Query psy10002
Match_columns 145
No_of_seqs 123 out of 1086
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 15:23:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r94_A Protein YFHF; tetrameri 100.0 3.4E-37 1.2E-41 224.9 12.0 106 17-145 1-107 (118)
2 2d2a_A SUFA protein; iron-sulf 100.0 1.1E-36 3.7E-41 230.2 12.0 108 15-145 37-145 (145)
3 1nwb_A Hypothetical protein AQ 100.0 5.2E-37 1.8E-41 225.7 7.9 108 16-145 7-115 (124)
4 1x0g_A ISCA; [2Fe-2S], biosynt 100.0 6.7E-37 2.3E-41 221.0 6.9 106 18-145 1-109 (112)
5 2apn_A Protein HI1723; HI1723 100.0 3E-36 1E-40 218.0 7.9 107 17-145 7-114 (114)
6 2k4z_A DSRR; ISCA/SUFA/HESB li 99.9 2.5E-26 8.5E-31 169.3 11.9 99 15-138 19-121 (125)
7 2p2e_A Putative Fe-S biosynthe 99.8 3.4E-20 1.2E-24 137.0 7.2 95 17-135 3-116 (128)
8 2qgo_A Putative Fe-S biosynthe 99.7 6.3E-19 2.1E-23 132.4 4.8 90 15-132 2-103 (141)
9 1znf_A 31ST zinc finger from X 41.0 9.8 0.00034 17.5 0.9 9 136-144 3-12 (27)
10 1ard_A Yeast transcription fac 38.7 11 0.00038 17.5 0.9 9 136-144 4-13 (29)
11 1paa_A Yeast transcription fac 37.6 12 0.00042 17.6 1.0 9 136-144 4-13 (30)
12 2lvu_A Zinc finger and BTB dom 43.2 7.2 0.00025 18.1 0.0 9 136-144 4-13 (26)
13 2m0e_A Zinc finger and BTB dom 36.6 14 0.00049 17.0 1.2 9 136-144 4-13 (29)
14 2kvh_A Zinc finger and BTB dom 36.1 9.3 0.00032 17.8 0.4 9 136-144 5-14 (27)
15 1b77_A GP45, protein (sliding 35.7 1.6E+02 0.0054 23.1 7.7 95 18-118 115-217 (228)
16 2m0d_A Zinc finger and BTB dom 34.6 11 0.00036 17.7 0.4 9 136-144 5-14 (30)
17 1klr_A Zinc finger Y-chromosom 34.1 16 0.00054 17.0 1.1 9 136-144 4-13 (30)
18 2kvf_A Zinc finger and BTB dom 32.6 12 0.00041 17.5 0.4 9 136-144 5-14 (28)
19 1p7a_A BF3, BKLF, kruppel-like 31.5 18 0.00063 18.1 1.1 10 135-144 12-22 (37)
20 1rik_A E6APC1 peptide; E6-bind 31.0 13 0.00043 17.4 0.4 9 136-144 4-13 (29)
21 1rim_A E6APC2 peptide; E6-bind 30.8 19 0.00067 17.9 1.1 9 136-144 4-13 (33)
22 2m0f_A Zinc finger and BTB dom 30.5 13 0.00045 17.2 0.4 9 136-144 4-13 (29)
23 2lvr_A Zinc finger and BTB dom 35.5 11 0.00039 17.6 0.0 9 136-144 5-14 (30)
24 2elx_A Zinc finger protein 406 29.3 14 0.00049 18.1 0.4 9 136-144 9-18 (35)
25 2lvt_A Zinc finger and BTB dom 35.1 12 0.0004 17.7 0.0 9 136-144 4-13 (29)
26 2kvg_A Zinc finger and BTB dom 28.5 9.6 0.00033 18.0 -0.4 9 136-144 5-14 (27)
27 2kfq_A FP1; protein, de novo p 28.4 17 0.00059 17.9 0.6 9 136-144 4-13 (32)
28 2elr_A Zinc finger protein 406 27.9 33 0.0011 16.8 1.7 10 135-144 10-20 (36)
29 1sp2_A SP1F2; zinc finger, tra 27.0 23 0.00079 16.9 1.0 9 136-144 4-15 (31)
30 1aol_A GP70, SU; coat protein, 26.1 29 0.00098 27.4 1.8 40 18-68 180-219 (228)
31 1srk_A Zinc finger protein ZFP 25.4 19 0.00064 17.8 0.4 9 136-144 9-18 (35)
32 2elm_A Zinc finger protein 406 24.9 15 0.00052 18.8 -0.0 9 136-144 11-20 (37)
33 2ytb_A Zinc finger protein 32; 23.4 31 0.001 17.7 1.1 10 135-144 12-22 (42)
34 2rf4_B DNA-directed RNA polyme 23.3 43 0.0015 22.6 2.0 35 1-35 12-47 (87)
35 2els_A Zinc finger protein 406 22.9 22 0.00076 17.7 0.4 9 136-144 11-20 (36)
36 2eos_A B-cell lymphoma 6 prote 22.9 32 0.0011 17.8 1.1 10 135-144 12-22 (42)
37 1zfd_A SWI5; DNA binding motif 22.6 34 0.0012 16.3 1.1 9 136-144 5-16 (32)
38 2elo_A Zinc finger protein 406 22.6 16 0.00056 18.3 -0.2 10 135-144 10-20 (37)
39 2yte_A Zinc finger protein 473 22.4 31 0.0011 17.7 1.0 10 135-144 11-21 (42)
40 2elp_A Zinc finger protein 406 22.2 22 0.00077 17.8 0.3 9 136-144 11-20 (37)
41 1fv5_A First zinc finger of U- 22.1 17 0.00058 19.8 -0.2 10 135-144 9-19 (36)
42 2elt_A Zinc finger protein 406 21.9 23 0.0008 17.5 0.4 9 136-144 11-20 (36)
43 1njq_A Superman protein; zinc- 21.8 24 0.00082 18.0 0.4 9 136-144 8-17 (39)
44 2elv_A Zinc finger protein 406 21.6 24 0.00083 17.5 0.4 9 136-144 11-20 (36)
45 2en7_A Zinc finger protein 268 21.0 37 0.0013 17.6 1.1 10 135-144 13-23 (44)
