecCCCce
Confidence 111 1234556666666654321 111 1224455566655443210 000112344455555555443221
Q ss_pred chhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecccCC-CCCCCCCCCCcceEEEEeccCCCCC
Q 048834 893 SLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGKLPE-PLKLDKLPPNLRILTLSLSYLSEDP 971 (1108)
Q Consensus 893 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~ 971 (1108)
..+ .......+|+.+.+.... ..+.......+..|+.+.+....-. .......++.++.+.+....+.
T Consensus 221 ~i~---~~~~~~~~l~~i~ip~~~-----~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--- 289 (394)
T 4fs7_A 221 YLG---DFALSKTGVKNIIIPDSF-----TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--- 289 (394)
T ss_dssp EEC---TTTTTTCCCCEEEECTTC-----CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---
T ss_pred Eee---hhhcccCCCceEEECCCc-----eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec---
Confidence 111 112233566666663211 1111223344555666655433210 0011112235555554433211
Q ss_pred ccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCCcccccceEeecccCCCC-C-CcccC
Q 048834 972 MPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMPELRELEIRCCKKMK-K-PIELE 1048 (1108)
Q Consensus 972 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~-l-p~~l~ 1048 (1108)
...+..+.+|+.+.+..+ + ...-...+..+++|+.+.|.. .++.++. .+.++.+|+.+.+..+ +. + ...+.
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i-~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~ 363 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-V-KFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQ 363 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-C-CEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBT
T ss_pred cccccccccccccccccc-c-ceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhh
Confidence 123456778888877543 2 111223455677888888753 3566643 4567788888888654 33 3 34567
Q ss_pred CCCCCCEEEEec
Q 048834 1049 KLSSLKELTLTD 1060 (1108)
Q Consensus 1049 ~l~~L~~L~l~~ 1060 (1108)
+|.+|+.+.+..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 788888888854
No 186
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=0.00016 Score=71.39 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=44.4
Q ss_pred CCCeeEEEEeCCC-CCCC-----CchhhcCCCCccEEecCCcccc-----ccccccCCCCCCcEEeccCCcCcc-----C
Q 048834 759 GYRLLRVLDLEGV-YKPV-----LPETVGKLQLLRYFGLRWTFLD-----SIPESVGDLPCLETLDLKHTNITS-----L 822 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~~-----l 822 (1108)
..+.|++|+|++| .+.. +...+....+|++|+|++|.+. .+...+...++|++|+|++|.+.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4555777777776 5543 3344555566666666666554 233444445566666666665541 3
Q ss_pred ChhhccccccCEEEe
Q 048834 823 PKSIWKVKTLRHLYM 837 (1108)
Q Consensus 823 p~~i~~l~~L~~L~l 837 (1108)
...+...++|++|++
T Consensus 114 ~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 114 VEALQSNTSLIELRI 128 (185)
T ss_dssp HHGGGGCSSCCEEEC
T ss_pred HHHHHhCCCceEEEe
Confidence 344455555555555
No 187
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=5.1e-05 Score=74.94 Aligned_cols=115 Identities=17% Similarity=0.042 Sum_probs=75.0
Q ss_pred hhhcCCCCccEEecCCc-ccc-----ccccccCCCCCCcEEeccCCcCc-----cCChhhccccccCEEEeccccccccc
Q 048834 778 ETVGKLQLLRYFGLRWT-FLD-----SIPESVGDLPCLETLDLKHTNIT-----SLPKSIWKVKTLRHLYMNDIYLQMSV 846 (1108)
Q Consensus 778 ~~i~~l~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~ 846 (1108)
..+...++|++|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|++++|.+....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44666778888888887 665 35566667778888888888665 24445566678888888887664321
Q ss_pred --cCCccccCccccccccc--ccccCCC----CChhhhccCcCCceeeeeeccc
Q 048834 847 --QKPFVKYSLTNLQTLWS--LLIGNKS----PPLNWLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 847 --~~~~~l~~l~~L~~L~~--~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~ 892 (1108)
.+...+...+.|+.|++ ..+.... .+...+...++|+.|+++++..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 12333556677888877 4444332 2344556667888888887654
No 188
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.34 E-value=0.00017 Score=74.90 Aligned_cols=77 Identities=21% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCCeeEEEEeCCCCCCCCc---hhhcCCCCccEEecCCccccccccccCCCC--CCcEEeccCCcCc-cCCh-------h
Q 048834 759 GYRLLRVLDLEGVYKPVLP---ETVGKLQLLRYFGLRWTFLDSIPESVGDLP--CLETLDLKHTNIT-SLPK-------S 825 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp---~~i~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~L~~~~l~-~lp~-------~ 825 (1108)
++++|++|+|++|.+..++ ..+..+++|++|+|++|.+..+ ..+..+. +|++|+|++|.+. .+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4666999999999887764 5667889999999999888766 2344444 8889999888776 3442 2
Q ss_pred hccccccCEEE
Q 048834 826 IWKVKTLRHLY 836 (1108)
Q Consensus 826 i~~l~~L~~L~ 836 (1108)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677777776
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.31 E-value=0.00017 Score=86.46 Aligned_cols=46 Identities=28% Similarity=0.323 Sum_probs=31.6
Q ss_pred ceeeehHHHHHHHHHHhC---------C--CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS---------S--SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~---------~--~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
++.|.+...+++...+.- . ...|+-+-++|++|+|||.+|+++...
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 344666666655544431 1 123567889999999999999999876
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.00011 Score=73.49 Aligned_cols=38 Identities=8% Similarity=0.161 Sum_probs=29.3
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+++.+.+..++..+ ....+-|+|.+|+||||+|+.+.+
T Consensus 28 ~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 28 DEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp HHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 35667777777653 334578999999999999999984
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00014 Score=77.87 Aligned_cols=25 Identities=16% Similarity=0.096 Sum_probs=21.2
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
...-+-|+|.+|+||||||+++.+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3455889999999999999999843
No 192
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.16 E-value=0.00041 Score=73.14 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.2
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+-|-|+|.+|+||||+|+++.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999985
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.14 E-value=0.0012 Score=62.01 Aligned_cols=21 Identities=5% Similarity=0.036 Sum_probs=19.2
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
|-|+|..|+|||++|+++++.
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 779999999999999999854
No 194
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.0019 Score=70.46 Aligned_cols=184 Identities=18% Similarity=0.222 Sum_probs=101.5
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQ 442 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~ 442 (1108)
.+++|++..++.+.+.+..... +. +.++|.+|+|||++|+.++.. +........++.+..+....... .+++...
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~-~~-~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~ 95 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM-PH-MIISGMPGIGKTTSVHCLAHE--LLGRSYADGVLELNASDDRGIDV-VRNQIKH 95 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC-CC-EEEECSTTSSHHHHHHHHHHH--HHGGGHHHHEEEECTTSCCSHHH-HHTHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCC-Ce-EEEECcCCCCHHHHHHHHHHH--hcCCcccCCEEEecCccccChHH-HHHHHHH
Confidence 3568999999998888866432 33 889999999999999988765 21111111122222333222211 1111111
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHh-cCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCchH-HHHhcCCCc
Q 048834 443 VTRVKIAEELALNELESRLIRLF-QSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREAF-VARAFSPSI 518 (1108)
Q Consensus 443 l~~~~~~~~~~~~~l~~~l~~~l-~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~~-v~~~~~~~~ 518 (1108)
+... ...+ .+++.++++||++. ...++.+...+. ....++.+++++.... +........
T Consensus 96 ~~~~---------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le--~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 96 FAQK---------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTME--LYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHB---------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH--HTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHhc---------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHh--ccCCCceEEEEeCChhhchhHHHhhc
Confidence 1100 0011 34588999999875 333444444332 1124567777665432 222222344
Q ss_pred ceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhH-HHHH
Q 048834 519 ILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLA-ICVL 569 (1108)
Q Consensus 519 ~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPla-l~~~ 569 (1108)
..+.+.+++.++..+++...+...... .-.+....++..++|.|.. +..+
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 588999999999999887654321111 1123345677788998854 4433
No 195
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.13 E-value=0.0038 Score=70.16 Aligned_cols=278 Identities=14% Similarity=0.061 Sum_probs=151.4
Q ss_pred ccCCCeeEEEEeCCCCCCCCc-hhhcCCCCccEEecCC------------ccc---------ccc-ccccCCCCCCcEEe
Q 048834 757 RRGYRLLRVLDLEGVYKPVLP-ETVGKLQLLRYFGLRW------------TFL---------DSI-PESVGDLPCLETLD 813 (1108)
Q Consensus 757 ~~~l~~Lr~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~------------~~i---------~~l-p~~i~~l~~L~~L~ 813 (1108)
+.+|.+|+.+++..+ +..++ ..+..+.+|+.+.+.. |.+ ..+ ...+.++.+|+.+.
T Consensus 90 F~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~ 168 (394)
T 4fs7_A 90 FENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVS 168 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred hhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEe
Confidence 445677888888654 33332 2355555555554432 111 111 12356788999999
Q ss_pred ccCCcCccCChh-hccccccCEEEeccccccccccCCccccCcccccccccccccCCCCChhhhccCcCCceeeeeeccc
Q 048834 814 LKHTNITSLPKS-IWKVKTLRHLYMNDIYLQMSVQKPFVKYSLTNLQTLWSLLIGNKSPPLNWLESLRGLKKLGLTCHIA 892 (1108)
Q Consensus 814 L~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 892 (1108)
+..+ +..++.. +..+.+|+.+.+..+- .... ...+.++..|+.+.+...... .........+|+.+.+.....
T Consensus 169 l~~~-~~~I~~~~F~~c~~L~~i~l~~~~--~~I~-~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~~ 242 (394)
T 4fs7_A 169 LPDS-METLHNGLFSGCGKLKSIKLPRNL--KIIR-DYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSFT 242 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEEC-TTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTCC
T ss_pred cCCc-cceeccccccCCCCceEEEcCCCc--eEeC-chhhccccccceeecCCCceE--eehhhcccCCCceEEECCCce
Confidence 8764 3445543 6678889988886541 1111 223556677776654332111 112222345777776653221
Q ss_pred chhhHHHHHhhcCCCcEEEEEecCCCCCCCccccCCCCCccCccceEeecc-cCCCCCCCCCCCCcceEEEEeccCCCCC
Q 048834 893 SLGQIAKWIQDLISLESLRLRSLNDFGEPSDLVIGPLNNHRALNELYLLGK-LPEPLKLDKLPPNLRILTLSLSYLSEDP 971 (1108)
Q Consensus 893 ~~~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 971 (1108)
.++. ..+..+.+|+.+.+..+.. ......+..+..++...+... ++... ...+.+|+.+.+..+ +..--
T Consensus 243 ~i~~--~~f~~~~~l~~~~~~~~~~-----~i~~~~F~~~~~l~~~~~~~~~i~~~~--F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 243 ELGK--SVFYGCTDLESISIQNNKL-----RIGGSLFYNCSGLKKVIYGSVIVPEKT--FYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp EECS--STTTTCSSCCEEEECCTTC-----EECSCTTTTCTTCCEEEECSSEECTTT--TTTCTTCCEEEECTT-CCEEC
T ss_pred eccc--ccccccccceeEEcCCCcc-----eeeccccccccccceeccCceeecccc--ccccccccccccccc-cceec
Confidence 1111 1234567888888754321 111223444556665554333 22211 122358888888543 22112
Q ss_pred ccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCCcccccceEeecccCCCCCCcccCCC
Q 048834 972 MPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMPELRELEIRCCKKMKKPIELEKL 1050 (1108)
Q Consensus 972 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~lp~~l~~l 1050 (1108)
...+.++++|+.+.|..+ + ...-...+.++++|+.+.+... ++.++. .+..|++|+.+.+..+-.. +...+.++
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~~~-~~~~F~~c 387 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRLEQ-YRYDFEDT 387 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGGGG-GGGGBCTT
T ss_pred hhhhcCCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCCEE-hhheecCC
Confidence 334678899999998643 2 2222344567889999988643 666654 4567899999998654211 33456667
Q ss_pred CCCCEE
Q 048834 1051 SSLKEL 1056 (1108)
Q Consensus 1051 ~~L~~L 1056 (1108)
++|+.+
T Consensus 388 ~~L~~I 393 (394)
T 4fs7_A 388 TKFKWI 393 (394)
T ss_dssp CEEEEE
T ss_pred CCCcEE
Confidence 777654
No 196
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.09 E-value=0.00062 Score=83.33 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=31.2
Q ss_pred ceeeehHHHHHHHHHHhCC-----------CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMSS-----------SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~-----------~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
++.|.+...+.+...+... -..+..+.++|.+|+|||++|+.+...
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 3456666666665554321 012456789999999999999999765
No 197
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.09 E-value=0.00081 Score=73.23 Aligned_cols=112 Identities=9% Similarity=0.034 Sum_probs=63.2
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccc-ccCCcc-eeEEEcCCCCCHHHHHHHHHHHhCCCchh
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDI-KNHFQC-RAWFLVPPRLDKRELAINILNQFAPTDVE 248 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~-~~~F~~-~~~~~~s~~~~~~~l~~~i~~~~~~~~~~ 248 (1108)
...+.+..++..+. ...+-|+|.+|+||||+|+.+.+. + ...+.. .+.+..+...+...
T Consensus 24 ~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~--------------- 84 (319)
T 2chq_A 24 EVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDV--------------- 84 (319)
T ss_dssp HHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH--HHTTCHHHHCEEEETTSTTCTTT---------------
T ss_pred HHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH--hcCCcccCCeEEEeCccccChHH---------------
Confidence 44555666665433 333889999999999999999843 3 122221 22233332211110
Q ss_pred HHHHhhcchHHHHHH--Hc-cCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 249 LEEKLLESPQTVVHN--YL-IHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 249 ~~~~~~~~l~~~l~~--~l-~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
.......... .+ .+++.+||+||+.. ....+.|...+.....+.++|+||...
T Consensus 85 -----~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 85 -----VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -----SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -----HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 0000000110 12 25678999999975 345677777776656778888888653
No 198
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.03 E-value=0.00073 Score=73.18 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=55.0
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
.....|-|+|.+|+||||+|+.+.+.-.........-++.++.. .+......... ......+...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~l~~~~~g~~~---~~~~~~~~~~ 129 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------------DLVGQYIGHTA---PKTKEVLKRA 129 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------------GTCCSSTTCHH---HHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------------HhhhhcccccH---HHHHHHHHhc
Confidence 34456889999999999999988743211122222234444311 11111100000 1111222222
Q ss_pred ccCCeEEEEEcCCC-----------ChhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 265 LIHKRYLVILTDVR-----------TPDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 265 l~~kr~LlVLDDVw-----------~~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
+.-+|++||++ +....+.|...+.....+.+||.||...
T Consensus 130 ---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~ 179 (309)
T 3syl_A 130 ---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYAD 179 (309)
T ss_dssp ---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHH
T ss_pred ---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChH
Confidence 23488999998 3344566666555555667888888654
No 199
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.00 E-value=0.00066 Score=63.91 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=21.3
Q ss_pred CceEeEEccCCCChhhHHHHhcCC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
-..++|+|..|+|||||++.+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999954
No 200
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.99 E-value=0.00074 Score=63.23 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=19.4
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
|-|+|..|+|||++|+++.+.
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 779999999999999999964
No 201
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.95 E-value=0.0018 Score=63.82 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=28.8
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.+.+.+.+++... ....|-|+|.+|+||||+|+.+.+
T Consensus 28 ~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 28 DTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp HHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHH
Confidence 35666777776553 344578999999999999999984
No 202
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.94 E-value=0.00011 Score=76.52 Aligned_cols=39 Identities=8% Similarity=-0.088 Sum_probs=27.9
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVP 226 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s 226 (1108)
....+-|+|.+|+||||||+.+.+. .........|+..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHH
Confidence 4466899999999999999999843 43333344566553
No 203
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.93 E-value=0.0016 Score=72.69 Aligned_cols=38 Identities=11% Similarity=-0.050 Sum_probs=27.6
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+.+..++..+. ....+-|+|..|+||||+|+.+.+
T Consensus 23 ~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 23 HVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp HHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 45556666665433 224678999999999999999874
No 204
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.92 E-value=0.00062 Score=70.60 Aligned_cols=82 Identities=20% Similarity=0.237 Sum_probs=59.0
Q ss_pred cCCCCccEEecCCcccccc---ccccCCCCCCcEEeccCCcCccCChhhcccc--ccCEEEeccccccccccC-----Cc
Q 048834 781 GKLQLLRYFGLRWTFLDSI---PESVGDLPCLETLDLKHTNITSLPKSIWKVK--TLRHLYMNDIYLQMSVQK-----PF 850 (1108)
Q Consensus 781 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~L~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~~~-----~~ 850 (1108)
.++++|++|+|++|.+..+ |..+..+++|++|+|++|.++.+ ..+..+. +|++|++.+|.+....+. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5688999999999987765 45667899999999999988876 4466666 899999999877543321 11
Q ss_pred cccCccccccccc
Q 048834 851 VKYSLTNLQTLWS 863 (1108)
Q Consensus 851 ~l~~l~~L~~L~~ 863 (1108)
.+..+++|+.|+.
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 2445555655543
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.85 E-value=0.0012 Score=70.86 Aligned_cols=73 Identities=7% Similarity=0.035 Sum_probs=42.6
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
...+.|.|+|.+|+||||||+++.+. ... -++.++ ...+..... +.. .......+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~--~~~-----~~i~v~----~~~l~~~~~----g~~-------~~~~~~~f~~a 104 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE--CQA-----NFISIK----GPELLTMWF----GES-------EANVREIFDKA 104 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH--TTC-----EEEEEC----HHHHHHHHH----TTC-------TTHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH--hCC-----CEEEEE----hHHHHhhhc----Cch-------HHHHHHHHHHH
Confidence 34556899999999999999999953 321 233332 223322221 111 11122333344
Q ss_pred ccCCeEEEEEcCCCC
Q 048834 265 LIHKRYLVILTDVRT 279 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~ 279 (1108)
......+|+||+++.
