Query psy10000
Match_columns 193
No_of_seqs 292 out of 1370
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 15:20:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zkq_q 40S ribosomal protein S 100.0 5.6E-70 1.9E-74 443.7 9.3 157 1-193 1-158 (158)
2 3u5c_L RP41, S18, YS12, 40S ri 100.0 1.1E-68 3.6E-73 435.3 14.4 150 43-193 6-156 (156)
3 2xzm_Q Ribosomal protein S17 c 100.0 1.8E-68 6.2E-73 434.5 14.9 154 1-193 1-157 (157)
4 3iz6_P 40S ribosomal protein S 100.0 2E-68 6.7E-73 435.6 -3.3 155 1-192 1-160 (161)
5 3j20_R 30S ribosomal protein S 100.0 2.5E-53 8.5E-58 329.9 13.8 110 72-186 2-111 (113)
6 3bbn_Q Ribosomal protein S17; 100.0 1.4E-41 4.8E-46 272.4 9.0 92 92-185 46-138 (142)
7 1qd7_I S17 ribosomal protein; 100.0 8.4E-35 2.9E-39 217.6 11.5 79 105-185 2-80 (89)
8 3r8n_Q 30S ribosomal protein S 100.0 1.7E-34 5.7E-39 212.2 5.8 77 106-184 3-79 (80)
9 2vqe_Q 30S ribosomal protein S 100.0 2.4E-33 8.2E-38 215.3 11.1 79 105-185 3-81 (105)
10 3u5c_L RP41, S18, YS12, 40S ri 99.7 2.6E-18 8.9E-23 139.6 1.1 59 3-63 7-66 (156)
11 3iz6_P 40S ribosomal protein S 98.6 4.7E-09 1.6E-13 85.7 0.3 38 26-63 29-67 (161)
12 2zkq_q 40S ribosomal protein S 98.5 9.5E-09 3.3E-13 83.6 0.0 38 26-63 30-68 (158)
13 2xzm_Q Ribosomal protein S17 c 98.4 7.9E-08 2.7E-12 78.1 1.1 36 28-63 29-65 (157)
14 3j20_R 30S ribosomal protein S 96.6 0.00036 1.2E-08 53.9 0.1 27 34-63 3-29 (113)
15 2vb2_X Copper protein, cation 43.8 77 0.0026 22.4 6.5 68 107-181 17-85 (88)
16 2dgy_A MGC11102 protein; EIF-1 42.4 62 0.0021 24.2 6.0 56 107-176 16-75 (111)
17 2qcp_X Cation efflux system pr 42.1 32 0.0011 24.0 4.1 68 107-181 9-77 (80)
18 1d7q_A Translation initiation 31.4 1.9E+02 0.0064 22.6 7.5 59 107-179 32-93 (143)
19 2k4k_A GSP13, general stress p 28.9 1.1E+02 0.0037 22.7 5.5 65 105-180 8-79 (130)
20 2l9z_A PR domain zinc finger p 25.1 20 0.00067 22.6 0.5 18 84-102 15-32 (39)
21 2z1c_A Hydrogenase expression/ 24.1 1E+02 0.0035 21.4 4.2 13 154-166 35-47 (75)
22 3j21_c 50S ribosomal protein L 22.8 64 0.0022 23.4 3.0 62 54-122 4-67 (87)
23 1a62_A RHO; transcription term 22.6 1.1E+02 0.0038 23.1 4.5 32 154-185 90-121 (130)
24 2vl6_A SSO MCM N-TER, minichro 21.4 62 0.0021 26.7 3.1 25 140-165 211-235 (268)
No 1
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=5.6e-70 Score=443.73 Aligned_cols=157 Identities=78% Similarity=1.232 Sum_probs=74.3
Q ss_pred Ccc-chhhhhccCcceeeceecccccCCCccceeeccCcccccchhhhhhhccCcceeeecccccccccceeeeeecccc
Q psy10000 1 MAE-QNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGF 79 (193)
Q Consensus 1 m~~-q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~ 79 (193)
||+ |+|+|||||++||+|+++.+.++. ++++.+||++||||||
T Consensus 1 m~~~q~e~afqkq~~i~~~~~~~~~~~~------------------------------------~~~~~~r~~k~iGl~~ 44 (158)
T 2zkq_q 1 MADIQTERAYQKQPTIFQNKKRVLLGET------------------------------------GKEKLPRYYKNIGLGF 44 (158)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcchhhhhhhccCcceeecceehhcccc------------------------------------ccccCceEEEecccCc
Confidence 787 999999999999998886542211 1457789999999999
Q ss_pred cCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCC
Q psy10000 80 KTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGD 159 (193)
Q Consensus 80 ~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD 159 (193)
++|+|||+|+|||++|||||+|||||++|+|+|+|++|+|||+|+++|++|||+|+|+++|+++|+||||+|+|+|++||
