Query psy10004
Match_columns 354
No_of_seqs 395 out of 1911
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 15:26:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fx5_A VON willebrand factor t 99.9 2.4E-24 8.3E-29 212.8 21.5 185 80-280 75-263 (464)
2 1ijb_A VON willebrand factor; 99.9 7.7E-23 2.6E-27 180.5 19.9 174 81-275 12-196 (202)
3 1q0p_A Complement factor B; VO 99.9 3.7E-23 1.3E-27 184.3 17.3 187 80-273 13-218 (223)
4 3ibs_A Conserved hypothetical 99.9 3.1E-22 1E-26 178.0 17.6 171 80-276 9-214 (218)
5 4hqo_A Sporozoite surface prot 99.9 2.2E-22 7.7E-27 185.1 17.1 184 81-279 17-211 (266)
6 4hqf_A Thrombospondin-related 99.9 4E-22 1.4E-26 184.8 17.5 183 81-278 20-213 (281)
7 3zqk_A VON willebrand factor; 99.9 7E-22 2.4E-26 173.9 17.1 172 80-276 19-195 (199)
8 1mf7_A Integrin alpha M; cell 99.9 1.6E-22 5.4E-27 176.9 11.8 178 81-275 4-190 (194)
9 1atz_A VON willebrand factor; 99.9 5.4E-21 1.8E-25 166.6 19.0 167 81-265 4-175 (189)
10 1n3y_A Integrin alpha-X; alpha 99.9 3.6E-22 1.2E-26 174.9 10.0 177 81-275 8-194 (198)
11 1shu_X Anthrax toxin receptor 99.9 1.3E-20 4.4E-25 162.6 18.8 174 81-274 5-181 (182)
12 2b2x_A Integrin alpha-1; compu 99.9 1.5E-21 5.2E-26 174.7 13.1 173 81-275 21-212 (223)
13 1pt6_A Integrin alpha-1; cell 99.9 1.8E-21 6.2E-26 172.9 12.9 173 81-275 6-197 (213)
14 1v7p_C Integrin alpha-2; snake 99.9 5.2E-21 1.8E-25 168.2 15.6 173 81-275 5-196 (200)
15 3n2n_F Anthrax toxin receptor 99.9 8.2E-21 2.8E-25 164.3 15.9 169 81-273 6-183 (185)
16 1mjn_A Integrin alpha-L; rossm 99.8 4.5E-22 1.5E-26 172.2 6.0 167 82-270 2-175 (179)
17 2odp_A Complement C2; C3/C5 co 99.8 2.5E-20 8.6E-25 186.4 18.1 187 80-272 7-211 (509)
18 3hrz_D Complement factor B; se 99.8 3.9E-20 1.3E-24 192.9 18.4 189 80-275 241-448 (741)
19 1rrk_A Complement factor B; BB 99.8 4.7E-20 1.6E-24 183.7 17.4 187 82-275 1-206 (497)
20 2xgg_A Microneme protein 2; A/ 99.8 4.4E-20 1.5E-24 159.4 14.9 149 81-245 16-170 (178)
21 2x31_A Magnesium-chelatase 60 99.8 5.6E-22 1.9E-26 172.6 -1.7 161 81-258 4-172 (189)
22 3k6s_A Integrin alpha-X; cell 99.7 5.1E-18 1.7E-22 182.8 6.0 178 80-274 128-314 (1095)
23 2x5n_A SPRPN10, 26S proteasome 99.7 7.6E-16 2.6E-20 134.6 17.3 159 83-261 3-174 (192)
24 4b4t_W RPN10, 26S proteasome r 99.7 4.7E-16 1.6E-20 141.8 14.8 172 84-280 5-192 (268)
25 2ww8_A RRGA, cell WALL surface 99.6 4.9E-14 1.7E-18 148.3 18.2 120 79-204 221-391 (893)
26 1jey_B KU80; double-strand DNA 99.3 1.1E-11 3.9E-16 125.2 14.2 140 83-236 8-170 (565)
27 1yvr_A RO autoantigen, 60-kDa 99.3 2.1E-11 7.2E-16 122.6 12.1 130 80-236 366-504 (538)
28 3rag_A Uncharacterized protein 99.2 7.5E-11 2.6E-15 105.1 8.8 93 80-181 132-228 (242)
29 2nvo_A RO sixty-related protei 99.1 5.8E-10 2E-14 111.8 11.4 130 80-236 360-500 (535)
30 1jey_A KU70; double-strand DNA 99.0 2.5E-09 8.6E-14 108.8 13.2 141 82-236 34-208 (609)
31 2iue_A Pactolus I-domain; memb 98.4 5.4E-07 1.8E-11 79.0 7.7 110 81-205 2-118 (212)
32 2nut_A Protein transport prote 98.4 1.2E-05 4E-10 83.8 17.7 180 80-272 130-395 (769)
33 3fcs_B Integrin beta-3; beta p 98.3 2.8E-06 9.7E-11 87.0 11.9 187 77-280 106-357 (690)
34 3rag_A Uncharacterized protein 98.3 3.5E-06 1.2E-10 75.0 10.0 67 191-266 9-82 (242)
35 1pcx_A Protein transport prote 98.0 9.4E-05 3.2E-09 77.4 16.1 165 80-259 185-412 (810)
36 1m2o_A SEC23, protein transpor 98.0 0.00018 6.3E-09 74.8 17.9 183 80-272 119-389 (768)
37 3t3p_B Integrin beta-3; integr 98.0 1E-05 3.5E-10 78.7 7.4 188 76-280 105-357 (472)
38 3k6s_B Integrin beta-2; cell r 97.8 9.9E-06 3.4E-10 82.8 4.2 121 77-204 99-246 (687)
39 3v4v_B Integrin beta-7; cell a 97.8 3.3E-05 1.1E-09 75.5 6.9 187 75-280 125-376 (503)
40 3vi3_B Integrin beta-1; beta p 97.7 5.2E-05 1.8E-09 73.2 7.3 186 77-280 117-364 (454)
41 1m2v_B SEC24, protein transpor 97.7 0.00052 1.8E-08 72.5 14.5 165 80-259 301-528 (926)
42 3eh1_A Protein transport prote 97.7 0.0015 5.2E-08 67.6 17.7 163 79-260 157-377 (751)
43 3efo_B SEC24 related gene fami 97.6 0.0039 1.3E-07 64.9 19.4 165 79-260 174-402 (770)
44 3eh2_A Protein transport prote 97.5 0.0033 1.1E-07 65.4 17.9 165 79-260 170-398 (766)
45 3by9_A Sensor protein; histidi 28.5 66 0.0023 27.1 4.9 65 12-90 58-122 (260)
46 3lic_A Sensor protein; PDC fol 25.7 46 0.0016 28.4 3.4 19 331-351 144-162 (274)
47 3e4o_A C4-dicarboxylate transp 22.9 47 0.0016 29.9 2.9 66 11-90 98-163 (305)
48 4dah_A Sporulation kinase D; a 20.4 63 0.0022 26.6 3.1 52 11-79 54-105 (217)
No 1
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.92 E-value=2.4e-24 Score=212.78 Aligned_cols=185 Identities=19% Similarity=0.191 Sum_probs=159.3
Q ss_pred CCCceEEEEEeCCCCCC--cchHHHHHHHHHHHHHHcCCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 80 ASPKDMVILLDNSGSMM--GQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~--g~~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
..|.+++||||+||||. +.+++.+|+++..+++.|.++|+|+|+.|++.+..++|+ ...+.+.+..++..++.+|+.
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p~-t~~l~~~~~~~~~~l~~~I~~ 153 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT-GGQLLRADYQSRAAAKEAVGR 153 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEESS-SSSCEECSHHHHHHHHHHHHT
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEecC-CcccccCCHHHHHHHHHHHHc
Confidence 35799999999999999 999999999999999999999999999999999887763 224677788999999999999
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCch--HHHHHHhhhcccCCCCCCCeEEEEEEeCC
Q psy10004 158 IGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENY--KEVFEEFNWRGQNDSTLWPVRVFSYLVGK 235 (354)
Q Consensus 158 l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~--~~i~~~~~~~~~~~~~~~~v~IftigiG~ 235 (354)
+ .+.|+|++..||..|+++|... ++..+.|||||||.+++. ..+...++. . ..+++||+||+|.
T Consensus 154 L-~~~GgT~l~~aL~~A~~~l~~~-------~~~~~~IILLTDG~~~~~~~~~l~~~~~a-~-----~~~i~i~tiGiG~ 219 (464)
T 4fx5_A 154 L-HANGGTAMGRWLAQAGRIFDTA-------PSAIKHAILLTDGKDESETPADLARAIQS-S-----IGNFTADCRGIGE 219 (464)
T ss_dssp C-CCCSCCCHHHHHHHHHHHHTTC-------TTSEEEEEEEESSCCTTSCHHHHHHHHHH-H-----TTTCEEEEEEESS
T ss_pred C-CCCCCCcHHHHHHHHHHHHhcC-------CCCCCEEEEEcCCCCCCCChHHHHHHHHH-h-----cCCCeEEEEEeCC
Confidence 9 9999999999999999999752 245689999999998742 333333321 1 2479999999998
Q ss_pred CCCCHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHhccchhc
Q psy10004 236 EVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMARPLVL 280 (354)
Q Consensus 236 ~~~~~~~L~~iA~~~~G~~~~i~~~~~~~~~l~~~~~~l~~pl~~ 280 (354)
+. +...|+.||+.++|.|+++.+.+++...+.+++..+..+.+.
T Consensus 220 ~~-d~~~L~~IA~~tgG~~~~v~d~~~L~~~f~~i~~~~~s~~~~ 263 (464)
T 4fx5_A 220 DW-EPKELRKIADALLGTVGIIRDPATLAEDFREMTAKSMGKEVA 263 (464)
T ss_dssp SS-CHHHHHHHHHHTTCCEEEESSGGGHHHHHHHHHHHHHTCCEE
T ss_pred cc-CHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhhchhee
Confidence 87 899999999999999999999999999999999999888655
No 2
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.91 E-value=7.7e-23 Score=180.46 Aligned_cols=174 Identities=13% Similarity=0.162 Sum_probs=136.0
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
.+.|++||||+||||.+.+++.+|+++..+++.|. ++++|+|+.|++.++..++ +. ...+...+..+|+.
T Consensus 12 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~~~-----l~--~~~~~~~~~~~i~~ 84 (202)
T 1ijb_A 12 RLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIG-----LK--DRKRPSELRRIASQ 84 (202)
T ss_dssp SCEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEEEC-----TT--CCCCHHHHHHHHHT
T ss_pred CcccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEEEe-----cC--CCCCHHHHHHHHHh
Confidence 47999999999999999999999999999999987 5789999999999876544 11 12356788899999
Q ss_pred hcCCCCC--CcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCch-----HHHHHHhhhcccCCCCCCCeEEEE
Q psy10004 158 IGDANNI--ANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENY-----KEVFEEFNWRGQNDSTLWPVRVFS 230 (354)
Q Consensus 158 l~~~~G~--T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~-----~~i~~~~~~~~~~~~~~~~v~Ift 230 (354)
+ ...|+ |++..||..|.+.+... . ...+..++|||||||.+++. .+..+.++ ..+|+||+
T Consensus 85 l-~~~gg~~T~~~~aL~~a~~~~~~~-~---~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~--------~~gi~i~~ 151 (202)
T 1ijb_A 85 V-KYAGSQVASTSEVLKYTLFQIFSK-I---DRPEASRIALLLMASQEPQRMSRNFVRYVQGLK--------KKKVIVIP 151 (202)
T ss_dssp C-CCCCBSCCCHHHHHHHHHHHTSSS-C---SCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHH--------HTTEEEEE
T ss_pred C-cCCCCCcCcHHHHHHHHHHHHhcc-C---CCCCCCeEEEEEccCCCCccchHHHHHHHHHHH--------HCCCEEEE
Confidence 9 65443 99999999998654221 1 12456799999999998742 23333332 24899999
Q ss_pred EEeCCCCCCHHHHHHHHhc-CCcEEEEeCChhHHHHHHHHHHHHhc
Q psy10004 231 YLVGKEVADYRDVKWMACA-NKGYYVHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 231 igiG~~~~~~~~L~~iA~~-~~G~~~~i~~~~~~~~~l~~~~~~l~ 275 (354)
||+|.+. +...|+.||+. ++|+++.+.+.+++...+.++.+.++
T Consensus 152 igvG~~~-~~~~L~~iA~~~~~~~~~~~~~~~~L~~~~~~i~~~iC 196 (202)
T 1ijb_A 152 VGIGPHA-NLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLC 196 (202)
T ss_dssp EEESTTS-CHHHHHHHHHHCTTCCCEEESSGGGHHHHHHHHHHHHH
T ss_pred EecCCcC-CHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHhh
Confidence 9999876 89999999985 46788889999998877777766654
No 3
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.90 E-value=3.7e-23 Score=184.30 Aligned_cols=187 Identities=14% Similarity=0.189 Sum_probs=132.3
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHh
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVE 156 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~ 156 (354)
..|.||+||||+||||.+..++.+|+++..+++.|. ++++|+|+.|++.+...++ +......+...+..+|+
T Consensus 13 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~~-----~~~~~~~~~~~~~~~i~ 87 (223)
T 1q0p_A 13 SGSMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLN 87 (223)
T ss_dssp --CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHH
T ss_pred CCceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceeec-----cccCCCCCHHHHHHHHH
Confidence 368999999999999999999999999999987764 5789999999999877654 22223456788899999
Q ss_pred hhcC-----CCCCCcHHHHHHHHHHHHHhccccCC-CCCCCcceEEEeccCCCC---chHHHHHHhhhcc-----cCCCC
Q psy10004 157 MIGD-----ANNIANFTVALTRAFNILENARNDKK-TGADCNQAIMVVTDGASE---NYKEVFEEFNWRG-----QNDST 222 (354)
Q Consensus 157 ~l~~-----~~G~T~~~~aL~~A~~~l~~~~~~~~-~~~~~~~~IillTDG~~~---~~~~i~~~~~~~~-----~~~~~ 222 (354)
.+ . ++|+|++..||..|.+.|.......+ ......++|||+|||.++ ++....+.++... .....
T Consensus 88 ~l-~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
T 1q0p_A 88 EI-NYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPR 166 (223)
T ss_dssp TC-CTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSCBTTBCC
T ss_pred hc-ccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHHHHHHhhhhhhhhcc
Confidence 99 5 46999999999999999874321110 012567899999999988 4555544442100 00113
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHhcCCc--EEEEeCChhHHHHHHHHHHHH
Q psy10004 223 LWPVRVFSYLVGKEVADYRDVKWMACANKG--YYVHLSTLAEVRDQILSYVPV 273 (354)
Q Consensus 223 ~~~v~IftigiG~~~~~~~~L~~iA~~~~G--~~~~i~~~~~~~~~l~~~~~~ 273 (354)
..+|+||+||+|.+. +...|+.||+.++| +|+.+.+.+++...+.++++.
