RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10
(100 letters)
>3pvu_A Beta-adrenergic receptor kinase 1; transferase,
serine/threonine-protein kinase, ATP-binding, I
membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A*
3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A*
1bak_A
Length = 695
Score = 93.4 bits (232), Expect = 5e-24
Identities = 58/76 (76%), Positives = 66/76 (86%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLTEADQ 75
+ EVKE PFF LDW V++QKY PPLIPPRGEVNAADAFDIGSFDEEDTKGIKL ++DQ
Sbjct: 444 AQEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQ 503
Query: 76 DLYKNFPLTISERLAE 91
+LY+NFPLTISER +
Sbjct: 504 ELYRNFPLTISERWQQ 519
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 80.2 bits (198), Expect = 2e-19
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLTEADQ 75
D ++ HP F + W Q+ TPP +P V A + D+G+F KG+ +AD
Sbjct: 443 CDGLRTHPLFRDISWRQLEAGMLTPPFVPDSRTVYAKNIQDVGAFST--VKGVAFEKADT 500
Query: 76 DLYKNFP-LTISERLAEF 92
+ ++ F T E
Sbjct: 501 EFFQEFASGTCPIPWQEE 518
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 74.8 bits (184), Expect = 2e-17
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLTEADQ 75
+ EVKEHP F L++ ++ PP P + D DI F KG++L DQ
Sbjct: 439 AREVKEHPLFKKLNFKRLGAGMLEPPFKPDPQAIYCKDVLDIEQFST--VKGVELEPTDQ 496
Query: 76 DLYKNFP 82
D Y+ F
Sbjct: 497 DFYQKFA 503
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU;
CAMP-dependent protein kinase,catalytic mechanism, ATP
hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A
{Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E*
1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A*
1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A*
3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Length = 350
Score = 56.5 bits (137), Expect = 5e-11
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDE--EDTKGIKLTEA 73
+++K H +F DW +Y +K P IP D +FD+ E+ + + E
Sbjct: 288 VNDIKNHKWFATTDWIAIYQRKVEAPFIPK-----FKGPGDTSNFDDYEEEEIRVSINEK 342
Query: 74 DQDLYKNF 81
+ F
Sbjct: 343 CGKEFTEF 350
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics,
structural genomics consortium, SGC, TR; HET: STU; 2.29A
{Homo sapiens}
Length = 384
Score = 56.2 bits (136), Expect = 6e-11
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDT----KGIKLTE 72
+V+ P+ ++W V+ ++ P IP +G +N F++ E K +L +
Sbjct: 267 SDVQNFPYMNDINWDAVFQKRLIPGFIPNKGRLNCDPTFELEEMILESKPLHKKKKRLAK 326
Query: 73 ADQDLYKNFPLTISERLAEFR 93
++D+ K
Sbjct: 327 KEKDMRKCDSSQTCLLQEHLD 347
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open
conformation, transferase; HET: TPO; 2.80A
{Saccharomyces cerevisiae} SCOP: d.144.1.7
Length = 318
Score = 55.6 bits (135), Expect = 9e-11
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFD----EEDTKGIKLT 71
+++VK HP+F + W ++ + P PP + D FD E+ G++
Sbjct: 253 TEDVKNHPWFKEVVWEKLLSRNIETPYEPP---IQQGQG-DTSQFDKYPEEDINYGVQGE 308
Query: 72 EADQDLYKNF 81
+ DL+++F
Sbjct: 309 DPYADLFRDF 318
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase,
transferase, serine/threonine-protein kinase; HET: TPO
ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A*
2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A*
3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A
1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Length = 337
Score = 53.8 bits (130), Expect = 3e-10