46 2epc_A Zinc finger protein 32; 20.4 27 0.00092 18.0 0.4 10 135-144 12-22 (42)
47 2ep1_A Zinc finger protein 484 20.2 39 0.0013 17.7 1.1 10 135-144 13-23 (46)
48 3iuf_A Zinc finger protein UBI 20.2 27 0.00092 19.2 0.4 9 136-144 9-18 (48)
No 1
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=100.00 E-value=3.4e-37 Score=224.86 Aligned_cols=106 Identities=36% Similarity=0.730 Sum_probs=89.8
Q ss_pred cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002 17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHV 95 (145)
Q Consensus 17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~ 95 (145)
|+|+|||+|+ +|+++++.+ .++.+|||+|+++||+|++|.|.+++++.++|.+++.+
T Consensus 1 M~I~iT~~A~~~l~~ll~~~--------~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~-------------- 58 (118)
T 1r94_A 1 MSITLSDSAAARVNTFLANR--------GKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDK-------------- 58 (118)
T ss_dssp CCCEECHHHHHHHHHHHHHH--------CCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEET--------------
T ss_pred CceEECHHHHHHHHHHHhhC--------CCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEEC--------------
Confidence 6899999995 899999864 24688999999999999999999998788899999999
Q ss_pred CceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002 96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145 (145)
Q Consensus 96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~ 145 (145)
|++|+||+.+++||+|++|||++++.+++|+|.|||++++||||+||++
T Consensus 59 -Gv~v~vd~~s~~~L~g~~IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~ 107 (118)
T 1r94_A 59 -GVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107 (118)
T ss_dssp -TEEEEEEGGGHHHHTTCEEEEEEETTEEEEEEECTTCCC----------
T ss_pred -CEEEEEEHHHHHHhCCCEEEEEcCCCcCceEEeCCCCCCCCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999974
No 2
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=100.00 E-value=1.1e-36 Score=230.19 Aligned_cols=108 Identities=34% Similarity=0.697 Sum_probs=100.7
Q ss_pred cccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhcee
Q psy10002 15 LYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFF 93 (145)
Q Consensus 15 ~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~ 93 (145)
.||.|+|||+|+ +|+++++.+ .++.+|||+|+++||+|++|.|.|++++.++|.+++.+
T Consensus 37 ~~m~ItiTe~Aa~~lk~ll~~~--------~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~------------ 96 (145)
T 2d2a_A 37 AWQGLTLTPAAAIHIRELVAKQ--------PGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHD------------ 96 (145)
T ss_dssp CCCCCEECHHHHHHHHHHHHHS--------TTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEET------------
T ss_pred ccceEEECHHHHHHHHHHHhcC--------CCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEEC------------
Confidence 378899999995 899999874 34688999999999999999999998788899999999
Q ss_pred ecCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002 94 HVSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145 (145)
Q Consensus 94 ~~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~ 145 (145)
|++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus 97 ---Gv~v~VD~~s~~~L~G~~IDy~e~l~g~gF~f~NPna~~~CGCG~SF~v 145 (145)
T 2d2a_A 97 ---GAKLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145 (145)
T ss_dssp ---TEEEEEEGGGHHHHTTCEEEEEEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred ---CEEEEEeHHHHHhhCCCEEEEEcCCCcceEEEeCCCCCcccCCCCCccC
Confidence 9999999999999999999999999999999999999999999999975
No 3
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=100.00 E-value=5.2e-37 Score=225.75 Aligned_cols=108 Identities=31% Similarity=0.574 Sum_probs=86.9
Q ss_pred ccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceee
Q psy10002 16 YTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH 94 (145)
Q Consensus 16 ~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~ 94 (145)