T Consensus 167 ~~~i~i~~igvG~~~-~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~~i~~~ 218 (223)
T 1q0p_A 167 EDYLDVYVFGVGPLV-NQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDE 218 (223)
T ss_dssp GGGEEEEEEECSSCC-CHHHHHHHSCCCTTCCCEEETTC--------------
T ss_pred cCCcEEEEEEecCcC-CHHHHHHHhcCCCCCceEEEcCCHHHHHHHHHHHhcc
Confidence 468999999999876 89999999999999 899999988887766666543
No 4
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=3.1e-22 Score=178.00 Aligned_cols=171 Identities=25% Similarity=0.276 Sum_probs=137.0
Q ss_pred CCCceEEEEEeCCCCCCcc-----hHHHHHHHHHHHHHHcCCCCeEEEEEeecccccccccccccccccChhhHHHHHHH
Q psy10004 80 ASPKDMVILLDNSGSMMGQ-----RREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMG 154 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~-----~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~ 154 (354)
..+.+++||||+||||.+. +++.+|.++..+++.+. +++|+|+.|++.+..++|. ..+...+..+
T Consensus 9 ~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~~~~---------~~~~~~~~~~ 78 (218)
T 3ibs_A 9 RKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQLPI---------TSDYISAKMF 78 (218)
T ss_dssp -CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEEEEE---------ESCHHHHHHH
T ss_pred cCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEeCCC---------CCCHHHHHHH
Confidence 4789999999999999975 89999999999999985 8999999999998775541 1245566777
Q ss_pred HhhhcCC----CCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCch--HHHHHHhhhcccCCCCCCCeEE
Q psy10004 155 VEMIGDA----NNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENY--KEVFEEFNWRGQNDSTLWPVRV 228 (354)
Q Consensus 155 i~~l~~~----~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~--~~i~~~~~~~~~~~~~~~~v~I 228 (354)
++.+ .+ .|+|++..||..|.+.+... +...++|||||||.++.. .+..+.++ ..+++|
T Consensus 79 l~~l-~~~~~~~g~T~l~~al~~a~~~l~~~-------~~~~~~ivllTDG~~~~~~~~~~~~~~~--------~~~i~v 142 (218)
T 3ibs_A 79 LESI-SPSLISKQGTAIGEAINLATRSFTPQ-------EGVGRAIIVITDGENHEGGAVEAAKAAA--------EKGIQV 142 (218)
T ss_dssp HHTC-CGGGCCSCSCCHHHHHHHHHTTSCSC-------SSCCEEEEEEECCTTCCSCHHHHHHHHH--------TTTEEE
T ss_pred HHhc-CcccCCCCCCcHHHHHHHHHHHHhhC-------CCCCcEEEEEcCCCCCCCcHHHHHHHHH--------hcCCEE
Confidence 7777 44 79999999999999877542 245689999999998754 45555443 258999
Q ss_pred EEEEeCCC------------------------CCCHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHhcc
Q psy10004 229 FSYLVGKE------------------------VADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMAR 276 (354)
Q Consensus 229 ftigiG~~------------------------~~~~~~L~~iA~~~~G~~~~i~~~~~~~~~l~~~~~~l~~ 276 (354)
|+||+|.. ..+...|+.||..++|.|+++.+..+....+.+.+..+.+
T Consensus 143 ~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~~i~~l~~ 214 (218)
T 3ibs_A 143 SVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQEISKMAK 214 (218)
T ss_dssp EEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHHHHHHhhc
Confidence 99999973 2378999999999999999999977777777777777654
No 5
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.89 E-value=2.2e-22 Score=185.13 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=144.2
Q ss_pred CCceEEEEEeCCCCCCcchH-HHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHh
Q psy10004 81 SPKDMVILLDNSGSMMGQRR-EIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVE 156 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~-~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~ 156 (354)
.+.||+||||.||||.+..+ +.+|.++..+++.|. ++++|+|+.|++.+...++ +......++..+..+|+
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~~~-----l~~~~~~~~~~~~~~i~ 91 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTELIR-----LGSGQSIDKRQALSKVT 91 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEEEC-----TTSHHHHCHHHHHHHHH
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceEEe-----cCCCCccCHHHHHHHHH
Confidence 68999999999999999888 589999999999997 7899999999999877654 22222235778888888
Q ss_pred hhc---CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchHHHHHHhhhcccCCCCCCCeEEEEEEe
Q psy10004 157 MIG---DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLV 233 (354)
Q Consensus 157 ~l~---~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~~i~~~~~~~~~~~~~~~~v~Iftigi 233 (354)
.+. .++|+|++..||..|.++|.... . ..+..++|||||||.++++..+.+.++... ..+|+||+|||
T Consensus 92 ~l~~~~~~~G~T~~~~AL~~a~~~l~~~~-~---r~~~~~~iIllTDG~~~d~~~~~~~a~~l~-----~~gi~i~~iGi 162 (266)
T 4hqo_A 92 ELRKTYTPYGTTSMTAALDEVQKHLNDRV-N---REKAIQLVILMTDGVPNSKYRALEVANKLK-----QRNVRLAVIGI 162 (266)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHTTC-S---CTTSEEEEEEEECSCCSCHHHHHHHHHHHH-----HTTCEEEEEEC
T ss_pred HhhhccCCCCCCCHHHHHHHHHHHHhhcc-c---cCCCCeEEEEEccCCCCCchHHHHHHHHHH-----HCCCEEEEEec
Confidence 883 57899999999999998887531 1 245679999999999997655544433111 24799999999
Q ss_pred CCCCCCHHHHHHHHhcC--C--cEEEEeCChhHHHHHHHHHHHHhccchh
Q psy10004 234 GKEVADYRDVKWMACAN--K--GYYVHLSTLAEVRDQILSYVPVMARPLV 279 (354)
Q Consensus 234 G~~~~~~~~L~~iA~~~--~--G~~~~i~~~~~~~~~l~~~~~~l~~pl~ 279 (354)
|.+. +.++|+.||... + +.++.+.+.+++.+.+..+++.++..+.
T Consensus 163 G~~~-~~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~i~~~l~~~iC~~~~ 211 (266)
T 4hqo_A 163 GQGI-NHQFNRLIAGCRPREPNCKFYSYADWNEAVALIKPFIAKVCTEVE 211 (266)
T ss_dssp SSSC-CHHHHHHHHTCCTTCSSCTTEECSCHHHHHHHHHHHHCCCEEEEE
T ss_pred Cccc-CHHHHHHhhCCCCCCCCCCeEEecCHHHHHHHHHHHHhhhccccc
Confidence 9977 889999999775 2 3677789988888777777777765543
No 6
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=99.88 E-value=4e-22 Score=184.79 Aligned_cols=183 Identities=16% Similarity=0.214 Sum_probs=143.5
Q ss_pred CCceEEEEEeCCCCCCcchH-HHHHHHHHHHHHHcCC---CCeEEEEEeecccccccccccccccccChhhHHHHHHHHh
Q psy10004 81 SPKDMVILLDNSGSMMGQRR-EIARHVINNLLDTLGN---NDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVE 156 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~-~~ak~a~~~ll~~L~~---~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~ 156 (354)
.+.||+||||.||||.+..+ +.+|.++..+++.|.. +++|+|+.|++.+...++ +......++..+..+|+
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~-----l~~~~~~~~~~l~~~i~ 94 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIR-----LHSDASKNKEKALIIIK 94 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEE-----ECSSCSSCHHHHHHHHH
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEE-----ccccCccCHHHHHHHHH
Confidence 68999999999999998777 8999999999999985 789999999999877654 22223335677778888
Q ss_pred hhc---CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchHHHHHHhhhcccCCCCCCCeEEEEEEe
Q psy10004 157 MIG---DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLV 233 (354)
Q Consensus 157 ~l~---~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~~i~~~~~~~~~~~~~~~~v~Iftigi 233 (354)
.+. .++|+|++..||..|.+.|.... ...+..++|||||||.++++..+.+.++... ..+|+||+||+
T Consensus 95 ~l~~~~~~~G~T~~~~aL~~a~~~l~~~~----~r~~~~~~iillTDG~~~d~~~~~~~~~~l~-----~~gv~i~~igi 165 (281)
T 4hqf_A 95 SLLSTNLPYGKTSLTDALLQVRKHLNDRI----NRENANQLVVILTDGIPDSIQDSLKESRKLS-----DRGVKIAVFGI 165 (281)
T ss_dssp HHHHTTGGGCSCCHHHHHHHHHHHHHTSC----CCTTCEEEEEEEESSCCSCHHHHHHHHHHHH-----HTTCEEEEEEE
T ss_pred HHhhccCCCCCccHHHHHHHHHHHHHhcc----CCCCCCEEEEEEecCCCCCcHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 772 35899999999999998887532 1235679999999999997655544432111 25799999999
Q ss_pred CCCCCCHHHHHHHHhcC--Cc--EEEEeCChhHHHHHHHHHHHHhccch
Q psy10004 234 GKEVADYRDVKWMACAN--KG--YYVHLSTLAEVRDQILSYVPVMARPL 278 (354)
Q Consensus 234 G~~~~~~~~L~~iA~~~--~G--~~~~i~~~~~~~~~l~~~~~~l~~pl 278 (354)
|.+. +.++|+.||... +| .++.+.+.+++...+..+...+....
T Consensus 166 G~~~-~~~~L~~iA~~~~~~g~~~~~~~~~~~~L~~~~~~l~~~iC~~v 213 (281)
T 4hqf_A 166 GQGI-NVAFNRFLVGCHPSDGKCNLYADSAWENVKNVIGPFMKAVCVEV 213 (281)
T ss_dssp SSSC-CHHHHHHHTTSCSSSSCCTTEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred CCcc-CHHHHHhhhCCCCCCCCCceEEecchhhhhcccCCcccccCCCc
Confidence 9986 899999999774 44 77888999998887777777776553
No 7
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=99.88 E-value=7e-22 Score=173.91 Aligned_cols=172 Identities=11% Similarity=0.137 Sum_probs=136.0
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHc---CCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHh
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVE 156 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L---~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~ 156 (354)
..|.|++||||.||||.+.+++.+|+++..+++.| .++++|+|+.|++.++..++ +. ...++..+.++|+
T Consensus 19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~~-l~------~~~~~~~~~~~i~ 91 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYP-FS------EAQSKGDILQRLR 91 (199)
T ss_dssp CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEEC-TT------SCCCHHHHHHHHH
T ss_pred CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEEe-cC------CcCCHHHHHHHHH
Confidence 36899999999999999999999999999999999 47899999999999887654 11 2346778899999
Q ss_pred hhcCCC-C-CCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchHHHHHHhhhcccCCCCCCCeEEEEEEeC
Q psy10004 157 MIGDAN-N-IANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVG 234 (354)
Q Consensus 157 ~l~~~~-G-~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~~i~~~~~~~~~~~~~~~~v~IftigiG 234 (354)
.+ ... | +|++..||..|.+.+...... ...+..++|||||||.+.+. + +. ...+|+||+||+|
T Consensus 92 ~l-~~~gg~~T~~~~aL~~a~~~l~~~~~g--~r~~~~~~iillTDG~~~d~------v--~~----~~~~v~v~~iGiG 156 (199)
T 3zqk_A 92 EI-RYQGGNRTNTGLALRYLSDHSFLVSQG--DREQAPNLVYMVTGNPASDE------I--KR----LPGDIQVVPIGVG 156 (199)
T ss_dssp HC-CCCCCSCCCHHHHHHHCCCCCTCGGGT--CCTTSCEEEEEEECSCCSSC------C--CC----CCTTEEEEEEEES
T ss_pred hC-cCCCCCcChHHHHHHHHHHHhhCcccC--CCCCCCeEEEEEeCCCCchH------H--HH----HhCCCEEEEEEcC
Confidence 99 544 4 499999999999854321111 22456789999999987643 1 11 2358999999999
Q ss_pred CCCCCHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHhcc
Q psy10004 235 KEVADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVMAR 276 (354)
Q Consensus 235 ~~~~~~~~L~~iA~~~~G~~~~i~~~~~~~~~l~~~~~~l~~ 276 (354)
.+. +..+|+.||+ .++.| ++.+.+++...+.+++..++.
T Consensus 157 ~~~-~~~~L~~iA~-~~~~~-~~~~~~~L~~~~~~l~~~~c~ 195 (199)
T 3zqk_A 157 PNA-NVQELERIGW-PNAPI-LIQDFETLPREAPDLVLQRCC 195 (199)
T ss_dssp TTC-CHHHHHHHHT-TSCCE-EESCTTTHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHhC-CCceE-EeCCHHHHHHHHHHHHHhhcc
Confidence 876 8999999998 44444 889999999888888887763
No 8
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=99.88 E-value=1.6e-22 Score=176.94 Aligned_cols=178 Identities=13% Similarity=0.196 Sum_probs=134.7
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC-CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhhhc
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG-NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIG 159 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~-~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l~ 159 (354)
.|.||+||||+||||.+.+++.+|+++..+++.|. ++++|+|+.|++.++..++. . ...+...+..+|+.+.
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~~~l-~------~~~~~~~~~~~i~~l~ 76 (194)
T 1mf7_A 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTF-K------EFQNNPNPRSLVKPIT 76 (194)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEEECH-H------HHHHSCCHHHHHTTCC
T ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEEEec-C------CcCCHHHHHHHHHhCc
Confidence 57899999999999999999999999999999996 57899999999998765441 1 1123456788899983
Q ss_pred CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC-ch---HHHHHHhhhcccCCCCCCCeEEEEEEeCC
Q psy10004 160 DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE-NY---KEVFEEFNWRGQNDSTLWPVRVFSYLVGK 235 (354)
Q Consensus 160 ~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~-~~---~~i~~~~~~~~~~~~~~~~v~IftigiG~ 235 (354)
..+|+|++..||..|.+.+...... ..++..++|||+|||.++ ++ .+..+.++ ..+|+||+||+|.
T Consensus 77 ~~~g~T~~~~aL~~a~~~l~~~~~~--~r~~~~~~iillTDG~~~~d~~~~~~~~~~~~--------~~gi~v~~igvG~ 146 (194)
T 1mf7_A 77 QLLGRTHTATGIRKVVRELFNITNG--ARKNAFKILVVITDGEKFGDPLGYEDVIPEAD--------REGVIRYVIGVGD 146 (194)
T ss_dssp CCCSCBCHHHHHHHHHHTTTSGGGT--CCTTSEEEEEEEESSCCBSCSSCGGGTHHHHH--------HTTEEEEEEEESG
T ss_pred CCCCCchHHHHHHHHHHHhcCcccC--CCCCCCeEEEEEcCCCCCCCchhhHHHHHHHH--------HCCCEEEEEEecc
Confidence 3589999999999999755322111 124567899999999987 43 34444442 2479999999998
Q ss_pred CCC---CHHHHHHHHhcC-CcEEEEeCChhHHHHHHHHHHHHhc
Q psy10004 236 EVA---DYRDVKWMACAN-KGYYVHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 236 ~~~---~~~~L~~iA~~~-~G~~~~i~~~~~~~~~l~~~~~~l~ 275 (354)
+.. +...|+.||..+ +|+++.+.+.+++...+.++...++
T Consensus 147 ~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l~~~~~~i~~~ic 190 (194)
T 1mf7_A 147 AFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIF 190 (194)
T ss_dssp GGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred cccccccHHHHHHHhCCCCcccEEEeCCHHHHHHHHHHHHHHHh
Confidence 652 278999999986 4788889988877665555555543
No 9
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.87 E-value=5.4e-21 Score=166.56 Aligned_cols=167 Identities=18% Similarity=0.234 Sum_probs=130.2
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
.|.|++||||.||||.+.+++.+|+++..+++.+. .+++|+|+.|++.+...++. . ...+...+..+++.