T Consensus 105 ~~~~p~il~iDEid~ 119 (301)
T 3cf0_A 105 RQAAPCVLFFDELDS 119 (301)
T ss_dssp HHTCSEEEEECSTTH
T ss_pred HhcCCeEEEEEChHH
Confidence 445678999999984
No 206
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.80 E-value=0.00079 Score=73.50 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=20.7
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
....|-|+|.+|+||||+|+++.+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999984
No 207
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.69 E-value=0.0034 Score=68.35 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=62.4
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHH
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELE 250 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~ 250 (1108)
.....+.+++..+. ...++-+.|..|+||||+|+++.+. ... ..+.+..+. .+...+ ++.+......
T Consensus 33 ~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~--l~~---~~~~i~~~~-~~~~~i-~~~~~~~~~~----- 99 (324)
T 3u61_B 33 FDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD--VNA---DMMFVNGSD-CKIDFV-RGPLTNFASA----- 99 (324)
T ss_dssp HHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH--TTE---EEEEEETTT-CCHHHH-HTHHHHHHHB-----
T ss_pred HHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH--hCC---CEEEEcccc-cCHHHH-HHHHHHHHhh-----
Confidence 44566666666433 3356777888999999999999843 311 122333332 222222 1111111000
Q ss_pred HHhhcchHHHHHHHccCCeEEEEEcCCCChh---hHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 251 EKLLESPQTVVHNYLIHKRYLVILTDVRTPD---IWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 251 ~~~~~~l~~~l~~~l~~kr~LlVLDDVw~~~---~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
....+++-+|++||+.... ..+.|...+.....+.+||+||....
T Consensus 100 ------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 100 ------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp ------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred ------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 0123477899999999754 45555554433345678888887543
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.67 E-value=0.0018 Score=70.57 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=53.2
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
....+-|+|.+|+||||||+.+.+. ....-...+++. ...+..++...+... . ...+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~--~~~~~~~~~~i~------~~~~~~~~~~~~~~~----------~-~~~~~~~~ 96 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE--AKKRGYRVIYSS------ADDFAQAMVEHLKKG----------T-INEFRNMY 96 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH--HHHTTCCEEEEE------HHHHHHHHHHHHHHT----------C-HHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH--HHHCCCEEEEEE------HHHHHHHHHHHHHcC----------c-HHHHHHHh
Confidence 4456899999999999999999953 322211123333 223333443333211 1 11122223
Q ss_pred cCCeEEEEEcCCCChh---h-HhHhhhhCCC-CCCCcEEEEEec
Q 048834 266 IHKRYLVILTDVRTPD---I-WEIIKFLFPN-SLSGSRVILSFR 304 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~~---~-~~~l~~~~~~-~~~GSrIiiTTR 304 (1108)
. +.-+|++||+.... . .+.+...+.. ...|.+||+||.
T Consensus 97 ~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 K-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp H-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred c-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3 35688999997532 2 2333333221 234678888885
No 209
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.0018 Score=71.62 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=61.1
Q ss_pred hhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcc-eeEEEcCCCCCHHHHHHHHHHHhCCCchhH
Q 048834 171 DEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQC-RAWFLVPPRLDKRELAINILNQFAPTDVEL 249 (1108)
Q Consensus 171 ~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~-~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~ 249 (1108)
..++.+..++..+.. ..+-|+|..|+||||+|+.+.+.-.....+.. ...+..+.......+. +.+........
T Consensus 44 ~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 118 (353)
T 1sxj_D 44 HAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR-EKVKNFARLTV-- 118 (353)
T ss_dssp TTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT-THHHHHHHSCC--
T ss_pred HHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH-HHHHHHhhhcc--
Confidence 445566666655432 23889999999999999999843111111221 1122223322332221 11111110000
Q ss_pred HHHhhcchHHHHHHHccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 250 EEKLLESPQTVVHNYLIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 250 ~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
...........-.+++-+|++|++.. ....+.|...+.......++|++|..
T Consensus 119 ----~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 119 ----SKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp ----CCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred ----cccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 00000000111124556889999875 33455555554444456788887743
No 210
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.0027 Score=73.86 Aligned_cols=24 Identities=8% Similarity=-0.103 Sum_probs=21.3
Q ss_pred CceEeEEccCCCChhhHHHHhcCC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+.+-|+|.+|+||||+|+++.+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999843
No 211
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.59 E-value=0.0051 Score=64.90 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=21.5
Q ss_pred CCCceEeEEccCCCChhhHHHHhcC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
....-|-|+|.+|+||||+|+++.+
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3455688999999999999999985
No 212
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.59 E-value=0.0085 Score=65.27 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=99.1
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQ 442 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~ 442 (1108)
.+++|.+..++.+...+.... +..+.++|.+|+|||++|+.++... ........+..+..+....... .......
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 99 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALAREL--FGENWRHNFLELNASDERGINV-IREKVKE 99 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHH--HGGGHHHHEEEEETTCHHHHHT-THHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHh--cCCcccCceEEeeccccCchHH-HHHHHHH
Confidence 346899999988888876643 2238899999999999999987652 1111111122211221100000 0000000
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCchH-HHHhcCCCcc
Q 048834 443 VTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREAF-VARAFSPSII 519 (1108)
Q Consensus 443 l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~~-v~~~~~~~~~ 519 (1108)
.. .......+++.++++||++. ...++.+...+. ....+.++++++.... +.........
T Consensus 100 ~~---------------~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le--~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 100 FA---------------RTKPIGGASFKIIFLDEADALTQDAQQALRRTME--MFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp HH---------------HSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHH--HTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred HH---------------hhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH--hcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 00 00001125678999999875 344555554443 1224667777765432 1111112235
Q ss_pred eEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHH
Q 048834 520 LLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLG 570 (1108)
Q Consensus 520 ~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~ 570 (1108)
.+.+.+++.++...++...+...... .-.+....++..++|.|..+..+.
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 78899999999888887654322211 112334456667788876544433
No 213
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.56 E-value=0.0043 Score=70.40 Aligned_cols=25 Identities=8% Similarity=-0.081 Sum_probs=21.4
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..+-|-|+|++|+||||||+++.+.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3466889999999999999999853
No 214
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.51 E-value=0.0013 Score=70.45 Aligned_cols=37 Identities=5% Similarity=-0.087 Sum_probs=26.4
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccc-cCCcceeEEEc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIK-NHFQCRAWFLV 225 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~-~~F~~~~~~~~ 225 (1108)
...+-|+|..|+|||+||+++.+. .. ..--..+|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~--~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE--LSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH--HHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH--HHHhcCCcEEEEEH
Confidence 356889999999999999999953 33 33233445554
No 215
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.51 E-value=0.0044 Score=67.18 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=20.8
Q ss_pred CceEeEEccCCCChhhHHHHhcCC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+-|-++|.+|+|||+||+++.+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 355889999999999999999853
No 216
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.44 E-value=0.0038 Score=68.98 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=25.4
Q ss_pred hhhhhHHHhh-hcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELI-LSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l-~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+.+.+++ ..+ ....+.|+|..|+||||+|+.+.+
T Consensus 21 ~~~~~l~~~~~~~~--~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 21 ELTNFLKSLSDQPR--DLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp HHHHHHHTTTTCTT--CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred HHHHHHHHHHhhCC--CCCeEEEECCCCCCHHHHHHHHHH
Confidence 3445555555 332 222389999999999999998763
No 217
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.44 E-value=0.014 Score=64.69 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=26.9
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+...+..+...-+.+-|+|.+|+||||+|+++.+.
T Consensus 58 ~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 58 VVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp HHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345555554444467899999999999999999843
No 218
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0068 Score=65.52 Aligned_cols=24 Identities=8% Similarity=-0.090 Sum_probs=21.0
Q ss_pred CceEeEEccCCCChhhHHHHhcCC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+-|-++|++|+||||||+++.+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 466889999999999999999853
No 219
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.30 E-value=0.037 Score=54.43 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=36.8
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
..++|++..++.+.+.+.... +..+.++|.+|+|||++++.++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999887643 446789999999999999988765
No 220
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.26 E-value=0.0046 Score=67.78 Aligned_cols=39 Identities=23% Similarity=0.052 Sum_probs=27.1
Q ss_pred hhhhhHHHhhhc---CCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 171 DEVKGLAELILS---DYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 171 ~~~~~~~~~l~~---~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+.+..++.. .......|-|+|..|+||||+|+++.+
T Consensus 36 ~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 36 SIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 334444444443 234455689999999999999999973
No 221
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.22 E-value=0.01 Score=65.19 Aligned_cols=24 Identities=25% Similarity=0.104 Sum_probs=21.0
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..+-|-|+|..|+||||||+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999984
No 222
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.14 E-value=0.016 Score=56.30 Aligned_cols=107 Identities=12% Similarity=0.030 Sum_probs=56.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCC--ch-h-H----HHHhhcchHH
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPT--DV-E-L----EEKLLESPQT 259 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~--~~-~-~----~~~~~~~l~~ 259 (1108)
.+|.|+|+.|+||||+|+.+ .. . .|. ++.. .++.++....-... .. . . ..........
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~--~--g~~---~i~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE--R--GAK---VIVM------SDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVAR 67 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH--T--TCE---EEEH------HHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH--C--CCc---EEEH------hHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHH
Confidence 36999999999999999999 32 1 111 2332 23333332221100 00 0 0 0001122334
Q ss_pred HHHHHc-cCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhh
Q 048834 260 VVHNYL-IHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMH 311 (1108)
Q Consensus 260 ~l~~~l-~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~ 311 (1108)
.+.+.+ ....-.+|+|.+....+++.+..... ....+|....+.+++..
T Consensus 68 ~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~ 117 (179)
T 3lw7_A 68 LCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYK 117 (179)
T ss_dssp HHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHC---SCEEEEEEECCHHHHHH
T ss_pred HHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhC---CCcEEEEEECCHHHHHH
Confidence 455555 13334578899977777777765443 34566666666666543
No 223
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.11 E-value=0.0014 Score=68.76 Aligned_cols=69 Identities=12% Similarity=0.136 Sum_probs=41.8
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEc--CCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLV--PPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNY 264 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~--s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 264 (1108)
-+++-|+|++|+||||||.++... .-....|++. .+..+. .. . +.+.....+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------~~-~-------~le~~l~~i~~~ 179 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------YN-T-------DFNVFVDDIARA 179 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------CB-C-------CHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------hh-c-------CHHHHHHHHHHH
Confidence 356789999999999999998732 2223567776 332111 00 0 122223334455
Q ss_pred ccCCeEEEEEcCCCC
Q 048834 265 LIHKRYLVILTDVRT 279 (1108)
Q Consensus 265 l~~kr~LlVLDDVw~ 279 (1108)
+...+ +||+|++..
T Consensus 180 l~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 180 MLQHR-VIVIDSLKN 193 (331)
T ss_dssp HHHCS-EEEEECCTT
T ss_pred HhhCC-EEEEecccc
Confidence 55555 999999975
No 224
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.08 E-value=0.0091 Score=65.54 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+-|-|+|.+|+||||||+++.+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 44889999999999999999953
No 225
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.03 E-value=0.011 Score=59.99 Aligned_cols=88 Identities=9% Similarity=-0.059 Sum_probs=50.5
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHH-------HHhh---c
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELE-------EKLL---E 255 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~-------~~~~---~ 255 (1108)
.-.++.|+|.+|+||||||..+.. ..=..++|+.....++..++.. +.+.......... .... .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345799999999999999999874 1123566777766566666543 3333322110000 0001 1
Q ss_pred chHHHHHHHccCCeEEEEEcCCCC
Q 048834 256 SPQTVVHNYLIHKRYLVILTDVRT 279 (1108)
Q Consensus 256 ~l~~~l~~~l~~kr~LlVLDDVw~ 279 (1108)
.....++..+..+.-+||+|.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 122334444444466899998864
No 226
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.02 E-value=0.034 Score=63.32 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=30.7
Q ss_pred eehHHHHHHHHHHhCC-----CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 367 GLKDQLLRLAQLTMSS-----SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 367 g~~~~l~~i~~~l~~~-----~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
|....++.+.+.+... ...+..+.++|.+++|||++...+...
T Consensus 171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 5555566665555321 234678999999999999999988754
No 227
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.99 E-value=0.036 Score=61.53 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=100.2
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-------------------eeEEEE
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-------------------YHAWAN 423 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-------------------~~~w~~ 423 (1108)
.+++|++..++.+...+... ..+.++.++|..|+|||++|+.+.....-...+. ......
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 34689999999888888653 3345788999999999999998865421111000 001111
Q ss_pred eccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH-HhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCE
Q 048834 424 VDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIR-LFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSR 500 (1108)
Q Consensus 424 v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~-~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ 500 (1108)
..... .......+...+.. ...+++.++++||++. ....+.+...+. ....+..
T Consensus 95 --~~~~~-------------------~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le--~~~~~~~ 151 (373)
T 1jr3_A 95 --AASRT-------------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE--EPPEHVK 151 (373)
T ss_dssp --TTCSC-------------------CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH--SCCSSEE
T ss_pred --ccccC-------------------CHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh--cCCCceE
Confidence 11000 00011111111110 0134578999999865 445555655553 1223555
Q ss_pred EEEEcCch-HHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHH
Q 048834 501 VILLTREA-FVARAFSPSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLG 570 (1108)
Q Consensus 501 iivttr~~-~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~ 570 (1108)
+++++... .+..........+.+.+++.++...++...+...... .-.+....++..++|.|..+..+.
T Consensus 152 ~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred EEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 66555432 2222222344688999999999888887654221111 112234557778899887665544
No 228
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.95 E-value=0.022 Score=64.50 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=34.1
Q ss_pred eeehHHHHHHHHHHhCC-----CCceEEEEEEcCCCChHHHHHHHHhcCc
Q 048834 366 VGLKDQLLRLAQLTMSS-----SSKYFLISVVGVAGSGKTTLVETIYNSS 410 (1108)
Q Consensus 366 ~g~~~~l~~i~~~l~~~-----~~~~~~i~i~G~~g~GKT~la~~~~~~~ 410 (1108)
.|.+..++.+.+.+.+. ...+..+.++|.+++|||+|...+....
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 46677777777766532 2346789999999999999999987653
No 229
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.93 E-value=0.021 Score=64.38 Aligned_cols=23 Identities=13% Similarity=-0.036 Sum_probs=20.7
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+..+-|||.+|+||||||+.+.+
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 36689999999999999999984
No 230
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.92 E-value=0.011 Score=61.77 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=19.6
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
-|.|+|..|+||||||+++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4889999999999999999853
No 231
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.89 E-value=0.021 Score=60.78 Aligned_cols=110 Identities=10% Similarity=0.008 Sum_probs=63.5
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCc-ccc-cCCcceeEEEcCC-CCCHHHHHHHHHHHhCCCchhHH
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCD-DIK-NHFQCRAWFLVPP-RLDKRELAINILNQFAPTDVELE 250 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~-~~~-~~F~~~~~~~~s~-~~~~~~l~~~i~~~~~~~~~~~~ 250 (1108)
+.+...+..+. ...+-++|..|+||||+|+.+.+.- ... .+.+. .++.-+. ..++..+ +++.+.+....
T Consensus 7 ~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p---- 78 (305)
T 2gno_A 7 ETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP---- 78 (305)
T ss_dssp HHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC----
T ss_pred HHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc----
Confidence 33444444433 5678899999999999999986420 011 12222 2333222 2333332 33444433221
Q ss_pred HHhhcchHHHHHHHccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 251 EKLLESPQTVVHNYLIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 251 ~~~~~~l~~~l~~~l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
..+++-++|+|++.. ....++|+..+....+.+++|++|.+
T Consensus 79 --------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~ 121 (305)
T 2gno_A 79 --------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRR 121 (305)
T ss_dssp --------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESC
T ss_pred --------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 124556778899985 45678888777655667888887754
No 232
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.012 Score=64.36 Aligned_cols=112 Identities=11% Similarity=0.116 Sum_probs=56.0
Q ss_pred hhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccc-cCCcc-eeEEEcCCCCCHHHHHHHHHHHhCCCchhHH
Q 048834 173 VKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIK-NHFQC-RAWFLVPPRLDKRELAINILNQFAPTDVELE 250 (1108)
Q Consensus 173 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~-~~F~~-~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~ 250 (1108)
.+.+..++..+ .+..+.++|..|+||||+|+.+.+. +. ..+.. ...+..+...+...+. +++..+...
T Consensus 34 ~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~--l~~~~~~~~~~~~~~~~~~~~~~ir-~~i~~~~~~----- 103 (340)
T 1sxj_C 34 ITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALARE--IYGKNYSNMVLELNASDDRGIDVVR-NQIKDFAST----- 103 (340)
T ss_dssp HHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHH--HHTTSHHHHEEEECTTSCCSHHHHH-THHHHHHHB-----
T ss_pred HHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH--HcCCCccceEEEEcCcccccHHHHH-HHHHHHHhh-----
Confidence 34444455443 3333899999999999999998742 22 11211 1112222222222211 111111000
Q ss_pred HHhhcchHHHHHHHccCCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecc
Q 048834 251 EKLLESPQTVVHNYLIHKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFRE 305 (1108)
Q Consensus 251 ~~~~~~l~~~l~~~l~~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~ 305 (1108)
.....+.+-++|+|++.. ....+.|...+.......++|++|..
T Consensus 104 -----------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~ 149 (340)
T 1sxj_C 104 -----------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANY 149 (340)
T ss_dssp -----------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred -----------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 000123466788999864 44455565544434456777777643
No 233
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.79 E-value=0.01 Score=66.31 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=20.3
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+-|-|+|..|+|||+||+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999974
No 234
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.78 E-value=0.049 Score=59.13 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 267 HKRYLVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 267 ~kr~LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
+++-++|+|+++. ....++|...+....+++.+|++|.+.