.|+|+|||+|+ +|+++++.++ .++.+|||+|+++||+|++|.|.+++.+.++|.+++.+
T Consensus 7 ~m~I~iT~~A~~~l~~ll~~~~-------~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~------------- 66 (124)
T 1nwb_A 7 QFIFKVTDKAVEEIKKVAQENN-------IENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYD------------- 66 (124)
T ss_dssp CCCCEECHHHHHHHHHHHHTTT-------CSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCS-------------
T ss_pred CceEEECHHHHHHHHHHHhhCC-------CCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeC-------------
Confidence 57899999995 8999998753 34779999999999999999999998777889999988
Q ss_pred cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002 95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145 (145)
Q Consensus 95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~ 145 (145)
|++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus 67 --Gv~v~VD~~s~~~L~G~~IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~ 115 (124)
T 1nwb_A 67 --GVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 115 (124)
T ss_dssp --SSEEEECTTTGGGSTTCEEEEEEETTEEEEEEECC--------------
T ss_pred --CEEEEEehHHHHHhCCCEEEEEcCCCcceEEEeCCCCCcCCCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999974
No 4
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=100.00 E-value=6.7e-37 Score=221.01 Aligned_cols=106 Identities=29% Similarity=0.504 Sum_probs=93.5
Q ss_pred ceeeCHHHH-HHHHHHhhc-cccceeccCC-CceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceee
Q psy10002 18 GINLSDDRT-QIHGLLKIN-KIHCIIFISS-QAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFH 94 (145)
Q Consensus 18 ~I~IT~~A~-~l~~~l~~~-~~~~~~~~~~-~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~ 94 (145)
||+|||+|+ +|+++++.+ + .+ +.+|||+|+++||+|++|.|.+++.+.++|.+++.+
T Consensus 1 mi~iT~~A~~~l~~ll~~~~~-------~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~------------- 60 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVR-------RGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQ------------- 60 (112)
T ss_dssp CCEECHHHHHHTCCCC-----------------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSS-------------
T ss_pred CeEECHHHHHHHHHHHhhccC-------CCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeC-------------
Confidence 599999995 799998764 2 23 678999999999999999999998777889999998
Q ss_pred cCceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002 95 VSGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145 (145)
Q Consensus 95 ~~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~ 145 (145)
|++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus 61 --Gv~v~vd~~s~~~l~g~~IDy~~~~~g~gF~~~nPna~~~CgCG~SF~~ 109 (112)
T 1x0g_A 61 --GWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109 (112)
T ss_dssp --SCCEEECGGGHHHHTTCEEEEEEETTEEEEEEECTTCSEECSSSSEEEC
T ss_pred --CEEEEEeHHHHHHhCCCEEEEEecCCCCEEEEeCCCCCcCCCCCCcccc
Confidence 9999999999999999999999999999999999999999999999974
No 5
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=100.00 E-value=3e-36 Score=218.02 Aligned_cols=107 Identities=30% Similarity=0.617 Sum_probs=99.3
Q ss_pred cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhceeec
Q psy10002 17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHV 95 (145)
Q Consensus 17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~~~~ 95 (145)
|+|+|||+|+ +|+++++.++ .++.+|||+|+++||+|++|.|.+++.+.++|.+++.+
T Consensus 7 ~~i~iT~~A~~~i~~l~~~~~-------~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~-------------- 65 (114)
T 2apn_A 7 VPLTFTDAAANKVKSLISEEE-------NTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKS-------------- 65 (114)
T ss_dssp CSCEECSHHHHHHHHHHHHHT-------CSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECS--------------
T ss_pred CcEEECHHHHHHHHHHHHhCC-------CCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEEC--------------
