RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10
(100 letters)
>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
{Cow (Bos taurus) [TaxId: 9913]}
Length = 364
Score = 97.5 bits (242), Expect = 2e-26
Identities = 58/75 (77%), Positives = 65/75 (86%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLTEADQD 76
EVKE PFF LDW V++QKY PPLIPPRGEVNAADAFDIGSFDEEDTKGIKL ++DQ+
Sbjct: 260 QEVKESPFFRSLDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLLDSDQE 319
Query: 77 LYKNFPLTISERLAE 91
LY+NFPLTISER +
Sbjct: 320 LYRNFPLTISERWQQ 334
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 55.1 bits (132), Expect = 5e-11
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDT-KGIKLTEADQ 75
++VK HP+F + W ++ + P PP + D + EED G++ +
Sbjct: 252 EDVKNHPWFKEVVWEKLLSRNIETPYEPPIQQ-GQGDTSQFDKYPEEDINYGVQGEDPYA 310
Query: 76 DLYKNF 81
DL+++F
Sbjct: 311 DLFRDF 316
>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 320
Score = 52.8 bits (126), Expect = 4e-10
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 14/74 (18%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTK---------G 67
++++HP F ++W ++ ++ PP P FD +FD+E
Sbjct: 250 GDIRQHPLFREINWEELERKEIDPPFRP-----KVKSPFDCSNFDKEFLNEKPRLSFADR 304
Query: 68 IKLTEADQDLYKNF 81
+ DQ++++NF
Sbjct: 305 ALINSMDQNMFRNF 318
>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 350
Score = 52.5 bits (125), Expect = 4e-10
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLTEADQD 76
+++K H +F DW +Y +K P IP FD ++EE+ + + + E
Sbjct: 289 NDIKNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFD--DYEEEEIR-VSINEKCGK 345
Query: 77 LYKNF 81
+ F
Sbjct: 346 EFTEF 350
>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 337
Score = 50.2 bits (119), Expect = 3e-09
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDT-KGIKLTEADQ 75
EV EH FF ++W V +K PP P D FD+E T + I +T D+
Sbjct: 256 KEVMEHRFFLSINWQDVVQKKLLPPFKP-----QVTSEVDTRYFDDEFTAQSITITPPDR 310
Query: 76 -DLYKNFPLTISERLAEFRRF 95
D L E F F
Sbjct: 311 YDSLGLLELDQREEQEMFEDF 331
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 42.1 bits (98), Expect = 2e-06
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPP 45
DE+KEH FF ++W + +K P P
Sbjct: 287 DEIKEHLFFQKINWDDLAAKKVPAPFKPV 315
>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein
kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 38.1 bits (88), Expect = 5e-05
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 10 IQQQLRSDEVKEHPFFTGLDWTQVYMQKYTPPLIP 44
++ +K HPFF + W ++ Q PP +
Sbjct: 255 CEEMEGYGPLKAHPFFESVTWENLHQQT--PPKLT 287
>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human
(Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 35.1 bits (80), Expect = 5e-04
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPP 41
+ +HP+ D Q ++ P
Sbjct: 266 QDSLQHPWIKPKDTQQALSSAWSHP 290
>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein
kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 322
Score = 30.8 bits (69), Expect = 0.019
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKY 38
++ H F D +V +
Sbjct: 293 KQLMVHAFIKRSDAEEVDFAGW 314
>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit
{Rattus norvegicus [TaxId: 10116]}
Length = 328
Score = 27.5 bits (60), Expect = 0.29
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 17 DEVKEHPFFTGLDW 30
E EHP+F +
Sbjct: 314 REAMEHPYFYTVVK 327
>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 307
Score = 25.8 bits (56), Expect = 0.96
Identities = 4/29 (13%), Positives = 10/29 (34%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPP 45
++ +HP+ G + + I
Sbjct: 259 EQALQHPWIAGDTALDKNIHQSVSEQIKK 287
>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 305
Score = 24.8 bits (53), Expect = 2.0
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 17 DEVKEHPFFTGLDWTQ 32
HP+F L+ +
Sbjct: 288 YSALSHPYFQDLERCK 303
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 263
Score = 23.8 bits (51), Expect = 5.0
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 17 DEVKEHPFFTG 27
EV EHP+ T
Sbjct: 250 REVLEHPWITA 260
>d1wjra_ b.34.9.3 (A:) Scm-like with four MBT domains protein 2,
SFMBT2 (KIAA1617) {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 23.3 bits (50), Expect = 5.1
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 41 PLIPPRGEVNAADAFDIGSFDEEDTKGIKLTEADQDLYKN 80
+ PP A + E+ +++K+
Sbjct: 78 RMDPPSEIYPLKMASEWKCTLEKSLIDAAKFPLPMEVFKD 117
>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 258
Score = 23.4 bits (50), Expect = 6.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 18 EVKEHPFFTGLDW 30
EV HP+F +
Sbjct: 216 EVPNHPWFVACQF 228
>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain
{Caenorhabditis elegans, pjk4 [TaxId: 6239]}
Length = 350
Score = 23.5 bits (50), Expect = 6.7
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 17 DEVKEHPFFTGLDW 30
+ EHP+ T +
Sbjct: 275 HQALEHPWLTPGNA 288
>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens)
[TaxId: 9606]}
Length = 346
Score = 23.2 bits (49), Expect = 7.5
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 17 DEVKEHPFFTGLDWTQ 32
E HP+F L T+
Sbjct: 296 GEALAHPYFESLHDTE 311
>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 250
Score = 23.1 bits (49), Expect = 8.7
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 18 EVKEHPFFTG 27
E+K+HPFF G
Sbjct: 212 ELKDHPFFLG 221
>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 345
Score = 22.9 bits (48), Expect = 9.4
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 10/56 (17%)
Query: 17 DEVKEHPFFTGLDWTQVYMQKYTPPLIPPRGEVNAADAFDIGSFDEEDTKGIKLTE 72
++ HP+ ++Y P P E ++ +E K + E
Sbjct: 290 EQALAHPYL----------EQYYDPSDEPIAEAPFKFDMELDDLPKEKLKELIFEE 335
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.402
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,035
Number of extensions: 15762
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 28
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.5 bits)