T Consensus 45 k~P~~~~~~~~~D~kCPf~G~lsvRGr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n~~~kvGD 124 (158)
T 2zkq_q 45 KTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124 (158)
T ss_dssp --------------------------CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSCCCC-CCC
T ss_pred cCChHHhcccccCCCCCCccccceeeEEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCcccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999855799999
Q ss_pred EEEEeeeecCCCceeEEEEEEEecCccccccccC
Q psy10000 160 VVTVGECRPLSKTVRFNVLKVTKGTGSKKAFKKF 193 (193)
Q Consensus 160 ~V~I~ecRPlSKtK~f~V~~v~~~~~~~k~f~~~ 193 (193)
+|+|+|||||||||+|+|++|++++++++||++|
T Consensus 125 ~V~I~E~RPLSKtKrw~Vv~I~~~~~~~k~f~~f 158 (158)
T 2zkq_q 125 IVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF 158 (158)
T ss_dssp EEEEECCSCSSSCC-CEEEEEEEC----------
T ss_pred EEEEEEccccCCcEEEEEEEEecCCCcchhhhcC
Confidence 9999999999999999999999988889999987
No 2
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=100.00 E-value=1.1e-68 Score=435.29 Aligned_cols=150 Identities=65% Similarity=1.086 Sum_probs=145.1
Q ss_pred chhhhhhhccCcceeeecccccccccceeeeeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEE
Q psy10000 43 PRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIV 122 (193)
Q Consensus 43 P~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvv 122 (193)
..|+|+|||||++||+|+++..+++.+||++||||||++|++||||+|||++|||||||||||++|+|+|+|++|+|||+
T Consensus 6 ~~q~e~a~qkq~~i~~~~~~~~~~~~~r~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsvRgr~l~G~VVS~KMdKTIv 85 (156)
T 3u5c_L 6 TVQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIV 85 (156)
T ss_dssp CSSCSSSCCCCTTCCCCSSSCCSSSSCCCCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCEEEEEEEEEEEECCSTTEEE
T ss_pred hhhhhhhhccCcceeecccccccccCceeeeecCcCccCChhhccceeccccCCcccceeEeeEEEEEEEEeecCCCeEE
Confidence 34779999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecCc-cccccccC
Q psy10000 123 IRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTG-SKKAFKKF 193 (193)
Q Consensus 123 V~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~~-~~k~f~~~ 193 (193)
|+++|++|||+|+||++|+++|+||||+|+ +|++||+|+|+|||||||||+|+|++|+++++ +++||++|
T Consensus 86 V~ve~~~~hpkY~K~vkr~kKy~AHDe~~n-~~kvGD~V~I~EcRPLSKtKrw~Vv~Iv~ka~~~~k~f~~f 156 (156)
T 3u5c_L 86 IRRAYLHYIPKYNRYEKRHKNVPVHVSPAF-RVQVGDIVTVGQCRPISKTVRFNVVKVSAAAGKANKQFAKF 156 (156)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEEECCTTS-CCCTTCEEEEEEEEEEETTEEEEEEEECCCCSSSGGGCCCC
T ss_pred EEEEEEeecCccceEEECceEEEEECCCcC-cCCCCCEEEEEecccCCCcEeEEEEEEEecCCCcccccccC
Confidence 999999999999999999999999999884 89999999999999999999999999999984 89999998
No 3
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=100.00 E-value=1.8e-68 Score=434.49 Aligned_cols=154 Identities=60% Similarity=1.051 Sum_probs=139.9
Q ss_pred CccchhhhhccCcceeeceecccccCCCccceeeccCcccccchhhhhhhccCcceeeecccccccccceeeeeeccccc
Q psy10000 1 MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFK 80 (193)
Q Consensus 1 m~~q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~~ 80 (193)
||+|+|+|||||++||+|+++.+.+ .++++.||++||||||+
T Consensus 1 m~~q~e~a~qkq~~i~~~~~~~~~~--------------------------------------~~~~~~r~~k~iGl~~k 42 (157)
T 2xzm_Q 1 MDTQIQRAYQKQDGVFLNSKKLLAK--------------------------------------KTSAGVRYYKNIGLGFK 42 (157)
T ss_dssp CTTTTSSSSCCCCSSCCGGGGGGSS--------------------------------------CCSSSCCCCCCCCSSCC