Confidence 5699999995 8999998753 45789999999999999999999998777889999999
Q ss_pred CceEEEEcccchhhcCCcEEEEeecCCCcceEEeCCCCCCCCCCCCCcCC
Q psy10002 96 SGVRIFIDRKAQLTLLGTEMDYVENKLSSEFVFNNPNIKGTCGCGESFSV 145 (145)
Q Consensus 96 ~gi~v~ID~~s~~~L~g~~IDy~e~~~g~gF~~~nP~~~~~CgCG~Sf~~ 145 (145)
|++|+||+.+++||+|++|||++++.+++|+|+|||++++||||+||++
T Consensus 66 -Gv~v~id~~s~~~l~g~~IDy~~~~~g~~F~~~nPna~~~CgCG~SF~~ 114 (114)
T 2apn_A 66 -GVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 (114)
T ss_dssp -SSEEEECHHHHHHHTTCEEEEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred -CEEEEEehHHHHHhCCCEEEEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence 9999999999999999999999999999999999999999999999985
No 6
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}
Probab=99.94 E-value=2.5e-26 Score=169.32 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=90.3
Q ss_pred cccceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEe--cCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhc
Q psy10002 15 LYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQ--QRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTC 91 (145)
Q Consensus 15 ~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~--~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~ 91 (145)
..|+|+|||+|+ +|+++++.++ .++.+|||+|+ ++| |++|.|.|++. .++|.+++.+
T Consensus 19 ~~m~ItiT~~Aa~~ik~ll~~~~-------~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~---------- 78 (125)
T 2k4z_A 19 SHMMFKLTPAAAEQVLKAAKQGG-------TEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSE---------- 78 (125)
T ss_dssp CSSCEEECHHHHHHHHHHHHHSS-------STTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECS----------
T ss_pred CCCEEEECHHHHHHHHHHHhhCC-------CCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEEC----------
Confidence 468899999995 8999998753 34689999999 888 99999999987 7889999999
Q ss_pred eeecCceEEEEcccchhhcCCcEEEEee-cCCCcceEEeCCCCCCCCC
Q psy10002 92 FFHVSGVRIFIDRKAQLTLLGTEMDYVE-NKLSSEFVFNNPNIKGTCG 138 (145)
Q Consensus 92 ~~~~~gi~v~ID~~s~~~L~g~~IDy~e-~~~g~gF~~~nP~~~~~Cg 138 (145)
|++|+||+.+++||+|++|||++ ++.+++|+|.|||+++.|.
T Consensus 79 -----Gv~v~VD~~s~~~L~G~~IDy~~~~l~g~gF~~~NPna~~~~p 121 (125)
T 2k4z_A 79 -----GVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDPTYRP 121 (125)
T ss_dssp -----SCEEECCTTTHHHHTTEEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred -----CEEEEEeHHHHHhhCCCEEEEEeCCCCcCeEEECCCCCCccCC
Confidence 99999999999999999999999 9999999999999998885
No 7
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1
Probab=99.81 E-value=3.4e-20 Score=137.01 Aligned_cols=95 Identities=9% Similarity=0.107 Sum_probs=83.6
Q ss_pred cceeeCHHHH-HHHHHHhhccccceeccCCCceEEEEEecC-------CCCC-ceeeEEeccCCCC----CCeEEEecch
Q psy10002 17 TGINLSDDRT-QIHGLLKINKIHCIIFISSQAGLKVGVQQR-------GCNG-LSYTLNYAKDKEK----MDEEVIQDVK 83 (145)
Q Consensus 17 ~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~LRi~v~~g-------GC~G-~~y~l~l~~~~~~----~D~vv~~~~~ 83 (145)
|.|+|||+|+ +|+++++.+ .....||+. +++ ||+| ++|.|.+++++.+ .|.+++.+
T Consensus 3 M~ItlT~~A~~~l~~~l~~~--------~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~-- 71 (128)
T 2p2e_A 3 LKITVTDDAAKKLQRYTDDS--------NAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSN-- 71 (128)
T ss_dssp CEEEECHHHHHHHHHHHTCT--------TEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEET--
T ss_pred cEEEECHHHHHHHHHHHhcC--------CceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeC--
Confidence 6799999995 899999864 224689999 555 8999 6999999988777 89999999
Q ss_pred hhhhhhhceeecCceEEEEcccchhhcCC-cEEEEeecC----CCcc-eEEeCCCCCC
Q psy10002 84 YWALILTCFFHVSGVRIFIDRKAQLTLLG-TEMDYVENK----LSSE-FVFNNPNIKG 135 (145)
Q Consensus 84 ~~~~~~~~~~~~~gi~v~ID~~s~~~L~g-~~IDy~e~~----~g~g-F~~~nP~~~~ 135 (145)
|++|+||+.++.||+| ++|||+++. ++++ |+|.|||++.