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK-GIKLTEAD 74
+ EV EH FF ++W V +K PP P D FD+E T I +T D
Sbjct: 255 AKEVMEHRFFLSINWQDVVQKKLLPPFKP-----QVTSEVDTRYFDDEFTAQSITITPPD 309
Query: 75 QDLYKNFPLTISERL-AEFRRF 95
+ F F
Sbjct: 310 RYDSLGLLELDQREEQEMFEDF 331
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo
sapiens} PDB: 3a8w_A* 1zrz_A*
Length = 345
Score = 53.4 bits (129), Expect = 6e-10
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 14/75 (18%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK--------- 66
+++ HPFF +DW + ++ PP P N + F + +FD + T
Sbjct: 270 FADIQGHPFFRNVDWDMMEQKQVVPPFKP-----NISGEFGLDNFDSQFTNEPVQLTPDD 324
Query: 67 GIKLTEADQDLYKNF 81
+ + DQ ++ F
Sbjct: 325 DDIVRKIDQSEFEGF 339
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity,
atypical PKC, trans transferase substrate complex; HET:
TPO ADE; 2.40A {Mus musculus}
Length = 396
Score = 53.1 bits (128), Expect = 6e-10
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK--------- 66
+++ HPFF +DW + ++ PP P N + F + +FD + T
Sbjct: 313 FADIQGHPFFRNVDWDMMEQKQVVPPFKP-----NISGEFGLDNFDSQFTNEPVQLTPDD 367
Query: 67 GIKLTEADQDLYKNF----PLTISER 88
+ + DQ ++ F PL +S
Sbjct: 368 DDIVRKIDQSEFEGFEYINPLLMSAE 393
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase,
transferase-transferase inhibito; HET: TPO 07U; 2.05A
{Homo sapiens}
Length = 353
Score = 53.0 bits (128), Expect = 8e-10
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK---------G 67
+ HPFF +DW Q+ ++ PP P D+ +FD + K
Sbjct: 276 HAILRHPFFKEIDWAQLNHRQIEPPFRP-----RIKSREDVSNFDPDFIKEEPVLTPIDE 330
Query: 68 IKLTEADQDLYKNF 81
L +QD ++NF
Sbjct: 331 GHLPMINQDEFRNF 344
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase;
HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7
PDB: 2jed_A*
Length = 345
Score = 52.6 bits (127), Expect = 1e-09
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK---------G 67
++++HP F ++W ++ ++ PP P FD +FD+E
Sbjct: 265 GDIRQHPLFREINWEELERKEIDPPFRP-----KVKSPFDCSNFDKEFLNEKPRLSFADR 319
Query: 68 IKLTEADQDLYKNF 81
+ DQ++++NF
Sbjct: 320 ALINSMDQNMFRNF 333
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase,
apoptosis, ATP-binding, cytoplasm, endoplasmic
reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A
{Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Length = 373
Score = 51.5 bits (124), Expect = 3e-09
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK-GIKLTEAD 74
E+K H FF+ ++W + +K TPP P N + D+ FD E T+ +
Sbjct: 288 FMEIKSHVFFSLINWDDLINKKITPPFNP-----NVSGPNDLRHFDPEFTEEPVPNAIGK 342
Query: 75 QDLYKNFPLTISERLAEFRRF 95
++ E F F
Sbjct: 343 APDSVLVTASVKEAAEAFLGF 363
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 51.2 bits (123), Expect = 4e-09
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK 66
+E+K H FF W ++ P++P + + D +FD+ +
Sbjct: 324 VEEIKRHLFFKNDQWAWETLRDTVAPVVP-----DLSSDIDTSNFDDLEED 369
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 50.8 bits (121), Expect = 6e-09
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK---------G 67
++KEH FF +DW ++ ++ PP P A + +FD T+
Sbjct: 593 RDIKEHAFFRYIDWEKLERKEIQPPYKP------KASGRNAENFDRFFTRHPPVLTPPDQ 646
Query: 68 IKLTEADQDLYKNF 81
+ DQ ++ F
Sbjct: 647 EVIRNIDQSEFEGF 660
>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of
P90 ribosomal S6 kinase 2, ATP- binding,
nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus
musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A*
Length = 325
Score = 50.2 bits (121), Expect = 7e-09
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK 66
+E+K H FF+ +DW ++Y ++ PP P D FD E T
Sbjct: 276 VEEIKRHSFFSTIDWNKLYRREIHPPFKP-----ATGRPEDTFYFDPEFTA 321
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition,
allosteric inhibitor, kinase inhibitor hydrophobic
collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB:
3o96_A*
Length = 446
Score = 49.7 bits (119), Expect = 1e-08
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK 66
+ E+ +H FF G+ W VY +K +PP P D FDEE T
Sbjct: 399 AKEIMQHRFFAGIVWQHVYEKKLSPPFKP-----QVTSETDTRYFDEEFTA 444
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive,
active, ribosomal S6 kinase, activation, alternative
initiation, ATP-binding; HET: TPO STU; 2.35A {Homo
sapiens} PDB: 3a61_A* 3a60_A*
Length = 327
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK 66
+ EV+ HPFF ++W ++ +K PP P D+ FD + T+
Sbjct: 271 AGEVQAHPFFRHINWEELLARKVEPPFKP-----LLQSEEDVSQFDSKFTR 316
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase,
transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB:
3iw4_A*
Length = 353
Score = 49.1 bits (118), Expect = 2e-08
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 15/74 (20%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK---------G 67
++KEH FF +DW ++ ++ PP P A + +FD T+
Sbjct: 272 RDIKEHAFFRYIDWEKLERKEIQPPYKP------KACGRNAENFDRFFTRHPPVLTPPDQ 325
Query: 68 IKLTEADQDLYKNF 81
+ DQ ++ F
Sbjct: 326 EVIRNIDQSEFEGF 339
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase,
ATP-BI nucleotide-binding, cardiac contractility, muscle
different; HET: BI8; 2.80A {Homo sapiens}
Length = 412
Score = 46.6 bits (111), Expect = 1e-07
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK-GIKLTEAD 74
+ + + HPFF GLDW + + PP P + A D +FD + ++
Sbjct: 322 AGDFRTHPFFFGLDWDGL--RDSVPPFTP---DFEGAT--DTCNFDLVEDGLTAMVSGGG 374
Query: 75 QDLYKNFPLTISERLAEFRRF 95
+ L F +
Sbjct: 375 ETLSDIREGAPLGVHLPFVGY 395
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA;
HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Length = 437
Score = 45.9 bits (109), Expect = 3e-07
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 21/99 (21%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK--------- 66
++ K+HPFF+G+DW + + P IP + D +FD +D
Sbjct: 333 IEDFKKHPFFSGIDWDNI--RNCEAPYIP-----EVSSPTDTSNFDVDDDCLKNSETMPP 385
Query: 67 -GIKLTEADQDLYKNF----PLTISERLAEFRRFAPESR 100
+ F +S+R P S
Sbjct: 386 PTHTAFSGHHLPFVGFTYTSSCVLSDRSCLRVTAGPTSA 424
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase,
phosphorylation, serine/threonine protein kinase; 1.8A
{Homo sapiens} SCOP: d.144.1.7
Length = 355
Score = 44.6 bits (106), Expect = 6e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIPP 45
+DE+KEH FF ++W + +K P P
Sbjct: 316 ADEIKEHLFFQKINWDDLAAKKVPAPFKPV 345
>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB,
inhibitor, LY333531, diabetes, cancer, transferase,
serine/threonine-protein kinase; HET: SEP LY4; 1.7A
{Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A*
1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A*
3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A*
3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ...