T ss_pred CcchhhHhhccCcceeecceehhcc--------------------------------------ccccCceeEEecccCCc
Confidence 8889999999999889888755321 13466788888888888
Q ss_pred CCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCE
Q psy10000 81 TPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDV 160 (193)
Q Consensus 81 ~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~ 160 (193)
+|+|||+|+|||++|||||+|||||++|+|+|+|++|+|||+|++++++|||+|+|+++|+++|+||||+|+ +|++||+
T Consensus 43 ~P~~~~~~~~~D~kCPf~G~lsvRgr~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n-~~kvGD~ 121 (157)
T 2xzm_Q 43 TPKEAIEGTYVDKKCPFTSNLSIRGKIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCF-SVKEGDI 121 (157)
T ss_dssp CCHHHHTCCCCCTTCSSSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTS-CCCTTCE
T ss_pred CChHHhcccccCCCCCCccceeeeeEEEEEEEEEecCCccEEEEEEEEEecCccceEeecceeEEEECCCCC-CCCCCCE
Confidence 899999999999999999999999999999999999999999999999999999999999999999998884 8999999
Q ss_pred EEEeeeecCCCceeEEEEEEEecC--c-cccccccC
Q psy10000 161 VTVGECRPLSKTVRFNVLKVTKGT--G-SKKAFKKF 193 (193)
Q Consensus 161 V~I~ecRPlSKtK~f~V~~v~~~~--~-~~k~f~~~ 193 (193)
|+|+|||||||||+|+|++|++++ | +++||++|
T Consensus 122 V~I~EcRPLSKtKrw~Vv~I~~ka~~g~~~k~f~~f 157 (157)
T 2xzm_Q 122 LVAGQCRPISKTVRFNALQVVPNEIIGSVRKQFLLF 157 (157)
T ss_dssp EEEEECCCCSSSCCEEEEEECCCCCCSCTTTCCCCC
T ss_pred EEEEEcCCCCCcEEEEEEEEEeccccCccchhhhcC
Confidence 999999999999999999999875 3 68999987
No 4
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-68 Score=435.59 Aligned_cols=155 Identities=61% Similarity=1.020 Sum_probs=83.2
Q ss_pred CccchhhhhccCcceeeceecccccCCCccceeeccCcccccchhhhhhhccCcceeeecccccccccceeeeeeccccc
Q psy10000 1 MAEQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRETERAFQKQPTIFLARKPTYKKKSLRYHKTVGLGFK 80 (193)
Q Consensus 1 m~~q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~~~~~~~r~~~~igl~~~ 80 (193)
||+|+|+|||||++||+|+++.+.+ ...+++.+||++||||||+
T Consensus 1 ~~~q~e~a~qkq~~i~~~~k~~~~~------------------------------------~~~~~~~~r~~k~iGl~~k 44 (161)
T 3iz6_P 1 MAEQTEKAFLKQPKVFLSSKKSGKG------------------------------------KKPGKGGNRFWKSIGLGFK 44 (161)
T ss_dssp ---------------------------------------------------------------------------CCCCC
T ss_pred CcchhhhhhccCccceecceecccc------------------------------------ccccccCceEEEecCcCCC
Confidence 8999999999999999998864321 0124567788899999999
Q ss_pred CCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCE
Q psy10000 81 TPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDV 160 (193)
Q Consensus 81 ~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~ 160 (193)
+|++||||+|||++|||||||||||++|+|+|+|++|+|||+|+++|++|||+|+||++|+++|+||||+|+ +|++||+
T Consensus 45 ~P~~a~~g~y~D~kCPf~G~lsiRgril~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n-~~kvGD~ 123 (161)
T 3iz6_P 45 TPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCF-RVKEGDH 123 (161)
T ss_dssp CEEEECCCCSSSSCCSEEEEEEEEEEECTTTCCEEEEEEEEEEECTTCCCCSSCEEEEEECCCSSSSCCEEE-EECCCCC
T ss_pred CChHHhcCcccccCCCccceeEEeeEEEEEEEEeccCCCeEEEEEEEEEecCccceEEECceeEEEECCCCC-cCCCCCE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874 8999999
Q ss_pred EEEeeeecCCCceeEEEEEEEecCcc-----cccccc
Q psy10000 161 VTVGECRPLSKTVRFNVLKVTKGTGS-----KKAFKK 192 (193)
Q Consensus 161 V~I~ecRPlSKtK~f~V~~v~~~~~~-----~k~f~~ 192 (193)
|+|+|||||||||+|+|++|++++.. ++||..