T Consensus 72 -------------g~~v~vd~~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~~ 116 (128)
T 2p2e_A 72 -------------IGKFYYKGYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALSI 116 (128)
T ss_dssp -------------TSCEEECGGGGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEECE
T ss_pred -------------CEEEEECcchHHhhCCCeEEEEeCCCceEEecCCccEEECCCCee
Confidence 9999999999999996 999999998 8999 9999999863
No 8
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}
Probab=99.75 E-value=6.3e-19 Score=132.39 Aligned_cols=90 Identities=14% Similarity=0.263 Sum_probs=69.7
Q ss_pred cccceeeCHHHH-HHHHHHhhccccceeccCCCceE-------EEEEecCCCC-CceeeEEeccCCCCC-CeEEEecchh
Q psy10002 15 LYTGINLSDDRT-QIHGLLKINKIHCIIFISSQAGL-------KVGVQQRGCN-GLSYTLNYAKDKEKM-DEEVIQDVKY 84 (145)
Q Consensus 15 ~~~~I~IT~~A~-~l~~~l~~~~~~~~~~~~~~~~L-------Ri~v~~gGC~-G~~y~l~l~~~~~~~-D~vv~~~~~~ 84 (145)
+||.|+|||+|+ +|+++++.+ ....| |+.++++||+ |++|.|.+++++.++ |.+++.+
T Consensus 2 ~~M~ItlTd~Aa~~ik~~l~~~---------~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~--- 69 (141)
T 2qgo_A 2 SLLNIKFTDNAVDYLKRREILD---------KILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANE--- 69 (141)
T ss_dssp --CBEEECHHHHHHHHHTTCTT---------SEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCS---
T ss_pred cceEEEECHHHHHHHHHHHhhc---------cceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeC---
Confidence 589999999995 899999863 36788 9999999999 999999999888888 9998887
Q ss_pred hhhhhhceeecCc-eEEEEcccchhhcC-CcEEEEeecCCCcceEEeCCC
Q psy10002 85 WALILTCFFHVSG-VRIFIDRKAQLTLL-GTEMDYVENKLSSEFVFNNPN 132 (145)
Q Consensus 85 ~~~~~~~~~~~~g-i~v~ID~~s~~~L~-g~~IDy~e~~~g~gF~~~nP~ 132 (145)
| ++|+||+.+++||+ |++|||+++ .|.+++|.
T Consensus 70 ------------gGv~v~Vd~~sl~yLd~G~~IDy~~~----~l~Lks~s 103 (141)
T 2qgo_A 70 ------------QNVKIYTSDFDKTMLGPNMVMDYNAG----SLSLSSDE 103 (141)
T ss_dssp ------------SCCEEEECHHHHTTSCSSEEEEEETT----EEEEEETT
T ss_pred ------------CCEEEEECchHHHHhcCCCEEeEECC----EEEEcCCC
Confidence 6 99999999999999 999999964 67766653
No 9
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=41.02 E-value=9.8 Score=17.54 Aligned_cols=9 Identities=56% Similarity=1.387 Sum_probs=6.8
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 466 999885
No 10
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=38.71 E-value=11 Score=17.52 Aligned_cols=9 Identities=33% Similarity=1.136 Sum_probs=7.0
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 1ard_A 4 VCEVCTRAFA 13 (29)
T ss_dssp BCTTTCCBCS
T ss_pred ECCCCCcccC
Confidence 466 999986
No 11
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=37.56 E-value=12 Score=17.58 Aligned_cols=9 Identities=44% Similarity=1.501 Sum_probs=6.9
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1paa_A 4 ACGLCNRAFT 13 (30)
T ss_dssp BCTTTCCBCS
T ss_pred CCcccCcccC
Confidence 466 999885
No 12
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=43.18 E-value=7.2 Score=18.08 Aligned_cols=9 Identities=44% Similarity=1.324 Sum_probs=6.6
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (26)
T 2lvu_A 4 VCERCGKRFV 13 (26)
Confidence 465 898885
No 13
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=36.55 E-value=14 Score=16.95 Aligned_cols=9 Identities=33% Similarity=1.139 Sum_probs=6.9
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 466 999885
No 14
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=36.09 E-value=9.3 Score=17.83 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=6.7
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvh_A 5 SCSLCPQRSR 14 (27)
T ss_dssp ECSSSSCEES
T ss_pred cCCCcChhhC
Confidence 466 898885
No 15
>1b77_A GP45, protein (sliding clamp); replisome; 2.10A {Enterobacteria phage RB69} SCOP: d.131.1.2 d.131.1.2 PDB: 1b8h_A* 1czd_A* 3u5z_G* 3u60_G* 3u61_G*
Probab=35.69 E-value=1.6e+02 Score=23.09 Aligned_cols=95 Identities=11% Similarity=0.209 Sum_probs=59.6
Q ss_pred ceeeCHHH-HHHHHHHhhccccceeccCCCceEEEE----EecCCCCCceeeEEeccCCCCCCeEEEecchhhhhhhhce
Q psy10002 18 GINLSDDR-TQIHGLLKINKIHCIIFISSQAGLKVG----VQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCF 92 (145)
Q Consensus 18 ~I~IT~~A-~~l~~~l~~~~~~~~~~~~~~~~LRi~----v~~gGC~G~~y~l~l~~~~~~~D~vv~~~~~~~~~~~~~~ 92 (145)
.+.|+..- +||.+.-+.-+++-+-....+..|++. +...+=+.-.|.+.+.+-....|--+..+.+|.+++
T Consensus 115 ~F~L~~edl~ql~kas~~l~l~dl~~~~~~g~i~i~~~~~~~d~s~~~n~ysv~vge~~~~~~F~f~i~i~Nlk~i---- 190 (228)
