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cmd.read_pdbstr(""""\ EXPDTA THEORETICAL MODEL, MODELLER 9v7 2013/07/09 07:33:10 \ REMARK 6 MODELLER OBJECTIVE FUNCTION: 14.0135 \ REMARK 6 MODELLER BEST TEMPLATE % SEQ ID: 20.000 \ ATOM 1 N VAL 1 -4.692 43.483 3.973 1.00 75.51 N \ ATOM 2 CA VAL 1 -6.014 43.597 4.632 1.00 75.51 C \ ATOM 3 CB VAL 1 -6.343 45.057 4.811 1.00 75.51 C \ ATOM 4 CG1 VAL 1 -6.396 45.702 3.413 1.00 75.51 C \ ATOM 5 CG2 VAL 1 -7.601 45.220 5.682 1.00 75.51 C \ ATOM 6 C VAL 1 -7.056 42.879 3.820 1.00 75.51 C \ ATOM 7 O VAL 1 -6.874 41.716 3.466 1.00 75.51 O \ ATOM 8 N PHE 2 -8.187 43.535 3.501 1.00 89.73 N \ ATOM 9 CA PHE 2 -9.177 42.868 2.720 1.00 89.73 C \ ATOM 10 CB PHE 2 -10.431 43.711 2.451 1.00 89.73 C \ ATOM 11 CG PHE 2 -11.186 43.837 3.730 1.00 89.73 C \ ATOM 12 CD1 PHE 2 -12.055 42.840 4.115 1.00 89.73 C \ ATOM 13 CD2 PHE 2 -11.025 44.929 4.550 1.00 89.73 C \ ATOM 14 CE1 PHE 2 -12.761 42.942 5.289 1.00 89.73 C \ ATOM 15 CE2 PHE 2 -11.730 45.043 5.730 1.00 89.73 C \ ATOM 16 CZ PHE 2 -12.599 44.044 6.097 1.00 89.73 C \ ATOM 17 C PHE 2 -8.550 42.552 1.410 1.00 89.73 C \ ATOM 18 O PHE 2 -8.721 41.450 0.884 1.00 89.73 O \ ATOM 19 N SER 3 -7.806 43.516 0.841 1.00 86.52 N \ ATOM 20 CA SER 3 -7.159 43.189 -0.384 1.00 86.52 C \ ATOM 21 CB SER 3 -6.356 44.362 -0.979 1.00 86.52 C \ ATOM 22 OG SER 3 -7.222 45.442 -1.303 1.00 86.52 O \ ATOM 23 C SER 3 -6.203 42.116 0.009 1.00 86.52 C \ ATOM 24 O SER 3 -5.219 42.371 0.697 1.00 86.52 O \ ATOM 25 N ALA 4 -6.490 40.871 -0.416 1.00 30.65 N \ ATOM 26 CA ALA 4 -5.706 39.748 0.002 1.00 30.65 C \ ATOM 27 CB ALA 4 -6.223 38.427 -0.581 1.00 30.65 C \ ATOM 28 C ALA 4 -4.310 39.920 -0.483 1.00 30.65 C \ ATOM 29 O ALA 4 -3.356 39.695 0.258 1.00 30.65 O \ ATOM 30 N ARG 5 -4.165 40.338 -1.751 1.00 45.26 N \ ATOM 31 CA ARG 5 -2.875 40.504 -2.349 1.00 45.26 C \ ATOM 32 CB ARG 5 -2.912 40.310 -3.874 1.00 45.26 C \ ATOM 33 CG ARG 5 -3.226 38.871 -4.281 1.00 45.26 C \ ATOM 34 CD ARG 5 -3.557 38.707 -5.765 1.00 45.26 C \ ATOM 35 NE ARG 5 -3.649 37.242 -6.029 1.00 45.26 N \ ATOM 36 CZ ARG 5 -4.010 36.790 -7.263 1.00 45.26 C \ ATOM 37 NH1 ARG 5 -4.417 37.665 -8.226 1.00 45.26 N \ ATOM 38 NH2 ARG 5 -3.957 35.455 -7.543 1.00 45.26 N \ ATOM 39 C ARG 5 -2.428 41.931 -2.070 1.00 45.26 C \ ATOM 40 O ARG 5 -3.111 42.605 -1.253 1.00 45.26 O \ ATOM 41 OXT ARG 5 -1.402 42.364 -2.658 1.00 45.26 O \ TER 42 ARG 5 \ END \ \ ""","model_2") cmd.show_as("cartoon" ,"model_2") cmd.spectrum(expression="count",selection="model_2_aln",byres=2)