T Consensus 124 V~I~EcRPLSKtKrw~Vv~Iv~~~~~~~~~~~k~f~~ 160 (161)
T 3iz6_P 124 VIIGQCRPLSKTVRFNVLKVIPAGSTGGSGGKKAFTA 160 (161)
T ss_dssp C------------------------------------
T ss_pred EEEEeccCCCCcEeEEEEEEEecCcccccccchhccc
Confidence 99999999999999999999998533 688864
No 5
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-53 Score=329.87 Aligned_cols=110 Identities=37% Similarity=0.709 Sum_probs=105.2
Q ss_pred eeeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCC
Q psy10000 72 HKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPA 151 (193)
Q Consensus 72 ~~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~ 151 (193)
|+||||||++|+++ |+|++|||||||||||++|+|+|+|++|+|||+|+++|++|||+|+||++++++|+||||||
T Consensus 2 m~~igl~~~~p~~~----~~d~~cPf~G~~~vrgr~l~G~VvS~KM~KTivV~ve~~~~hpkY~K~~kr~kk~~aHDe~~ 77 (113)
T 3j20_R 2 MRDIGLRVQPPAEK----CDDPKCPWHGNLKIHGRVFEGIVVSDKPRKTVTVERQYYFYLNKYERYELRRSKIHAHNPPC 77 (113)
T ss_dssp CCCCCTTCCCCSSC----CCCSSSTTSSSCCCCSCEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTT
T ss_pred chhcCCCCCCCccc----ccCCCCCCcceeeEeeEEEEEEEEeccCCceEEEEEEEEEEcCcccEEEECceEEEEECCCC
Confidence 68999999999755 55999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCEEEEeeeecCCCceeEEEEEEEecCcc
Q psy10000 152 FRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGTGS 186 (193)
Q Consensus 152 ~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~~~ 186 (193)
+ +|++||+|+|+|||||||||+|+|++|+++|..
T Consensus 78 n-~~~vGD~V~I~E~RPlSKtKr~~vv~i~~~a~~ 111 (113)
T 3j20_R 78 I-NAKVGDKVLIAETRPLSKTKHFVVVAVLERAEE 111 (113)
T ss_dssp S-CCCTTSEEEEEECSCSSSSEEEEEEEECCCCCC
T ss_pred C-CCCCCCEEEEEecccCCCcEeEEEEEEEecccc
Confidence 4 999999999999999999999999999999864
No 6
>3bbn_Q Ribosomal protein S17; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.4e-41 Score=272.44 Aligned_cols=92 Identities=24% Similarity=0.274 Sum_probs=76.4
Q ss_pred CcCCCceeeeeeec-eEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCC
Q psy10000 92 DKKCPFTGNVSIRG-RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLS 170 (193)
Q Consensus 92 d~~cPf~g~~~irg-~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlS 170 (193)
|++|||||+|+||| ++|.|+|+|++|+|||+|++++++|||+|+||++++++|+||||+| +|++||+|+|+||||||
T Consensus 46 ~~~cP~~G~lsvrg~k~l~G~VVS~KMdKTIvV~Ver~~~hpkY~K~vkr~kKy~AHDe~n--~~kvGD~V~I~E~RPLS 123 (142)
T 3bbn_Q 46 PNHRMPALVPVIRAMKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDN--QFKVGDVVRLEKSRPIS 123 (142)
T ss_dssp --------------CCEEEEEEEECCSTTEEEEEEEEEEECSSSCSEEEEEEEEEEECTTC--CCCTTEEEEEEECCCSS
T ss_pred CCcCCCCccccccceEEEEEEEEEccCCceEEEEEEEEEEcCccccEEecceEEEEECCCC--CCCCCCEEEEEEccCCC
Confidence 99999999999999 9999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred CceeEEEEEEEecCc
Q psy10000 171 KTVRFNVLKVTKGTG 185 (193)
Q Consensus 171 KtK~f~V~~v~~~~~ 185 (193)
|+|+|+|++|++++.
T Consensus 124 KtKrw~VveIveka~ 138 (142)
T 3bbn_Q 124 KTKSFVALPVIARAA 138 (142)
T ss_dssp SSCCEEECCCSEEEC
T ss_pred CcEEEEEEEEEeccc
Confidence 999999999998875
No 7
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=100.00 E-value=8.4e-35 Score=217.59 Aligned_cols=79 Identities=25% Similarity=0.409 Sum_probs=76.1
Q ss_pred ceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000 105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT 184 (193)
Q Consensus 105 g~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~ 184 (193)
.++|+|+|+|++|+|||+|+++++++||+|+||++++++|+||||+| +|++||+|+|+|||||||||+|+|++|++++
T Consensus 2 ~k~l~G~VvS~Km~KTivV~ve~~~~hp~Y~K~~kr~kk~~aHDe~n--~~k~GD~V~I~E~RPlSKtK~~~vv~iv~~a 79 (89)
T 1qd7_I 2 RKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHN--EAKVGDIVKIMETRPLSATKRFRLVEIVEKA 79 (89)
T ss_pred cEEEEEEEEecCCCceEEEEEEEEEEcCccceEEeccEEEEEeCCcc--CCCCCCEEEEEEcccCCCCEEEEEEEEEeec
Confidence 47999999999999999999999999999999999999999999998 8999999999999999999999999999876
Q ss_pred c
Q psy10000 185 G 185 (193)
Q Consensus 185 ~ 185 (193)
.