T 1b77_A 115 ITEIKAEDLQQLLRVSRGLQIDTIAITNKDGKIVINGYNKVEDSGLTRPKYSLTLTDYDGSNNFNFVINMANMKIQ---- 190 (228)
T ss_dssp EEEECHHHHHHHHHHHHHTTCCEEEEEEETTEEEEEEECTTTCTTCCSCSEEEEEEECCCSCCEEEEEEGGGCCCC----
T ss_pred EEEECHHHHHHHHHHHHhcCCCeEEEEecCCEEEEEEeeccCCCCccCCceEEEeecccCCCceEEEEEhhheEec----
Confidence 46777776 567666665555544555567777776 333332446788887654334455666665554443
Q ss_pred eecCceEEEE---cccchhhcCCcEEEEe
Q psy10002 93 FHVSGVRIFI---DRKAQLTLLGTEMDYV 118 (145)
Q Consensus 93 ~~~~gi~v~I---D~~s~~~L~g~~IDy~ 118 (145)
.+.-+|.| .++-+..++|..+-|+
T Consensus 191 --~~dY~V~i~~~s~~~aa~F~~~~~~Y~ 217 (228)
T 1b77_A 191 --PGNYKVMLWGAGDKVAAKFESSQVSYV 217 (228)
T ss_dssp --SSCEEEEEEEETTEEEEEEECSSCEEE
T ss_pred --CCceEEEEEecChhhheeecCCCeeEE
Confidence 24577777 7777788888777776
No 16
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=34.62 E-value=11 Score=17.66 Aligned_cols=9 Identities=67% Similarity=1.534 Sum_probs=6.6
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 5 ~C~~C~~~f~ 14 (30)
T 2m0d_A 5 QCDYCGRSFS 14 (30)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCcccC
Confidence 466 898885
No 17
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=34.11 E-value=16 Score=16.95 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=6.8
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (30)
T 1klr_A 4 QCQYCEFRSA 13 (30)
T ss_dssp CCSSSSCCCS
T ss_pred cCCCCCCccC
Confidence 466 999885
No 18
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.59 E-value=12 Score=17.46 Aligned_cols=9 Identities=56% Similarity=1.542 Sum_probs=6.6
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 5 ~C~~C~k~f~ 14 (28)
T 2kvf_A 5 SCSVCGKRFS 14 (28)
T ss_dssp ECSSSCCEES
T ss_pred cCCCCCcccC
Confidence 466 888885
No 19
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=31.52 E-value=18 Score=18.09 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=7.6
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||.+|.
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 3577 999986
No 20
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=31.02 E-value=13 Score=17.38 Aligned_cols=9 Identities=33% Similarity=0.999 Sum_probs=6.5
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 1rik_A 4 ACPECPKRFM 13 (29)
T ss_dssp ECSSSSCEES
T ss_pred cCCCCCchhC
Confidence 466 888885
No 21
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.76 E-value=19 Score=17.88 Aligned_cols=9 Identities=33% Similarity=0.999 Sum_probs=7.1
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~k~F~ 13 (33)
T 1rim_A 4 ACPECPKRFM 13 (33)
T ss_dssp CCSSSCCCCS
T ss_pred cCCCCCchhC
Confidence 476 999986
No 22
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.54 E-value=13 Score=17.18 Aligned_cols=9 Identities=44% Similarity=1.427 Sum_probs=6.4
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2m0f_A 4 KCRECGKQFT 13 (29)
T ss_dssp ECTTTSCEES
T ss_pred cCCCCCCccC
Confidence 365 888885
No 23
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=35.47 E-value=11 Score=17.65 Aligned_cols=9 Identities=33% Similarity=0.969 Sum_probs=6.6
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 5 ~C~~C~k~f~ 14 (30)
T 2lvr_A 5 VCIHCQRQFA 14 (30)
Confidence 466 888885
No 24
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.29 E-value=14 Score=18.12 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=7.0
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 9 ~C~~C~k~f~ 18 (35)
T 2elx_A 9 VCALCLKKFV 18 (35)
T ss_dssp ECSSSCCEES
T ss_pred ECCCCcchhC
Confidence 576 998885
No 25
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=35.11 E-value=12 Score=17.65 Aligned_cols=9 Identities=44% Similarity=1.372 Sum_probs=6.6
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 4 ~C~~C~k~f~ 13 (29)
T 2lvt_A 4 QCVMCGKAFT 13 (29)
Confidence 466 898885
No 26
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.48 E-value=9.6 Score=17.98 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=6.4
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 5 ~C~~C~k~f~ 14 (27)
T 2kvg_A 5 RCPLCRAGCP 14 (27)
T ss_dssp EETTTTEEES
T ss_pred CCCCCCcccC
Confidence 465 888875
No 27
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=28.41 E-value=17 Score=17.90 Aligned_cols=9 Identities=33% Similarity=0.999 Sum_probs=6.9
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||++|.