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 5667788999985 445677777666555677888777654
No 235
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.75 E-value=0.19 Score=56.14 Aligned_cols=101 Identities=9% Similarity=0.059 Sum_probs=61.2
Q ss_pred CCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCcccEEEeccCCCCCceee-CCCcccccceE
Q 048834 955 PNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLRVLKLWVQKELREWTI-GKEAMPELREL 1033 (1108)
Q Consensus 955 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L 1033 (1108)
.+|+.+.+..... .-....+..+++|+.+.+... +. ......+..+++|+.+.|.. .++.+.. .+..|.+|+.+
T Consensus 265 ~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i 339 (394)
T 4gt6_A 265 AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERI 339 (394)
T ss_dssp SSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEE
T ss_pred ccccEEecccccc-eecCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEE
Confidence 4566666543211 111223456778888887532 21 11223456678888888854 3566654 45678889999
Q ss_pred eecccCCCC-C-CcccCCCCCCCEEEEecCc
Q 048834 1034 EIRCCKKMK-K-PIELEKLSSLKELTLTDMK 1062 (1108)
Q Consensus 1034 ~i~~c~~l~-l-p~~l~~l~~L~~L~l~~c~ 1062 (1108)
.|-.. +. + ...+.+|.+|+.+++.+..
T Consensus 340 ~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 340 AIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred EECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 88543 33 4 3456788999999997764
No 236
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.74 E-value=0.016 Score=60.78 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=20.0
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.-|-|+|..|+|||++|+.+.+.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 34779999999999999999853
No 237
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.72 E-value=0.015 Score=61.89 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=21.5
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..+.+-++|++|+|||+||+++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4467889999999999999999943
No 238
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.59 E-value=0.12 Score=53.89 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=84.3
Q ss_pred ceeeehHHHHHHHHHHh---CC-------CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHH
Q 048834 364 ELVGLKDQLLRLAQLTM---SS-------SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLR 433 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~---~~-------~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~ 433 (1108)
+++|.+...+.+.+.+. .. ...+..+.++|.+|+|||++|+.+++. ....| ..+. .+...+..
T Consensus 7 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~~~--~~~~~~~~ 79 (262)
T 2qz4_A 7 DVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVPF---LAMA--GAEFVEVI 79 (262)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCCE---EEEE--TTTTSSSS
T ss_pred HhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEec--hHHHHhhc
Confidence 34677776666654432 11 134567889999999999999998765 21111 1222 32211100
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCChh-----------------hHHHHHHHhCCCCCC
Q 048834 434 KVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLPG-----------------AWYELQRIFSPNTSS 496 (1108)
Q Consensus 434 ~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~-----------------~~~~l~~~~~~~~~~ 496 (1108)
.+ .....+...+.......+.++++||++... ....+...+......
T Consensus 80 ----------~~------~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 80 ----------GG------LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ----------TT------HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ----------cC------hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 00 011122222333334567899999987531 112222222211112
Q ss_pred CCCEEEEEcCchHHH-Hhc-C--CCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCch
Q 048834 497 SGSRVILLTREAFVA-RAF-S--PSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLP 563 (1108)
Q Consensus 497 ~~s~iivttr~~~v~-~~~-~--~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 563 (1108)
.+..++.+|...... ... . -....+.+...+.++..+++...+...............+...+.|.+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCC
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCC
Confidence 344566666543321 111 1 123566778888888888776554222111111222344555555553
No 239
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.51 E-value=0.026 Score=60.34 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=19.1
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-|-|+|..|+|||++|+++.+
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHH
T ss_pred cEEEECCCCchHHHHHHHHHH
Confidence 477999999999999999985
No 240
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.37 E-value=0.044 Score=58.55 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.5
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...|-|+|.+|+||||+|+++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45688999999999999999984
No 241
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.36 E-value=0.015 Score=62.64 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=20.6
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+.|+|..|+||||+|+.+.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 45799999999999999999984
No 242
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.35 E-value=0.13 Score=58.04 Aligned_cols=145 Identities=16% Similarity=0.206 Sum_probs=79.1
Q ss_pred CceeeehHHH---HHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHH
Q 048834 363 AELVGLKDQL---LRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINI 439 (1108)
Q Consensus 363 ~~~~g~~~~l---~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~i 439 (1108)
.+++|.+..+ ..+...+.... +..+.++|.+|+|||++|+.+.+. ... .+..+.... ..... .+.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~--~~~-----~f~~l~a~~-~~~~~-ir~~ 94 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY--ANA-----DVERISAVT-SGVKE-IREA 94 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH--TTC-----EEEEEETTT-CCHHH-HHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH--hCC-----CeEEEEecc-CCHHH-HHHH
Confidence 4567877776 56666665543 357889999999999999998765 221 233311211 11111 1111
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEE-EEcCchH--HHHhc
Q 048834 440 LEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVI-LLTREAF--VARAF 514 (1108)
Q Consensus 440 l~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~ii-vttr~~~--v~~~~ 514 (1108)
+... ......+++.++++|+++. ....+.+...+.. ....++ .||.+.. +....
T Consensus 95 ~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~----~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 95 IERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED----GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT----TSCEEEEEESSCGGGSSCHHH
T ss_pred HHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc----CceEEEecCCCCcccccCHHH
Confidence 1111 0111246788999999976 2333334444431 122333 3444432 22222
Q ss_pred CCCcceEecCCCChhhhHHHHhhhh
Q 048834 515 SPSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 515 ~~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
.....++.+.+++.++...++....
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHH
Confidence 2345688899999999888887654
No 243
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.30 E-value=0.0041 Score=65.52 Aligned_cols=21 Identities=14% Similarity=0.082 Sum_probs=19.0
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
|-|+|.+|+||||||+++.+.
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 779999999999999999853
No 244
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.30 E-value=0.032 Score=54.09 Aligned_cols=117 Identities=14% Similarity=-0.022 Sum_probs=60.1
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCC---CCCHHHHHHHHHHH-------hCCCch--hHHHHhhc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPP---RLDKRELAINILNQ-------FAPTDV--ELEEKLLE 255 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~---~~~~~~l~~~i~~~-------~~~~~~--~~~~~~~~ 255 (1108)
..|-|++-.|.||||.|-.+- .+...+=-.+.++...+ ..+...++..+--+ ...... ..+.....
T Consensus 29 g~i~v~tG~GkGKTTaA~Gla--lRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTA--ARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHH--HHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH--HHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 457788888899999986665 33333322334444332 33444444333000 000010 01111122
Q ss_pred chHHHHHHHccCCe-EEEEEcCCCCh-----hhHhHhhhhCCCCCCCcEEEEEecch
Q 048834 256 SPQTVVHNYLIHKR-YLVILTDVRTP-----DIWEIIKFLFPNSLSGSRVILSFREA 306 (1108)
Q Consensus 256 ~l~~~l~~~l~~kr-~LlVLDDVw~~-----~~~~~l~~~~~~~~~GSrIiiTTR~~ 306 (1108)
......++.+.+.+ =|||||++... -..+.+...+.......-||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 33345566665544 59999999532 22344444444444567899999975
No 245
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.21 E-value=0.14 Score=57.10 Aligned_cols=124 Identities=12% Similarity=0.088 Sum_probs=67.9
Q ss_pred CCCccCccceEeecccCC-CCCCCCCCCCcceEEEEeccCCCCCccccccccccceeeeccccccCceeeeCCCCCCccc
Q 048834 929 LNNHRALNELYLLGKLPE-PLKLDKLPPNLRILTLSLSYLSEDPMPVLGQLKELNILRLFAHSFMGEEMTCGDGGFPKLR 1007 (1108)
Q Consensus 929 ~~~l~~L~~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~ 1007 (1108)
+..+.+|+.+.+...+-. .......+++|+.+.+.. .+..-....+.++++|+.+.|..+ + ...-...+..+++|+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCCCCCC
Confidence 444566666665433210 001112235788887742 222112234678899999999643 2 111233566788999
Q ss_pred EEEeccCCCCCceee-CCCcccccceEeecccCCCCCCcccCCCCCCCEEEEe
Q 048834 1008 VLKLWVQKELREWTI-GKEAMPELRELEIRCCKKMKKPIELEKLSSLKELTLT 1059 (1108)
Q Consensus 1008 ~L~l~~~~~l~~lp~-~~~~l~~L~~L~i~~c~~l~lp~~l~~l~~L~~L~l~ 1059 (1108)
.+.|-.. ++.+.. .+.+|++|+.+.+.++.... ..+..+.+|+.+.+.
T Consensus 338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 338 RIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVA 386 (394)
T ss_dssp EEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC------
T ss_pred EEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeC
Confidence 9999533 555643 46688999999998764321 234556778777764
No 246
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.21 E-value=0.1 Score=59.13 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=33.5
Q ss_pred eeehHHHHHHHHHHhCC---------CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 366 VGLKDQLLRLAQLTMSS---------SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 366 ~g~~~~l~~i~~~l~~~---------~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
.|.+..++.+.+.+.+. ...+..+.++|.+|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 46677777777776522 123578999999999999999998765
No 247
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.18 E-value=0.039 Score=62.40 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.6
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
-|.|+|++|.||||||+++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3779999999999999999853
No 248
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.13 E-value=0.043 Score=59.28 Aligned_cols=177 Identities=18% Similarity=0.182 Sum_probs=93.6
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCc-eeEEEEeccCCCcCHHHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFE-YHAWANVDVSHDFDLRKVFINILEQ 442 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~-~~~w~~v~~s~~~~~~~l~~~il~~ 442 (1108)
+++|.+..++.+.+.+.... .+. +.++|..|+|||++|+.+..... ...+. ....++ .+.......+ .+.
T Consensus 18 ~~~g~~~~~~~l~~~l~~~~-~~~-~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~--~~~~~~~~~~-~~~--- 88 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVERKN-IPH-LLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMN--ASDERGIDVV-RHK--- 88 (319)
T ss_dssp GSCSCHHHHHHHHTTTTTTC-CCC-EEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEE--TTSTTCTTTS-SHH---
T ss_pred HHhCCHHHHHHHHHHHhCCC-CCe-EEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEe--CccccChHHH-HHH---
Confidence 46788888888777765532 233 88999999999999998866510 00000 011122 2221110000 000
Q ss_pred HhhhhhhhhhhHHHHHHHHHHH--h-cCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCchH-HHHhcCC
Q 048834 443 VTRVKIAEELALNELESRLIRL--F-QSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREAF-VARAFSP 516 (1108)
Q Consensus 443 l~~~~~~~~~~~~~l~~~l~~~--l-~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~~-v~~~~~~ 516 (1108)
....... + .+++.++++|+++. ....+.+...+. ....+..+++++.... +......
T Consensus 89 ---------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le--~~~~~~~~i~~~~~~~~l~~~l~s 151 (319)
T 2chq_A 89 ---------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME--MYSKSCRFILSCNYVSRIIEPIQS 151 (319)
T ss_dssp ---------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS--SSSSSEEEEEEESCGGGSCHHHHT
T ss_pred ---------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH--hcCCCCeEEEEeCChhhcchHHHh
Confidence 0000000 1 25678999999875 333444444443 2224566666665432 2222223
Q ss_pred CcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHH
Q 048834 517 SIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAIC 567 (1108)
Q Consensus 517 ~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~ 567 (1108)
....+.+.+++.++...++...+...... .-.+....++..++|.+..+.
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~ 201 (319)
T 2chq_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAI 201 (319)
T ss_dssp TCEEEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHH
T ss_pred hCeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 34588999999999888877654322211 112233445566777765443
No 249
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.09 E-value=0.038 Score=63.05 Aligned_cols=38 Identities=11% Similarity=0.103 Sum_probs=29.5
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.++..+...|..... .-+-|+|.+|+||||+|+.+.+
T Consensus 186 ~~~i~~l~~~l~r~~~--~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTK--NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp HHHHHHHHHHHHCSSS--CEEEEESCTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHH
Confidence 5777778888765332 2367999999999999999983
No 250
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.04 E-value=0.084 Score=53.78 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=29.9
Q ss_pred CceEeEEccCCCChhhHHHHhcCCccccc----CCcceeEEEcCCCCCHHH
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKN----HFQCRAWFLVPPRLDKRE 233 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~----~F~~~~~~~~s~~~~~~~ 233 (1108)
=.+++|+|..|+|||||++.+........ .-...+|+.-...+...+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 35799999999999999999863111111 123466776554444443
No 251
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.02 E-value=0.04 Score=56.81 Aligned_cols=93 Identities=4% Similarity=0.005 Sum_probs=51.1
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCccccc----CCcceeEEEcCCCCCHHHHHHHHHHHhCCCchh----------HHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKN----HFQCRAWFLVPPRLDKRELAINILNQFAPTDVE----------LEE 251 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~----~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~----------~~~ 251 (1108)
.=.+++|+|.+|+||||||+.+........ .-...+|+.....++..++. ++++.+...... ...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 345799999999999999998873211111 12456788776666655543 344444322100 000
Q ss_pred HhhcchHHHHHHHcc-CCeEEEEEcCCCC
Q 048834 252 KLLESPQTVVHNYLI-HKRYLVILTDVRT 279 (1108)
Q Consensus 252 ~~~~~l~~~l~~~l~-~kr~LlVLDDVw~ 279 (1108)
.........+.+.+. .+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 001111223444443 4667888998863
No 252
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.00 E-value=0.022 Score=64.98 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=20.6
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...-|-|+|.+|+|||++|+++.+
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 344588999999999999999984
No 253
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.00 E-value=0.06 Score=58.33 Aligned_cols=180 Identities=13% Similarity=0.024 Sum_probs=97.0
Q ss_pred CceeeehHHHHHHHHHHhCC---CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS---SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINI 439 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~---~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~i 439 (1108)
.+++|++..++.+...+... ...+..+.++|.+|+|||++|+.++... .. ...++. .+......++
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~--~~~~~~~~~l---- 80 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTS--GPAIEKPGDL---- 80 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEEC--TTTCCSHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEe--ccccCChHHH----
Confidence 35688888888777766531 2334578899999999999999987652 11 112222 3222211111
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCCh--hhHHHHHHHhCCCC----------------CCCCCEE
Q 048834 440 LEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLP--GAWYELQRIFSPNT----------------SSSGSRV 501 (1108)
Q Consensus 440 l~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~--~~~~~l~~~~~~~~----------------~~~~s~i 501 (1108)
...+... ..+..++++||+... .....+...+.... ...+..+
T Consensus 81 ------------------~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 81 ------------------AAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ------------------HHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ------------------HHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 1111110 135678999999763 23333433332100 0013455
Q ss_pred EEEcCchH-HHHhcCCCc-ceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHHHHHh
Q 048834 502 ILLTREAF-VARAFSPSI-ILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVLGGLL 573 (1108)
Q Consensus 502 ivttr~~~-v~~~~~~~~-~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~~~~l 573 (1108)
+.+|.... +........ .++.+..++.++...++......... ..-.+....++..+.|.|..+..+....
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55554332 111111222 57889999999988887665432211 1112344567778889987766555443
No 254
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.97 E-value=0.048 Score=55.79 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999873
No 255
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.95 E-value=0.015 Score=58.29 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 176 LAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 176 ~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.+.+......-.+|+|+|..|.|||||++.+..
T Consensus 11 ~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3343333334567899999999999999999873
No 256
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.94 E-value=0.58 Score=51.46 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=34.5
Q ss_pred CceeeehHHHHH---HHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 363 AELVGLKDQLLR---LAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 363 ~~~~g~~~~l~~---i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
.+++|.+...+. +.+.+......+..+.++|.+|+|||++|+.+...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 356888877655 44444444333468899999999999999998766
No 257
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.94 E-value=0.047 Score=57.85 Aligned_cols=153 Identities=12% Similarity=0.119 Sum_probs=80.0
Q ss_pred ceeeehHHHHHHHHHHhCC-----------CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCH
Q 048834 364 ELVGLKDQLLRLAQLTMSS-----------SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDL 432 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~-----------~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~ 432 (1108)
+++|.+..++.+...+... -..+..+.++|.+|+|||++|+.++... .. .++.+..+.....
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~-----~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NA-----TFIRVVGSELVKK 90 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TC-----EEEEEEGGGGCCC
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CC-----CEEEEehHHHHHh
Confidence 4578888888887766431 1335678899999999999999987652 11 2222112211100
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCCh-------------hhHHHHHHH---hCCCCCC
Q 048834 433 RKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLP-------------GAWYELQRI---FSPNTSS 496 (1108)
Q Consensus 433 ~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~-------------~~~~~l~~~---~~~~~~~ 496 (1108)
.. ......+...+.......+.++++||++.. .....+... +......
T Consensus 91 ----------~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 91 ----------FI------GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ----------ST------THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ----------cc------chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 001111222223333456789999998642 111222222 2101112
Q ss_pred CCCEEEEEcCchHHHH-h-cC--CCcceEecCCCChhhhHHHHhhhh
Q 048834 497 SGSRVILLTREAFVAR-A-FS--PSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 497 ~~s~iivttr~~~v~~-~-~~--~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
.+..++.||....... . .. -....+.+...+.++..+++....
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~ 201 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT 201 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH
Confidence 3456677776442211 1 11 122467788888888888876654
No 258
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.88 E-value=0.0082 Score=65.32 Aligned_cols=112 Identities=13% Similarity=0.082 Sum_probs=66.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCccee-EEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRA-WFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~-~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
.+|+|+|..|.|||||.+.+.+- +...-..++ .+...-.+..... ...+.+.. . ..........+++.|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i~t~ed~~e~~~~~~-~~~v~q~~-----~-~~~~~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHILTIEDPIEFVHESK-KCLVNQRE-----V-HRDTLGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEEEE-----B-TTTBSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEEEEccCcHHhhhhcc-ccceeeee-----e-ccccCCHHHHHHHHhh
Confidence 37999999999999999988632 222212222 2221111110000 00000000 0 0012344557899999
Q ss_pred CCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhh
Q 048834 267 HKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMH 311 (1108)
Q Consensus 267 ~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~ 311 (1108)
...=+|++|.+.+.+.++.+.... ..|.-||+||.+.+.+..