T Consensus 80 ~ 80 (89)
T 1qd7_I 80 V 80 (89)
T ss_pred e
Confidence 3
No 8
>3r8n_Q 30S ribosomal protein S17; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_Q 3fih_Q* 3iy8_Q 3j18_Q* 2wwl_Q 3oar_Q 3oaq_Q 3ofb_Q 3ofa_Q 3ofp_Q 3ofx_Q 3ofy_Q 3ofo_Q 3r8o_Q 4a2i_Q 4gd1_Q 4gd2_Q 3i1m_Q 1vs7_Q* 3e1a_J ...
Probab=100.00 E-value=1.7e-34 Score=212.17 Aligned_cols=77 Identities=36% Similarity=0.572 Sum_probs=74.4
Q ss_pred eEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000 106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT 184 (193)
Q Consensus 106 ~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~ 184 (193)
++|+|+|+|++|+|||+|+++++++||+|+||++++++|+||||.+ +|++||+|+|+|||||||||+|+|++|++++
T Consensus 3 r~l~G~VvS~km~KTvvV~v~~~~~hp~Y~K~~kr~kk~~aHDe~n--~~~~GD~V~I~e~RPlSKtk~~~v~~i~~~~ 79 (80)
T 3r8n_Q 3 RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENN--ECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 79 (80)
T ss_dssp SCBCCEEEECCSTTCCEEECCEEEEETTTEEEEEECCEEECBCGGG--CCCTTCEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred eEEEEEEEecCCCCeEEEEEEEEEEcccccccEEecceEEEECCCC--CCCCCCEEEEEEeccCCCcEeEEEEEEEEec
Confidence 6899999999999999999999999999999999999999999864 8999999999999999999999999999876
No 9
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T* 1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q 1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q* 1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Probab=100.00 E-value=2.4e-33 Score=215.27 Aligned_cols=79 Identities=30% Similarity=0.464 Sum_probs=76.1
Q ss_pred ceEEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEEecC
Q psy10000 105 GRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVTKGT 184 (193)
Q Consensus 105 g~~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~ 184 (193)
.++|+|+|+|++|+|||+|++++++|||+|+||++++++|+||||+| +|++||+|+|+|||||||||+|+|++|++++
T Consensus 3 ~k~l~G~VvS~Km~KTivV~ver~~~hpkY~K~~kr~kk~~aHDe~n--~~k~GD~V~I~E~RPlSKtKr~~vv~iv~~a 80 (105)
T 2vqe_Q 3 KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEE--KYKLGDVVEIIESRPISKRKRFRVLRLVESG 80 (105)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEEEEEECTTC--CCCTTCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ceEEEEEEEecCCCcEEEEEEEEEEEcCccceEEecceEEEEECCCC--CCCCCCEEEEEEcccCCCCEEEEEEEEeecc
Confidence 37999999999999999999999999999999999999999999996 8999999999999999999999999999887
Q ss_pred c
Q psy10000 185 G 185 (193)
Q Consensus 185 ~ 185 (193)
.
T Consensus 81 ~ 81 (105)
T 2vqe_Q 81 R 81 (105)
T ss_dssp C
T ss_pred c
Confidence 4
No 10
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=99.69 E-value=2.6e-18 Score=139.58 Aligned_cols=59 Identities=34% Similarity=0.643 Sum_probs=53.2
Q ss_pred cchhhhhccCcceeeceecccccCCCccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000 3 EQNERSFQKQPTVFLNRKKGLSKKRKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT 63 (193)
Q Consensus 3 ~q~e~afqKQ~~if~~~k~~~~~~~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~ 63 (193)
+|+|+|||||++||+|++.. .+++..|||+||||||+||+|| ++.|+|.+|||++.-..
T Consensus 7 ~q~e~a~qkq~~i~~~~~~~--~~~~~~r~~~~iGl~~k~P~~a~~g~y~D~kCPf~G~lsv 66 (156)
T 3u5c_L 7 VQSERAFQKQPHIFNNPKVK--TSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSI 66 (156)
T ss_dssp SSCSSSCCCCTTCCCCSSSC--CSSSSCCCCCCCSTTCCCCHHHHHCCCCCTTCTTTSSCCE
T ss_pred hhhhhhhccCcceeeccccc--ccccCceeeeecCcCccCChhhccceeccccCCcccceeE
Confidence 39999999999999999953 3567889999999999999999 99999999999998753
No 11
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=98.62 E-value=4.7e-09 Score=85.66 Aligned_cols=38 Identities=29% Similarity=0.620 Sum_probs=25.1
Q ss_pred CCCccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000 26 KRKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT 63 (193)
Q Consensus 26 ~~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~ 63 (193)
+++..|||+||||||+||+|| ++.|+|..|||++.-..