T Consensus 4 ~~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~~~l-~------~~~~~~~~~~~i~~ 76 (189)
T 1atz_A 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPW-N------VVPEKAHLLSLVDV 76 (189)
T ss_dssp CCEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECT-T------CCCCHHHHHHHHHT
T ss_pred CceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEEEec-C------CCCCHHHHHHHHHh
Confidence 58899999999999999999999999999999986 34799999999998775541 1 13467888899999
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCc-hHHHHHHhhhcccCCCCCCCeEEEEEEeCCC
Q psy10004 158 IGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASEN-YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKE 236 (354)
Q Consensus 158 l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~-~~~i~~~~~~~~~~~~~~~~v~IftigiG~~ 236 (354)
+...+|+|++..||..|.+.+...... ..++..+++|+||||.+++ .....+.++ ..+++||+||+|.+
T Consensus 77 l~~~~g~T~~~~aL~~a~~~l~~~~~g--~r~~~~~~vivltdg~~~~~~~~~~~~~~--------~~gi~v~~igvG~~ 146 (189)
T 1atz_A 77 MQREGGPSQIGDALGFAVRYLTSEMHG--ARPGASKAVVILVTDVSVDSVDAAADAAR--------SNRVTVFPIGIGDR 146 (189)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCCTT--CCTTSEEEEEEEECSCCSSCCHHHHHHHH--------HTTEEEEEEEESSS
T ss_pred CcCCCCcchHHHHHHHHHHHHhccccC--CCCCCCcEEEEEeCCCCCchHHHHHHHHH--------HCCCEEEEEEcCCc
Confidence 933578999999999999988653211 1234567788888887753 455555543 24799999999987
Q ss_pred CCCHHHHHHHHhcCCc-EEEEeCChhHHHH
Q psy10004 237 VADYRDVKWMACANKG-YYVHLSTLAEVRD 265 (354)
Q Consensus 237 ~~~~~~L~~iA~~~~G-~~~~i~~~~~~~~ 265 (354)
. +...|+.||..++| +++.+.+.+++..
T Consensus 147 ~-~~~~L~~iA~~~~~~~~~~~~~~~~~~~ 175 (189)
T 1atz_A 147 Y-DAAQLRILAGPAGDSNVVKLQRIEDLPT 175 (189)
T ss_dssp S-CHHHHHHHTGGGGGGGCEEESSTTHHHH
T ss_pred C-CHHHHHHHHCCCcccCEEEecChhhHHH
Confidence 6 89999999999875 5667777766544
No 10
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.87 E-value=3.6e-22 Score=174.91 Aligned_cols=177 Identities=12% Similarity=0.201 Sum_probs=135.0
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHc-CCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhhhc
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTL-GNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIG 159 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L-~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l~ 159 (354)
.+.|++||||.||||.+..+..++.++..+++.| .++++|+|+.|++.+...++. . ...++..+..+|+.+.
T Consensus 8 ~~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~~~-~------~~~~~~~~~~~i~~l~ 80 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTF-E------EFRRSSNPLSLLASVH 80 (198)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEECH-H------HHHHCSSGGGGGTTCC
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEEec-C------ccCCHHHHHHHHhcCc
Confidence 6799999999999999988999999999999999 699999999999998765441 1 1123345666777773
Q ss_pred CCCCCCcHHHHHHHHHHH-HHhccccCCCCCCCcceEEEeccCCCC-ch---HHHHHHhhhcccCCCCCCCeEEEEEEeC
Q psy10004 160 DANNIANFTVALTRAFNI-LENARNDKKTGADCNQAIMVVTDGASE-NY---KEVFEEFNWRGQNDSTLWPVRVFSYLVG 234 (354)
Q Consensus 160 ~~~G~T~~~~aL~~A~~~-l~~~~~~~~~~~~~~~~IillTDG~~~-~~---~~i~~~~~~~~~~~~~~~~v~IftigiG 234 (354)
.++|+|++..||..|.+. +...... ..+..++|||+|||.++ +. .++.+.++ ..+++||+||+|
T Consensus 81 ~~~g~T~~~~al~~a~~~l~~~~~~~---r~~~~~~iillTDG~~~~~~~~~~~~~~~~~--------~~gi~i~~igvG 149 (198)
T 1n3y_A 81 QLQGFTYTATAIQNVVHRLFHASYGA---RRDAAKILIVITDGKKEGDSLDYKDVIPMAD--------AAGIIRYAIGVG 149 (198)
T ss_dssp CCCSCBCHHHHHHHHHTTTTSGGGTC---CTTSEEEEEEEESSCCBSCSSCHHHHHHHHH--------HTTCEEEEEEES
T ss_pred CCCCCchHHHHHHHHHHHHhCcccCC---CCCCceEEEEECCCCCCCCcccHHHHHHHHH--------HCCCEEEEEEcc
Confidence 478999999999999954 4432211 24567899999999987 32 44555443 247999999999
Q ss_pred CCCC---CHHHHHHHHhcCCcEE-EEeCChhHHHHHHHHHHHHhc
Q psy10004 235 KEVA---DYRDVKWMACANKGYY-VHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 235 ~~~~---~~~~L~~iA~~~~G~~-~~i~~~~~~~~~l~~~~~~l~ 275 (354)
.... +...|+.||..++|.| +.+.+.+++...+.++.+.++
T Consensus 150 ~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~~~~~i~~~ic 194 (198)
T 1n3y_A 150 LAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKIF 194 (198)
T ss_dssp GGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGGGHHHHHHHHH
T ss_pred ccccccccHHHHHHHHcCCCcccEEEeCCHHHHHHHHHHHHhhee
Confidence 8641 5799999999999865 778888887666666665553
No 11
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.86 E-value=1.3e-20 Score=162.62 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=123.5
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHH-cCCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhhhc
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDT-LGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIG 159 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~-L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l~ 159 (354)
.|.||+||||.||||.+..+. .+.+++.++.. +.++++|+|+.|++.+....+. ..+......+...+..+
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~-~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~------~~~~~~~~~~l~~l~~~- 76 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIE-IYNFVQQLAERFVSPEMRLSFIVFSSQATIILPL------TGDRGKISKGLEDLKRV- 76 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHH-HHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEE------ECCHHHHHHHHHHHHTC-
T ss_pred CceeEEEEEECCCCcccCHHH-HHHHHHHHHHHhcCCCceEEEEEeCCCceEEECC------CCCHHHHHHHHHhcccC-
Confidence 589999999999999986553 34444555444 4589999999999998776542 12333334444444444
Q ss_pred CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchH--HHHHHhhhcccCCCCCCCeEEEEEEeCCCC
Q psy10004 160 DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYK--EVFEEFNWRGQNDSTLWPVRVFSYLVGKEV 237 (354)
Q Consensus 160 ~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~--~i~~~~~~~~~~~~~~~~v~IftigiG~~~ 237 (354)
.+.|+|++..||..|.+.+..... ....++|||+|||.+++.. ......+.. ...+++||+||+|.
T Consensus 77 ~~~g~T~~~~al~~a~~~l~~~~~-----~~~~~~iiliTDG~~~~~~~~~~~~~~~~~-----~~~~i~i~~igvg~-- 144 (182)
T 1shu_X 77 SPVGETYIHEGLKLANEQIQKAGG-----LKTSSIIIALTDGKLDGLVPSYAEKEAKIS-----RSLGASVYCVGVLD-- 144 (182)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHTG-----GGSCEEEEEEECCCCCTTHHHHHHHHHHHH-----HHTTCEEEEEECSS--
T ss_pred CCCCCchHHHHHHHHHHHHHhccC-----CCCCeEEEEECCCCcCCCCchhHHHHHHHH-----HhCCCEEEEEeCCc--
Confidence 589999999999999999976421 3456899999999987543 112111100 12479999999994
Q ss_pred CCHHHHHHHHhcCCcEEEEeCChhHHHHHHHHHHHHh
Q psy10004 238 ADYRDVKWMACANKGYYVHLSTLAEVRDQILSYVPVM 274 (354)
Q Consensus 238 ~~~~~L~~iA~~~~G~~~~i~~~~~~~~~l~~~~~~l 274 (354)
.+...|+.||..++|.|....+.+++...+.++.+.+
T Consensus 145 ~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~~i~~~i 181 (182)
T 1shu_X 145 FEQAQLERIADSKEQVFPVKGGFQALKGIINSILAQS 181 (182)
T ss_dssp CCHHHHHHHSSSGGGEEESSSTTHHHHHHHHHHHHTB
T ss_pred CCHHHHHHHhCCCCceEEccCCHHHHHHHHHHHHhcc
Confidence 3789999999999888877667788777666665543
No 12
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.86 E-value=1.5e-21 Score=174.65 Aligned_cols=173 Identities=17% Similarity=0.240 Sum_probs=132.2
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
.+.|++||||.||||. .++.+|.++..+++.|. ++++|+|+.|++.+...++. ....++..+..+|+.
T Consensus 21 ~~~div~vlD~SgSM~--~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~~~l-------~~~~~~~~~~~~i~~ 91 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIY--PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL-------NKYSSTEEVLVAANK 91 (223)
T ss_dssp -CEEEEEEEECSTTCC--CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEEECT-------TTCCSHHHHHHHHTT
T ss_pred CcceEEEEEECCCChh--hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEEEec-------CCCCCHHHHHHHHHh
Confidence 5799999999999998 48999999999999885 78999999999998776542 123456778889998
Q ss_pred hcCCCC--CCcHHHHHHHHHHHH-HhccccCCCCCCCcceEEEeccCCCCch---HHHHHHhhhcccCCCCCCCeEEEEE
Q psy10004 158 IGDANN--IANFTVALTRAFNIL-ENARNDKKTGADCNQAIMVVTDGASENY---KEVFEEFNWRGQNDSTLWPVRVFSY 231 (354)
Q Consensus 158 l~~~~G--~T~~~~aL~~A~~~l-~~~~~~~~~~~~~~~~IillTDG~~~~~---~~i~~~~~~~~~~~~~~~~v~Ifti 231 (354)
+ .+.| +|++..||..|.+.+ ..... ...+..++|||+|||.+++. .+..+.++ ..+|+||+|
T Consensus 92 l-~~~gG~~T~~~~aL~~a~~~l~~~~~~---~~~~~~~~iillTDG~~~~~~~~~~~~~~~~--------~~gi~v~~i 159 (223)
T 2b2x_A 92 I-VQRGGRQTMTALGIDTARKEAFTEARG---ARRGVKKVMVIVTDGESHDNYRLKQVIQDCE--------DENIQRFSI 159 (223)
T ss_dssp C-CCCCCSSCCHHHHHHHHHHTTSSGGGT---CCTTSEEEEEEEESSCCTTGGGHHHHHHHHH--------TTTEEEEEE
T ss_pred h-hccCCCCccHHHHHHHHHHHhcCcccC---CCCCCCeEEEEEcCCCCCCCccHHHHHHHHH--------HCCCEEEEE
Confidence 8 6544 499999999999874 32211 12456789999999999865 33444432 258999999
Q ss_pred EeCCCCCC---------HHHHHHHHhc-CCcEEEEeCChhHHHHHHHHHHHHhc
Q psy10004 232 LVGKEVAD---------YRDVKWMACA-NKGYYVHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 232 giG~~~~~---------~~~L~~iA~~-~~G~~~~i~~~~~~~~~l~~~~~~l~ 275 (354)
|+|.+. + ...|+.||.. ++|+|+.+.+.+++...+.++.+.++
T Consensus 160 gvG~~~-~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~~~i~~~ic 212 (223)
T 2b2x_A 160 AILGHY-NRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKALGERIF 212 (223)
T ss_dssp EECGGG-C---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGHHHHHTTTC
T ss_pred EecCcc-ccccccchhHHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhc
Confidence 999764 3 4789999998 78999999988887655554444443
No 13
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.86 E-value=1.8e-21 Score=172.86 Aligned_cols=173 Identities=16% Similarity=0.229 Sum_probs=132.5
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
.+.|++||||.||||. .++.+|.++..+++.|. ++++|+|+.|++.+...++. ....++..+.++|..
T Consensus 6 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~~~l-------~~~~~~~~~~~~i~~ 76 (213)
T 1pt6_A 6 TQLDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNL-------NKYSSTEEVLVAAKK 76 (213)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEEECT-------TTCSSHHHHHHHHHT
T ss_pred CCccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEEEec-------cccCCHHHHHHHHHh
Confidence 5789999999999998 58999999999999885 78999999999998776552 123457778889998
Q ss_pred hcCCC-C-CCcHHHHHHHHHHHH-HhccccCCCCCCCcceEEEeccCCCCchH---HHHHHhhhcccCCCCCCCeEEEEE
Q psy10004 158 IGDAN-N-IANFTVALTRAFNIL-ENARNDKKTGADCNQAIMVVTDGASENYK---EVFEEFNWRGQNDSTLWPVRVFSY 231 (354)
Q Consensus 158 l~~~~-G-~T~~~~aL~~A~~~l-~~~~~~~~~~~~~~~~IillTDG~~~~~~---~i~~~~~~~~~~~~~~~~v~Ifti 231 (354)
+ .+. | +|++..||..|.+.+ ..... ...+..++|||+|||.+++.. +..+.++ ..+|+||+|
T Consensus 77 l-~~~~G~~T~~~~aL~~a~~~l~~~~~~---~r~~~~~~iillTDG~~~~~~~~~~~~~~~~--------~~gi~i~~i 144 (213)
T 1pt6_A 77 I-VQRGGRQTMTALGTDTARKEAFTEARG---ARRGVKKVMVIVTDGESHDNHRLKKVIQDCE--------DENIQRFSI 144 (213)
T ss_dssp C-CCCCCSSCCHHHHHHHHHHTTTSGGGT---CCTTCEEEEEEEESSCCSCSHHHHHHHHHHH--------HTTEEEEEE
T ss_pred c-cCCCCCcccHHHHHHHHHHHhcCcccC---CCCCCCeEEEEEcCCCCCCCccHHHHHHHHH--------HCCCEEEEE
Confidence 8 654 4 489999999999874 32221 124567999999999998653 3333332 247999999
Q ss_pred EeCCCCCC---------HHHHHHHHhc-CCcEEEEeCChhHHHHHHHHHHHHhc
Q psy10004 232 LVGKEVAD---------YRDVKWMACA-NKGYYVHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 232 giG~~~~~---------~~~L~~iA~~-~~G~~~~i~~~~~~~~~l~~~~~~l~ 275 (354)
|+|... + ...|+.||.. ++|+|+.+.+.+++...+..+.+.|+
T Consensus 145 gig~~~-~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i~~~l~~~i~ 197 (213)
T 1pt6_A 145 AILGSY-NRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIF 197 (213)
T ss_dssp EECHHH-HHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGGHHHHHHHHT
T ss_pred Eecccc-ccccccchhhHHHHHHHhCCCchhcEEEeCCHHHHHHHHHHHHHhhe
Confidence 999643 2 4789999998 67899999998887766666555554
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.86 E-value=5.2e-21 Score=168.24 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=132.5
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
.+.|++||||.||||. .++.+|+++..+++.|. ++++|+|+.|++.++..++. . ...++..+.++|+.