T Consensus 195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHHH
T ss_pred hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHHH
Confidence 888899999999888777655542 347779999998887743
No 259
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.78 E-value=0.018 Score=59.70 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=60.5
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEE-cCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFL-VPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYL 265 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~-~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l 265 (1108)
-.+++|+|..|+|||||++.+..- +...+...+++. ..-.+-.... ..++.+ .....+ ...+...+.+.|
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~v~q---~~~gl~---~~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQ---REVGED---TKSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSEEEE---EEBTTT---BSCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-ceeeeH---HHhCCC---HHHHHHHHHHHH
Confidence 357999999999999999998742 222223333221 1100000000 000000 000000 123456677777
Q ss_pred cCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhh
Q 048834 266 IHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAM 310 (1108)
Q Consensus 266 ~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~ 310 (1108)
..+.=+|++|...+.+....+.... ..|.-|++||.+.+++.
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 6666788889997655543333322 34778999998877554
No 260
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.74 E-value=0.022 Score=60.09 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 183 DYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 183 ~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
......+|+|+|..|+||||||+.+..
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445677899999999999999998873
No 261
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.64 E-value=0.013 Score=62.75 Aligned_cols=39 Identities=23% Similarity=0.201 Sum_probs=27.0
Q ss_pred eEeEEccCCCChhhHHHHhcCCccccc-CCcc-eeEEEcCCCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKN-HFQC-RAWFLVPPRL 229 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~-~F~~-~~~~~~s~~~ 229 (1108)
.++|+|..|+|||||++.+.+. +.. +=++ ++++-+.+..
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~--i~~~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQS--IAYNHPDCVLMVLLIDERP 216 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHH--HHHHCTTSEEEEEEESSCH
T ss_pred EEEEecCCCCChhHHHHHHHHH--HhhcCCCeeEEEEEecCCh
Confidence 5999999999999999988632 221 2232 3466677664
No 262
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.64 E-value=0.049 Score=60.60 Aligned_cols=49 Identities=16% Similarity=0.105 Sum_probs=33.7
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccC-CcceeEEEcCCCC-CHHHHHHHHH
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNH-FQCRAWFLVPPRL-DKRELAINIL 239 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~-F~~~~~~~~s~~~-~~~~l~~~i~ 239 (1108)
.++|+|..|+||||||+.+.+. ...+ -+.++++-+.+.. ...++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 4899999999999999998843 3332 3456677777664 3445555454
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.64 E-value=0.091 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.0
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
No 264
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.63 E-value=0.089 Score=56.73 Aligned_cols=57 Identities=5% Similarity=-0.026 Sum_probs=38.5
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccC----CcceeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNH----FQCRAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~----F~~~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
.-.++.|+|.+|+||||||..+......... =..++|++....++..++.+ +++.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 3457999999999999999887632111111 23567888888788777664 345544
No 265
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.55 E-value=0.092 Score=57.63 Aligned_cols=192 Identities=14% Similarity=0.122 Sum_probs=94.1
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHH
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQV 443 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l 443 (1108)
+++|.+..++.+...+..... ..+.++|..|+|||++++.+.........+.. ....+..+....... ..+.....
T Consensus 38 ~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~ 113 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISI-VREKVKNF 113 (353)
T ss_dssp TCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHH-HTTHHHHH
T ss_pred HhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHH-HHHHHHHH
Confidence 457888888888887765422 22789999999999999998765211101111 112211332222211 11111111
Q ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCch-HHHHhcCCCcce
Q 048834 444 TRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREA-FVARAFSPSIIL 520 (1108)
Q Consensus 444 ~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~-~v~~~~~~~~~~ 520 (1108)
........... ...........++++|++.. ......+...+. ......++++++... .+..........
T Consensus 114 ~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le--~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 114 ARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTME--TYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH--HTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH--hcCCCceEEEEeCchhhCcchhhccCce
Confidence 10000000000 00001123556899999764 333444444432 111345566555432 222222222347
Q ss_pred EecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHH
Q 048834 521 LQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAIC 567 (1108)
Q Consensus 521 ~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~ 567 (1108)
+.+.+++.++....+...+...... .-.+....++..+.|.+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGI 232 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 7888999998888877654322111 112344566777888776543
No 266
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.52 E-value=0.0093 Score=59.85 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=58.6
Q ss_pred CceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHcc
Q 048834 187 PLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLI 266 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 266 (1108)
-.++-|+|..|+||||+|-.+.. +...+-..++.+.-..+ .. ...++++.++.............+...+++.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 35788999999999998866552 23333223333332221 11 112334443322111111112233344454444
Q ss_pred CCeE-EEEEcCCCC--hhhHhHhhhhCCCCCCCcEEEEEecchhh
Q 048834 267 HKRY-LVILTDVRT--PDIWEIIKFLFPNSLSGSRVILSFREADA 308 (1108)
Q Consensus 267 ~kr~-LlVLDDVw~--~~~~~~l~~~~~~~~~GSrIiiTTR~~~V 308 (1108)
+.++ +||+|.+-. .++.+.+....+ .|-.||+|-++.+.
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKNF 128 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBCT
T ss_pred CCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccccc
Confidence 4444 999999863 345555543222 27889999986553
No 267
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.51 E-value=0.11 Score=50.52 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=36.5
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
.+++|++..++.+.+.+.... +..+.++|..|+|||++|+.+...
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999998886642 345689999999999999988765
No 268
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.46 E-value=0.44 Score=49.77 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=31.7
Q ss_pred eeeehHHHHHHHH-------HHhCC-CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 365 LVGLKDQLLRLAQ-------LTMSS-SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 365 ~~g~~~~l~~i~~-------~l~~~-~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
++|....++.+.. .+... ...+..+.++|.+|+|||++|+.++..
T Consensus 35 ~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4566555554444 33222 445788999999999999999998775
No 269
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.37 E-value=0.19 Score=56.68 Aligned_cols=164 Identities=17% Similarity=0.229 Sum_probs=85.0
Q ss_pred HHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCce--eEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhH
Q 048834 377 QLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEY--HAWANVDVSHDFDLRKVFINILEQVTRVKIAEELAL 454 (1108)
Q Consensus 377 ~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~--~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~ 454 (1108)
..+....+.+..+.++|.+|+|||++|+.+++. +...+.. ..+++ ...+..++...+... ..
T Consensus 121 ~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~--------~~~~~~~~~~~~~~~------~~ 184 (440)
T 2z4s_A 121 LEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYIT--------SEKFLNDLVDSMKEG------KL 184 (440)
T ss_dssp HHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEE--------HHHHHHHHHHHHHTT------CH
T ss_pred HHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee--------HHHHHHHHHHHHHcc------cH
Confidence 334444333667889999999999999999875 3332222 23333 122233333333211 11
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCCh----hhHHHHHHHhCCCCCCCCCEEEEEcCch---------HHHHhcCCCcceE
Q 048834 455 NELESRLIRLFQSKRYLIVLDDVHLP----GAWYELQRIFSPNTSSSGSRVILLTREA---------FVARAFSPSIILL 521 (1108)
Q Consensus 455 ~~l~~~l~~~l~~k~~llvlDdv~~~----~~~~~l~~~~~~~~~~~~s~iivttr~~---------~v~~~~~~~~~~~ 521 (1108)
..+...+..+..++++||++.. ...+.+...+.. ....+..+++++... .+...+. ...++
T Consensus 185 ----~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~-l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i 258 (440)
T 2z4s_A 185 ----NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNE-LHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVA 258 (440)
T ss_dssp ----HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHH-HHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCC
T ss_pred ----HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHH-HHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEE
Confidence 1223333436779999998642 222333333210 012567788877652 2222221 12467
Q ss_pred ecCCCChhhhHHHHhhhhcC---cCCchHHHHHHHHHHHHcCCchhHH
Q 048834 522 QLRPLNVDESWELFLKKVGR---EKRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 522 ~~~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
.+.+++.++...++...+.. ...... ...++..+.|.+..+
T Consensus 259 ~l~~p~~e~r~~iL~~~~~~~~~~i~~e~----l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 259 KLEPPDEETRKSIARKMLEIEHGELPEEV----LNFVAENVDDNLRRL 302 (440)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHTCCCCTTH----HHHHHHHCCSCHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHH----HHHHHHhcCCCHHHH
Confidence 78888888888877665421 111222 234555666665433
No 270
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.36 E-value=0.24 Score=53.84 Aligned_cols=175 Identities=17% Similarity=0.100 Sum_probs=92.4
Q ss_pred CceeeehHHHHHHHHHHhCC---CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSS---SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINI 439 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~---~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~i 439 (1108)
.+++|.+..++.+...+... ...+..+.++|.+|+|||++|+.+... .... ++.+.........
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~-----~~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE--MSAN-----IKTTAAPMIEKSG------ 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC-----EEEEEGGGCCSHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC-----eEEecchhccchh------
Confidence 35689998888888777642 334556889999999999999998655 2111 2221122111110
Q ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCC----------------CCCCCEE
Q 048834 440 LEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNT----------------SSSGSRV 501 (1108)
Q Consensus 440 l~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~----------------~~~~s~i 501 (1108)
.+...+.. ..+..++++|++.. ......+...+.... ..++..+
T Consensus 96 ----------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 96 ----------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ----------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ----------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111111 24567889999875 333334444332111 0012445
Q ss_pred EEEcCchH-HHHhcCCC-cceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHHH
Q 048834 502 ILLTREAF-VARAFSPS-IILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICVL 569 (1108)
Q Consensus 502 ivttr~~~-v~~~~~~~-~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~~ 569 (1108)
+.+|.... +....... ...+.+..++.++...++......... ..-......+...+.|.|..+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 55444322 11111112 367899999999988887665432111 111223344555677777544433
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.23 E-value=0.11 Score=56.38 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=42.6
Q ss_pred HHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccccc----CCcceeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 176 LAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKN----HFQCRAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 176 ~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~----~F~~~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
+..+|..+=+.-.++.|+|.+|+||||||..+........ .=..++|++....++..++.. ++..+.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3344433334456899999999999999988773211111 123577998888888777654 344443
No 272
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.18 E-value=0.065 Score=59.40 Aligned_cols=51 Identities=18% Similarity=0.161 Sum_probs=37.7
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQ 241 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~ 241 (1108)
++|+|..|+|||||++.+.+. ..+.+-+.++|+-+.+.. .+.++..++.+.
T Consensus 156 ~~Ifgg~G~GKT~L~~~i~~~-~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 156 IGLFGGAGVGKTVLIMELINN-VAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp EEEEECTTSSHHHHHHHHHHH-TTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eeeecCCCCChHHHHHHHHHh-hHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 899999999999999888742 123345677888888775 456677777654
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.18 E-value=0.019 Score=56.72 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=20.3
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|+.|+|||||++.+..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999974
No 274
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.17 E-value=0.058 Score=66.85 Aligned_cols=38 Identities=11% Similarity=0.250 Sum_probs=30.1
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.+...++..|...... -+.++|.+|+||||+|+.+.+
T Consensus 176 ~~~i~~l~~~l~~~~~~--~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 176 DEEIRRVIQILLRRTKN--NPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp HHHHHHHHHHHHCSSCC--CCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC--ceEEEcCCCCCHHHHHHHHHH
Confidence 57777888887664432 378999999999999999984
No 275
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.13 E-value=0.057 Score=62.81 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=21.4
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.++.++|..|+||||||+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999984
No 276
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.12 E-value=0.2 Score=54.96 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=53.8
Q ss_pred cCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCch-HHHHhcCCCcceEecCCCChhhhHHHHhhhhcCc
Q 048834 466 QSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREA-FVARAFSPSIILLQLRPLNVDESWELFLKKVGRE 542 (1108)
Q Consensus 466 ~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~-~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~ 542 (1108)
..+.-++++|++.. ....+.+...+.. ...+..+++++... .+..........+++.+++.++....+...+...
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~--~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEK--YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHH--STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHh--hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHc
Confidence 34677999999876 3334445444431 11456677666543 2333333445788999999998888876654221
Q ss_pred CCchHHHHHHHHHHHHcCCchhHH
Q 048834 543 KRASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 543 ~~~~~~~~~~~~i~~~~~glPlal 566 (1108)
.......+....+++.++|-+..+
T Consensus 210 ~~~~~~~~~l~~i~~~~~G~~r~a 233 (354)
T 1sxj_E 210 RIQLETKDILKRIAQASNGNLRVS 233 (354)
T ss_dssp TCEECCSHHHHHHHHHHTTCHHHH
T ss_pred CCCCCcHHHHHHHHHHcCCCHHHH
Confidence 110000122344556667665433
No 277
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.11 E-value=0.56 Score=50.33 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=33.3
Q ss_pred ceeeehHHHHHHHHHHhC---------C-CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS---------S-SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~---------~-~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
++.|.+...+.+...+.. . ...+..+.++|.+|+|||++|+.+++.
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 346777777766665531 1 123478899999999999999998765
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.05 E-value=0.02 Score=55.42 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=19.8
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|+.|+||||+|+.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 279
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.04 E-value=0.066 Score=57.85 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=49.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhH---HHHhhcchHHHHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVEL---EEKLLESPQTVVH 262 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~---~~~~~~~l~~~l~ 262 (1108)
.=+++.|+|.+|+||||||.++.. .....=..++|+.....++.. .++.+....... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 346799999999999999998873 233322345688776666654 334443221100 0011222223334
Q ss_pred HHcc-CCeEEEEEcCCCC
Q 048834 263 NYLI-HKRYLVILTDVRT 279 (1108)
Q Consensus 263 ~~l~-~kr~LlVLDDVw~ 279 (1108)
..++ .+.-++|+|.|-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 3333 4455888898754
No 280
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.03 E-value=0.039 Score=54.91 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=26.7
Q ss_pred hhhHHHhhhcC-CCCCceEeEEccCCCChhhHHHHhc
Q 048834 173 VKGLAELILSD-YPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 173 ~~~~~~~l~~~-~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+.+.+.+... .....+|+|+|..|+||||+++.+.
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34455544432 3455789999999999999999987
No 281
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.02 E-value=0.022 Score=55.10 Aligned_cols=21 Identities=10% Similarity=-0.122 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|.|+.|+||||+|+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999987
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.99 E-value=0.022 Score=56.65 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=20.1
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-.+|.|+|+.|+||||+|+.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 283
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.97 E-value=0.025 Score=54.58 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.7
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 4699999999999999998764
No 284
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.96 E-value=0.41 Score=50.83 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=34.8
Q ss_pred ceeeehHHHHHHHHHHhC---------C-CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS---------S-SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~---------~-~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+...+.+.+.+.. . ...+..+.++|.+|+|||++|+.++..
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 457888888887776632 1 123568899999999999999998765
No 285
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.93 E-value=0.34 Score=46.91 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCChHHHHHHHHhcC
Q 048834 386 YFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 386 ~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
...+.++|..|+||||+++.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998765
No 286
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.91 E-value=0.36 Score=51.95 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=35.0
Q ss_pred ceeeehHHHHHHHHHHh---------CC-CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTM---------SS-SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~---------~~-~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+...+.+...+. .. ...+..+.++|.+|+|||++|+.+++.
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45788888888777662 11 223567899999999999999999765
No 287
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.89 E-value=0.024 Score=55.16 Aligned_cols=21 Identities=5% Similarity=-0.088 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|+|+.|+||||+|+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 288
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.87 E-value=0.024 Score=55.21 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
++++|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999974
No 289
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.86 E-value=0.16 Score=62.14 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=34.0
Q ss_pred CceeeehHHHHHHHHHHhCC------CCce-EEEEEEcCCCChHHHHHHHHhcC
Q 048834 363 AELVGLKDQLLRLAQLTMSS------SSKY-FLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~------~~~~-~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
..++|.+..++.+...+... .+.| ..+.++|.+|+|||++|+.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 34677777777776666432 1223 46889999999999999998765
No 290
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.81 E-value=0.12 Score=55.70 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=60.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAINILNQFAPTDVELEEKLLESPQTVVHNYLIH 267 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 267 (1108)
.+++|+|..|.|||||++.+..- +.. -...+.+.-........ . ......-...-......+.+.|..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~~~-~~g~i~i~~~~e~~~~~--------~-~~~i~~~~ggg~~~r~~la~aL~~ 239 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--IPK-EERIISIEDTEEIVFKH--------H-KNYTQLFFGGNITSADCLKSCLRM 239 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--SCT-TSCEEEEESSCCCCCSS--------C-SSEEEEECBTTBCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CcC-CCcEEEECCeecccccc--------c-hhEEEEEeCCChhHHHHHHHHhhh
Confidence 35999999999999999999843 221 23344443222111000 0 000000000122344567788888
Q ss_pred CeEEEEEcCCCChhhHhHhhhhCCCCCCCc-EEEEEecchhhhh
Q 048834 268 KRYLVILTDVRTPDIWEIIKFLFPNSLSGS-RVILSFREADAAM 310 (1108)
Q Consensus 268 kr~LlVLDDVw~~~~~~~l~~~~~~~~~GS-rIiiTTR~~~Va~ 310 (1108)
+.=+|+||.+.+.+.++.+.... .|. -+|+||...++..
