RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10000
         (193 letters)



>d2uubq1 b.40.4.5 (Q:2-101) Ribosomal protein S17 {Thermus
           thermophilus [TaxId: 274]}
          Length = 100

 Score = 79.4 bits (196), Expect = 2e-20
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGE 165
           ++L G+V   KMQ+T+ +  +       Y +  KR +    H        ++GDVV + E
Sbjct: 3   KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPE--EKYKLGDVVEIIE 60

Query: 166 CRPLSKTVRFNVLKVTK 182
            RP+SK  RF VL++ +
Sbjct: 61  SRPISKRKRFRVLRLVE 77


>d2gy9q1 b.40.4.5 (Q:5-82) Ribosomal protein S17 {Escherichia coli
           [TaxId: 562]}
          Length = 78

 Score = 76.6 bits (189), Expect = 2e-19
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 106 RILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGE 165
           R L G V   KM+++IV+  +       Y +F KR   + VH      +  IGDVV + E
Sbjct: 1   RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDEN--NECGIGDVVEIRE 58

Query: 166 CRPLSKTVRFNVLKVTK 182
           CRPLSKT  + +++V +
Sbjct: 59  CRPLSKTKSWTLVRVVE 75


>d1ripa_ b.40.4.5 (A:) Ribosomal protein S17 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 81

 Score = 74.7 bits (184), Expect = 8e-19
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 104 RGRILIGIVRKMKMQRTIVIRRDYLHYIKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTV 163
           + ++ +G V   KM +TI +  +       Y +  K  +    H      + ++GD+V +
Sbjct: 1   QRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEH--NEAKVGDIVKI 58

Query: 164 GECRPLSKTVRFNVLKVTK 182
            E RPLS T RF ++++ +
Sbjct: 59  METRPLSATKRFRLVEIVE 77


>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 25.6 bits (56), Expect = 2.2
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 131 IKKYNRFEKRHRNMSVHLSPAFRDVEIGDVVTVGECRPLSKTVRF 175
           ++   +  +     SV  +    D  IGD V +G  +P    +RF
Sbjct: 1   VEHEQQVTESPSLASVPTADELFDFHIGDRVLIGNVQP--GILRF 43


>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 24.8 bits (54), Expect = 3.6
 Identities = 6/23 (26%), Positives = 11/23 (47%)

Query: 153 RDVEIGDVVTVGECRPLSKTVRF 175
             +E+G +  V E  P    +R+
Sbjct: 16  HGLEVGSLAEVKENPPFYGVIRW 38


>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP
           (histamine-releasing factor) {Plasmodium knowlesi
           [TaxId: 5850]}
          Length = 171

 Score = 25.1 bits (55), Expect = 4.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 109 IGIVRKMKMQRTIVIRRDYLHYIKKY 134
           I IV   ++  T + +++Y  YIK Y
Sbjct: 69  IDIVDSFQLTSTSLSKKEYSVYIKNY 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 730,530
Number of extensions: 35409
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 17
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.1 bits)