T Consensus 5 ~~~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~~~l-----~--~~~~~~~~~~~i~~ 75 (200)
T 1v7p_C 5 SLIDVVVVCDESNSIY--PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNL-----N--TYKTKEEMIVATSQ 75 (200)
T ss_dssp -CEEEEEEEECCTTCC--CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEEECT-----T--TCSSHHHHHHHHHH
T ss_pred CcccEEEEEECCCCcc--cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEEEeC-----C--CcCCHHHHHHHHHh
Confidence 4789999999999998 48999999999999986 68999999999998775541 1 23467888899999
Q ss_pred hcCCC-C-CCcHHHHHHHHHHH-HHhccccCCCCCCCcceEEEeccCCCCchH---HHHHHhhhcccCCCCCCCeEEEEE
Q psy10004 158 IGDAN-N-IANFTVALTRAFNI-LENARNDKKTGADCNQAIMVVTDGASENYK---EVFEEFNWRGQNDSTLWPVRVFSY 231 (354)
Q Consensus 158 l~~~~-G-~T~~~~aL~~A~~~-l~~~~~~~~~~~~~~~~IillTDG~~~~~~---~i~~~~~~~~~~~~~~~~v~Ifti 231 (354)
+ .+. | +|++..||..|.+. +...... .++..++|||+|||.+++.. +..+.++ ..+|+||+|
T Consensus 76 l-~~~~G~~T~~~~al~~a~~~~~~~~~g~---r~~~~~~ivllTDG~~~~~~~~~~~~~~~~--------~~gi~i~~i 143 (200)
T 1v7p_C 76 T-SQYGGDLTNTFGAIQYARKYAYSAASGG---RRSATKVMVVVTDGESHDGSMLKAVIDQCN--------HDNILRFGI 143 (200)
T ss_dssp C-CCCCCSCCCHHHHHHHHHHHTTSGGGTC---CTTSEEEEEEEESSCCSCGGGHHHHHHHHH--------HTTEEEEEE
T ss_pred h-hccCCCCCcHHHHHHHHHHhhcccccCC---CCCCCeEEEEEccCCCCCcccHHHHHHHHH--------HCCCEEEEE
Confidence 8 654 4 59999999999996 4332221 24567899999999998653 3444442 247999999
Q ss_pred EeC-----CCCCC----HHHHHHHHhcCCc-EEEEeCChhHHHHHHHHHHHHhc
Q psy10004 232 LVG-----KEVAD----YRDVKWMACANKG-YYVHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 232 giG-----~~~~~----~~~L~~iA~~~~G-~~~~i~~~~~~~~~l~~~~~~l~ 275 (354)
|+| .+. + ...|+.||..++| +++.+.+.+++...+..+.+.++
T Consensus 144 gvg~~~~~~~~-~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~~~i~~~ic 196 (200)
T 1v7p_C 144 AVLGYLNRNAL-DTKNLIKEIKAIASIPTERYFFNVSDEAALLEKAGTLGEQIF 196 (200)
T ss_dssp EECHHHHHTTC-CCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHHHHHHHHHH
T ss_pred Eeccccccccc-chhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHHHHHHhhhc
Confidence 994 333 4 5779999999987 45678888888777666666654
No 15
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.86 E-value=8.2e-21 Score=164.29 Aligned_cols=169 Identities=13% Similarity=0.156 Sum_probs=124.6
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHc-CCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhhhc
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTL-GNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIG 159 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L-~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l~ 159 (354)
.|.|++||||+||||.+ .+...+.++..++..+ .++++|+|+.|++.++..++. . .+...+..+|+.+.
T Consensus 6 ~~~div~vlD~SgSM~~-~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~l-----~----~~~~~~~~~i~~l~ 75 (185)
T 3n2n_F 6 GGFDLYFILDKSGSVLH-HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKL-----T----EDREQIRQGLEELQ 75 (185)
T ss_dssp SEEEEEEEEECSGGGGG-GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEEEE-----E----CCHHHHHHHHHHHH
T ss_pred CCeeEEEEEeCCCChhh-hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEecc-----C----CCHHHHHHHHHHHh
Confidence 68999999999999987 4777788888877764 578999999999998876541 1 25566666666662
Q ss_pred --CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchH-----HHHHHhhhcccCCCCCCCeEEEEEE
Q psy10004 160 --DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYK-----EVFEEFNWRGQNDSTLWPVRVFSYL 232 (354)
Q Consensus 160 --~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~-----~i~~~~~~~~~~~~~~~~v~Iftig 232 (354)
.++|+|++..||..|.+.+...... +....++|||+|||.+++.. ...+.++ ..+++||+||
T Consensus 76 ~~~~~g~T~~~~al~~a~~~l~~~~~~---~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~--------~~gi~i~~ig 144 (185)
T 3n2n_F 76 KVLPGGDTYMHEGFERASEQIYYENRQ---GYRTASVIIALTDGELHEDLFFYSEREANRSR--------DLGAIVYAVG 144 (185)
T ss_dssp TCCCCSCCCHHHHHHHHHHHHHHHHTT---CBCEEEEEEEEECCCCCHHHHHHHHHHHHHHH--------HTTEEEEEEE
T ss_pred hhcCCCCccHHHHHHHHHHHHhhcccc---CCCCCcEEEEEcCCCCCCCcccchHHHHHHHH--------HCCCEEEEEE
Confidence 4789999999999999987543221 23457899999999998553 3333332 2479999999
Q ss_pred eCCCCCCHHHHHHHHhcCCcEEEEeCC-hhHHHHHHHHHHHH
Q psy10004 233 VGKEVADYRDVKWMACANKGYYVHLST-LAEVRDQILSYVPV 273 (354)
Q Consensus 233 iG~~~~~~~~L~~iA~~~~G~~~~i~~-~~~~~~~l~~~~~~ 273 (354)
+| +. +...|+.||..+ |.++.+.+ .+++...+.++.+.
T Consensus 145 vg-~~-~~~~L~~iA~~~-~~~~~~~~~~~~L~~~~~~i~~~ 183 (185)
T 3n2n_F 145 VK-DF-NETQLARIADSK-DHVFPVNDGFQALQGIIHSILKK 183 (185)
T ss_dssp CS-SC-CHHHHTTTSSSG-GGEEEHHHHHHHHHHHHHHHHHT
T ss_pred ec-cC-CHHHHHHHhCCC-CCeEEeccHHHHHHHHHHHHHHh
Confidence 99 44 899999999765 55555665 66665555555444
No 16
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=99.85 E-value=4.5e-22 Score=172.20 Aligned_cols=167 Identities=14% Similarity=0.199 Sum_probs=124.4
Q ss_pred CceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcCCC-CeEEEEEeecccccccccccccccccChhhHHHHHHHHhhhcC
Q psy10004 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNN-DYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMIGD 160 (354)
Q Consensus 82 p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~~~-d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l~~ 160 (354)
|.|++||||.||||.+.+++.+|+++..+++.|.+. ++|+|+.|++.++..++ +. ...+...+...++.+..
T Consensus 2 ~~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~~~-l~------~~~~~~~~~~~~~~i~~ 74 (179)
T 1mjn_A 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFD-FS------DYVKRKDPDALLKHVKH 74 (179)
T ss_dssp CEEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEEEC-HH------HHHHHCCHHHHHTTCCC
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEEEc-Cc------ccCCHHHHHHHHHhccc
Confidence 789999999999999999999999999999999754 69999999999876544 11 11222345566777734
Q ss_pred CCCCCcHHHHHHHHHHH-HHhccccCCCCCCCcceEEEeccCCCCchHHHHHHhhhcccCCCCCCCeEEEEEEeCCCCCC
Q psy10004 161 ANNIANFTVALTRAFNI-LENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVAD 239 (354)
Q Consensus 161 ~~G~T~~~~aL~~A~~~-l~~~~~~~~~~~~~~~~IillTDG~~~~~~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~~ 239 (354)
..|+|++..||..|.+. +...... .++.+++|||+|||.+++.... . ...+++||+||+|... +
T Consensus 75 ~~g~T~~~~aL~~a~~~~~~~~~g~---r~~~~~~iillTDG~~~~~~~~---~--------~~~~i~i~~igvG~~~-~ 139 (179)
T 1mjn_A 75 MLLLTNTFGAINYVATEVFREELGA---RPDATKVLIIITDGEATDSGNI---D--------AAKDIIRYIIGIGKHF-Q 139 (179)
T ss_dssp CCBCCCHHHHHHHHHHHTSSGGGTC---CTTSEEEEEEEESSCCSSCSCC---G--------GGTTSEEEEEEESGGG-C
T ss_pred CCCCChHHHHHHHHHHHhcccccCC---CCCCCeEEEEEcCCCCCCCcch---H--------HHCCCEEEEEEccccc-c
Confidence 46899999999999964 4332222 2457799999999998865321 1 1247999999999865 4
Q ss_pred ----HHHHHHHHhcCCc-EEEEeCChhHHHHHHHHH
Q psy10004 240 ----YRDVKWMACANKG-YYVHLSTLAEVRDQILSY 270 (354)
Q Consensus 240 ----~~~L~~iA~~~~G-~~~~i~~~~~~~~~l~~~ 270 (354)
..+|+.||+.++| +++.+.+.+++...+.++
T Consensus 140 ~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~i~~~i 175 (179)
T 1mjn_A 140 TKESQETLHKFASKPASEFVKILDTFEKLKDLCTEL 175 (179)
T ss_dssp SHHHHHTTGGGSCSCHHHHEEEESSGGGSCCHHHHH
T ss_pred ccccHHHHHHHhCCccHhcEEEeCCHHHHHHHHHHH
Confidence 4789999999887 567788877765544443
No 17
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=99.84 E-value=2.5e-20 Score=186.35 Aligned_cols=187 Identities=18% Similarity=0.199 Sum_probs=142.4
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHc---CCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHh
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVE 156 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L---~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~ 156 (354)
..+.|++||||.||||.+.+++.+|+++..+++.| .++++|+||.|++.++..++. ......+++.+..+|+
T Consensus 7 ~~~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~~~l-----~~~~~~~~~~~~~~l~ 81 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSV-----LNDNSRDMTEVISSLE 81 (509)
T ss_dssp SSEEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEEECT-----TSGGGGCHHHHHHHHH
T ss_pred CCCeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCceeEec-----cCCCCCCHHHHHHHHH
Confidence 46889999999999999999999999999999998 789999999999998876652 2223446788999999
Q ss_pred hhcCCC-----CCCcHHHHHHHHHHHHHhccccCCC----CCCCcceEEEeccCCCCc---hHHHHHHhhhc-ccCCCCC
Q psy10004 157 MIGDAN-----NIANFTVALTRAFNILENARNDKKT----GADCNQAIMVVTDGASEN---YKEVFEEFNWR-GQNDSTL 223 (354)
Q Consensus 157 ~l~~~~-----G~T~~~~aL~~A~~~l~~~~~~~~~----~~~~~~~IillTDG~~~~---~~~i~~~~~~~-~~~~~~~ 223 (354)
.+ .+. |+|++..||..|.++|.......+. .....++|||||||.+++ +....+.++.. .......
T Consensus 82 ~l-~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (509)
T 2odp_A 82 NA-NYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTAVDHIREILNINQKRN 160 (509)
T ss_dssp TC-CGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHHHHHHHHHTTCCSTTG
T ss_pred hc-ccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHHHHHHHHHhhcccccc
Confidence 88 554 9999999999999999653221100 013558999999998874 34444444210 0000124
Q ss_pred CCeEEEEEEeCCCCCCHHHHHHHHhcCCcE--EEEeCChhHHHHHHHHHHH
Q psy10004 224 WPVRVFSYLVGKEVADYRDVKWMACANKGY--YVHLSTLAEVRDQILSYVP 272 (354)
Q Consensus 224 ~~v~IftigiG~~~~~~~~L~~iA~~~~G~--~~~i~~~~~~~~~l~~~~~ 272 (354)
.+++||+||+|.+..+...|+.||..++|. ++.+.+.+++...+.++++
T Consensus 161 ~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~~ 211 (509)
T 2odp_A 161 DYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHMLD 211 (509)
T ss_dssp GGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHEE
T ss_pred CceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhhc
Confidence 689999999998723899999999999996 8889999887776666544
No 18
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=99.84 E-value=3.9e-20 Score=192.94 Aligned_cols=189 Identities=15% Similarity=0.206 Sum_probs=146.7
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHh
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVE 156 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~ 156 (354)
..+.||+||||.||||.+.+++.+|+++..+++.|. .+++|+||.|++.+...++ +......+.+.++++|+
T Consensus 241 ~~~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~~~-----l~~~~~~~~~~~~~~i~ 315 (741)
T 3hrz_D 241 SGSMNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLN 315 (741)
T ss_dssp TCEEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHT
T ss_pred CCceeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCceeEe-----ecccCCcCHHHHHHHHH
Confidence 357899999999999999999999999999999876 4689999999999877655 22233457788999999
Q ss_pred hhcC-----CCCCCcHHHHHHHHHHHHHhccccC-CCCCCCcceEEEeccCCCC---chHHHHHHhhh----cccC-CCC
Q psy10004 157 MIGD-----ANNIANFTVALTRAFNILENARNDK-KTGADCNQAIMVVTDGASE---NYKEVFEEFNW----RGQN-DST 222 (354)
Q Consensus 157 ~l~~-----~~G~T~~~~aL~~A~~~l~~~~~~~-~~~~~~~~~IillTDG~~~---~~~~i~~~~~~----~~~~-~~~ 222 (354)
.+ . ++|+|++..||..|+++|....... ....+..++|||||||.++ ++..+.+.+.. .... ...
T Consensus 316 ~l-~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~~~~~~~~~a~~~~ 394 (741)
T 3hrz_D 316 EI-NYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPR 394 (741)
T ss_dssp TC-CGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCTTCCC
T ss_pred hc-ccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHHHHhhccccccccc
Confidence 98 6 8999999999999999984221111 1123467899999999877 34444333221 0011 113
Q ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHhcCCc--EEEEeCChhHHHHHHHHHHHHhc
Q psy10004 223 LWPVRVFSYLVGKEVADYRDVKWMACANKG--YYVHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 223 ~~~v~IftigiG~~~~~~~~L~~iA~~~~G--~~~~i~~~~~~~~~l~~~~~~l~ 275 (354)
..+|+||+||+|.+. +...|+.||..++| +++.+.+.+++.+.+.++++.+.
T Consensus 395 ~~gi~i~~igvG~~~-~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~l~~~~~ 448 (741)
T 3hrz_D 395 EDYLDVYVFGVGPLV-NQVNINALASKKDNEQHVFKVKDMENLEDVFYQMIDESQ 448 (741)
T ss_dssp GGGEEEEEEECSSSC-CHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHHHHHHHS
T ss_pred ccCeeEEEEeCCCcC-CHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHHhhcccc
Confidence 568999999999876 89999999999998 58889999999998888888765
No 19
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=99.83 E-value=4.7e-20 Score=183.67 Aligned_cols=187 Identities=15% Similarity=0.187 Sum_probs=141.2
Q ss_pred CceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhhh
Q psy10004 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMI 158 (354)
Q Consensus 82 p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l 158 (354)
|.|++||||.||||.+.+++.+|+++..+++.|. .+++|+|+.|++.++..++ +......+.+.+.++|+.+
T Consensus 1 ~~div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~-----~~~~~~~~~~~~~~~l~~l 75 (497)
T 1rrk_A 1 SMNIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVK-----VSEADSSNADWVTKQLNEI 75 (497)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEEC-----TTSGGGGCHHHHHHHHHHC
T ss_pred CeeEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEeec-----cccccccCHHHHHHHHHhC
Confidence 5699999999999999999999999999998754 5799999999998876543 2223345678888888888
Q ss_pred cC-----CCCCCcHHHHHHHHHHHHHhcccc-CCCCCCCcceEEEeccCCCC---chHHHHHHhhhcc-----cCCCCCC
Q psy10004 159 GD-----ANNIANFTVALTRAFNILENARND-KKTGADCNQAIMVVTDGASE---NYKEVFEEFNWRG-----QNDSTLW 224 (354)
Q Consensus 159 ~~-----~~G~T~~~~aL~~A~~~l~~~~~~-~~~~~~~~~~IillTDG~~~---~~~~i~~~~~~~~-----~~~~~~~ 224 (354)
. +.|+|++..||..|.+++...... +.......++|||||||.++ ++....+.++... .......