T Consensus 29 ~~~~~r~~k~iGl~~k~P~~a~~g~y~D~kCPf~G~lsi 67 (161)
T 3iz6_P 29 GKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSI 67 (161)
T ss_dssp -----------CCCCCCEEEECCCCSSSSCCSEEEEEEE
T ss_pred cccCceEEEecCcCCCCChHHhcCcccccCCCccceeEE
Confidence 457889999999999999999 99999999999998753
No 12
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=98.54 E-value=9.5e-09 Score=83.63 Aligned_cols=38 Identities=34% Similarity=0.702 Sum_probs=0.0
Q ss_pred CCCccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000 26 KRKELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT 63 (193)
Q Consensus 26 ~~k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~ 63 (193)
+++..||||||||||+||+|| ++.|.|.+|||.+.-..
T Consensus 30 ~~~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsv 68 (158)
T 2zkq_q 30 KEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSI 68 (158)
T ss_dssp ---------------------------------------
T ss_pred cccCceEEEecccCccCChHHhcccccCCCCCCccccce
Confidence 367899999999999999999 99999999999998653
No 13
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=98.35 E-value=7.9e-08 Score=78.13 Aligned_cols=36 Identities=31% Similarity=0.736 Sum_probs=33.1
Q ss_pred CccceeeccCcccccchhh-hhhhccCcceeeecccc
Q psy10000 28 KELRYFRDVGLGFKSPRET-ERAFQKQPTIFLARKPT 63 (193)
Q Consensus 28 k~~R~~K~IGLGfKtP~eA-e~ayqKQ~~if~~~~~~ 63 (193)
+..||||||||||+||.|| ++.|.|.+|||.+.-..
T Consensus 29 ~~~r~~k~iGl~~k~P~~~~~~~~~D~kCPf~G~lsv 65 (157)
T 2xzm_Q 29 AGVRYYKNIGLGFKTPKEAIEGTYVDKKCPFTSNLSI 65 (157)
T ss_dssp SSCCCCCCCCSSCCCCHHHHTCCCCCTTCSSSSSCCC
T ss_pred cCceeEEecccCCcCChHHhcccccCCCCCCccceee
Confidence 4679999999999999999 99999999999998754
No 14
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=96.58 E-value=0.00036 Score=53.89 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.9
Q ss_pred eccCcccccchhhhhhhccCcceeeecccc
Q psy10000 34 RDVGLGFKSPRETERAFQKQPTIFLARKPT 63 (193)
Q Consensus 34 K~IGLGfKtP~eAe~ayqKQ~~if~~~~~~ 63 (193)
+||||||+||+ ++|.|..|||++.-..
T Consensus 3 ~~igl~~~~p~---~~~~d~~cPf~G~~~v 29 (113)
T 3j20_R 3 RDIGLRVQPPA---EKCDDPKCPWHGNLKI 29 (113)
T ss_dssp CCCCTTCCCCS---SCCCCSSSTTSSSCCC
T ss_pred hhcCCCCCCCc---ccccCCCCCCcceeeE
Confidence 79999999995 5699999999998764
No 15
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=43.85 E-value=77 Score=22.38 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=42.3
Q ss_pred EEEEEEEec-cCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEE
Q psy10000 107 ILIGIVRKM-KMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVT 181 (193)
Q Consensus 107 ~l~G~Vvs~-Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~ 181 (193)
...|+|.+- ...++|++.+.-.- .++ .---+-.|.+=|+..+..+++||.|.+.=.+-=+ .|+|.+|.
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~---~l~-wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~~---~~~it~i~ 85 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIA---AVN-WPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGN---LSLLQDIK 85 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBG---GGT-BCSEEEEEECCTTCEECCCCTTCEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcc---cCC-CCceEEEEEcCChhhhhcCCCCCEEEEEEEEeCC---EEEEEEEE
Confidence 578999985 66788999754321 111 0112334455566555679999999987654322 37777764
No 16
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.35 E-value=62 Score=24.18 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=38.2
Q ss_pred EEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCC---CCCCCCEEEEeeeecCC-CceeEE
Q psy10000 107 ILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFR---DVEIGDVVTVGECRPLS-KTVRFN 176 (193)
Q Consensus 107 ~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~---~~kvGD~V~I~ecRPlS-KtK~f~ 176 (193)
...|+|+..-.+....|.-+- -..++||.|.-|+ -+..||.|+|. .+|.. ++|-=+
T Consensus 16 e~~g~V~~~lgn~~f~V~l~n-------------G~~~la~i~GK~Rk~IwI~~GD~VlVe-~~~yd~~~kg~I 75 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQ-------------GQRFLVSMPSKYRKNIWIKRGDFLIVD-PIEEGEKVKAEI 75 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTT-------------SCEEEEECCTTCCSCCCCCSSCEEEEE-ECSSCSSCCEEE
T ss_pred eEEEEEEEeCCCCEEEEEeCC-------------CCEEEEEechhhcccEEEcCCCEEEEE-ecccCCcceEEE
Confidence 467999998877777775432 1335788887664 27889999987 45776 555433
No 17
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=42.07 E-value=32 Score=23.99 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=42.4
Q ss_pred EEEEEEEec-cCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEEEeeeecCCCceeEEEEEEE
Q psy10000 107 ILIGIVRKM-KMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRFNVLKVT 181 (193)
Q Consensus 107 ~l~G~Vvs~-Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~I~ecRPlSKtK~f~V~~v~ 181 (193)
...|+|.+- ...++|++.+.-.- .++ .---+-.|.+-|+..+..+++||.|.+.=.+-=+ .|+|.+|.