T Consensus 4 ~C~~C~k~f~ 13 (32)
T 2kfq_A 4 ACPACPKRFM 13 (32)
T ss_dssp SSSSSCTTHH
T ss_pred CCCCCCcccC
Confidence 576 999884
No 28
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.90 E-value=33 Score=16.84 Aligned_cols=10 Identities=40% Similarity=1.178 Sum_probs=7.9
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||++|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 4677 999986
No 29
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.96 E-value=23 Score=16.91 Aligned_cols=9 Identities=44% Similarity=1.276 Sum_probs=7.3
Q ss_pred CC---CCCCCcC
Q psy10002 136 TC---GCGESFS 144 (145)
Q Consensus 136 ~C---gCG~Sf~ 144 (145)
.| .||++|.
T Consensus 4 ~C~~~~C~k~f~ 15 (31)
T 1sp2_A 4 MCTWSYCGKRFT 15 (31)
T ss_dssp BCCSTTCCCBCS
T ss_pred CCcCCCCCcccC
Confidence 57 5999996
No 30
>1aol_A GP70, SU; coat protein, viral glycoprotein, retrovirus, viral protein; HET: NAG; 2.00A {Friend murine leukemia virus} SCOP: b.20.1.1
Probab=26.12 E-value=29 Score=27.42 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=26.9
Q ss_pred ceeeCHHHHHHHHHHhhccccceeccCCCceEEEEEecCCCCCceeeEEec
Q psy10002 18 GINLSDDRTQIHGLLKINKIHCIIFISSQAGLKVGVQQRGCNGLSYTLNYA 68 (145)
Q Consensus 18 ~I~IT~~A~~l~~~l~~~~~~~~~~~~~~~~LRi~v~~gGC~G~~y~l~l~ 68 (145)
.|++|+++++.+.-.. ....+|||++ .+.-.|+.|.+.+.
T Consensus 180 kI~FTd~GK~~~~W~~----------G~~WGLRlY~-~G~dpG~~ftIrlk 219 (228)
T 1aol_A 180 AIQFTNAGKQVTSWTT----------GHYWGLRLYV-SGRDPGLTFGIRLR 219 (228)
T ss_dssp EEEECHHHHHCCGGGT----------CEEEEEEECC-TTTCCEEEEEEEEE
T ss_pred EEEecccccccccccC----------CcEeEEEEEe-cCCCceEEEEEEEE
Confidence 5899999976322221 3468999996 45557877777653
No 31
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.36 E-value=19 Score=17.79 Aligned_cols=9 Identities=33% Similarity=1.014 Sum_probs=6.8
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 9 ~C~~C~k~f~ 18 (35)
T 1srk_A 9 VCRICLSAFT 18 (35)
T ss_dssp ECSSSCCEES
T ss_pred eCCCCCcccC
Confidence 576 898885
No 32
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.87 E-value=15 Score=18.76 Aligned_cols=9 Identities=33% Similarity=0.556 Sum_probs=6.7
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 11 ~C~~C~k~f~ 20 (37)
T 2elm_A 11 YCSQCHYSSI 20 (37)
T ss_dssp ECSSSSCEEE
T ss_pred ECCCCCcccC
Confidence 466 888885
No 33
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.36 E-value=31 Score=17.72 Aligned_cols=10 Identities=50% Similarity=1.232 Sum_probs=7.7
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||.+|.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2ytb_A 12 YRCDQCGKAFS 22 (42)
T ss_dssp BCCTTTTCCBS
T ss_pred eeCCCccchhC
Confidence 3676 999986
No 34
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=23.28 E-value=43 Score=22.59 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=18.2
Q ss_pred CCCCCCCccccccccccceeeCHHHHH-HHHHHhhc
Q psy10002 1 MPMAFSTPTAFIYHLYTGINLSDDRTQ-IHGLLKIN 35 (145)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~I~IT~~A~~-l~~~l~~~ 35 (145)
+||+.|+|+..-.+....-.=++.|.+ |.++++..
T Consensus 12 ~~s~lNtPvvi~v~~~~q~v~~~eae~~L~~FI~~~ 47 (87)
T 2rf4_B 12 TATTLNTPVVIHATQLPQHVSTDEVLQFLESFIDEK 47 (87)
T ss_dssp ----CCCCCEEEESSCCEECCHHHHHHHHHHHHHHH
T ss_pred CccccCCCeEEEeecCCccCCHHHHHHHHHHHHHHH
Confidence 589999999985443222222345544 77777664
No 35
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.95 E-value=22 Score=17.67 Aligned_cols=9 Identities=44% Similarity=1.198 Sum_probs=6.8
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||++|.