T Consensus 76 -~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (497)
T 1rrk_A 76 -NYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPRED 154 (497)
T ss_dssp -CGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHHTTCSSCC-CCCGG
T ss_pred -cCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHHhhhhcccccchhc
Confidence 5 568999999999999998432110 00113466899999999887 4444444443110 0001234
Q ss_pred CeEEEEEEeCCCCCCHHHHHHHHhcCCc--EEEEeCChhHHHHHHHHHHHHhc
Q psy10004 225 PVRVFSYLVGKEVADYRDVKWMACANKG--YYVHLSTLAEVRDQILSYVPVMA 275 (354)
Q Consensus 225 ~v~IftigiG~~~~~~~~L~~iA~~~~G--~~~~i~~~~~~~~~l~~~~~~l~ 275 (354)
+|+||+||+|.+. +...|+.||..++| .|+.+.+.+++.+.+.+.++...
T Consensus 155 ~i~v~~igvG~~~-~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i~~~~ 206 (497)
T 1rrk_A 155 YLDVYVFGVGPLV-NQVNINALASKKDNEQHVCKVKDMECLEDVFYQMIDESQ 206 (497)
T ss_dssp GEEEEEEECSSSC-CHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHSCGGG
T ss_pred CeeEEEecCCCcc-CHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcccCCC
Confidence 8999999999876 89999999999999 99999999998888877766543
No 20
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=99.83 E-value=4.4e-20 Score=159.45 Aligned_cols=149 Identities=17% Similarity=0.118 Sum_probs=108.7
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
.+.||+||||.||||.+.+++.+|+++..+++.|. +.++|+|+.|++.+...++. ......++..+..+|+.
T Consensus 16 ~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~~~l-----~~~~~~~~~~~~~~i~~ 90 (178)
T 2xgg_A 16 NQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDL-----QSPNAVDKQLAAHAVLD 90 (178)
T ss_dssp TCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEEECT-----TSGGGSCHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEEEeC-----CCCCccCHHHHHHHHHh
Confidence 47999999999999999999999999999999986 34899999999998776552 11112267888999999
Q ss_pred hcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchHHH---HHHhhhcccCCCCCCCeEEEEEEeC
Q psy10004 158 IGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEV---FEEFNWRGQNDSTLWPVRVFSYLVG 234 (354)
Q Consensus 158 l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~~i---~~~~~~~~~~~~~~~~v~IftigiG 234 (354)
+..++|+|++..||..|.+.+...... ..++..++|||+|||.+++...+ .+.++ ..+|+||+||+|
T Consensus 91 l~~~~g~T~~~~aL~~a~~~l~~~~~g--~r~~~~~~iillTDG~~~~~~~~~~~~~~l~--------~~gi~v~~igvG 160 (178)
T 2xgg_A 91 MPYKKGSTNTSDGLKACKQILFTGSRP--GREHVPKLVIGMTDGESDSDFRTVRAAKEIR--------ELGGIVTVLAVG 160 (178)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHCCCT--TCTTSCEEEEEEESSCCCHHHHHSHHHHHHH--------HTTCEEEEEECC
T ss_pred CCCCCCCccHHHHHHHHHHHhcCcccC--CCCCCCEEEEEEcCCCCCCCccHHHHHHHHH--------HCCCEEEEEEcC
Confidence 933789999999999999986543211 12456799999999999865333 33332 247999999999
Q ss_pred CCCCCHHHHHH
Q psy10004 235 KEVADYRDVKW 245 (354)
Q Consensus 235 ~~~~~~~~L~~ 245 (354)
... +..+|+.
T Consensus 161 ~~~-~~~~l~~ 170 (178)
T 2xgg_A 161 HYV-AAALVPR 170 (178)
T ss_dssp -----------
T ss_pred CcC-CHHHHhc
Confidence 877 6666653
No 21
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=99.81 E-value=5.6e-22 Score=172.63 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=121.7
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHc-CCCCeEEEEEeec-ccccccccccccccccChhhHHHHHHHHhhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTL-GNNDYVNVLQFTS-VCKEVVPCFADILVQANLANVRELKMGVEMI 158 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L-~~~d~v~vi~Fs~-~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l 158 (354)
.|.+++||||+||||.|.+++.+|+++..+++.+ .++++++|+.|++ ....++| .+ .+...+...|..+
T Consensus 4 ~~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~~~--------~~-~~~~~~~~~i~~l 74 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQ--------PS-RSLTQTKRQLQGL 74 (189)
T ss_dssp SCCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCCBCTT--------TC-SCHHHHHHHHHHC
T ss_pred CCeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCceEecC--------CC-CCHHHHHHHHhcC
Confidence 6899999999999999999999999999999888 8999999999997 4544333 12 3677888999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchH---HHHHHhh--hcc-cCCCCCCCeEEEEEE
Q psy10004 159 GDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYK---EVFEEFN--WRG-QNDSTLWPVRVFSYL 232 (354)
Q Consensus 159 ~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~---~i~~~~~--~~~-~~~~~~~~v~Iftig 232 (354)
.++|+|++..||..|.+++.... ..+..+.|||+|||.++... .....+. ... .......+|.||+||
T Consensus 75 -~~~g~T~~~~al~~a~~~l~~~~-----~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~ig 148 (189)
T 2x31_A 75 -PGGGGTPLASGMEMAMVTAKQAR-----SRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPAVIID 148 (189)
T ss_dssp -CCCBCCCCHHHHHHHHHHHHTCT-----TTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCCTHHH
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcc-----CCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeEEEEe
Confidence 99999999999999999997632 12456899999999987531 1000000 000 000123568999999
Q ss_pred eCCCCCCHHHHHHHHhcCCcEEEEeC
Q psy10004 233 VGKEVADYRDVKWMACANKGYYVHLS 258 (354)
Q Consensus 233 iG~~~~~~~~L~~iA~~~~G~~~~i~ 258 (354)
+|.. +...|+.||..++|.|+++.
T Consensus 149 ~g~~--~~~~L~~iA~~~~G~~~~~~ 172 (189)
T 2x31_A 149 TAMR--PNPALVDLARTMDAHYIALP 172 (189)
T ss_dssp HHHS--SCSSSCSTTTEEEESSTTTH
T ss_pred cCCC--CHHHHHHHHHhcCCeEEECC
Confidence 9975 56789999999999888763
No 22
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.70 E-value=5.1e-18 Score=182.82 Aligned_cols=178 Identities=14% Similarity=0.229 Sum_probs=134.4
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcCCC-CeEEEEEeecccccccccccccccccChhhHHHHHHHHhhh
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNN-DYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEMI 158 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~~~-d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~l 158 (354)
..+.||+||||.||||.+.+++.+|+++..+++.|.+. ++|+||.|++.++..++. . ...+...+..+++.+
T Consensus 128 ~~~~DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~~l-t------~~~~~~~l~~ai~~i 200 (1095)
T 3k6s_A 128 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTF-E------EFRRSSNPLSLLASV 200 (1095)
T ss_dssp CCCEEEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEECS-H------HHHSCSCGGGGTTTC
T ss_pred CCCccEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEecC-c------ccCCHHHHHHHHhhh
Confidence 34789999999999999999999999999999999865 899999999998776541 1 112334456677777
Q ss_pred cCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC-c---hHHHHHHhhhcccCCCCCCCeEEEEEEeC
Q psy10004 159 GDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE-N---YKEVFEEFNWRGQNDSTLWPVRVFSYLVG 234 (354)
Q Consensus 159 ~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~-~---~~~i~~~~~~~~~~~~~~~~v~IftigiG 234 (354)
...+|+|++..||..|.+.+...... ..++..++|||||||.++ + ..+..++++ . .+|+||+||+|
T Consensus 201 ~~~gG~T~~g~AL~~a~~~lf~~~~g--~R~~~~kviIllTDG~~~~d~~~~~~~a~~~r--~------~GI~i~aIGVG 270 (1095)
T 3k6s_A 201 HQLQGFTYTATAIQNVVHRLFHASYG--ARRDAAKILIVITDGKKEGDSLDYKDVIPMAD--A------AGIIRYAIGVG 270 (1095)
T ss_dssp CCCCSCBCHHHHHHHHHTTTTSTTTT--CCSSSEEEEEEEESSCCBSCSSCHHHHHHHHH--H------HCEEECCEEBS
T ss_pred hcccCCChHHHHHHHHHHhhcccccc--CCCCCCeEEEEEeCCCcCCCchhHHHHHHHHH--H------CCCEEEEEecc
Confidence 56789999999999998865432111 234567999999999994 3 344555443 2 47999999999
Q ss_pred CCC---CCHHHHHHHHhcCCc-EEEEeCChhHHHHHHHHHHHHh
Q psy10004 235 KEV---ADYRDVKWMACANKG-YYVHLSTLAEVRDQILSYVPVM 274 (354)
Q Consensus 235 ~~~---~~~~~L~~iA~~~~G-~~~~i~~~~~~~~~l~~~~~~l 274 (354)
... .+..+|+.||..++| +++.+.+.+++...+.++.+.|
T Consensus 271 ~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~L~~i~~~L~~~I 314 (1095)
T 3k6s_A 271 LAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKDIQNQLKEKI 314 (1095)
T ss_dssp SGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGGGSSTTTHHHHH
T ss_pred cccccccCHHHHHHHHcCCCCceEEEcCCHHHHHHHHHHhhhhh
Confidence 861 278999999999876 7777888777666555555554
No 23
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.69 E-value=7.6e-16 Score=134.58 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=115.4
Q ss_pred ceEEEEEeCCCCCCc-----chHHHHHHHHHHHHHH---cCCCCeEEEEEeecc-cccccccccccccccChhhHHHHHH
Q psy10004 83 KDMVILLDNSGSMMG-----QRREIARHVINNLLDT---LGNNDYVNVLQFTSV-CKEVVPCFADILVQANLANVRELKM 153 (354)
Q Consensus 83 ~dvvillD~SgSM~g-----~~~~~ak~a~~~ll~~---L~~~d~v~vi~Fs~~-~~~~~~c~~~~lv~~~~~n~~~~~~ 153 (354)
..++|+||.|+||.. +|++.+|.++..++.. ..++|+++||.|+++ +..+.|. ..+...+..
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~pl---------T~d~~~i~~ 73 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTL---------TRDYGKFLS 73 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEE---------ESCHHHHHH
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCC---------CCCHHHHHH
Confidence 368999999999973 6899999999888764 368899999999985 6554331 245788899
Q ss_pred HHhhhcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCchHHHHHHhhhcccCCCCCCCeEEEEEEe
Q psy10004 154 GVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLV 233 (354)
Q Consensus 154 ~i~~l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~~~i~~~~~~~~~~~~~~~~v~Iftigi 233 (354)
.|+.+ .+.|+|++..||..|.+.|.+.... ....++|||++|+...++.++.+..+.. ...+|+|++||+
T Consensus 74 ~L~~l-~~~g~t~l~~aL~~A~~~l~~~~~~----~~~~riiil~~~~~~~~~~~~~~~a~~l-----k~~gi~v~~Ig~ 143 (192)
T 2x5n_A 74 AMHDL-PVRGNAKFGDGIQIAQLALKHRENK----IQRQRIVAFVGSPIVEDEKNLIRLAKRM-----KKNNVAIDIIHI 143 (192)
T ss_dssp HHTTC-CCCSCCCHHHHHHHHHHHHHTCSCT----TSEEEEEEEECSCCSSCHHHHHHHHHHH-----HHTTEEEEEEEE
T ss_pred HHHcC-CCCCCchHHHHHHHHHHHHHhcccc----CCCceEEEEEECCCCCCchhHHHHHHHH-----HHCCCEEEEEEe
Confidence 99999 9999999999999999999764311 1234567777776644454443332211 125899999999
Q ss_pred CCCCCCHHHHHHHHhc----CCcEEEEeCChh
Q psy10004 234 GKEVADYRDVKWMACA----NKGYYVHLSTLA 261 (354)
Q Consensus 234 G~~~~~~~~L~~iA~~----~~G~~~~i~~~~ 261 (354)
|.+..+.. |+.+|.. .++.|..++...
T Consensus 144 G~~~~~~~-l~~la~~~n~~~~s~~~~~~~~~ 174 (192)
T 2x5n_A 144 GELQNESA-LQHFIDAANSSDSCHLVSIPPSP 174 (192)
T ss_dssp SCC---CH-HHHHHHHHCSTTCCEEEEECCCS
T ss_pred CCCCccHH-HHHHHHhccCCCceEEEEecCcc
Confidence 98765556 9999887 334777777654
No 24
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.7e-16 Score=141.82 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=125.9
Q ss_pred eEEEEEeCCCCCCc-----chHHHHHHHHHHHHHH---cCCCCeEEEEEeecccccccccccccccccChhhHHHHHHHH
Q psy10004 84 DMVILLDNSGSMMG-----QRREIARHVINNLLDT---LGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGV 155 (354)
Q Consensus 84 dvvillD~SgSM~g-----~~~~~ak~a~~~ll~~---L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i 155 (354)
.+|||||+|+||.. +|++.+|.++..+++. +.+.|+|+||+|.+....+. .+ .+.+...+..+|
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl-------~p-lT~D~~~il~aL 76 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL-------ST-FTAEFGKILAGL 76 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE-------EE-EESCHHHHHHHH
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec-------cC-CcchHHHHHHHh
Confidence 37999999999974 5899999999999875 46899999999987653321 11 234678899999
Q ss_pred hhhcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC-chHHHHHHhhhcccCCCCCCCeEEEEEEeC
Q psy10004 156 EMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE-NYKEVFEEFNWRGQNDSTLWPVRVFSYLVG 234 (354)
Q Consensus 156 ~~l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~-~~~~i~~~~~~~~~~~~~~~~v~IftigiG 234 (354)
+.+ .++|+|++..||..|+..|..... ...++.||++|||..+ +..++.+..+. . ...+|+|++||||
T Consensus 77 ~~l-~~~G~T~l~~gL~~A~~aLk~~~~-----k~~~~rIIlf~ds~~~~~~~~l~~lak~-l----kk~gI~v~vIgFG 145 (268)
T 4b4t_W 77 HDT-QIEGKLHMATALQIAQLTLKHRQN-----KVQHQRIVAFVCSPISDSRDELIRLAKT-L----KKNNVAVDIINFG 145 (268)
T ss_dssp TTC-CCCSCCCHHHHHHHHHHHHHTCSC-----TTSEEEEEEEECSCCSSCHHHHHHHHHH-H----HHHTEEEEEEEES
T ss_pred hhc-CcCCCCChHHHHHHHHHHHHhccc-----CCCceEEEEEECCCCCCCHHHHHHHHHH-H----HHcCCEEEEEEeC
Confidence 999 999999999999999999986533 3456779999998765 33444433321 1 1258999999999
Q ss_pred CCCCCHHHHHHHHhcCCc------EEEEeCChhH-HHHHHHHHHHHhccchhc
Q psy10004 235 KEVADYRDVKWMACANKG------YYVHLSTLAE-VRDQILSYVPVMARPLVL 280 (354)
Q Consensus 235 ~~~~~~~~L~~iA~~~~G------~~~~i~~~~~-~~~~l~~~~~~l~~pl~~ 280 (354)
.+..+...|+.++...+| ++..|+.... +.+.| +++|++.
