RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10002
         (145 letters)



>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF)
           {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 60.4 bits (146), Expect = 1e-13
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 15/88 (17%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
           GL++GV+  GC+G++Y L +  +    D                 F   GV++ +D K+ 
Sbjct: 24  GLRLGVRTSGCSGMAYVLEFVDEPTPEDIV---------------FEDKGVKVVVDGKSM 68

Query: 108 LTLLGTEMDYVENKLSSEFVFNNPNIKG 135
             L GT++D+V+  L+  F F NPN+K 
Sbjct: 69  QFLDGTQLDFVKEGLNEGFKFTNPNVKD 96


>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 101

 Score = 55.1 bits (132), Expect = 2e-11
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 15/84 (17%)

Query: 48  GLKVGVQQRGCNGLSYTLNYAKDKEKMDEEVIQDVKYWALILTCFFHVSGVRIFIDRKAQ 107
            L++ V   GC+G  Y + +    E+ D                 F   GV++ ID  + 
Sbjct: 33  ILRIRVVPGGCSGFQYAMGFDDTVEEGD---------------HVFEYDGVKVVIDPFSM 77

Query: 108 LTLLGTEMDYVENKLSSEFVFNNP 131
             + G E+DYV + +   F   NP
Sbjct: 78  PYVNGAELDYVVDFMGGGFTIRNP 101


>d1rwra_ b.80.1.11 (A:) Filamentous hemagglutinin FhaB, secretion
           domain {Bordetella pertussis [TaxId: 520]}
          Length = 297

 Score = 25.9 bits (56), Expect = 2.0
 Identities = 5/31 (16%), Positives = 14/31 (45%)

Query: 22  SDDRTQIHGLLKINKIHCIIFISSQAGLKVG 52
               +++ G L++      + I++  G+ V 
Sbjct: 82  DTSPSRLAGTLEVYGKGADLIIANPNGISVN 112


>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG
          {Synechococcus sp. pcc 7942 [TaxId: 1140]}
          Length = 406

 Score = 24.7 bits (53), Expect = 5.2
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query: 66 NYAKDKEKMDEEVIQDVK 83
          NY ++ +K+D  + QD++
Sbjct: 30 NYQEEVQKLDAALKQDLQ 47


>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus
           subtilis [TaxId: 1423]}
          Length = 223

 Score = 24.1 bits (52), Expect = 7.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 102 IDRKAQLTLLGTEMDYVENKLSSEFVFNN 130
           I    +   LGT++D+ +     E  F+N
Sbjct: 70  IPIPKRFDFLGTDIDFGKRDTLVEVQFSN 98


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.422 

Gapped
Lambda     K      H
   0.267   0.0666    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,378
Number of extensions: 21376
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.8 bits)