T Consensus 240 ~p~ilildE~~~~e~~~~l~~~~----~g~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 240 RPDRIILGELRSSEAYDFYNVLC----SGHKGTLTTLHAGSSEE 279 (330)
T ss_dssp CCSEEEECCCCSTHHHHHHHHHH----TTCCCEEEEEECSSHHH
T ss_pred CCCEEEEcCCChHHHHHHHHHHh----cCCCEEEEEEcccHHHH
Confidence 88889999999876676655432 233 3777877766544
No 291
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.75 E-value=0.19 Score=53.90 Aligned_cols=46 Identities=28% Similarity=0.368 Sum_probs=32.6
Q ss_pred ceeeehHHHHHHHHHHhC-------------CCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS-------------SSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~-------------~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+...+.+.+.+.. ....+..+.++|.+|+|||++|+.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346777777766655431 1233457889999999999999877655
No 292
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.68 E-value=0.26 Score=56.96 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=96.5
Q ss_pred CceeeehHHHHHHHHHHhCC---------------CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccC
Q 048834 363 AELVGLKDQLLRLAQLTMSS---------------SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVS 427 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~---------------~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s 427 (1108)
.+++|.+..++.+..++... .+.+..+.++|.+|+|||++|+.+++.. ....+.+..+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-------~~~~i~in~s 111 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-------GYDILEQNAS 111 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-------TCEEEEECTT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-------CCCEEEEeCC
Confidence 45789999999998888651 0235789999999999999999987762 1123332244
Q ss_pred CCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH--HhcCCceEEEEeCCCCh-----hhHHHHHHHhCCCCCCCCCE
Q 048834 428 HDFDLRKVFINILEQVTRVKIAEELALNELESRLIR--LFQSKRYLIVLDDVHLP-----GAWYELQRIFSPNTSSSGSR 500 (1108)
Q Consensus 428 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~--~l~~k~~llvlDdv~~~-----~~~~~l~~~~~~~~~~~~s~ 500 (1108)
...... +....+....... +.......... ....++.++++|+++.. ..+..+...+.. .+..
T Consensus 112 ~~~~~~-~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~----~~~~ 181 (516)
T 1sxj_A 112 DVRSKT-LLNAGVKNALDNM-----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK----TSTP 181 (516)
T ss_dssp SCCCHH-HHHHTGGGGTTBC-----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH----CSSC
T ss_pred CcchHH-HHHHHHHHHhccc-----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh----cCCC
Confidence 333222 1111111110000 00000000000 01356789999998642 123334433321 1233
Q ss_pred EEEEcCchH--HHHhcCCCcceEecCCCChhhhHHHHhhhhcCc---CCchHHHHHHHHHHHHcCC-chhHHHHHHH
Q 048834 501 VILLTREAF--VARAFSPSIILLQLRPLNVDESWELFLKKVGRE---KRASELLNLKEKIWKKCGG-LPLAICVLGG 571 (1108)
Q Consensus 501 iivttr~~~--v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~---~~~~~~~~~~~~i~~~~~g-lPlal~~~~~ 571 (1108)
+++++.... ...........+.+..++.++..+.+...+... ..... ...+++.+.| ++.++..+..
T Consensus 182 iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~----l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 182 LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNV----IDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTH----HHHHHHHTTTCHHHHHHHHTH
T ss_pred EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHcCCcHHHHHHHHHH
Confidence 444443321 111223334578889999999888776544221 11222 3445666777 4555555443
No 293
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.66 E-value=0.24 Score=54.16 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=35.6
Q ss_pred ceeeehHHHHHHHHHHhC----------CCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS----------SSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~----------~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+..++.+.+.+.. ....+..+.++|..|+|||++|+.++..
T Consensus 85 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 85 DIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 457888888887776642 1234678899999999999999998765
No 294
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.60 E-value=0.029 Score=54.73 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.8
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999999973
No 295
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.58 E-value=0.03 Score=59.78 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.6
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
++.+||+|.|-|||||||.|-.+-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA 69 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLS 69 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHH
Confidence 367899999999999999987665
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.51 E-value=0.038 Score=53.52 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=20.1
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-.+|+|+|+.|+||||+|+.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 297
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.50 E-value=0.12 Score=55.71 Aligned_cols=57 Identities=9% Similarity=-0.017 Sum_probs=38.9
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCccccc---------CC-----cceeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKN---------HF-----QCRAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~---------~F-----~~~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
.-+++-|+|.+|+||||||..+.-...... .. ..++|++....++..++.+ +++.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 446799999999999999987762211111 11 3567888888888887764 345544
No 298
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.50 E-value=0.1 Score=63.74 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=29.8
Q ss_pred hhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 170 NDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+.+.+.+...|...... -+-++|.+|+||||+|+.+.+
T Consensus 186 ~~~i~~l~~~l~~~~~~--~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKN--NPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp HHHHHHHHHHHHCSSSC--EEEEESCTTTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCC--CeEEECCCCCCHHHHHHHHHH
Confidence 67778888888654332 367999999999999999873
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.47 E-value=0.031 Score=54.75 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=19.7
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|+|+.|+||||+|+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999997
No 300
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.45 E-value=0.89 Score=48.24 Aligned_cols=46 Identities=28% Similarity=0.325 Sum_probs=33.8
Q ss_pred ceeeehHHHHHHHHHHhC-----------CCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS-----------SSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~-----------~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+...+.+...+.. .-..+..+.++|.+|+|||++|+.++..
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 356777777776665542 1123567889999999999999998875
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.44 E-value=0.029 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.266 Sum_probs=20.5
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999873
No 302
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.43 E-value=0.032 Score=54.91 Aligned_cols=21 Identities=10% Similarity=0.060 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+++|+|+.|+|||||++.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 369999999999999999997
No 303
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.42 E-value=0.032 Score=55.50 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.1
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+|+|+|+.|.||||+|+.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999973
No 304
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.40 E-value=1.1 Score=49.54 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=22.2
Q ss_pred CCCeeEEEEeCCCCCCCCch-hhcCCCCccEEecCCccccccccccCCCCCCcEEeccC
Q 048834 759 GYRLLRVLDLEGVYKPVLPE-TVGKLQLLRYFGLRWTFLDSIPESVGDLPCLETLDLKH 816 (1108)
Q Consensus 759 ~l~~Lr~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~L~~ 816 (1108)
+|.+|+.+.|..+ +..+++ .+.++ +|+.+.+.. .+..++.......+|+.+.+..
T Consensus 67 ~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 67 SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 4455555555433 333322 23333 344444322 1333333322233455555543
No 305
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.32 E-value=0.095 Score=53.75 Aligned_cols=164 Identities=12% Similarity=0.096 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhh
Q 048834 370 DQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIA 449 (1108)
Q Consensus 370 ~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~ 449 (1108)
..++.+...+... ....+.++|.+|+|||++|+.++... ........++. .+...+. +.
T Consensus 38 ~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~--~~~~~~~~~~~--~~~~~~~----------~~----- 96 (242)
T 3bos_A 38 ELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARA--NELERRSFYIP--LGIHASI----------ST----- 96 (242)
T ss_dssp HHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEE--GGGGGGS----------CG-----
T ss_pred HHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE--HHHHHHH----------HH-----
Confidence 4445555544432 34578899999999999999987652 22222334554 2221100 00
Q ss_pred hhhhHHHHHHHHHHHhcCCceEEEEeCCCChh--h--HHHHHHHhCCCCCCCC-CEEEEEcCchH---------HHHhcC
Q 048834 450 EELALNELESRLIRLFQSKRYLIVLDDVHLPG--A--WYELQRIFSPNTSSSG-SRVILLTREAF---------VARAFS 515 (1108)
Q Consensus 450 ~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~--~--~~~l~~~~~~~~~~~~-s~iivttr~~~---------v~~~~~ 515 (1108)
. .+ +.+ .+..++++||++... . .+.+...+.. ....+ .++++++.... +...+.
T Consensus 97 ~---------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 97 A---------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNR-VAEQKRGSLIVSASASPMEAGFVLPDLVSRMH 164 (242)
T ss_dssp G---------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHH-HHHHCSCEEEEEESSCTTTTTCCCHHHHHHHH
T ss_pred H---------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHH-HHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhh
Confidence 0 00 001 345688999986421 1 2223332210 00022 24666665321 111110
Q ss_pred CCcceEecCCCChhhhHHHHhhhhcCcCCchHHHHHHHHHHHHcCCchhHHHH
Q 048834 516 PSIILLQLRPLNVDESWELFLKKVGREKRASELLNLKEKIWKKCGGLPLAICV 568 (1108)
Q Consensus 516 ~~~~~~~~~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPlal~~ 568 (1108)
....+.+.+++.++..+++...+..... ..-.+....+...+.|.+..+..
T Consensus 165 -~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~ 215 (242)
T 3bos_A 165 -WGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFD 215 (242)
T ss_dssp -HSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHH
T ss_pred -cCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHH
Confidence 1157889999999988888765432111 11122334556667776654443
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.32 E-value=0.032 Score=54.70 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.0
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999983
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.29 E-value=0.038 Score=52.50 Aligned_cols=23 Identities=22% Similarity=-0.023 Sum_probs=20.6
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|+|..|+|||||+..+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999988
No 308
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.27 E-value=0.039 Score=55.20 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999974
No 309
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.27 E-value=0.035 Score=53.76 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.6
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 310
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.24 E-value=0.035 Score=55.46 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=20.0
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4799999999999999999873
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.21 E-value=0.095 Score=57.55 Aligned_cols=112 Identities=14% Similarity=0.053 Sum_probs=62.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCccee-EEEcCCCCCHHHHHHHHHHH--hCCCchhHHHHhhcchHHHHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRA-WFLVPPRLDKRELAINILNQ--FAPTDVELEEKLLESPQTVVH 262 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~-~~~~s~~~~~~~l~~~i~~~--~~~~~~~~~~~~~~~l~~~l~ 262 (1108)
.-.+|+|+|..|+||||+++.+..- +.......+ ++...-.+....- ..++.| +.. +...+...++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~~~e~~~~~~-~~~v~Q~~~g~--------~~~~~~~~l~ 203 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSIVNQREVGE--------DTKSFADALR 203 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEESSCCSCCCCS-SSEEEEEEBTT--------TBSCSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecccHhhhhccC-ceEEEeeecCC--------CHHHHHHHHH
Confidence 3457999999999999999988732 222212222 2221111000000 000000 000 1233456688
Q ss_pred HHccCCeEEEEEcCCCChhhHhHhhhhCCCCCCCcEEEEEecchhhhhh
Q 048834 263 NYLIHKRYLVILTDVRTPDIWEIIKFLFPNSLSGSRVILSFREADAAMH 311 (1108)
Q Consensus 263 ~~l~~kr~LlVLDDVw~~~~~~~l~~~~~~~~~GSrIiiTTR~~~Va~~ 311 (1108)
..|....=+|++|.+.+.+......... ..|.-|+.|+.+.++...
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~~~~~ 249 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTAIDT 249 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCSHHHH
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcchHHHH
Confidence 8887777789999998766654433322 357778889888775543
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.21 E-value=0.037 Score=53.20 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=19.8
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|.|+.|+||||+|+.+-
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999987
No 313
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.19 E-value=0.63 Score=51.58 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=34.5
Q ss_pred ceeeehHHHHHHHHHHhC----------CCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS----------SSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~----------~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+...+.+...+.. ....+..+.++|..|+|||++|+.+...
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 347888888887776621 1123568899999999999999998665
No 314
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.19 E-value=0.11 Score=56.50 Aligned_cols=45 Identities=13% Similarity=0.032 Sum_probs=32.6
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR 232 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~ 232 (1108)
.-+++.|+|.+|+||||||.++.. .....=..++|++....++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE 104 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH
Confidence 346799999999999999988873 233322456788887766653
No 315
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.18 E-value=0.28 Score=54.05 Aligned_cols=68 Identities=9% Similarity=-0.027 Sum_probs=40.4
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCccccc----CCcceeEEEcCCCCCHHHHHHHHHHHhC
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKN----HFQCRAWFLVPPRLDKRELAINILNQFA 243 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~----~F~~~~~~~~s~~~~~~~l~~~i~~~~~ 243 (1108)
.+..+|..+=..=.++.|+|..|+|||||+..+.-...... .-...+|+.....+...++.. +.+.+.
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~g 237 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFG 237 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcC
Confidence 33344433323446799999999999999996541111111 223577888776676665433 555554
No 316
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.18 E-value=0.036 Score=55.35 Aligned_cols=20 Identities=10% Similarity=0.067 Sum_probs=18.9
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
+|+|+|+.|+||||+|+.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999999987
No 317
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.14 E-value=0.15 Score=56.70 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=38.5
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCC-CHHHHHHHHHHH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRL-DKRELAINILNQ 241 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~-~~~~l~~~i~~~ 241 (1108)
++|.|..|+|||||++.+.+. ..+.+-+.++|+-+.+.. .+.++..++.+.
T Consensus 168 ~gIfgg~GvGKT~L~~~l~~~-~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 168 IGLFGGAGVGKTVLIMELINN-IAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp EEEEECSSSSHHHHHHHHHHH-TTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred EEeecCCCCCchHHHHHHHHH-HHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 899999999999999888742 123456788899888876 455677777654
No 318
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.08 E-value=0.12 Score=56.36 Aligned_cols=45 Identities=11% Similarity=-0.022 Sum_probs=32.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR 232 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~ 232 (1108)
.-+++-|+|.+|+||||||..+.. .....=..++|++....++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV 117 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH
Confidence 345788999999999999987763 233333467888887776654
No 319
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.06 E-value=0.039 Score=67.60 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=19.3
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+-++|..|+|||++|+++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999984
No 320
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.03 E-value=0.038 Score=53.85 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=19.9
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|+|+.|+||||+|+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999999999987
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.99 E-value=0.044 Score=54.55 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|+|+.|+||||+|+.+-
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.97 E-value=0.04 Score=55.08 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.0
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|+.|+||||+++.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999873
No 323
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.97 E-value=0.039 Score=53.47 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=18.8
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
+|.|+|+.|+||||+|+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 59999999999999999997
No 324
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.95 E-value=0.24 Score=53.77 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=35.3
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCCcccccCC---c-ceeEEEcCCCCCHHHHHHHHHHHh
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSCDDIKNHF---Q-CRAWFLVPPRLDKRELAINILNQF 242 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F---~-~~~~~~~s~~~~~~~l~~~i~~~~ 242 (1108)
+.=+++.|+|..|+|||||+..+.......... . .++|+.....+...++ ..+.+..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 345689999999999999999887321111111 2 3478877655554443 3344443
No 325
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.95 E-value=0.04 Score=55.31 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=21.0
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+|+|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999873
No 326
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.95 E-value=0.041 Score=55.02 Aligned_cols=22 Identities=14% Similarity=0.006 Sum_probs=19.8
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|+.|+||||+++.+-.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999963
No 327
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.94 E-value=0.039 Score=54.01 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=18.8
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
+|.|+|+.|+||||+|+.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999987
No 328
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.93 E-value=0.095 Score=57.74 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=51.3
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCc----ceeEEEcCCCC-CHHHHHHHHHHH--hCCC--------chhHHHHhh
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQ----CRAWFLVPPRL-DKRELAINILNQ--FAPT--------DVELEEKLL 254 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~----~~~~~~~s~~~-~~~~l~~~i~~~--~~~~--------~~~~~~~~~ 254 (1108)
++|.|..|+|||||+..|.+... .+-+ .++|+-+.+.. .+.++..++.+. +... .........
T Consensus 154 ~~Ifgg~G~GKt~L~~~Ia~~~~--~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 154 LPVFSGSGLPHKELAAQIARQAT--VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCB--CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred EEEeCCCCcChHHHHHHHHHHHH--hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 79999999999999998886532 2223 56677777664 445566665443 1000 000000000
Q ss_pred cchHHHHHHHcc---CCeEEEEEcCCCC
Q 048834 255 ESPQTVVHNYLI---HKRYLVILTDVRT 279 (1108)
Q Consensus 255 ~~l~~~l~~~l~---~kr~LlVLDDVw~ 279 (1108)
-.....+.++++ +|.+||++||+-.
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 011122445543 7899999999865
No 329
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.92 E-value=0.84 Score=49.10 Aligned_cols=131 Identities=20% Similarity=0.322 Sum_probs=66.2
Q ss_pred ceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 048834 385 KYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVTRVKIAEELALNELESRLIRL 464 (1108)
Q Consensus 385 ~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~ 464 (1108)
.+..+.++|.+|+|||++|+.+++.. ...-....+++ ...+...+...+... ....+ ...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~--------~~~~~~~~~~~~~~~------~~~~~----~~~ 95 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSS--------ADDFAQAMVEHLKKG------TINEF----RNM 95 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEE--------HHHHHHHHHHHHHHT------CHHHH----HHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEE--------HHHHHHHHHHHHHcC------cHHHH----HHH
Confidence 45578899999999999999988752 11111223333 122222332222210 11111 122
Q ss_pred hcCCceEEEEeCCCChh----hHHHHHHHhCCCCCCCCCEEEEEcCch---------HHHHhcCCCcceEecCCCChhhh
Q 048834 465 FQSKRYLIVLDDVHLPG----AWYELQRIFSPNTSSSGSRVILLTREA---------FVARAFSPSIILLQLRPLNVDES 531 (1108)
Q Consensus 465 l~~k~~llvlDdv~~~~----~~~~l~~~~~~~~~~~~s~iivttr~~---------~v~~~~~~~~~~~~~~~L~~~~~ 531 (1108)
+. +..++++||+.... ..+.+...+.. ....+..+++++... .+...+. ...++.+.+ +.++.