T Consensus 146 ~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~g~~~lsd~l------~~s~i~~ 192 (268)
T 4b4t_W 146 EIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENI------ASSPIIL 192 (268)
T ss_dssp SCCSSCCHHHHHHHHHCSSTTTSCEEEEECCCSSCHHHHH------HTSTTSC
T ss_pred CCccchHHHHHHHHHhcCCCCCceeEEEeCCCCccHHHHH------hcCCccc
Confidence 876678899999765433 6777765433 33322 3567664
No 25
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=99.57 E-value=4.9e-14 Score=148.29 Aligned_cols=120 Identities=28% Similarity=0.356 Sum_probs=88.3
Q ss_pred cCCCceEEEEEeCCCCCCcc------hHHHHHHHHHHHHHHcC--CCCeEEEEEeeccccc-----ccccccc-------
Q psy10004 79 AASPKDMVILLDNSGSMMGQ------RREIARHVINNLLDTLG--NNDYVNVLQFTSVCKE-----VVPCFAD------- 138 (354)
Q Consensus 79 ~~~p~dvvillD~SgSM~g~------~~~~ak~a~~~ll~~L~--~~d~v~vi~Fs~~~~~-----~~~c~~~------- 138 (354)
...|.|||||||.||||.+. |++.+|+++..+++.|. ++|+|+||.|++.+.. +..|+.+
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n 300 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLN 300 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEEC
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccccccccccc
Confidence 35799999999999999986 47789999999999885 5899999999987632 1111110
Q ss_pred ----------cc-----------cccChhhHHHHHHHHhh----------hcCCCCCCcHHHHHHHHHHHHHhccccCCC
Q psy10004 139 ----------IL-----------VQANLANVRELKMGVEM----------IGDANNIANFTVALTRAFNILENARNDKKT 187 (354)
Q Consensus 139 ----------~l-----------v~~~~~n~~~~~~~i~~----------l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~ 187 (354)
.+ ...+..++..++.+|.. + .+.|+|++..||..|.++|....
T Consensus 301 ~~~~w~~~~t~~t~~~~~~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l-~~~GGT~i~~AL~~A~~lL~~~~----- 374 (893)
T 2ww8_A 301 DSLFWNYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLM-YQFGATFTQKALMKADEILTQQA----- 374 (893)
T ss_dssp CCTTSCTTCCEEEEECCBCCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGG-GGGCSCCHHHHHHHHHHHHHHHS-----
T ss_pred cccccccccccccccccccccccccCCHHHHHHHHHHHhhhcccccccccc-ccCCCChHHHHHHHHHHHHHhhc-----
Confidence 00 01123445666777764 3 55899999999999999997432
Q ss_pred CCCCcceEEEeccCCCC
Q psy10004 188 GADCNQAIMVVTDGASE 204 (354)
Q Consensus 188 ~~~~~~~IillTDG~~~ 204 (354)
.+...++|||||||.++
T Consensus 375 ~~~~~kvIILLTDG~pt 391 (893)
T 2ww8_A 375 RQNSQKVIFHITDGVPT 391 (893)
T ss_dssp CSSSEEEEEEEESSCCS
T ss_pred ccCCCeEEEEEcCCCCC
Confidence 12456899999999987
No 26
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=99.32 E-value=1.1e-11 Score=125.18 Aligned_cols=140 Identities=18% Similarity=0.218 Sum_probs=96.0
Q ss_pred ceEEEEEeCCCCCCc------chHHHHHHHHHHHHHH---cCCCCeEEEEEeeccccccccc-----cccc--ccccChh
Q psy10004 83 KDMVILLDNSGSMMG------QRREIARHVINNLLDT---LGNNDYVNVLQFTSVCKEVVPC-----FADI--LVQANLA 146 (354)
Q Consensus 83 ~dvvillD~SgSM~g------~~~~~ak~a~~~ll~~---L~~~d~v~vi~Fs~~~~~~~~c-----~~~~--lv~~~~~ 146 (354)
-++||+||.|+||.. ++++.+++++..++.. .+++|+|+||.|++.... .|. |... +...+..
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~-~plt~d~~y~~i~vl~~l~~~ 86 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTD-NPLSGGDQYQNITVHRHLMLP 86 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB-STTCTTTCSTTEEEEEEEECC
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCC-CccccccCCCceEEeecCCCC
Confidence 589999999999964 5899999999999984 689999999999987632 110 1100 1111112
Q ss_pred hHHHHHHHHhh-hcCCC-CCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC----chHHHHHHhhhcccCC
Q psy10004 147 NVRELKMGVEM-IGDAN-NIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE----NYKEVFEEFNWRGQND 220 (354)
Q Consensus 147 n~~~~~~~i~~-l~~~~-G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~----~~~~i~~~~~~~~~~~ 220 (354)
+...+ ..|.. + .++ ++|++..||..|.++|.+..... ....+.|||+|||..+ ....+.+.++
T Consensus 87 ~~~~l-~~l~~~l-~~~~~~t~i~~al~~A~~~l~~~~~~~---k~~~krIiLlTDg~~~~~~~~~~~~a~~l~------ 155 (565)
T 1jey_B 87 DFDLL-EDIESKI-QPGSQQADFLDALIVSMDVIQHETIGK---KFEKRHIEIFTDLSSRFSKSQLDIIIHSLK------ 155 (565)
T ss_dssp CHHHH-HHHHTTC-CCCSSCCCHHHHHHHHHHHHHHHSSSS---CCSEEEEEEECCCCSCCCCTTHHHHHHHHH------
T ss_pred CHHHH-HHHHhhc-cCCCccccHHHHHHHHHHHHHHHhhcc---cccccEEEEEeCCCCCCCHHHHHHHHHHHH------
Confidence 22323 34555 6 554 78999999999999997652211 1135789999999866 2344555443
Q ss_pred CCCCCeEEE-EEEeCCC
Q psy10004 221 STLWPVRVF-SYLVGKE 236 (354)
Q Consensus 221 ~~~~~v~If-tigiG~~ 236 (354)
..+|.|+ +||+|.+
T Consensus 156 --~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 156 --KCDISLQFFLPFSLG 170 (565)
T ss_dssp --HTTEEEEEEESSCCC
T ss_pred --hcCcEEEEEeccCCC
Confidence 2579999 8888754
No 27
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.26 E-value=2.1e-11 Score=122.57 Aligned_cols=130 Identities=11% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCceEEEEEeCCCCCCc----chHHHHHHHHHHHHHHcCCCCeEEEEEeecccccccccccccccccCh-hhHHHHHHH
Q psy10004 80 ASPKDMVILLDNSGSMMG----QRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANL-ANVRELKMG 154 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g----~~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~-~n~~~~~~~ 154 (354)
..+.+++|+||+||||.+ .++...+.++...+..+.++|+++|+.|++.... ++ .+. .++..+.+.
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~~~~-~~--------~t~~~~l~~~l~~ 436 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDEMLP-CP--------ITVNMLLHEVVEK 436 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSSEEC-CS--------CCTTSCHHHHHHH
T ss_pred CCCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCCceE-cC--------CCCcccHHHHHHH
Confidence 468999999999999985 3455533333334455678999999999974321 11 121 234444454
Q ss_pred HhhhcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCc----hHHHHHHhhhcccCCCCCCCeEEEE
Q psy10004 155 VEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASEN----YKEVFEEFNWRGQNDSTLWPVRVFS 230 (354)
Q Consensus 155 i~~l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~----~~~i~~~~~~~~~~~~~~~~v~Ift 230 (354)
+..+ ++|+|++..||..|.+.- ....+|||+|||..+. +.+.++.+.. .. ..++++|+
T Consensus 437 l~~~--~~GgT~i~~aL~~a~~~~-----------~~~~~iIliTDg~~~~g~~~~~~~l~~~~~-~~----~~~v~l~~ 498 (538)
T 1yvr_A 437 MSDI--TMGSTDCALPMLWAQKTN-----------TAADIFIVFTDCETNVEDVHPATALKQYRE-KM----GIPAKLIV 498 (538)
T ss_dssp HTTC--CCSCCCTTHHHHHHHHTT-----------CCCSEEEEEECCCCCSSSCCHHHHHHHHHH-HH----TCCCEEEE
T ss_pred HhcC--CCCCCcHHHHHHHHHhcc-----------CCCCEEEEEcCCCCCCCCCCHHHHHHHHHH-Hh----CCCcEEEE
Confidence 5432 589999999999997641 1236899999998763 3455555542 21 23688999
Q ss_pred EEeCCC
Q psy10004 231 YLVGKE 236 (354)
Q Consensus 231 igiG~~ 236 (354)
||+|..
T Consensus 499 igig~~ 504 (538)
T 1yvr_A 499 CAMTSN 504 (538)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 999975
No 28
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=99.15 E-value=7.5e-11 Score=105.11 Aligned_cols=93 Identities=22% Similarity=0.197 Sum_probs=74.3
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeeccccccccccccccc-ccChhhHHHHHHHH
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFADILV-QANLANVRELKMGV 155 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~~~c~~~~lv-~~~~~n~~~~~~~i 155 (354)
..|.+|+||||+||||. .++..+|.++..++..+. ..++|+||+|+++...... ++ +.+. +. .+...+
T Consensus 132 ~~~~~vvfLVDtSgSM~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~-----ll~pfT~-~~-~~~~~l 203 (242)
T 3rag_A 132 EVALHLVVCLDTSASMR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATR-----LVQPFSS-EV-NVAALE 203 (242)
T ss_dssp HSCEEEEEEEECSGGGT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCE-----EEEEEES-SC-CHHHHH
T ss_pred cCCCCEEEEEECcccHH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCcccee-----ecCCCCC-hH-HHHHHH
Confidence 37899999999999998 589999999999999875 5799999999998632111 11 2222 22 566788
Q ss_pred hhhcCCCCCCcHHHHHHHHHHHHHhc
Q psy10004 156 EMIGDANNIANFTVALTRAFNILENA 181 (354)
Q Consensus 156 ~~l~~~~G~T~~~~aL~~A~~~l~~~ 181 (354)
..+ .++|+|+++.||..|++++.+.
T Consensus 204 ~~L-~agG~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 204 AEL-VARGGTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp HHC-CCCSCCCHHHHHHHHHHHHHHH
T ss_pred hhC-CCCCCCcHHHHHHHHHHHHHHH
Confidence 889 9999999999999999998643
No 29
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.06 E-value=5.8e-10 Score=111.84 Aligned_cols=130 Identities=11% Similarity=0.008 Sum_probs=83.0
Q ss_pred CCCceEEEEEeCCCCCCc-c-----hHHHHHHHHHHHHHHcCCCCeEEEEEeecccccccccccccccccChhhHHHHHH
Q psy10004 80 ASPKDMVILLDNSGSMMG-Q-----RREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKM 153 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g-~-----~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~ 153 (354)
..+.+++++||+||||.+ . ++..+..++.-.+-.+..+|+++|+.|++....+ + .++. ..+.+
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d~v~lv~Fs~~~~~~-~--------~~~~--~~l~~ 428 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEPDALTMGFAEQFRPL-G--------ITPR--DTLES 428 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSSEEEEEEEBSSEEEC-C--------CCTT--CCHHH
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCCceEEEEECCcceEc-C--------CCcc--hhHHH
Confidence 467899999999999986 2 2333333332234446688999999999854321 1 1111 22334
Q ss_pred HHhhhc-CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC----chHHHHHHhhhcccCCCCCCCeEE
Q psy10004 154 GVEMIG-DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE----NYKEVFEEFNWRGQNDSTLWPVRV 228 (354)
Q Consensus 154 ~i~~l~-~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~----~~~~i~~~~~~~~~~~~~~~~v~I 228 (354)
.++.+. .++|+|++..+|..|.+.. ....+|||+|||..+ .+.+.++.++. .. ..++++
T Consensus 429 ~l~~l~~~~~ggTdi~~~l~~a~~~~-----------~~~~~vIliTD~~~~~g~~~~~~al~~~r~-~~----~~~~kl 492 (535)
T 2nvo_A 429 AMQKAQSVSFGGTDCAQPILWAAQER-----------LDVDTFVVYTDNETWAGQVHPTVALDQYAQ-KM----GRAPKL 492 (535)
T ss_dssp HHHHTCCSSBCCCCTTHHHHHHHHTT-----------CCCSEEEEEESSCCCCCSSCHHHHHHHHHH-HH----SCCCEE
T ss_pred HHHHHhhCCCCCccHHHHHHHHHHhc-----------CCCCEEEEEeCCCccCCCCCHHHHHHHHHH-hh----CCCCeE
Confidence 444441 2269999999998874421 123689999999765 34556666652 21 246999
Q ss_pred EEEEeCCC
Q psy10004 229 FSYLVGKE 236 (354)
Q Consensus 229 ftigiG~~ 236 (354)
++||+|..
T Consensus 493 v~i~l~~~ 500 (535)
T 2nvo_A 493 IVVGLTAT 500 (535)
T ss_dssp EEEETTCS
T ss_pred EEEeccCC
Confidence 99999874
No 30
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=98.99 E-value=2.5e-09 Score=108.83 Aligned_cols=141 Identities=13% Similarity=0.126 Sum_probs=94.3
Q ss_pred Cce-EEEEEeCCCCCCc-------chHHHHHHHHHHHHHHc---CCCCeEEEEEeecccccccccccc-----cccccCh
Q psy10004 82 PKD-MVILLDNSGSMMG-------QRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFAD-----ILVQANL 145 (354)
Q Consensus 82 p~d-vvillD~SgSM~g-------~~~~~ak~a~~~ll~~L---~~~d~v~vi~Fs~~~~~~~~c~~~-----~lv~~~~ 145 (354)
.++ ++|+||.|+||.. ++++.+++.+..++... +++|+||||.|++.....-..+.. .+...+.
T Consensus 34 ~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~ 113 (609)
T 1jey_A 34 GRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGA 113 (609)
T ss_dssp CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCH
T ss_pred CceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCH
Confidence 345 9999999999974 47999999999999863 689999999999987321000110 2222334
Q ss_pred hhHHHHHHHHh--------h-hcCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCch---------H
Q psy10004 146 ANVRELKMGVE--------M-IGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENY---------K 207 (354)
Q Consensus 146 ~n~~~~~~~i~--------~-l~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~---------~ 207 (354)
..++.+...+. . + ..+.+|++..||..|.++|..... ....+.|||||||..... .
T Consensus 114 ~~ik~l~~l~~~~~~~~~~~~~-g~~~~t~l~daL~~a~~~f~~~~~-----k~~~k~IiL~TDg~~p~~~~~~~~~~~~ 187 (609)
T 1jey_A 114 KRILELDQFKGQQGQKRFQDMM-GHGSDYSLSEVLWVCANLFSDVQF-----KMSHKRIMLFTNEDNPHGNDSAKASRAR 187 (609)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHH-CCSCCCCHHHHHHHHHHHHHTCSS-----CEEEEEEEEEESCSCTTTTCHHHHHHHH
T ss_pred HHHHHHHHHhhcccchhhhhhc-CCCCCCCHHHHHHHHHHHHHhhch-----hhcCCEEEEEcCCCCCCCCchHHHHHHH
Confidence 43444443322 1 2 234689999999999999975411 123689999999986522 1
Q ss_pred HHHHHhhhcccCCCCCCCeEEEEEEeCCC
Q psy10004 208 EVFEEFNWRGQNDSTLWPVRVFSYLVGKE 236 (354)
Q Consensus 208 ~i~~~~~~~~~~~~~~~~v~IftigiG~~ 236 (354)
.+.+.++ ..+|+|++||+|..
