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cmd.read_pdbstr(""""\
EXPDTA THEORETICAL MODEL, MODELLER 9v7 2013/07/10 14:11:52 \
REMARK 6 MODELLER OBJECTIVE FUNCTION: 39.8035 \
REMARK 6 MODELLER BEST TEMPLATE % SEQ ID: 37.500 \
ATOM 1 N LYS 1 -5.587 19.746 -11.508 1.00147.62 N \
ATOM 2 CA LYS 1 -5.458 19.653 -10.038 1.00147.62 C \
ATOM 3 CB LYS 1 -6.669 20.297 -9.333 1.00147.62 C \
ATOM 4 CG LYS 1 -8.044 19.772 -9.765 1.00147.62 C \
ATOM 5 CD LYS 1 -8.439 20.147 -11.195 1.00147.62 C \
ATOM 6 CE LYS 1 -9.879 19.779 -11.560 1.00147.62 C \
ATOM 7 NZ LYS 1 -10.017 18.311 -11.681 1.00147.62 N \
ATOM 8 C LYS 1 -5.304 18.245 -9.577 1.00147.62 C \
ATOM 9 O LYS 1 -5.654 17.300 -10.281 1.00147.62 O \
ATOM 10 N GLU 2 -4.743 18.075 -8.366 1.00163.57 N \
ATOM 11 CA GLU 2 -4.533 16.761 -7.843 1.00163.57 C \
ATOM 12 CB GLU 2 -3.537 16.697 -6.674 1.00163.57 C \
ATOM 13 CG GLU 2 -3.334 15.278 -6.136 1.00163.57 C \
ATOM 14 CD GLU 2 -2.564 14.488 -7.181 1.00163.57 C \
ATOM 15 OE1 GLU 2 -2.205 15.096 -8.223 1.00163.57 O \
ATOM 16 OE2 GLU 2 -2.323 13.271 -6.958 1.00163.57 O \
ATOM 17 C GLU 2 -5.838 16.235 -7.357 1.00163.57 C \
ATOM 18 O GLU 2 -6.771 16.989 -7.088 1.00163.57 O \
ATOM 19 N LEU 3 -5.935 14.898 -7.266 1.00140.24 N \
ATOM 20 CA LEU 3 -7.142 14.290 -6.801 1.00140.24 C \
ATOM 21 CB LEU 3 -7.234 12.783 -7.064 1.00140.24 C \
ATOM 22 CG LEU 3 -7.312 12.425 -8.552 1.00140.24 C \
ATOM 23 CD1 LEU 3 -6.017 12.822 -9.277 1.00140.24 C \
ATOM 24 CD2 LEU 3 -7.691 10.951 -8.740 1.00140.24 C \
ATOM 25 C LEU 3 -7.196 14.472 -5.328 1.00140.24 C \
ATOM 26 O LEU 3 -6.206 14.758 -4.657 1.00140.24 O \
ATOM 27 N PRO 4 -8.394 14.366 -4.846 1.00 97.18 N \
ATOM 28 CA PRO 4 -8.616 14.474 -3.438 1.00 97.18 C \
ATOM 29 CD PRO 4 -9.548 14.799 -5.614 1.00 97.18 C \
ATOM 30 CB PRO 4 -10.081 14.870 -3.265 1.00 97.18 C \
ATOM 31 CG PRO 4 -10.724 14.632 -4.641 1.00 97.18 C \
ATOM 32 C PRO 4 -8.294 13.195 -2.747 1.00 97.18 C \
ATOM 33 O PRO 4 -8.214 12.152 -3.392 1.00 97.18 O \
ATOM 34 N ALA 5 -8.101 13.280 -1.422 1.00 73.88 N \
ATOM 35 CA ALA 5 -7.919 12.134 -0.592 1.00 73.88 C \
ATOM 36 CB ALA 5 -7.718 12.490 0.891 1.00 73.88 C \
ATOM 37 C ALA 5 -9.211 11.407 -0.716 1.00 73.88 C \
ATOM 38 O ALA 5 -9.285 10.186 -0.600 1.00 73.88 O \
ATOM 39 N GLY 6 -10.270 12.187 -0.993 1.00201.73 N \
ATOM 40 CA GLY 6 -11.614 11.710 -1.026 1.00201.73 C \
ATOM 41 C GLY 6 -12.300 12.581 -0.039 1.00201.73 C \
ATOM 42 O GLY 6 -13.527 12.666 0.007 1.00201.73 O \
ATOM 43 N ALA 7 -11.490 13.266 0.783 1.00 58.65 N \
ATOM 44 CA ALA 7 -12.037 14.191 1.724 1.00 58.65 C \
ATOM 45 CB ALA 7 -10.965 14.854 2.605 1.00 58.65 C \
ATOM 46 C ALA 7 -12.693 15.269 0.931 1.00 58.65 C \
ATOM 47 O ALA 7 -13.804 15.703 1.230 1.00 58.65 O \
ATOM 48 N ILE 8 -12.012 15.717 -0.139 1.00 79.15 N \
ATOM 49 CA ILE 8 -12.574 16.761 -0.934 1.00 79.15 C \
ATOM 50 CB ILE 8 -11.722 17.130 -2.112 1.00 79.15 C \
ATOM 51 CG2 ILE 8 -12.419 18.276 -2.865 1.00 79.15 C \
ATOM 52 CG1 ILE 8 -10.289 17.462 -1.663 1.00 79.15 C \
ATOM 53 CD1 ILE 8 -10.199 18.616 -0.669 1.00 79.15 C \
ATOM 54 C ILE 8 -13.865 16.171 -1.487 1.00 79.15 C \
ATOM 55 O ILE 8 -14.957 16.704 -1.160 1.00 79.15 O \
ATOM 56 OXT ILE 8 -13.769 15.167 -2.242 1.00 79.15 O \
TER 57 ILE 8 \
END \
\
""","model_5")
cmd.show_as("cartoon" ,"model_5")
cmd.spectrum(expression="count",selection="model_5_aln",byres=2)