BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10004
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|B Chain B, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|C Chain C, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|D Chain D, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
Length = 287
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 70 RVREWYINAAASPKDMVILLDNSGSMMGQRR--EIARHVINNLLDTLGNNDYVNVLQFTS 127
+++ + N KD+ IL++N+G +G R +IA I ++ DT NV +
Sbjct: 101 KIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDT-------NVTALIN 153
Query: 128 VCKEVVPCF 136
+ + V+P F
Sbjct: 154 ITQAVLPIF 162
>pdb|2CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
Length = 437
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 190 DCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACA 249
DC I + A++ Y+ ++ E + G DS L F+ ++G A + ++ +
Sbjct: 174 DCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLT 233
Query: 250 ----NKGYYV--HLSTL--AEVRDQILSYVPVM---ARPLVLQRNDHPIVW-----TPIY 293
++G V H S L + + D LS+ M A PL N +VW +
Sbjct: 234 IHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVG 293
Query: 294 ADVTDPKLSDWLW 306
DV+D KL D++W
Sbjct: 294 KDVSDEKLRDYIW 306
>pdb|4CTS|A Chain A, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|4CTS|B Chain B, Crystal Structure Analysis And Molecular Model Of A
Complex Of Citrate Synthase With Oxaloacetate And
S-Acetonyl- Coenzyme A
pdb|1CTS|A Chain A, Crystallographic Refinement And Atomic Models Of Two
Different Forms Of Citrate Synthase At 2.7 And 1.7
Angstroms Resolution
pdb|3ENJ|A Chain A, Structure Of Pig Heart Citrate Synthase At 1.78 A
Resolution
Length = 437
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 190 DCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACA 249
DC I + A++ Y+ ++ E + G DS L F+ ++G A + ++ +
Sbjct: 174 DCMDLIAKLPCVAAKIYRNLYREGSSIGAIDSKLDWSHNFTNMLGYTDAQFTELMRLYLT 233
Query: 250 ----NKGYYV--HLSTL--AEVRDQILSYVPVM---ARPLVLQRNDHPIVW-----TPIY 293
++G V H S L + + D LS+ M A PL N +VW +
Sbjct: 234 IHSDHEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLVWLTQLQKEVG 293
Query: 294 ADVTDPKLSDWLW 306
DV+D KL D++W
Sbjct: 294 KDVSDEKLRDYIW 306
>pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|B Chain B, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|C Chain C, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|D Chain D, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
Length = 484
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 21 YQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRT--DNMTDLYDCRVREWYINA 78
Y AD + W + G+ + A ++ D + FKP+ RT DN D R +++ +
Sbjct: 113 YTADGN--WDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRTNLDN-----DSRRFDFFSHV 165
Query: 79 AASPKDMVILLDNSGSMMGQR 99
+ + + +L N G+ G R
Sbjct: 166 PEATRTLTLLYSNEGTPAGYR 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,684,836
Number of Sequences: 62578
Number of extensions: 438301
Number of successful extensions: 1138
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1137
Number of HSP's gapped (non-prelim): 10
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)