T Consensus 188 ~~a~~l~--------~~gI~i~~igig~~ 208 (609)
T 1jey_A 188 TKAGDLR--------DTGIFLDLMHLKKP 208 (609)
T ss_dssp HHHHHHH--------HHTEEEEEEEBCCT
T ss_pred HHHHHHH--------hcCcEEEEEecCCC
Confidence 2222222 24799999999975
No 31
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.40 E-value=5.4e-07 Score=79.03 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=76.4
Q ss_pred CCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHc---CCCCeEEEEEeecccccccccccccccccChhhHHHHHHHHhh
Q psy10004 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADILVQANLANVRELKMGVEM 157 (354)
Q Consensus 81 ~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L---~~~d~v~vi~Fs~~~~~~~~c~~~~lv~~~~~n~~~~~~~i~~ 157 (354)
.|.|++||+|.|+||.+. ++.+|+.+..+++.| ..+-|+++..|.+.. |+ .....+.+...+.+.|.+
T Consensus 2 ~pvDl~fl~D~S~SM~~d-i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~------~~--~~l~lT~d~~~F~~~v~~ 72 (212)
T 2iue_A 2 NSVDLYFLMGLSGSAQGH-LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT------FQ--HILKLTADSSQFQRELRK 72 (212)
T ss_dssp CCEEEEEEEECCGGGTTT-HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC------EE--EEEEEESCHHHHHHHHHT
T ss_pred CceEEEEEEeCCCcchhH-HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc------ce--ecCCcCCCHHHHHHHHhh
Confidence 589999999999999854 788888888876665 567799999998872 32 122245678889999999
Q ss_pred hcCCCCCCcH----HHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCc
Q psy10004 158 IGDANNIANF----TVALTRAFNILENARNDKKTGADCNQAIMVVTDGASEN 205 (354)
Q Consensus 158 l~~~~G~T~~----~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~ 205 (354)
+ ...|+-+. ..||..|.... +....+ . ..++|||+||+.+..
T Consensus 73 ~-~vsg~~D~PE~g~dal~qa~~c~-~~i~Wr---~-a~rllvl~TDa~~H~ 118 (212)
T 2iue_A 73 Q-LVSGKLATPKGQLDAVVQVAICL-GEIGWR---N-GTRFLVLVTDNDFHL 118 (212)
T ss_dssp C-CCCCCSSSSBCHHHHHHHHHHCH-HHHTCC---S-SEEEEEEECSSCBCC
T ss_pred c-cccCCCCCCchHHHHHHHHHHhh-hhcccC---C-ccEEEEEECcCCccc
Confidence 8 77775433 34444443211 111122 2 679999999998753
No 32
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=98.35 E-value=1.2e-05 Score=83.78 Aligned_cols=180 Identities=13% Similarity=0.124 Sum_probs=115.4
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccccc--------------------cc
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFA--------------------DI 139 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~--------------------~~ 139 (354)
+.|--++||||+|.+ ...++.+++++...|+.|.++.+|++|+|++.++..--... ..
T Consensus 130 p~pp~~vFvIDvS~~--a~~l~~l~~si~~~L~~Lp~~~~VGlITf~~~v~~y~l~~~~~~~~~vf~G~k~~~~~q~~~m 207 (769)
T 2nut_A 130 QMPLIFLYVVDTCME--DEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEM 207 (769)
T ss_dssp CCCCEEEEEEECCSC--HHHHHHHHHHHHHHHTTSCTTCEEEEEEESSEEEEEESSCCSSCEEEEEETTSCCCSHHHHHH
T ss_pred CCCCEEEEEEECCcc--HHHHHHHHHHHHHHHHhCCCCceEEEEEeCCEEEEEeCCCCCCccceeecCCccccHHHHHHH
Confidence 456789999999987 45688999999999999999999999999988755210000 00
Q ss_pred cccc-------------------------ChhhHHHHHHHHhhhcCC---------CCCCcHHHHHHHHHHHHHhccccC
Q psy10004 140 LVQA-------------------------NLANVRELKMGVEMIGDA---------NNIANFTVALTRAFNILENARNDK 185 (354)
Q Consensus 140 lv~~-------------------------~~~n~~~~~~~i~~l~~~---------~G~T~~~~aL~~A~~~l~~~~~~~ 185 (354)
++.. -.+.+..+...|+.+ .. .+.+.++.||..|..+|.....
T Consensus 208 l~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~~lLe~L-~~~~~~~~~~~~~~~a~G~Al~~A~~lL~~~~~-- 284 (769)
T 2nut_A 208 LGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGEL-QRDPWPVPQGKRPLRSSGVALSIAVGLLECTFP-- 284 (769)
T ss_dssp HC-------------------CCCSSSEEHHHHHHHHHHHHHHC-CCCSSCCCTTBCCCCCHHHHHHHHHHHHHHHSC--
T ss_pred hCCCCcccccccccccccCCCcccceeeeHHHHHHHHHHHHHhc-ccccccccCCCCCccchHHHHHHHHHHHhhccc--
Confidence 1000 113344566677777 43 4567899999999999985311
Q ss_pred CCCCCCcceEEEeccCCCCch----------------HH-----------H---HHHhhhcccCCCCCCCeEEEEEEeCC
Q psy10004 186 KTGADCNQAIMVVTDGASENY----------------KE-----------V---FEEFNWRGQNDSTLWPVRVFSYLVGK 235 (354)
Q Consensus 186 ~~~~~~~~~IillTDG~~~~~----------------~~-----------i---~~~~~~~~~~~~~~~~v~IftigiG~ 235 (354)
++.--|++++.|.++.+ .+ . .+.+. ... ...++.|..|.++.
T Consensus 285 ----~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la-~~~---~~~gi~VDlF~~~~ 356 (769)
T 2nut_A 285 ----NTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALA-NRA---ATTGHVIDIYACAL 356 (769)
T ss_dssp ----SSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHH-HHH---HHHTCEEEEEEECS
T ss_pred ----CCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHH-HHH---HHCCeEEEEEeccC
Confidence 11234777777876510 00 0 01110 000 12357777777776
Q ss_pred CCCCHHHHHHHHhcCCcEEEEeCCh--hHHHHHHHHHHH
Q psy10004 236 EVADYRDVKWMACANKGYYVHLSTL--AEVRDQILSYVP 272 (354)
Q Consensus 236 ~~~~~~~L~~iA~~~~G~~~~i~~~--~~~~~~l~~~~~ 272 (354)
+..+...|+.++..+||..++.++. ....+.+.+++.
T Consensus 357 ~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~ 395 (769)
T 2nut_A 357 DQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769)
T ss_dssp SCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred CccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHh
Confidence 6568999999999999977777654 334444544443
No 33
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=98.32 E-value=2.8e-06 Score=87.04 Aligned_cols=187 Identities=15% Similarity=0.053 Sum_probs=114.0
Q ss_pred eccCCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHH---cCCCCeEEEEEeecccccc-----------ccc-------
Q psy10004 77 NAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDT---LGNNDYVNVLQFTSVCKEV-----------VPC------- 135 (354)
Q Consensus 77 ~a~~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~---L~~~d~v~vi~Fs~~~~~~-----------~~c------- 135 (354)
.+...|.|++||+|.|+||.. .++.+|.....|++. +..+-|+++..|.+.+... -||
T Consensus 106 ~~~~~pvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c 184 (690)
T 3fcs_B 106 QVEDYPVDIYYLMDLSYSMKD-DLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTC 184 (690)
T ss_dssp CCBTCCEEEEEEEECSGGGHH-HHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCC
T ss_pred ccCCCCccEEEEecCCcchHH-HHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCC
Confidence 455689999999999999974 466666666666544 4678899999999965321 122
Q ss_pred ---ccccccccChhhHHHHHHHHhhhcCCCCCCcH----HHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCc---
Q psy10004 136 ---FADILVQANLANVRELKMGVEMIGDANNIANF----TVALTRAFNILENARNDKKTGADCNQAIMVVTDGASEN--- 205 (354)
Q Consensus 136 ---~~~~lv~~~~~n~~~~~~~i~~l~~~~G~T~~----~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~--- 205 (354)
|.-..+.....+...+.+.|.++ ...|+-+. ..||..|.-- .+....+ .+..++|||+||..+..
T Consensus 185 ~~~f~f~~~l~lt~~~~~f~~~v~~~-~isgn~D~PE~g~dAl~qa~~c-~~~igWr---~~a~rllv~~TDa~~H~agD 259 (690)
T 3fcs_B 185 LPMFGYKHVLTLTDQVTRFNEEVKKQ-SVSRNRDAPEGGFDAIMQATVC-DEKIGWR---NDASHLLVFTTDAKTHIALD 259 (690)
T ss_dssp CCCCSEEEEEEEESCHHHHHHHHTTC-CCCCCSSSSBCHHHHHHHHHHC-HHHHTCC---SSSEEEEEEEESSCBCCTTG
T ss_pred CCCccceeecccCCCHHHHHHHhhce-eccCCCCCCchHHHHHHHHhhc-ccccCCC---CCceEEEEEECCCccccCCC
Confidence 11111233457789999999988 77766433 3444444310 1111222 35679999999986430
Q ss_pred --------------------------------hHHHHHHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhc-CCc
Q psy10004 206 --------------------------------YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACA-NKG 252 (354)
Q Consensus 206 --------------------------------~~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~-~~G 252 (354)
..++.+++. + ..-..||++--+ ....-+.++.. +++
T Consensus 260 g~l~gi~~pnd~~chl~~~~~y~~s~~~DypSi~ql~~~l~--~-----~~i~~ifavt~~----~~~~y~~l~~~i~~s 328 (690)
T 3fcs_B 260 GRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLS--Q-----KNINLIFAVTEN----VVNLYQNYSELIPGT 328 (690)
T ss_dssp GGGGTCCSCCCCCCCBCTTCBBGGGGTSCCCCHHHHHHHHH--H-----TTCEEEEEEEGG----GHHHHHHHHHHSTTC
T ss_pred ccccceecCCCcceeecCCCccccccccCCCCHHHHHHHHH--H-----cCCeEEEEEeCC----chhhHHHHHhhcCCc
Confidence 133444443 1 122446665322 23344555544 445
Q ss_pred EEEEe-CChhHHHHHHHHHHHHhccchhc
Q psy10004 253 YYVHL-STLAEVRDQILSYVPVMARPLVL 280 (354)
Q Consensus 253 ~~~~i-~~~~~~~~~l~~~~~~l~~pl~~ 280 (354)
....+ .+...+.+.|.+.|..|+.-+.+
T Consensus 329 ~v~~l~~dSsni~~li~~~y~~i~s~v~l 357 (690)
T 3fcs_B 329 TVGVLSMDSSNVLQLIVDAYGKIRSKVEL 357 (690)
T ss_dssp EEEEECTTCTTHHHHHHHHHHHHTTCEEE
T ss_pred eeeeeccccHHHHHHHHHHHHhhhcceee
Confidence 44444 44567888899999999877766
No 34
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=98.27 E-value=3.5e-06 Score=74.99 Aligned_cols=67 Identities=19% Similarity=0.197 Sum_probs=48.8
Q ss_pred CcceEEEeccCCCC---chHHHHHHhhhcccCCCCCCCeEEEEEEeCCC----CCCHHHHHHHHhcCCcEEEEeCChhHH
Q psy10004 191 CNQAIMVVTDGASE---NYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKE----VADYRDVKWMACANKGYYVHLSTLAEV 263 (354)
Q Consensus 191 ~~~~IillTDG~~~---~~~~i~~~~~~~~~~~~~~~~v~IftigiG~~----~~~~~~L~~iA~~~~G~~~~i~~~~~~ 263 (354)
..++|||||||..+ ++.+..+.+. ..+|+||+||+|.. ..+...|+.||..++|.|+.+.. .++
T Consensus 9 ~~k~iillTDG~~~~g~~p~~aa~~a~--------~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~~-~~l 79 (242)
T 3rag_A 9 TIRQILVITDGCSNIGPDPVEAARRAH--------RHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQP-ADI 79 (242)
T ss_dssp CEEEEEEEESSCCCSSSCHHHHHHHHH--------HTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEECG-GGH
T ss_pred CccEEEEEccCCCCCCCCHHHHHHHHH--------HCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEeeH-HHH
Confidence 45899999999976 4444444332 24799999999753 12468999999999999999855 554
Q ss_pred HHH
Q psy10004 264 RDQ 266 (354)
Q Consensus 264 ~~~ 266 (354)
.+.
T Consensus 80 ~~~ 82 (242)
T 3rag_A 80 SAT 82 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 35
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=98.02 E-value=9.4e-05 Score=77.39 Aligned_cols=165 Identities=15% Similarity=0.151 Sum_probs=102.9
Q ss_pred CCCceEEEEEeCCCCCCcch-HHHHHHHHHHHHHHcCC---CCeEEEEEeeccccccc--ccc-----------------
Q psy10004 80 ASPKDMVILLDNSGSMMGQR-REIARHVINNLLDTLGN---NDYVNVLQFTSVCKEVV--PCF----------------- 136 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~-~~~ak~a~~~ll~~L~~---~d~v~vi~Fs~~~~~~~--~c~----------------- 136 (354)
+.|--++||||+|.+.-... ++.+++++...|+.|.+ +.+|++|+|++.++..- +..
T Consensus 185 p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~d 264 (810)
T 1pcx_A 185 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 264 (810)
T ss_dssp CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCC
T ss_pred CCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccc
Confidence 46778999999998763333 67888899998988876 57999999999875431 000
Q ss_pred ---------cccccccChhhHHHHHHHHhhhc-----CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCC
Q psy10004 137 ---------ADILVQANLANVRELKMGVEMIG-----DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGA 202 (354)
Q Consensus 137 ---------~~~lv~~~~~n~~~~~~~i~~l~-----~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~ 202 (354)
.+.++. -.+.+..+...|+.+. ...+.+.++.||..|..+|... .--|++++.|.
T Consensus 265 l~d~f~P~~~~~Lv~-l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~~----------GGrI~~F~sg~ 333 (810)
T 1pcx_A 265 LEEPFLPRPNSMVVS-LKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV----------GGKIIVVSGTL 333 (810)
T ss_dssp TTCC-----TTTSEE-TTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTTT----------CEEEEEEESSC
T ss_pred cccccCCCccccccc-HHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhc----------CCEEEEEecCC
Confidence 000111 1123344444444441 2356778999999999999742 12488888887
Q ss_pred CCch------H----------H---HH-------HHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhcCCcEEEE
Q psy10004 203 SENY------K----------E---VF-------EEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVH 256 (354)
Q Consensus 203 ~~~~------~----------~---i~-------~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~~~G~~~~ 256 (354)
++.+ . + .+ +.+. ... ...++.|-.|.++.+..+...|..++..+||..++
T Consensus 334 pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la-~~~---~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~ 409 (810)
T 1pcx_A 334 PNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFT-IDC---SKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHF 409 (810)
T ss_dssp CCSSTTCCCC--------------------CCHHHHHH-HHH---HHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEE
T ss_pred CCCCCCcccccccccccCcccchhhhcccchHHHHHHH-HHH---HHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEE
Confidence 6521 0 0 00 0000 000 12356666666665555899999999999996555
Q ss_pred eCC
Q psy10004 257 LST 259 (354)
Q Consensus 257 i~~ 259 (354)
.++
T Consensus 410 y~~ 412 (810)
T 1pcx_A 410 YPG 412 (810)
T ss_dssp EET
T ss_pred cCC
Confidence 543
No 36
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=98.01 E-value=0.00018 Score=74.84 Aligned_cols=183 Identities=12% Similarity=0.113 Sum_probs=112.6
Q ss_pred CCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcCCCCeEEEEEeeccccccccccc--------------------cc
Q psy10004 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFA--------------------DI 139 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~~~d~v~vi~Fs~~~~~~~~c~~--------------------~~ 139 (354)
+.|--++||||+|.+. ..++.+++++...|+.|.++.+|++|+|++.++..--... ..