T Consensus 96 ~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~-~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~-~~~~i~l~~-~~~e~ 171 (324)
T 1l8q_A 96 YK-SVDLLLLDDVQFLSGKERTQIEFFHIFNT-LYLLEKQIILASDRHPQKLDGVSDRLVSRFE-GGILVEIEL-DNKTR 171 (324)
T ss_dssp HH-TCSEEEEECGGGGTTCHHHHHHHHHHHHH-HHHTTCEEEEEESSCGGGCTTSCHHHHHHHH-TSEEEECCC-CHHHH
T ss_pred hc-CCCEEEEcCcccccCChHHHHHHHHHHHH-HHHCCCeEEEEecCChHHHHHhhhHhhhccc-CceEEEeCC-CHHHH
Confidence 22 36689999986532 22233332210 011455677776532 1221111 124678888 88888
Q ss_pred HHHHhhhh
Q 048834 532 WELFLKKV 539 (1108)
Q Consensus 532 ~~lf~~~~ 539 (1108)
..++...+
T Consensus 172 ~~il~~~~ 179 (324)
T 1l8q_A 172 FKIIKEKL 179 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776554
No 330
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.92 E-value=0.14 Score=46.32 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=28.8
Q ss_pred EEecCCcccc--ccccccCCCCCCcEEeccCCcCccCChh-hccccccCEEEecccc
Q 048834 788 YFGLRWTFLD--SIPESVGDLPCLETLDLKHTNITSLPKS-IWKVKTLRHLYMNDIY 841 (1108)
Q Consensus 788 ~L~l~~~~i~--~lp~~i~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 841 (1108)
+++.++..++ .+|..+. .+|++|+|++|.|+.+|.+ +..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455555555 5554332 3466666666666666554 3456666666666553
No 331
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.88 E-value=0.042 Score=55.95 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=19.6
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|+|+|+.|+||||+|+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999986
No 332
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.88 E-value=0.04 Score=54.98 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=21.0
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+|.|+|+.|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999873
No 333
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.85 E-value=0.016 Score=56.66 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=25.5
Q ss_pred HccCCeEEEEEcCCCCh--hhHhHhhhhCCCCCCCcEEEEEecchh
Q 048834 264 YLIHKRYLVILTDVRTP--DIWEIIKFLFPNSLSGSRVILSFREAD 307 (1108)
Q Consensus 264 ~l~~kr~LlVLDDVw~~--~~~~~l~~~~~~~~~GSrIiiTTR~~~ 307 (1108)
.+.++.-+|++|.+-.. ++++.+....+ .|..||+|.++.+
T Consensus 72 ~~~~~~dvviIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 72 YIEEDTRGVFIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDLT 114 (184)
T ss_dssp GCCTTEEEEEECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESBC
T ss_pred HhcCCCCEEEEECcccCCHHHHHHHHHHHH---CCCCEEEEeeccc
Confidence 34445668999998653 33344433322 2788999988654
No 334
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.83 E-value=0.07 Score=59.27 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=22.1
Q ss_pred CCCceEeEEccCCCChhhHHHHhcCC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
...+-|-++|++|.|||+||++|.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34566889999999999999999854
No 335
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.81 E-value=0.042 Score=54.44 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999973
No 336
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.80 E-value=0.044 Score=53.95 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.8
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 337
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.79 E-value=0.044 Score=54.67 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=19.2
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999973
No 338
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.76 E-value=0.046 Score=53.41 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.9
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-.+|+|+|+.|+||||+|+.+.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999886
No 339
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.75 E-value=0.044 Score=54.04 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.7
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999973
No 340
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.73 E-value=0.047 Score=53.50 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=21.2
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
....+|+|.|+.|+||||+|+.+-
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
No 341
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.70 E-value=0.047 Score=54.64 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=20.7
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.+|+|+|+.|+|||||++.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999999984
No 342
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.64 E-value=0.53 Score=51.36 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=33.5
Q ss_pred ceeeehHHHHHHHHHHh---------CC-CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTM---------SS-SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~---------~~-~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+...+.+...+. .. ...+..+.++|..|+|||++|+.+++.
T Consensus 52 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 52 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 35688877777776652 11 122456889999999999999998876
No 343
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.63 E-value=0.26 Score=53.22 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=76.1
Q ss_pred CceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHH
Q 048834 363 AELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQ 442 (1108)
Q Consensus 363 ~~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~ 442 (1108)
.+++|.+...+.+.+.+... ..|..+.+.|.+|+|||++|+.+.+.. . ..+..+..+. .... .....+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l--~-----~~~~~i~~~~-~~~~-~i~~~~~~ 95 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDV--N-----ADMMFVNGSD-CKID-FVRGPLTN 95 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHT--T-----EEEEEEETTT-CCHH-HHHTHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHh--C-----CCEEEEcccc-cCHH-HHHHHHHH
Confidence 45678888888888877643 344566677779999999999987652 1 1222211322 1111 11111111
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCChh---hHHHHHHHhCCCCCCCCCEEEEEcCchH-HHHhcCCCc
Q 048834 443 VTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLPG---AWYELQRIFSPNTSSSGSRVILLTREAF-VARAFSPSI 518 (1108)
Q Consensus 443 l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~~---~~~~l~~~~~~~~~~~~s~iivttr~~~-v~~~~~~~~ 518 (1108)
.... ..+.++..++++||++... ..+.+...+. ....+..+++++.... +........
T Consensus 96 ~~~~----------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le--~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 96 FASA----------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFME--AYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHB----------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHH--HHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHhh----------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHH--hCCCCcEEEEEeCCccccCHHHHhhC
Confidence 1000 0012367899999998743 3344443332 1113566777665433 111111123
Q ss_pred ceEecCCCChhhhHH
Q 048834 519 ILLQLRPLNVDESWE 533 (1108)
Q Consensus 519 ~~~~~~~L~~~~~~~ 533 (1108)
.++.+...+.++..+
T Consensus 158 ~~i~~~~~~~~e~~~ 172 (324)
T 3u61_B 158 RVITFGQPTDEDKIE 172 (324)
T ss_dssp EEEECCCCCHHHHHH
T ss_pred cEEEeCCCCHHHHHH
Confidence 467888888776433
No 344
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.59 E-value=0.059 Score=53.65 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=20.8
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|.|+.|+||||+|+.+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999987
No 345
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.55 E-value=0.06 Score=53.04 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=20.0
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|+|+.|+||||+|+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 346
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.54 E-value=1.2 Score=47.89 Aligned_cols=92 Identities=16% Similarity=0.141 Sum_probs=56.6
Q ss_pred CCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCch-HHHHhcCCCcceEecCCCChhhhHHHHhhhhcCcC
Q 048834 467 SKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREA-FVARAFSPSIILLQLRPLNVDESWELFLKKVGREK 543 (1108)
Q Consensus 467 ~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~-~v~~~~~~~~~~~~~~~L~~~~~~~lf~~~~~~~~ 543 (1108)
+++.++|+|+++. ....+.+...+. ....++.+++++... .+..........+.+.+++.++..+.+.... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lE--ep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~--~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLE--EPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV--TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHT--SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC--CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhc--CCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc--CC
Confidence 4678899999875 344555666554 222455655555443 3444444556789999999999888876654 11
Q ss_pred CchHHHHHHHHHHHHcCCchhHH
Q 048834 544 RASELLNLKEKIWKKCGGLPLAI 566 (1108)
Q Consensus 544 ~~~~~~~~~~~i~~~~~glPlal 566 (1108)
.+ +....++..++|-|..+
T Consensus 183 -~~---~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 183 -SQ---DALLAALRLSAGSPGAA 201 (334)
T ss_dssp -CH---HHHHHHHHHTTTCHHHH
T ss_pred -CH---HHHHHHHHHcCCCHHHH
Confidence 11 22244666778877544
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.54 E-value=0.048 Score=52.63 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=19.3
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|.|+.|+||||+|+.+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999987
No 348
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.52 E-value=0.049 Score=58.11 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCCceEeEEccCCCChhhHHHHhcC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..-.+|||+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456899999999999999999973
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.48 E-value=0.051 Score=56.23 Aligned_cols=21 Identities=19% Similarity=0.011 Sum_probs=19.3
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|+|+.|+||||||+.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHH
Confidence 368999999999999999987
No 350
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.48 E-value=0.051 Score=56.08 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=20.4
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|+|+|+.|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 351
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.47 E-value=0.077 Score=57.59 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=21.8
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
....+.|+|..|+||||||+.+.+.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4466999999999999999999853
No 352
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.45 E-value=0.053 Score=53.09 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.5
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.+|.|+|+.|+||||+|+.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999973
No 353
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.41 E-value=0.054 Score=54.14 Aligned_cols=22 Identities=0% Similarity=-0.046 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999873
No 354
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.38 E-value=0.16 Score=53.08 Aligned_cols=50 Identities=4% Similarity=-0.019 Sum_probs=34.5
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCC--cceeEEEcCCCCCHHHHHHHHHHHhCCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHF--QCRAWFLVPPRLDKRELAINILNQFAPT 245 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F--~~~~~~~~s~~~~~~~l~~~i~~~~~~~ 245 (1108)
++-|+|.+|+||||||-++. ......+ ..++|+..-..++... +++++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~--~~~~~~g~g~~vlyId~E~s~~~~r-----a~~lGvd 81 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMV--SSYMRQYPDAVCLFYDSEFGITPAY-----LRSMGVD 81 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHH--HHHHHHCTTCEEEEEESSCCCCHHH-----HHHTTCC
T ss_pred eEEEECCCCCCHHHHHHHHH--HHHHhcCCCceEEEEeccchhhHHH-----HHHhCCC
Confidence 68999999999999987766 3333332 3567888777777542 5555543
No 355
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.37 E-value=0.89 Score=49.29 Aligned_cols=153 Identities=16% Similarity=0.209 Sum_probs=76.4
Q ss_pred eeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCHHHHHHHHHHHHh
Q 048834 365 LVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDLRKVFINILEQVT 444 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~~~l~~~il~~l~ 444 (1108)
++|.+..++.+...+... ..|. +.++|..|+||||+++.+.... ...-.......+..+.......+ ++....+.
T Consensus 27 ~~g~~~~~~~L~~~i~~g-~~~~-~ll~Gp~G~GKTtla~~la~~l--~~~~~~~~~~~~~~~~~~~~~~i-r~~i~~~~ 101 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEG-KLPH-LLFYGPPGTGKTSTIVALAREI--YGKNYSNMVLELNASDDRGIDVV-RNQIKDFA 101 (340)
T ss_dssp CCSCHHHHHHHHHHHHTT-CCCC-EEEECSSSSSHHHHHHHHHHHH--HTTSHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred hcCcHHHHHHHHHHHhcC-CCce-EEEECCCCCCHHHHHHHHHHHH--cCCCccceEEEEcCcccccHHHH-HHHHHHHH
Confidence 457677777777766553 2233 7899999999999999886651 11000001111112222121111 11111110
Q ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCch-HHHHhcCCCcceE
Q 048834 445 RVKIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTREA-FVARAFSPSIILL 521 (1108)
Q Consensus 445 ~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~~-~v~~~~~~~~~~~ 521 (1108)
.. ...+.+..-++++|+++. ....+.+...+. .......+++++... .+..........+
T Consensus 102 ~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le--~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 102 ST---------------RQIFSKGFKLIILDEADAMTNAAQNALRRVIE--RYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HB---------------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH--HTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred hh---------------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHh--cCCCCeEEEEEecCccccchhHHhhceeE
Confidence 00 000123467889999864 334444444332 111345555554432 2222222334577
Q ss_pred ecCCCChhhhHHHHhhhh
Q 048834 522 QLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 522 ~~~~L~~~~~~~lf~~~~ 539 (1108)
.+.+++.++..+.+....
T Consensus 165 ~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVL 182 (340)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred eccCCCHHHHHHHHHHHH
Confidence 888888888777665544
No 356
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.35 E-value=0.061 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.161 Sum_probs=20.1
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|.|+.|+||||+|+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999987
No 357
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.35 E-value=0.055 Score=52.96 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=19.3
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|.|+.|+||||+|+.+.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999987
No 358
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.31 E-value=0.056 Score=53.39 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|.|+.|+||||+|+.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999886
No 359
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.27 E-value=0.059 Score=50.83 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=20.5
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
=.+++|+|..|.|||||++.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 360
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.26 E-value=0.056 Score=55.91 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=20.2
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-.+|+|+|+.|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.25 E-value=0.057 Score=53.55 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.6
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|+|.|+.|+||||+|+.+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 362
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.22 E-value=0.055 Score=54.53 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999873
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.21 E-value=0.059 Score=51.67 Aligned_cols=20 Identities=10% Similarity=-0.021 Sum_probs=18.7
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|.|.|+.|+||||+|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999987
No 364
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.21 E-value=0.19 Score=54.52 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=32.8
Q ss_pred CCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR 232 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~ 232 (1108)
.-+++-|+|.+|+||||||.++.. .....=..++|++....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHH
Confidence 345799999999999999988773 233332357788887777643
No 365
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.12 E-value=0.06 Score=55.49 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.5
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.+|||.|..|+||||||+.+..
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998863
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.09 E-value=0.053 Score=52.93 Aligned_cols=21 Identities=14% Similarity=-0.018 Sum_probs=15.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|.|+.|+||||+|+.+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999986
No 367
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.08 E-value=0.066 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=20.9
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
....+|+|.|+.|+||||+|+.+-
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999886
No 368
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.01 E-value=0.076 Score=56.52 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=21.9
Q ss_pred CCCCceEeEEccCCCChhhHHHHhc
Q 048834 184 YPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 184 ~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.....+|||.|..|+||||+|+.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3456689999999999999999886
No 369
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.97 E-value=0.062 Score=52.50 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.8
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
+++|+|..|+|||||++.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5999999999999999998843
No 370
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.89 E-value=0.08 Score=58.69 Aligned_cols=104 Identities=7% Similarity=-0.031 Sum_probs=0.0
Q ss_pred hHhhhcccccccchhhhhhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH
Q 048834 153 SEAANSNKKTGMLDFILNDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR 232 (1108)
Q Consensus 153 ~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~ 232 (1108)
++++|.++..+.+....+-....=.-.-..+-...+-|-++|++|.|||+||++|. ......|-..-.-.+-..+--.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA--~~~~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA--NSTKAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH--HHHTCEEEEEEGGGTCCSSCSH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHH--HHhCCCeEEEecchhhccccch
Q ss_pred HHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCC
Q 048834 233 ELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVR 278 (1108)
Q Consensus 233 ~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw 278 (1108)
. ...+.......-.....+|.+|+++
T Consensus 250 ~--------------------e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 250 G--------------------PRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp H--------------------HHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred h--------------------HHHHHHHHHHHHHcCCCeeechhhh
No 371
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.89 E-value=0.082 Score=52.50 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=19.8
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|+|+.|+||||+|+.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999987
No 372
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.87 E-value=0.072 Score=55.42 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=20.0
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|+|++|+||||+|+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 373
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.84 E-value=0.076 Score=55.88 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.8
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|.|+.|+||||+|+.+-
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999886
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.83 E-value=0.068 Score=52.67 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=19.6
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|+|.|+.|+||||+|+.+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 375
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.83 E-value=0.12 Score=56.59 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.2
Q ss_pred hhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhc
Q 048834 174 KGLAELILSDYPSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 174 ~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+...+........+|+|+|.+|+|||||+..+.
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 34444455555678899999999999999998875
No 376
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.82 E-value=0.072 Score=52.08 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=20.9
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999973
No 377
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.81 E-value=0.069 Score=52.68 Aligned_cols=21 Identities=29% Similarity=0.439 Sum_probs=19.3
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999973
No 378
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.78 E-value=0.083 Score=56.03 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.8
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.-.+|+|+|..|+||||+++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999999887
No 379
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.75 E-value=0.19 Score=53.92 Aligned_cols=38 Identities=26% Similarity=0.240 Sum_probs=25.8
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccc-cCCcc-eeEEEcCCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIK-NHFQC-RAWFLVPPR 228 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~-~~F~~-~~~~~~s~~ 228 (1108)
-++|+|..|+|||||++.|.+. +. ++=++ ++++-+.+.
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~--i~~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANG--IAENHPDTIRIILLIDER 216 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHH--HHHHCTTSEEEEEECSCC
T ss_pred eEEEecCCCCChhHHHHHHHHH--HhhcCCCeEEEEEEeccC
Confidence 3899999999999999988753 22 12232 245666554
No 380
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.75 E-value=0.18 Score=49.12 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCeeEEEEeCCC-CCCC-----CchhhcCCCCccEEecCCcccc-----ccccccCCCCCCcEEeccCCcCc
Q 048834 760 YRLLRVLDLEGV-YKPV-----LPETVGKLQLLRYFGLRWTFLD-----SIPESVGDLPCLETLDLKHTNIT 820 (1108)
Q Consensus 760 l~~Lr~L~L~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~L~~~~l~ 820 (1108)
-+.|+.|+|+++ .+.. +-+.+..-..|+.|+|++|.+. .|...+..-+.|++|+|++|.|.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344677777664 4432 2333444455666666665544 22233333445555555555443
No 381
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.72 E-value=0.065 Score=51.98 Aligned_cols=21 Identities=19% Similarity=0.329 Sum_probs=18.9
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
+.|.|+|+.|+|||||++.+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~ 22 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLF 22 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 348899999999999999987
No 382
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.71 E-value=0.15 Score=55.64 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=21.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
..+-|-++|++|.|||+||++|.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3455889999999999999999853
No 383
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.70 E-value=0.068 Score=54.82 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|+|+|+.|+||||+++.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999997
No 384
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.62 E-value=0.074 Score=53.35 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|.|.|+.|+||||+|+.+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999973
No 385
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.61 E-value=0.075 Score=52.85 Aligned_cols=22 Identities=18% Similarity=-0.085 Sum_probs=19.8
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999874
No 386
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.57 E-value=0.077 Score=53.91 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.9
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|.|.|+.|+||||+|+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999987
No 387
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.48 E-value=0.084 Score=53.86 Aligned_cols=22 Identities=14% Similarity=-0.021 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6799999999999999999984
No 388
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.39 E-value=0.049 Score=52.14 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999873
No 389
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.38 E-value=0.081 Score=53.41 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999985
No 390
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.37 E-value=0.089 Score=53.14 Aligned_cols=21 Identities=5% Similarity=0.215 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..|.|.|+.|+||||+|+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999987
No 391
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.37 E-value=0.24 Score=61.36 Aligned_cols=23 Identities=9% Similarity=-0.057 Sum_probs=20.3
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+-|+|..|+|||++|+.+.+
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999984
No 392
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.35 E-value=0.14 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.7
Q ss_pred CCCceEeEEccCCCChhhHHHHhcC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..-.+|+|+|..|+||||+++.+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998873
No 393
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.33 E-value=0.082 Score=53.06 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=21.1
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999874
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.31 E-value=0.071 Score=54.34 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=15.6
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|+|+|..|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.28 E-value=0.094 Score=50.89 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999973
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.27 E-value=0.084 Score=53.24 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=19.5
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|+|.|+.|+||||+|+.+-
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
No 397
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.24 E-value=0.083 Score=52.70 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=20.3
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||.+.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999853
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.21 E-value=0.049 Score=54.76 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.9
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
+|+|+|..|+||||+|+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999999987
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.19 E-value=0.086 Score=52.84 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=20.5
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999973
No 400
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.18 E-value=0.12 Score=56.84 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=50.5
Q ss_pred EeEEccCCCChhhHHHHhcCCcccc--------cCCc-ceeEEEcCCCC-CHHHHHHHHHHH--hCCC--------chhH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIK--------NHFQ-CRAWFLVPPRL-DKRELAINILNQ--FAPT--------DVEL 249 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~--------~~F~-~~~~~~~s~~~-~~~~l~~~i~~~--~~~~--------~~~~ 249 (1108)
++|.|..|+|||||+..+.+..... .+=+ .++|+-+.+.. .+.++..++.+. +... ....