Length = 310
Score = 38.7 bits (91), Expect = 8e-05
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 16 SDEVKEHPFFTGLDWTQVYMQKYTPPLIP 44
+K HPFF + W ++ Q PP +
Sbjct: 283 YGPLKAHPFFESVTWENLHQQT--PPKLT 309
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding,
serine/threonine-protein kinase, ATP-binding,
transferase, coiled coil, cell division, kinase; HET:
TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A*
3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A*
3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A*
2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Length = 284
Score = 28.7 bits (65), Expect = 0.26
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 14 LRSDEVKEHPFFTGLDWTQVYMQKYTPPLIPP 45
L V EHP+ + ++ PP+
Sbjct: 255 LPLKGVMEHPWV------KANSRRVLPPVYQS 280
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG,
transferase; HET: CMP; 2.49A {Homo sapiens} PDB:
3od0_A* 3ogj_A*
Length = 139
Score = 27.7 bits (62), Expect = 0.40
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 2 PKHKAKTPIQQQLRSDEVKEHPFFTGLDWTQV 33
K+P + L + + ++ F L+ +Q+
Sbjct: 8 LPFYPKSPQSKDLIKEAILDNDFMKNLELSQI 39
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit;
beta-barrel, CAMP-binding, catalytic subunit,
transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B*
3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Length = 154
Score = 26.9 bits (60), Expect = 0.80
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 2 PKHKAKTPIQQQLRSDEVKEHPFFTGLDWTQV 33
K K + ++++ F+ LD +
Sbjct: 23 RKVIPKDYKTMAALAKAIEKNVLFSHLDDNER 54
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1,
selectivity residues, POLO-like K structure based drug
design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo
sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A*
3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A*
3db6_A* 3dbe_A* 3dbf_A*
Length = 294
Score = 26.0 bits (58), Expect = 2.1
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 20/57 (35%)
Query: 1 MPKH---KAKTPIQQQLRSD--------EVKEHPFFTGLDWTQVYMQKYTPPLIPPR 46
+PKH A + IQ+ L++D E+ FFT Y P +P
Sbjct: 234 IPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFT---------SGYIPARLPIT 281
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit,
CAMP-dependent protein kinase catalytic subunit alpha;
PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus
norvegicus} PDB: 3idc_B*
Length = 161
Score = 25.8 bits (57), Expect = 2.2
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 2 PKHKAKTPIQQQLRSDEVKEHPFFTGLDWTQV 33
KT Q+ + K+ F LD Q+
Sbjct: 23 RIIHPKTDDQRNRLQEACKDILLFKNLDPEQM 54
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit,
CAMP-dependent protein kinase, alpha-catalytic SU;
cyclic adenosine monophosphate; HET: SEP TPO ANP TAM;
2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Length = 291
Score = 25.0 bits (54), Expect = 5.5
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 2 PKHKAKTPIQQQLRSDEVKEHPFFTGLD 29
K K + ++++ F+ LD
Sbjct: 24 RKVIPKDYKTMAALAKAIEKNVLFSHLD 51
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like
kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB:
2ou7_A* 3fc2_A* 3thb_A*
Length = 335
Score = 25.0 bits (55), Expect = 5.6
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 20/56 (35%)
Query: 1 MPKH---KAKTPIQQQLRSD--------EVKEHPFFTGLDWTQVYMQKYTPPLIPP 45
+PKH A + IQ+ L++D E+ FFT Y P +P
Sbjct: 260 IPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFT---------SGYIPARLPI 306
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase,
transferase; HET: ANP; 2.60A {Plasmodium falciparum}
PDB: 2pmn_X* 2pmo_X*
Length = 348
Score = 24.7 bits (54), Expect = 7.0
Identities = 1/17 (5%), Positives = 7/17 (41%)
Query: 17 DEVKEHPFFTGLDWTQV 33
++ +H + + +
Sbjct: 318 EDALKHEWLADTNIEDL 334
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,577,751
Number of extensions: 82073
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 39
Length of query: 100
Length of database: 6,701,793
Length adjustment: 66
Effective length of query: 34
Effective length of database: 4,859,007
Effective search space: 165206238
Effective search space used: 165206238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)