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2els_A 11 TCEYCNKVFK 20 (36)
T ss_dssp ECTTTCCEES
T ss_pred ECCCCCceeC
Confidence 576 898885
No 36
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=32 Score=17.76 Aligned_cols=10 Identities=40% Similarity=1.046 Sum_probs=7.8
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||.+|.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2eos_A 12 YPCEICGTRFR 22 (42)
T ss_dssp BCCSSSCCCBS
T ss_pred EECCCCCCccC
Confidence 4677 999986
No 37
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.62 E-value=34 Score=16.29 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=7.2
Q ss_pred CCC---CCCCcC
Q psy10002 136 TCG---CGESFS 144 (145)
Q Consensus 136 ~Cg---CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 5 ~C~~~~C~k~f~ 16 (32)
T 1zfd_A 5 SCDHPGCDKAFV 16 (32)
T ss_dssp CCCCTTCCCCBS
T ss_pred cCcCCCCCCccC
Confidence 584 999986
No 38
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.59 E-value=16 Score=18.28 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=7.4
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||.+|.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elo_A 10 YSCPVCEKSFS 20 (37)
T ss_dssp CEETTTTEECS
T ss_pred cCCCCCCCccC
Confidence 3576 998885
No 39
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.44 E-value=31 Score=17.67 Aligned_cols=10 Identities=50% Similarity=1.139 Sum_probs=7.8
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||.+|.
T Consensus 11 ~~C~~C~k~f~ 21 (42)
T 2yte_A 11 YSCAECKETFS 21 (42)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCCccC
Confidence 4677 999986
No 40
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.16 E-value=22 Score=17.77 Aligned_cols=9 Identities=33% Similarity=0.792 Sum_probs=6.8
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 11 ~C~~C~k~f~ 20 (37)
T 2elp_A 11 KCPYCDFYFM 20 (37)
T ss_dssp ECSSSSCEEC
T ss_pred ECCCCChhhc
Confidence 576 888885
No 41
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=22.13 E-value=17 Score=19.82 Aligned_cols=10 Identities=50% Similarity=0.899 Sum_probs=7.7
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||++|.
T Consensus 9 ~~C~~CgK~F~ 19 (36)
T 1fv5_A 9 FMCLPCGIAFS 19 (36)
T ss_dssp CEETTTTEECS
T ss_pred eECCCCCCccC
Confidence 3576 999986
No 42
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.90 E-value=23 Score=17.46 Aligned_cols=9 Identities=22% Similarity=0.689 Sum_probs=6.7
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2elt_A 11 KCPQCSYASA 20 (36)
T ss_dssp ECSSSSCEES
T ss_pred CCCCCCcccC
Confidence 566 888885
No 43
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.84 E-value=24 Score=18.02 Aligned_cols=9 Identities=44% Similarity=1.191 Sum_probs=6.9
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 8 ~C~~C~k~f~ 17 (39)
T 1njq_A 8 TCSFCKREFR 17 (39)
T ss_dssp ECTTTCCEES
T ss_pred ECCCCCcccC
Confidence 576 998885
No 44
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.64 E-value=24 Score=17.50 Aligned_cols=9 Identities=33% Similarity=1.051 Sum_probs=6.8
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||.+|.
T Consensus 11 ~C~~C~k~f~ 20 (36)
T 2elv_A 11 DCHICERKFK 20 (36)
T ss_dssp ECSSSCCEES
T ss_pred ECCCCCCccC
Confidence 576 888885
No 45
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.96 E-value=37 Score=17.56 Aligned_cols=10 Identities=40% Similarity=1.168 Sum_probs=7.7
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||++|.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2en7_A 13 YVCNECGKAFR 23 (44)
T ss_dssp SCCTTTCCCCS
T ss_pred eECCCCCCccC
Confidence 4677 999986
No 46
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.36 E-value=27 Score=17.97 Aligned_cols=10 Identities=60% Similarity=1.424 Sum_probs=7.4
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||.+|.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2epc_A 12 YLCGQCGKSFT 22 (42)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 3576 998885
No 47
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.25 E-value=39 Score=17.73 Aligned_cols=10 Identities=50% Similarity=1.149 Sum_probs=7.9
Q ss_pred CCCC-CCCCcC
Q psy10002 135 GTCG-CGESFS 144 (145)
Q Consensus 135 ~~Cg-CG~Sf~ 144 (145)
-.|. ||.+|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ep1_A 13 YECSDCGKSFI 23 (46)
T ss_dssp SCCSSSCCCCS
T ss_pred cCCCCCCchhC
Confidence 4677 999986
No 48
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=20.24 E-value=27 Score=19.18 Aligned_cols=9 Identities=33% Similarity=1.350 Sum_probs=7.1
Q ss_pred CCC-CCCCcC
Q psy10002 136 TCG-CGESFS 144 (145)
Q Consensus 136 ~Cg-CG~Sf~ 144 (145)
.|. ||++|.
T Consensus 9 ~C~~C~k~F~ 18 (48)
T 3iuf_A 9 ACDICGKRYK 18 (48)
T ss_dssp ECTTTCCEES
T ss_pred ECCCcCcccC
Confidence 576 999885
Done!