T Consensus 150 ~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~ 229 (464)
T 3gqb_B 150 LPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTI 229 (464)
T ss_dssp CCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHH
Confidence 7999999999999999888653331 1112 56677777664 445555555442 1000 0000
Q ss_pred HHHhhcchHHHHHHHcc---CCeEEEEEcCCCC
Q 048834 250 EEKLLESPQTVVHNYLI---HKRYLVILTDVRT 279 (1108)
Q Consensus 250 ~~~~~~~l~~~l~~~l~---~kr~LlVLDDVw~ 279 (1108)
.....-.....+.++++ +|.+||++||+-.
T Consensus 230 ~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 230 ERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 00000011122445543 7899999999864
No 401
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.18 E-value=0.089 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4599999999999999999984
No 402
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.18 Score=55.95 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHhhhc-----------CCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHH
Q 048834 168 ILNDEVKGLAELILS-----------DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 168 ll~~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~ 236 (1108)
++++.+++|.+.+.. +-...+-|-++|++|.|||+||++|. .+....|-..-.-.+...+--..
T Consensus 213 Gl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA--~e~~~~fi~vs~s~L~sk~vGes--- 287 (467)
T 4b4t_H 213 GCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVA--NRTDATFIRVIGSELVQKYVGEG--- 287 (467)
T ss_dssp TCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHH--HHHTCEEEEEEGGGGCCCSSSHH---
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHH--hccCCCeEEEEhHHhhcccCCHH---
Q ss_pred HHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCCC
Q 048834 237 NILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVRT 279 (1108)
Q Consensus 237 ~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~ 279 (1108)
...+.......-.....+|++|+++.
T Consensus 288 -----------------ek~ir~lF~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 288 -----------------ARMVRELFEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp -----------------HHHHHHHHHHHHHTCSEEEEEECCTT
T ss_pred -----------------HHHHHHHHHHHHhcCCceEeeccccc
No 403
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.13 E-value=0.27 Score=44.48 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=43.4
Q ss_pred EEEEeCCCCCC--CCchhhcCCCCccEEecCCccccccccc-cCCCCCCcEEeccCCcCc
Q 048834 764 RVLDLEGVYKP--VLPETVGKLQLLRYFGLRWTFLDSIPES-VGDLPCLETLDLKHTNIT 820 (1108)
Q Consensus 764 r~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~L~~~~l~ 820 (1108)
.+++.++..++ .+|..+. .+|++|+|++|.+..+|.. +..+.+|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777887777 8886532 4799999999999999875 567899999999988544
No 404
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.10 E-value=0.26 Score=55.08 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=52.0
Q ss_pred EeEEccCCCChhhH-HHHhcCCccc----ccCCcc-eeEEEcCCCC-CHHHHHHHHHHHhCCC--------chhHHHHhh
Q 048834 190 IPVVDVAGSAETPE-LWKIYSCDDI----KNHFQC-RAWFLVPPRL-DKRELAINILNQFAPT--------DVELEEKLL 254 (1108)
Q Consensus 190 i~i~G~gGiGKTtl-a~~v~~~~~~----~~~F~~-~~~~~~s~~~-~~~~l~~~i~~~~~~~--------~~~~~~~~~ 254 (1108)
++|+|..|+||||| ...|.|.... .++-+. ++|+-+.+.. .+.++.+++.+.=..+ ..+......
T Consensus 165 ~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 244 (510)
T 2ck3_A 165 ELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQY 244 (510)
T ss_dssp CEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHH
T ss_pred EEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHH
Confidence 89999999999999 4677765332 123554 6788888775 4556666665421000 000000000
Q ss_pred --cchHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 255 --ESPQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 255 --~~l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
-.....+.+++ .+|.+||++||+...
T Consensus 245 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 245 LAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 00111223333 589999999999754
No 405
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.05 E-value=0.094 Score=53.47 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 406
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.01 E-value=0.09 Score=55.59 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.4
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.-.+|+|+|.+|+||||++..+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999998886
No 407
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.01 E-value=0.092 Score=52.76 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=20.1
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-.+|.|.|+.|+||||+|+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 408
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.94 E-value=0.32 Score=54.30 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=51.0
Q ss_pred EeEEccCCCChhhHH-HHhcCCcccccCCcc-eeEEEcCCCC-CHHHHHHHHHHHhCCCch--------hHHHHhh--cc
Q 048834 190 IPVVDVAGSAETPEL-WKIYSCDDIKNHFQC-RAWFLVPPRL-DKRELAINILNQFAPTDV--------ELEEKLL--ES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla-~~v~~~~~~~~~F~~-~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~~~~~~~--~~ 256 (1108)
++|+|..|+|||||| ..|.|.. +-+. ++|+-+.+.. .+.++.+++.+.=..+.. +...... -.
T Consensus 165 ~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (502)
T 2qe7_A 165 ELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 (502)
T ss_dssp CEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 899999999999995 6777652 3453 4678888775 455666666653111100 0000000 00
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .+|.+||++||+...
T Consensus 241 ~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 241 AGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 011223333 589999999998754
No 409
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.93 E-value=0.11 Score=56.86 Aligned_cols=105 Identities=6% Similarity=-0.049 Sum_probs=0.0
Q ss_pred hHhhhcccccccchhhhhhhhhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH
Q 048834 153 SEAANSNKKTGMLDFILNDEVKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR 232 (1108)
Q Consensus 153 ~~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~ 232 (1108)
++++|.++..+.+....+-....=.-.-..+-...+-|-++|++|.|||+||++|. ......|-...--.+...+--.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA--~e~~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA--NQTSATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHH--HHHTCEEEEEESGGGCCSSSSH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHH--HHhCCCEEEEEHHHhhhccCch
Q ss_pred HHHHHHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCCC
Q 048834 233 ELAINILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVRT 279 (1108)
Q Consensus 233 ~l~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw~ 279 (1108)
. ...+.......-.....+|.+|+++.
T Consensus 260 s--------------------ek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 260 G--------------------PRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp H--------------------HHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred H--------------------HHHHHHHHHHHHhcCCcEEEEehhhh
No 410
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.83 E-value=0.1 Score=51.61 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.3
Q ss_pred eEeEEccCCCChhhHHHHhcC
Q 048834 189 HIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+|+|.|+.|+||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999973
No 411
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.82 E-value=0.1 Score=54.45 Aligned_cols=22 Identities=5% Similarity=0.040 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4599999999999999999984
No 412
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.82 E-value=0.098 Score=54.09 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=19.7
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
=.+++|+|..|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3569999999999999999886
No 413
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.82 E-value=0.1 Score=51.96 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.9
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|+|.|+.|+||||+|+.+-+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999873
No 414
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.79 E-value=0.1 Score=53.33 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999985
No 415
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.79 E-value=0.17 Score=54.17 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=21.4
Q ss_pred CCCceEeEEccCCCChhhHHHHhcC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.....|.|+|+.|+||||+|+.+.+
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHH
Confidence 3456699999999999999999883
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.78 E-value=0.1 Score=52.28 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.4
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.+|.|+|+.|+||||+|+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999873
No 417
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.77 E-value=0.096 Score=55.98 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=21.2
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+|||+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999873
No 418
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.76 E-value=0.094 Score=54.91 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=19.5
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
+.|+|..|.||||||+++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999853
No 419
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.75 E-value=0.1 Score=52.51 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=18.4
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|+|.|+.|+||||+|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999986
No 420
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.72 E-value=0.1 Score=54.06 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999984
No 421
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.71 E-value=0.11 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999853
No 422
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.14 Score=56.87 Aligned_cols=89 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHhhhc-----------CCCCCceEeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHHHHHH
Q 048834 168 ILNDEVKGLAELILS-----------DYPSPLHIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKRELAI 236 (1108)
Q Consensus 168 ll~~~~~~~~~~l~~-----------~~~~~~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~~l~~ 236 (1108)
++++.+++|.+.+.. +-...+-|-++|++|.|||+||++|. ......|-..-.-.+...+--..
T Consensus 185 Gl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA--~e~~~~f~~v~~s~l~~~~vGes--- 259 (434)
T 4b4t_M 185 GLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACA--AQTNATFLKLAAPQLVQMYIGEG--- 259 (434)
T ss_dssp SCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH--HHHTCEEEEEEGGGGCSSCSSHH---
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHH--HHhCCCEEEEehhhhhhcccchH---
Q ss_pred HHHHHhCCCchhHHHHhhcchHHHHHHHccCCeEEEEEcCCC
Q 048834 237 NILNQFAPTDVELEEKLLESPQTVVHNYLIHKRYLVILTDVR 278 (1108)
Q Consensus 237 ~i~~~~~~~~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDDVw 278 (1108)
...+.......-.....+|.+|+++
T Consensus 260 -----------------e~~ir~lF~~A~~~aP~IifiDEiD 284 (434)
T 4b4t_M 260 -----------------AKLVRDAFALAKEKAPTIIFIDELD 284 (434)
T ss_dssp -----------------HHHHHHHHHHHHHHCSEEEEEECTH
T ss_pred -----------------HHHHHHHHHHHHhcCCeEEeecchh
No 423
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.68 E-value=0.45 Score=53.10 Aligned_cols=87 Identities=8% Similarity=0.017 Sum_probs=51.0
Q ss_pred EeEEccCCCChhhHH-HHhcCCcccccCCcc-eeEEEcCCCC-CHHHHHHHHHHHhC--------CCchhHHHHhh--cc
Q 048834 190 IPVVDVAGSAETPEL-WKIYSCDDIKNHFQC-RAWFLVPPRL-DKRELAINILNQFA--------PTDVELEEKLL--ES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla-~~v~~~~~~~~~F~~-~~~~~~s~~~-~~~~l~~~i~~~~~--------~~~~~~~~~~~--~~ 256 (1108)
++|+|..|+|||||| ..|.|.. .-+. ++|+-+.+.. .+.++.+++.+.=. ....+...... -.
T Consensus 178 ~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 253 (515)
T 2r9v_A 178 ELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPY 253 (515)
T ss_dssp EEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 899999999999995 6888653 3554 4678888775 45566666654210 00000000000 00
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .+|.+||++||+...
T Consensus 254 ~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 254 AGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 111233333 589999999999754
No 424
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.66 E-value=0.17 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.6
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|+|.+|+||||++..+.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999998886
No 425
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.65 E-value=0.11 Score=53.86 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4699999999999999999985
No 426
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.64 E-value=0.15 Score=52.40 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.8
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|.|.|+.|+||||+|+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999986
No 427
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.62 E-value=0.16 Score=56.95 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.6
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.||+|+|..|+|||||++.+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 46899999999999999999873
No 428
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.60 E-value=0.13 Score=49.96 Aligned_cols=110 Identities=15% Similarity=0.108 Sum_probs=60.5
Q ss_pred cCCCCccEEecCCc-ccc-----ccccccCCCCCCcEEeccCCcCc-----cCChhhccccccCEEEeccccccccc--c
Q 048834 781 GKLQLLRYFGLRWT-FLD-----SIPESVGDLPCLETLDLKHTNIT-----SLPKSIWKVKTLRHLYMNDIYLQMSV--Q 847 (1108)
Q Consensus 781 ~~l~~L~~L~l~~~-~i~-----~lp~~i~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~--~ 847 (1108)
.+-..|+.|+|+++ .+. .+-..+..-+.|+.|+|++|.+. .+...+..-+.|++|+|++|.+.... .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44556777777764 544 34445556667777777777655 33344555677777777777654221 1
Q ss_pred CCccccCcccccccccccccC---CC----CChhhhccCcCCceeeeeec
Q 048834 848 KPFVKYSLTNLQTLWSLLIGN---KS----PPLNWLESLRGLKKLGLTCH 890 (1108)
Q Consensus 848 ~~~~l~~l~~L~~L~~~~~~~---~~----~~~~~l~~l~~L~~L~l~~~ 890 (1108)
+...+..-+.|+.|++..+.. .. .+...+..-+.|..|+++.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 112233445577776654322 10 22334445566666666544
No 429
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.57 E-value=0.11 Score=51.90 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=19.1
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
+|+|.|+.|+||||+|+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999986
No 430
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.55 E-value=0.11 Score=53.75 Aligned_cols=22 Identities=14% Similarity=0.072 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999985
No 431
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.53 E-value=0.12 Score=49.64 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.9
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
..+++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 57899999999999999999883
No 432
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.52 E-value=0.1 Score=54.96 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=17.6
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|.|..|+||||+|+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999886
No 433
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.50 E-value=0.11 Score=52.25 Aligned_cols=20 Identities=10% Similarity=0.249 Sum_probs=18.4
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|+|.|+.|+||||+|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999986
No 434
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.49 E-value=0.13 Score=51.39 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.1
Q ss_pred CCCceEeEEccCCCChhhHHHHhcC
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+||-|.|++|+||||.|+.+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999999873
No 435
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.48 E-value=0.11 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=20.0
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|+|.|+.|+||||+|+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 436
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.47 E-value=0.11 Score=53.88 Aligned_cols=22 Identities=9% Similarity=0.203 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4599999999999999999985
No 437
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.47 E-value=0.11 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.+++|+|..|+||||+++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999998873
No 438
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.42 E-value=0.11 Score=53.39 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=20.2
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999985
No 439
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.40 E-value=0.12 Score=52.21 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..|.|.|+.|+||||+|+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999997
No 440
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.39 E-value=0.16 Score=52.43 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=20.7
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|.|+|++|+||||+|+.+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999987
No 441
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.36 E-value=0.12 Score=53.05 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.35 E-value=0.12 Score=53.08 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999999985
No 443
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.34 E-value=0.11 Score=53.36 Aligned_cols=22 Identities=5% Similarity=-0.089 Sum_probs=20.3
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3599999999999999999985
No 444
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.20 E-value=0.11 Score=53.84 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=19.4
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
+.|+|..|+||||||+.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999853
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.19 E-value=0.12 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46999999999999999999853
No 446
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.19 E-value=0.24 Score=54.96 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=51.2
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCC--cceeEEEcCCCC-CHHHHHHHHHHHhCCCch--------h--HHHHhhcc
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHF--QCRAWFLVPPRL-DKRELAINILNQFAPTDV--------E--LEEKLLES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F--~~~~~~~~s~~~-~~~~l~~~i~~~~~~~~~--------~--~~~~~~~~ 256 (1108)
++|.|..|+|||||++.|.++......= +.++|+-+.+.. .+.++..++...=..+.. + ..-...-.
T Consensus 155 ~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~ 234 (469)
T 2c61_A 155 LPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPR 234 (469)
T ss_dssp CCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHH
Confidence 8899999999999998887543321111 356777777665 455666666543100000 0 00000001
Q ss_pred hHHHHHHHc---cCCeEEEEEcCCCC
Q 048834 257 PQTVVHNYL---IHKRYLVILTDVRT 279 (1108)
Q Consensus 257 l~~~l~~~l---~~kr~LlVLDDVw~ 279 (1108)
....+.+++ .+|.+||++||+..
T Consensus 235 ~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 235 MALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 112234444 47999999999864
No 447
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.18 E-value=0.12 Score=52.89 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=20.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35999999999999999999853
No 448
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.15 E-value=0.12 Score=53.74 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||++.+..-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 449
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.08 E-value=0.12 Score=53.68 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=20.3
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999985
No 450
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.07 E-value=0.13 Score=53.55 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4699999999999999999984
No 451
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.04 E-value=0.15 Score=53.79 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.6
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|-|+|+.|+||||+|+.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999997
No 452
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.03 E-value=0.56 Score=46.31 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCC--CceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEE
Q 048834 371 QLLRLAQLTMSSS--SKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWAN 423 (1108)
Q Consensus 371 ~l~~i~~~l~~~~--~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~ 423 (1108)
.++.+.+.+.... +.+..+.++|.+|+|||++|+.+++. .........++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~ 89 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEE
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE
Confidence 3444444444331 22367889999999999999999876 222223344555
No 453
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.97 E-value=0.13 Score=54.91 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=19.6
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|+|+|+.|+||||||+.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 479999999999999999887
No 454
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.96 E-value=0.21 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.0
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..+|+|+|.+|+||||++..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999998886
No 455
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.95 E-value=0.13 Score=52.90 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.5
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999853
No 456
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.95 E-value=2.1 Score=48.16 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=34.1
Q ss_pred ceeeehHHHHHHHHHHhC---------C-CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS---------S-SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~---------~-~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|.+...+.+...+.. . ...+..+.++|.+|+|||++|+.+++.
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356888777777766521 1 123578889999999999999998875
No 457
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.93 E-value=0.76 Score=45.06 Aligned_cols=33 Identities=9% Similarity=0.080 Sum_probs=23.8
Q ss_pred eEeEEccCCCChhhHHHHhcCCcccccCCcceeEE
Q 048834 189 HIPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWF 223 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~ 223 (1108)
.|.|=|.-|+||||.++.+. .....+--.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~--~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLA--QYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHH--HHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHHHCCCcEEEE
Confidence 47888999999999999998 4455443333333
No 458
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.89 E-value=0.17 Score=47.06 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=33.8
Q ss_pred ceeeehHHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+++|....++++.+.+..-......+-++|..|+|||++|+.++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3467888888887777543223345779999999999999999875
No 459
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.85 E-value=0.14 Score=53.65 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||.+.+..-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 45999999999999999999853
No 460
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.75 E-value=1.8 Score=49.24 Aligned_cols=153 Identities=12% Similarity=0.127 Sum_probs=81.1
Q ss_pred ceeeehHHHHHHHHHHhCC-----------CCceEEEEEEcCCCChHHHHHHHHhcCccccccCceeEEEEeccCCCcCH
Q 048834 364 ELVGLKDQLLRLAQLTMSS-----------SSKYFLISVVGVAGSGKTTLVETIYNSSYIRQNFEYHAWANVDVSHDFDL 432 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~~-----------~~~~~~i~i~G~~g~GKT~la~~~~~~~~~~~~f~~~~w~~v~~s~~~~~ 432 (1108)
+++|.+..++.+.+.+..- ...+..+-++|.+|+|||++|+.+.+.. . ..++.+..