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~---~l~-wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~~---~~~it~i~ 77 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIA---AVN-WPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGN---LSLLQDIK 77 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBG---GGT-BCSEEEEEECCTTCEECCCCTTCEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcc---cCC-CCceEEEEEccChhhhhcCCCCCEEEEEEEEeCC---EEEEEEEE
Confidence 468999984 67788999764321 111 0122334556566555679999999987654322 37777764
No 18
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=31.36 E-value=1.9e+02 Score=22.61 Aligned_cols=59 Identities=19% Similarity=0.061 Sum_probs=39.9
Q ss_pred EEEEEEEeccCCceEEEEEeEEeeecceeeEEeeeeeEEEEcCCCCC---CCCCCCEEEEeeeecCCCceeEEEEE
Q psy10000 107 ILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFR---DVEIGDVVTVGECRPLSKTVRFNVLK 179 (193)
Q Consensus 107 ~l~G~Vvs~Km~KTvvV~~~~~~~~~KYkk~~kr~kk~~vHd~~~~~---~~kvGD~V~I~ecRPlSKtK~f~V~~ 179 (193)
.+.|+|+..-.+....|.-+-- ..++||.|.-|+ -+..||.|+|.. +|...+|-=++..
T Consensus 32 e~~g~V~e~lgn~~f~V~l~nG-------------~~~La~I~GKmRk~IwI~~GD~VlVe~-~~yd~~KG~Ii~r 93 (143)
T 1d7q_A 32 QEYAQVIKMLGNGRLEAMCFDG-------------VKRLCHIRGKLRKKVWINTSDIILVGL-RDYQDNKADVILK 93 (143)
T ss_dssp EEEEEEEEECSSSEEEEEETTT-------------EEEEEECCSGGGGSCCCCTTCEEEEEC-SSSSSSCCEEEEE
T ss_pred EEEEEEEEEcCCCEEEEEeCCC-------------CEEEEEecccceeeEEecCCCEEEEee-ccCCCCeEEEEEE
Confidence 4789999988777777764321 124677765543 378999999985 6888777544433
No 19
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=28.88 E-value=1.1e+02 Score=22.67 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=35.3
Q ss_pred ceEEEEEEEeccCCceEEEEEe----EE-eeecceeeEEeeeeeEEEEcCCCCCCCCCCCEEE--EeeeecCCCceeEEE
Q psy10000 105 GRILIGIVRKMKMQRTIVIRRD----YL-HYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVT--VGECRPLSKTVRFNV 177 (193)
Q Consensus 105 g~~l~G~Vvs~Km~KTvvV~~~----~~-~~~~KYkk~~kr~kk~~vHd~~~~~~~kvGD~V~--I~ecRPlSKtK~f~V 177 (193)
|.++.|+|++.. +--+.|..+ -+ |.......+ +.++.. .+++||.|. |....+-.....+.+
T Consensus 8 G~iv~G~V~~i~-~~G~FV~l~~~~~Glihisel~~~~--------~~~~~~--~~~vGd~V~vkV~~vd~~~~kI~LSl 76 (130)
T 2k4k_A 8 GSVYTGKVTGLQ-AYGAFVALDEETQGLVHISEVTHGF--------VKDINE--HLSVGDEVQVKVLAVDEEKGKISLSI 76 (130)
T ss_dssp TCEEEEEEEEEE-TTEEEEEEETTEEEEEEGGGTSSSC--------CSCGGG--TCCTTCEEEEEEEEEETTTTEEEEES
T ss_pred CCEEEEEEEEEe-CCeEEEEECCCcEEEEEHHHCCccc--------ccCccc--cCCCCCEEEEEEEEEeCCCCEEEEEE
Confidence 788999999873 445666542 11 111111111 112222 589999975 556666566556555
Q ss_pred EEE
Q psy10000 178 LKV 180 (193)
Q Consensus 178 ~~v 180 (193)
..+
T Consensus 77 k~~ 79 (130)
T 2k4k_A 77 RAT 79 (130)
T ss_dssp HHH
T ss_pred eec
Confidence 444
No 20
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=25.05 E-value=20 Score=22.61 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=12.2
Q ss_pred ccccccccCcCCCceeeee
Q psy10000 84 EAIDGTYIDKKCPFTGNVS 102 (193)
Q Consensus 84 ~~~~~~y~d~~cPf~g~~~ 102 (193)
|.|+ .|-+..||=||-+.