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~-----~~fv~vn~------ 271 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--G-----AFFFLING------ 271 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--S-----SEEEEEEH------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--C-----CCEEEEEc------
Confidence 4678888888877766431 2345678899999999999999987652 1 12333111
Q ss_pred HHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCCh-------------hhHHHHHHHhCCCCCCCCC
Q 048834 433 RKVFINILEQVTRVKIAEELALNELESRLIRLFQSKRYLIVLDDVHLP-------------GAWYELQRIFSPNTSSSGS 499 (1108)
Q Consensus 433 ~~l~~~il~~l~~~~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~~-------------~~~~~l~~~~~~~~~~~~s 499 (1108)
..+...+.+ .....+...+.....+.+.++++|+++.. .....+...+.......+.
T Consensus 272 ----~~l~~~~~g------~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 272 ----PEIMSKLAG------ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ----HHHHTSCTT------HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ----hHhhhhhcc------hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111111110 11222233344444567789999998321 1112222222211111334
Q ss_pred EEEEEcCchH-HHHhcC---CCcceEecCCCChhhhHHHHhhhh
Q 048834 500 RVILLTREAF-VARAFS---PSIILLQLRPLNVDESWELFLKKV 539 (1108)
Q Consensus 500 ~iivttr~~~-v~~~~~---~~~~~~~~~~L~~~~~~~lf~~~~ 539 (1108)
.++.+|.... +..... .....+.+...+.++..+++....
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 5555555442 211221 123467788888888888776554
No 461
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.67 E-value=0.13 Score=51.83 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=19.1
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..|.|.|+.|+||||+|+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999997
No 462
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.63 E-value=0.14 Score=51.69 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=18.6
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|.|.|+.|+||||+|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999987
No 463
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.55 E-value=0.18 Score=49.06 Aligned_cols=37 Identities=8% Similarity=0.026 Sum_probs=26.0
Q ss_pred hhhHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 173 VKGLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 173 ~~~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
...+..++. +-+.-..+.|+|++|.||||+|.++.+.
T Consensus 45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 344555554 2333456999999999999999888743
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.55 E-value=0.16 Score=51.77 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.2
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
....+|+|+|+.|+||||+++.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999887
No 465
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.49 E-value=0.18 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.3
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...++.++|.||+||||++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHH
Confidence 46778899999999999998886
No 466
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=89.42 E-value=0.15 Score=53.72 Aligned_cols=24 Identities=0% Similarity=-0.040 Sum_probs=20.8
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.=.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 345699999999999999999873
No 467
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.37 E-value=0.38 Score=51.05 Aligned_cols=51 Identities=10% Similarity=-0.028 Sum_probs=32.7
Q ss_pred ceEeEEccCCCChhhHHHHhcCCcccccCCc-ceeEEEcCCCCCHHHHHHHHHHHh
Q 048834 188 LHIPVVDVAGSAETPELWKIYSCDDIKNHFQ-CRAWFLVPPRLDKRELAINILNQF 242 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~~~~~~~F~-~~~~~~~s~~~~~~~l~~~i~~~~ 242 (1108)
.+++|+|..|+|||||++.+... +...-. .++|+... ....++.+.+....
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~--~~~~~G~~v~~~~~e--~~~~~~~~r~~~~~ 87 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ--WGTAMGKKVGLAMLE--ESVEETAEDLIGLH 87 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH--HHHTSCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHHcCCeEEEEeCc--CCHHHHHHHHHHHH
Confidence 46999999999999999988743 332222 34455543 24455555555544
No 468
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.36 E-value=0.15 Score=51.10 Aligned_cols=20 Identities=10% Similarity=0.051 Sum_probs=18.4
Q ss_pred eEeEEccCCCChhhHHHHhc
Q 048834 189 HIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~ 208 (1108)
.|.|.|+.|+||||+|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999987
No 469
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.33 E-value=0.17 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=21.1
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+|.|+|.+|+|||||+..+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~ 60 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLID 60 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999988763
No 470
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.30 E-value=0.6 Score=51.94 Aligned_cols=87 Identities=8% Similarity=0.039 Sum_probs=50.8
Q ss_pred EeEEccCCCChhhHH-HHhcCCcccccCCcc-eeEEEcCCCC-CHHHHHHHHHHHh-CCCch-------hHHHHhh--cc
Q 048834 190 IPVVDVAGSAETPEL-WKIYSCDDIKNHFQC-RAWFLVPPRL-DKRELAINILNQF-APTDV-------ELEEKLL--ES 256 (1108)
Q Consensus 190 i~i~G~gGiGKTtla-~~v~~~~~~~~~F~~-~~~~~~s~~~-~~~~l~~~i~~~~-~~~~~-------~~~~~~~--~~ 256 (1108)
++|.|-.|+|||||| ..|.|. .+-+. ++|+-+.+.. .+.++..++.+.= ..... +...... -.
T Consensus 165 ~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~ 240 (513)
T 3oaa_A 165 ELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPY 240 (513)
T ss_dssp CEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHH
Confidence 899999999999996 677764 23444 5688888875 4556666655431 11100 0000000 00
Q ss_pred hHHHHHHHc--cCCeEEEEEcCCCCh
Q 048834 257 PQTVVHNYL--IHKRYLVILTDVRTP 280 (1108)
Q Consensus 257 l~~~l~~~l--~~kr~LlVLDDVw~~ 280 (1108)
....+.+++ .+|.+||++||+...
T Consensus 241 ~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 241 AGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEecChHHH
Confidence 011123333 589999999999754
No 471
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.28 E-value=0.24 Score=55.35 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...++|.|+|.||+||||+|-.+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999987776
No 472
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.27 E-value=0.15 Score=55.16 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred CceEeEEccCCCChhhHHHHhcC
Q 048834 187 PLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
-.+|+|+|..|+||||+++.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 46899999999999999998873
No 473
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.21 E-value=0.15 Score=51.93 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.2
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-.+|+|.|..|+||||+++.+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999999984
No 474
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.21 E-value=0.14 Score=53.76 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=19.4
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
|.|+|..|+||||||+.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999853
No 475
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.21 E-value=0.18 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.6
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...+|+|+|.+|+||||++..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHH
Confidence 45789999999999999998887
No 476
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.20 E-value=0.17 Score=51.05 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=21.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
...+|.|+|.+|+|||||+..+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999988873
No 477
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.20 E-value=0.4 Score=52.32 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=33.1
Q ss_pred eeeehHHHHHHHHHHhC---------C--CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 365 LVGLKDQLLRLAQLTMS---------S--SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 365 ~~g~~~~l~~i~~~l~~---------~--~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
+.|.+...+++.+.+.- . -..|+-+-++|++|+|||.+|+++++.
T Consensus 150 IgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 150 VGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 45777777766655431 1 223677889999999999999999876
No 478
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.11 E-value=0.49 Score=52.48 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=34.3
Q ss_pred ceeeehHHHHHHHHHHhC---C--------CCceEEEEEEcCCCChHHHHHHHHhcC
Q 048834 364 ELVGLKDQLLRLAQLTMS---S--------SSKYFLISVVGVAGSGKTTLVETIYNS 409 (1108)
Q Consensus 364 ~~~g~~~~l~~i~~~l~~---~--------~~~~~~i~i~G~~g~GKT~la~~~~~~ 409 (1108)
++.|.+...+++...+.- . -..|+-+-++|++|+|||.+|+++++.
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345777777776655532 1 233788999999999999999999876
No 479
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=89.08 E-value=0.3 Score=55.50 Aligned_cols=36 Identities=19% Similarity=0.110 Sum_probs=26.3
Q ss_pred hHHHhhhcCCCCCceEeEEccCCCChhhHHHHhcCC
Q 048834 175 GLAELILSDYPSPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 175 ~~~~~l~~~~~~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.++.++..+....+-|-++|++|+||||+|+++.+.
T Consensus 51 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 344455444444456889999999999999999843
No 480
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.03 E-value=1.9 Score=45.54 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEEEcCCCChHHHHHHHHhcCcc-cc-ccCceeEEEEeccCC-CcCHHHHHHHHHHHHhhh
Q 048834 370 DQLLRLAQLTMSSSSKYFLISVVGVAGSGKTTLVETIYNSSY-IR-QNFEYHAWANVDVSH-DFDLRKVFINILEQVTRV 446 (1108)
Q Consensus 370 ~~l~~i~~~l~~~~~~~~~i~i~G~~g~GKT~la~~~~~~~~-~~-~~f~~~~w~~v~~s~-~~~~~~l~~~il~~l~~~ 446 (1108)
..++.+.+.+.... +.++.++|..|+|||++|..+...-. .. .+.+. ..+. .+. ....+++ +++.......
T Consensus 4 ~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~--~~~~~~~id~i-r~li~~~~~~ 77 (305)
T 2gno_A 4 DQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEID--PEGENIGIDDI-RTIKDFLNYS 77 (305)
T ss_dssp CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEEC--CSSSCBCHHHH-HHHHHHHTSC
T ss_pred HHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEc--CCcCCCCHHHH-HHHHHHHhhc
Confidence 34455666665544 56888999999999999988865310 11 12222 2222 322 2222222 2233222210
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCceEEEEeCCCC--hhhHHHHHHHhCCCCCCCCCEEEEEcCc-hHHHHhcCCCcceEec
Q 048834 447 KIAEELALNELESRLIRLFQSKRYLIVLDDVHL--PGAWYELQRIFSPNTSSSGSRVILLTRE-AFVARAFSPSIILLQL 523 (1108)
Q Consensus 447 ~~~~~~~~~~l~~~l~~~l~~k~~llvlDdv~~--~~~~~~l~~~~~~~~~~~~s~iivttr~-~~v~~~~~~~~~~~~~ 523 (1108)
+ +.++.-++++|+++. ....+.+...+. .....+.+++++.. ..+....... ++++
T Consensus 78 p-----------------~~~~~kvviIdead~lt~~a~naLLk~LE--ep~~~t~fIl~t~~~~kl~~tI~SR--~~~f 136 (305)
T 2gno_A 78 P-----------------ELYTRKYVIVHDCERMTQQAANAFLKALE--EPPEYAVIVLNTRRWHYLLPTIKSR--VFRV 136 (305)
T ss_dssp C-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH--SCCTTEEEEEEESCGGGSCHHHHTT--SEEE
T ss_pred c-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHh--CCCCCeEEEEEECChHhChHHHHce--eEeC
Confidence 0 124567889999875 445555555543 11245666665543 3444444444 8899
Q ss_pred CCCChhhhHHHHhhhh
Q 048834 524 RPLNVDESWELFLKKV 539 (1108)
Q Consensus 524 ~~L~~~~~~~lf~~~~ 539 (1108)
.+++.++....+....
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999888876654
No 481
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.88 E-value=0.18 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.0
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3699999999999999999984
No 482
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.75 E-value=0.18 Score=51.36 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=19.3
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
..|.|.|+.|+||||+|+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999997
No 483
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.74 E-value=0.19 Score=47.90 Aligned_cols=22 Identities=5% Similarity=0.065 Sum_probs=19.7
Q ss_pred eEeEEccCCCChhhHHHHhcCC
Q 048834 189 HIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 189 vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.|+|+|.+|+|||||.+.+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998754
No 484
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.71 E-value=0.18 Score=49.42 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
-.|+|+|..|+|||||.+.+.+.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45999999999999999988754
No 485
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.65 E-value=0.25 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.5
Q ss_pred CCceEeEEccCCCChhhHHHHhc
Q 048834 186 SPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...||.++|.+|+||||++..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999988776
No 486
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.50 E-value=0.19 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.6
Q ss_pred ceEeEEccCCCChhhHHHHhcCC
Q 048834 188 LHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
.+++|+|..|.|||||.+.+..-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46999999999999999999853
No 487
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.49 E-value=0.19 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.2
Q ss_pred EeEEccCCCChhhHHHHhcCC
Q 048834 190 IPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~ 210 (1108)
|+|+|.+|+|||||.+.+.+.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999998863
No 488
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.44 E-value=0.48 Score=53.26 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=33.7
Q ss_pred EeEEccCCCChhhHHHHhcCCcccccCCcceeEEEcCCCCCHH-HHHHHH
Q 048834 190 IPVVDVAGSAETPELWKIYSCDDIKNHFQCRAWFLVPPRLDKR-ELAINI 238 (1108)
Q Consensus 190 i~i~G~gGiGKTtla~~v~~~~~~~~~F~~~~~~~~s~~~~~~-~l~~~i 238 (1108)
++|.|..|+|||||++.+-+. .+-+.++|+-+.+..+.. ++..++
T Consensus 230 ~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 230 AAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp EEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred EEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 899999999999999988642 234678888888876544 444443
No 489
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.41 E-value=0.32 Score=53.06 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=22.7
Q ss_pred CCCCCceEeEEccCCCChhhHHHHhcC
Q 048834 183 DYPSPLHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 183 ~~~~~~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
+-+.-.+|+|+|+.|.|||||++.+..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 334456899999999999999999984
No 490
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.37 E-value=0.21 Score=53.48 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=20.6
Q ss_pred CCCceEeEEccCCCChhhHHHHhc
Q 048834 185 PSPLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 185 ~~~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
...++|+|+|-||+||||+|-.+-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHH
Confidence 356889999999999999998776
No 491
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.36 E-value=0.23 Score=53.16 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.4
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.-|-|+|.+|+||||+|+.+.+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3477999999999999999984
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.36 E-value=0.2 Score=53.13 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=19.5
Q ss_pred ceEeEEccCCCChhhHHHHhc
Q 048834 188 LHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~ 208 (1108)
.+|.|+|+.|+||||||+.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 493
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.31 E-value=0.19 Score=53.05 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=20.0
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
-.+|+|+|.+|+||||++..+.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999887
No 494
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.30 E-value=0.14 Score=54.04 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=20.1
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+++|+|..|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4599999999999999999974
No 495
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.16 E-value=2.8 Score=39.82 Aligned_cols=19 Identities=32% Similarity=0.704 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHH
Q 048834 388 LISVVGVAGSGKTTLVETI 406 (1108)
Q Consensus 388 ~i~i~G~~g~GKT~la~~~ 406 (1108)
+|.+.|++|+||||+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999987
No 496
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.15 E-value=0.2 Score=52.67 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=19.7
Q ss_pred CceEeEEccCCCChhhHHHHhc
Q 048834 187 PLHIPVVDVAGSAETPELWKIY 208 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v~ 208 (1108)
=.++.|+|.+|+||||||..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3569999999999999998887
No 497
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.06 E-value=0.35 Score=54.05 Aligned_cols=85 Identities=7% Similarity=0.031 Sum_probs=49.4
Q ss_pred EeEEccCCCChhhHH-HHhcCCcccccCCcc-eeEEEcCCCCC-HHHHHHHHHHHh-CCCch----hHHHHhhc------
Q 048834 190 IPVVDVAGSAETPEL-WKIYSCDDIKNHFQC-RAWFLVPPRLD-KRELAINILNQF-APTDV----ELEEKLLE------ 255 (1108)
Q Consensus 190 i~i~G~gGiGKTtla-~~v~~~~~~~~~F~~-~~~~~~s~~~~-~~~l~~~i~~~~-~~~~~----~~~~~~~~------ 255 (1108)
++|.|..|+|||||| ..|.|.. .-+. ++|+-+.+... +.++.+++.+.= ..... ..++....
T Consensus 166 ~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~ 241 (507)
T 1fx0_A 166 ELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPY 241 (507)
T ss_dssp CBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHH
T ss_pred EEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHH
Confidence 899999999999995 6888753 2454 46788887753 445555554320 00000 00000000
Q ss_pred ---chHHHHHHHccCCeEEEEEcCCCCh
Q 048834 256 ---SPQTVVHNYLIHKRYLVILTDVRTP 280 (1108)
Q Consensus 256 ---~l~~~l~~~l~~kr~LlVLDDVw~~ 280 (1108)
.....++. .+|.+||++||+...
T Consensus 242 ~a~tiAEyfrd--~G~dVLli~Dsltr~ 267 (507)
T 1fx0_A 242 TGAALAEYFMY--RERHTLIIYDDLSKQ 267 (507)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHH--cCCcEEEEEecHHHH
Confidence 11222333 589999999998754
No 498
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.04 E-value=0.21 Score=53.32 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.7
Q ss_pred ceEeEEccCCCChhhHHHHhcC
Q 048834 188 LHIPVVDVAGSAETPELWKIYS 209 (1108)
Q Consensus 188 ~vi~i~G~gGiGKTtla~~v~~ 209 (1108)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999873
No 499
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.03 E-value=0.52 Score=57.88 Aligned_cols=21 Identities=0% Similarity=-0.023 Sum_probs=19.3
Q ss_pred CceEeEEccCCCChhhHHHHh
Q 048834 187 PLHIPVVDVAGSAETPELWKI 207 (1108)
Q Consensus 187 ~~vi~i~G~gGiGKTtla~~v 207 (1108)
-.+++|+|+.|.||||+.+.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 467999999999999999988
No 500
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.01 E-value=0.33 Score=47.03 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCceEeEEccCCCChhhHHHHhcCC
Q 048834 186 SPLHIPVVDVAGSAETPELWKIYSC 210 (1108)
Q Consensus 186 ~~~vi~i~G~gGiGKTtla~~v~~~ 210 (1108)
...-|.|+|.+|+|||||.+.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3455899999999999999998864
Done!