T Consensus 15 E~C~-~~~~~~Cp~HGP~~ 32 (39)
T 2l9z_A 15 TLCD-RAYPSDCPEHGPVT 32 (39)
T ss_dssp GGGT-EEESSSBTTTBSCS
T ss_pred HHHh-hhchhhchhcCCCc
Confidence 4565 44455699999864
No 21
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=24.08 E-value=1e+02 Score=21.42 Aligned_cols=13 Identities=38% Similarity=0.378 Sum_probs=10.7
Q ss_pred CCCCCCEEEEeee
Q psy10000 154 DVEIGDVVTVGEC 166 (193)
Q Consensus 154 ~~kvGD~V~I~ec 166 (193)
++.+||.|.|---
T Consensus 35 ~~~vGD~VLVH~G 47 (75)
T 2z1c_A 35 DTKPGDWVIVHTG 47 (75)
T ss_dssp TCCTTCEEEEETT
T ss_pred CCCCCCEEEEecc
Confidence 6899999998643
No 22
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=22.83 E-value=64 Score=23.43 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=39.6
Q ss_pred cceeeeccccccccc--ceeeeeecccccCCcccccccccCcCCCceeeeeeeceEEEEEEEeccCCceEE
Q psy10000 54 PTIFLARKPTYKKKS--LRYHKTVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILIGIVRKMKMQRTIV 122 (193)
Q Consensus 54 ~~if~~~~~~~~~~~--~r~~~~igl~~~~P~~~~~~~y~d~~cPf~g~~~irg~~l~G~Vvs~Km~KTvv 122 (193)
+++|++-++...... .-.++=- |+.+++||- .|+.++|-| ++-.|+.+-|.|+..-.+.-+|
T Consensus 4 Kg~~~gykRg~~nQ~~~taLlkie--GV~~~~~a~--fylGKrvay---v~~~g~~iwGKVtr~HGnsGvV 67 (87)
T 3j21_c 4 KGVVLSYRRSKENQHNNVMIIKPL--DVNSREEAS--KLIGRLVLW---KSPSGKILKGKIVRVHGTKGAV 67 (87)
T ss_dssp EEEEEEESCCSSCCCTTCEEEEES--SCCSHHHHG--GGTTCEEEE---CCSSSCCEEEEEEEECCSSSCE
T ss_pred eEEEEecccccCcCCCCeEEEEEc--CcCCHHHHH--hhcCceEEE---EeCCCCEEEEEEEeeeCCCCeE
Confidence 357777776422211 1222221 577777765 499999998 3446788999999987666554
No 23
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=22.59 E-value=1.1e+02 Score=23.10 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCCCCCEEEEeeeecCCCceeEEEEEEEecCc
Q psy10000 154 DVEIGDVVTVGECRPLSKTVRFNVLKVTKGTG 185 (193)
Q Consensus 154 ~~kvGD~V~I~ecRPlSKtK~f~V~~v~~~~~ 185 (193)
.+..||+|...-..|-..-+.|.|++|..-.+
T Consensus 90 ~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng 121 (130)
T 1a62_A 90 NLRTGDTISGKIRPPKEGERYFALLKVNEVNF 121 (130)
T ss_dssp TCCTTCEEEEEEECCCTTCCSEEEEEEEEETT
T ss_pred CCCCCCEEEEEEeCCCCCCcccceeEEEeECC
Confidence 69999999998888888889999999976443
No 24
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=21.37 E-value=62 Score=26.73 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=18.3
Q ss_pred eeeeEEEEcCCCCCCCCCCCEEEEee
Q psy10000 140 RHRNMSVHLSPAFRDVEIGDVVTVGE 165 (193)
Q Consensus 140 r~kk~~vHd~~~~~~~kvGD~V~I~e 165 (193)
|+-.+.++|.-+ +.|++||.|+|.-
T Consensus 211 rsi~v~l~~dLv-d~~~PGDrV~vtG 235 (268)
T 2vl6_A 211 RQLEIILEDDLV-DSARPGDRVKVTG 235 (268)
T ss_dssp CEEEEEEEGGGT-TSSCTTCEEEEEE
T ss_pred cEEEEEEccCcc-CcccCCCEEEEEE
Confidence 455566777765 4799999998654
Done!