T Consensus 119 ~~pp~~vFvIDvs~~~--~~l~~l~~sl~~~L~~Lp~~~~VGlITf~~~V~~y~l~~~~~~~~~V~~g~k~~~~~q~~~~ 196 (768)
T 1m2o_A 119 TVPPIFFFVVDLTSET--ENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEM 196 (768)
T ss_dssp CSCCEEEEEEECCSCH--HHHHHHHHHHHHHHHTSCTTCEEEEEEESSEEEECCCSSSSSEEEEEEETTSCCCHHHHHHH
T ss_pred CCCCEEEEEEECCcCH--HHHHHHHHHHHHHHHhCCCCCEEEEEEECCEEEEEECCCCCCcceeeecCCccccHHHHHHH
Confidence 4577889999999875 4688999999999999999999999999987654210000 00
Q ss_pred c------------------------------cccChhhHHHHHHHHhhhcCC---------CCCCcHHHHHHHHHHHHHh
Q psy10004 140 L------------------------------VQANLANVRELKMGVEMIGDA---------NNIANFTVALTRAFNILEN 180 (354)
Q Consensus 140 l------------------------------v~~~~~n~~~~~~~i~~l~~~---------~G~T~~~~aL~~A~~~l~~ 180 (354)
+ ...-.+.+..+...|+.+ .. ...+.++.||..|..+|..
T Consensus 197 l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~~i~~lL~~L-~~~~~~~~~~~~~~~~~G~Al~~A~~ll~~ 275 (768)
T 1m2o_A 197 LTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENL-SPDQWSVPAGHRPLRATGSALNIASLLLQG 275 (768)
T ss_dssp HHSCCCC---------------CCSSSGGGGSEEHHHHHHHHHHHHHTC-CCSCSCCCTTBCCCCCHHHHHHHHHHHHHH
T ss_pred HhhccccccCCccccccccccccccCCccceeeeHHHHHHHHHHHHHhc-cccccccCCCCCCcccHHHHHHHHHHHHhh
Confidence 0 000012344566677776 33 2345799999999999975
Q ss_pred ccccCCCCCCCcceEEEeccCCCCch----------------HHH-----------HHHhhhcccCCCCCCCeEEEEEEe
Q psy10004 181 ARNDKKTGADCNQAIMVVTDGASENY----------------KEV-----------FEEFNWRGQNDSTLWPVRVFSYLV 233 (354)
Q Consensus 181 ~~~~~~~~~~~~~~IillTDG~~~~~----------------~~i-----------~~~~~~~~~~~~~~~~v~Iftigi 233 (354)
... +..--|++++.|.++.+ .++ .+-|+ ..+.+....++.|-.|.+
T Consensus 276 ~~~------~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~-~la~~~~~~gi~VDlF~~ 348 (768)
T 1m2o_A 276 CYK------NIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYN-QIAQRVAANGHTVDIFAG 348 (768)
T ss_dssp HCT------TSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHH-HHHHHHHHHTCEEEEEEE
T ss_pred ccC------CCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHH-HHHHHHHHCCeEEEEEEc
Confidence 311 11234888888876510 000 00010 000000123566666666
Q ss_pred CCCCCCHHHHHHHHhcCCcEEEEeCCh--hHHHHHHHHHHH
Q psy10004 234 GKEVADYRDVKWMACANKGYYVHLSTL--AEVRDQILSYVP 272 (354)
Q Consensus 234 G~~~~~~~~L~~iA~~~~G~~~~i~~~--~~~~~~l~~~~~ 272 (354)
+.+..+...|..++..+||..++.++. ..+.+.+.+++.
T Consensus 349 ~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~ 389 (768)
T 1m2o_A 349 CYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFA 389 (768)
T ss_dssp CSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTC
T ss_pred cCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHh
Confidence 655558999999999999966666554 334444544444
No 37
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.98 E-value=1e-05 Score=78.68 Aligned_cols=188 Identities=14% Similarity=0.055 Sum_probs=114.5
Q ss_pred eeccCCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeeccccc-----------cccccc----
Q psy10004 76 INAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKE-----------VVPCFA---- 137 (354)
Q Consensus 76 ~~a~~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~-----------~~~c~~---- 137 (354)
.++...|.|++||+|.|+||. ..++.+|.....|++.|. .+-|+++..|-+++.. .-||..
T Consensus 105 ~~~~~ypvDLy~LmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~ 183 (472)
T 3t3p_B 105 RQVEDYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTT 183 (472)
T ss_dssp ECCSSCCEEEEEEEECSGGGH-HHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSC
T ss_pred ecCCCCCceEEEEEccCcchH-HHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccC
Confidence 356678999999999999997 457777777777776654 6679999999987421 123311
Q ss_pred ------ccccccChhhHHHHHHHHhhhcCCCCCCcH----HHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCc--
Q psy10004 138 ------DILVQANLANVRELKMGVEMIGDANNIANF----TVALTRAFNILENARNDKKTGADCNQAIMVVTDGASEN-- 205 (354)
Q Consensus 138 ------~~lv~~~~~n~~~~~~~i~~l~~~~G~T~~----~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~-- 205 (354)
-..+...+.+...+.+.|.+. ...|+-+. ..||..|.-- .+....+ ....++|||+||..+..
T Consensus 184 c~p~f~fr~~l~LT~d~~~F~~~V~~~-~iSGn~D~PEgg~dAl~qaavC-~~~igWR---~~a~rllV~~TDa~~H~ag 258 (472)
T 3t3p_B 184 CLPMFGYKHVLTLTDQVTRFNEEVKKQ-SVSRNRDAPEGGFDAIMQATVC-DEKIGWR---NDASHLLVFTTDAKTHIAL 258 (472)
T ss_dssp CCCCCSEEEEEEEESCHHHHHHHHHHC-CCCCCSSSSBCHHHHHHHHHHC-HHHHTCC---SSSEEEEEEEESSCBCCTT
T ss_pred CCCCcceeEeeccCCCHHHHHHHHhhc-cccCCCCCCchHHHHHHHHhcc-hhhcCCC---CCceEEEEEECCCCcCcCC
Confidence 011223456789999999998 77776543 3344333310 1112222 35678999999986420
Q ss_pred ---------------------------------hHHHHHHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhcCCc
Q psy10004 206 ---------------------------------YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKG 252 (354)
Q Consensus 206 ---------------------------------~~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~~~G 252 (354)
...+.+++. + ++-..||++-= . ....-+.++..-.|
T Consensus 259 DgkL~GIv~pnDg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~--e-----~nI~~IFAVt~--~--~~~~Y~~L~~~ip~ 327 (472)
T 3t3p_B 259 DGRLAGIVQPNDGQCHVGSDNHYSASTTMDYPSLGLMTEKLS--Q-----KNINLIFAVTE--N--VVNLYQNYSELIPG 327 (472)
T ss_dssp GGGGGTCCCCCCCCCCBCTTCBBTTTTTSCCCCHHHHHHHHH--H-----TTCEEEEEECG--G--GHHHHHHHHHTSTT
T ss_pred CccccceecCCCCceEECCCCcccccccCCCCCHHHHHHHHH--h-----cCccEEEEEec--c--chhHHHHHHHhCCC
Confidence 023333332 1 12345776621 1 23444666655434
Q ss_pred -EEEEe-CChhHHHHHHHHHHHHhccchhc
Q psy10004 253 -YYVHL-STLAEVRDQILSYVPVMARPLVL 280 (354)
Q Consensus 253 -~~~~i-~~~~~~~~~l~~~~~~l~~pl~~ 280 (354)
....+ .+...+-+-|.+-|+.|++-+.+
T Consensus 328 s~vg~L~~dSsNiv~LI~~aY~~i~s~V~l 357 (472)
T 3t3p_B 328 TTVGVLSMDSSNVLQLIVDAYGKIRSKVEL 357 (472)
T ss_dssp CEEEECCTTSTTHHHHHHHHHHHHTTCEEE
T ss_pred ceeeeccccchhHHHHHHHHHHHhheEEEE
Confidence 44444 44567888888888888877666
No 38
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.81 E-value=9.9e-06 Score=82.85 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=76.2
Q ss_pred eccCCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHH---cCCCCeEEEEEeecccccc----------ccc--------
Q psy10004 77 NAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDT---LGNNDYVNVLQFTSVCKEV----------VPC-------- 135 (354)
Q Consensus 77 ~a~~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~---L~~~d~v~vi~Fs~~~~~~----------~~c-------- 135 (354)
.+...|.|++||+|.|+||.. .++.+|.....|++. +..+-|+++..|.+++... -||
T Consensus 99 ~~~~ypvDly~LmD~S~SM~d-di~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~ 177 (687)
T 3k6s_B 99 RAKGYPIDLYYLMDLSYSMLD-DLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQ 177 (687)
T ss_dssp CCCCCCCEEEEEEECSSTTHH-HHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCC
T ss_pred ccCCCceeEEEEEcCCcchHH-HHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcC
Confidence 455689999999999999974 466666655555544 4577899999999865321 122
Q ss_pred --ccccccccChhhHHHHHHHHhhhcCCCCCCcH----HHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC
Q psy10004 136 --FADILVQANLANVRELKMGVEMIGDANNIANF----TVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE 204 (354)
Q Consensus 136 --~~~~lv~~~~~n~~~~~~~i~~l~~~~G~T~~----~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~ 204 (354)
|.-..+.....+...+.+.|... ...|+-+. ..||..|.-- .+....+ . ..++|||+||..+.
T Consensus 178 ~~f~f~~~l~lt~~~~~F~~~v~~~-~isgn~D~PE~g~dAl~qa~vc-~~~igWr---~-a~rllV~~TDa~~H 246 (687)
T 3k6s_B 178 PPFAFRHVLKLTNNSNQFQTEVGKQ-LISGNLDAPEGGLDAMMQVAAC-PEEIGWR---N-VTRLLVFATDDGFH 246 (687)
T ss_dssp CCCSCEEEEEEESCSHHHHHHHHTS-CCCCCSSSSCCHHHHHHHHTTC-HHHHCCC---S-SCCEEEEECSSCCC
T ss_pred CcccceeecccCCCHHHHHHHHhhc-cccCCCCCCchHHHHHHHHhhc-ccccCCc---c-ceEEEEEECCCccc
Confidence 11011223456778899999988 77766443 3333333200 1122222 2 66899999998643
No 39
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=97.77 E-value=3.3e-05 Score=75.45 Aligned_cols=187 Identities=16% Similarity=0.117 Sum_probs=114.2
Q ss_pred eeeccCCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeecccccc----------ccccc----
Q psy10004 75 YINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEV----------VPCFA---- 137 (354)
Q Consensus 75 y~~a~~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~~----------~~c~~---- 137 (354)
|.++...|.|+++|+|.|+||. ..++.+|.....|++.|. .+-|+++..|-+++... -||..
T Consensus 125 ~~~~~~yPVDLyyLmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~ 203 (503)
T 3v4v_B 125 FLRAEGYPVDLYYLMDLSYSMK-DDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLER 203 (503)
T ss_dssp EECCSSCCEEEEEEEECSGGGH-HHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSC
T ss_pred EEccCCCceeEEEEEecCcchh-hHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCC
Confidence 3456678999999999999997 457778887777777664 66799999998874211 13321
Q ss_pred ------ccccccChhhHHHHHHHHhhhcCCCCCCcH----HHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC---
Q psy10004 138 ------DILVQANLANVRELKMGVEMIGDANNIANF----TVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE--- 204 (354)
Q Consensus 138 ------~~lv~~~~~n~~~~~~~i~~l~~~~G~T~~----~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~--- 204 (354)
-..+...+.+...+.+.|.+. ...|+-+. ..||-.|.-- .+..+.+ . ..++|||+||..+.
T Consensus 204 c~p~f~fr~~l~LT~d~~~F~~~V~~~-~iSGnlD~PEggfDAlmQaavC-~~~IgWR---~-a~rllV~~TDA~fH~ag 277 (503)
T 3v4v_B 204 CQSPFSFHHVLSLTGDAQAFEREVGRQ-SVSGNLDSPEGGFDAILQAALC-QEQIGWR---N-VSRLLVFTSDDTFHTAG 277 (503)
T ss_dssp CCCCCSEEEEEEEESCSHHHHHHHTTC-CCCCCSSSSBCHHHHHHHHHHC-HHHHTCC---S-SEEEEEEEESSCBCCTT
T ss_pred CCCCcceEEEEEecCCHHHHHHHHhhc-CccCCCCCCchHHHHHHHHhhc-ccccCCC---c-ceEEEEEECCCCcCcCC
Confidence 011223346788999999988 77766543 3333333210 1122232 1 45899999998632
Q ss_pred -----------c---------------------hHHHHHHhhhcccCCCCCCC-eEEEEEEeCCCCCCHHHHHHHHhcC-
Q psy10004 205 -----------N---------------------YKEVFEEFNWRGQNDSTLWP-VRVFSYLVGKEVADYRDVKWMACAN- 250 (354)
Q Consensus 205 -----------~---------------------~~~i~~~~~~~~~~~~~~~~-v~IftigiG~~~~~~~~L~~iA~~~- 250 (354)
+ ...+.+++. + .+ ..||++ -.. ....-+.++..=
T Consensus 278 DgkLaGIv~pNDg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~--e------nnI~~IFAV--t~~--~~~~Y~~L~~~ip 345 (503)
T 3v4v_B 278 DGKLGGIFMPSDGHCHLDSNGLYSRSTEFDYPSVGQVAQALS--A------ANIQPIFAV--TSA--ALPVYQELSKLIP 345 (503)
T ss_dssp GGGTTTCCSCCCSSCCBCTTSBBGGGGGSCCCCHHHHHHHHH--H------HTEEEEEEE--CSS--SHHHHHHHHTTST
T ss_pred CccccceecCCCCCeEECCCCccccccccCCCCHHHHHHHHH--h------cCCeEEEEE--ccc--chhHHHHHHHhCC
Confidence 0 023333332 1 12 346655 222 345556676554
Q ss_pred CcEEEEeC-ChhHHHHHHHHHHHHhccchhc
Q psy10004 251 KGYYVHLS-TLAEVRDQILSYVPVMARPLVL 280 (354)
Q Consensus 251 ~G~~~~i~-~~~~~~~~l~~~~~~l~~pl~~ 280 (354)
++....+. +...+-+-|.+-|..|++-+.+
T Consensus 346 ~s~vg~Ls~dSsNiv~LI~~aY~~i~S~V~l 376 (503)
T 3v4v_B 346 KSAVGELSEDSSNVVQLIMDAYNSLSSTVTL 376 (503)
T ss_dssp TCEEEECCTTSCTHHHHHHHHHHHHHTCEEE
T ss_pred CceeeEccccchhHHHHHHHHHHHhheEEEE
Confidence 44444443 4567888888999999887766
No 40
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.72 E-value=5.2e-05 Score=73.23 Aligned_cols=186 Identities=13% Similarity=0.039 Sum_probs=114.3
Q ss_pred eccCCCceEEEEEeCCCCCCcchHHHHHHHHHHHHHHcC---CCCeEEEEEeeccccc----------cccccc------
Q psy10004 77 NAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKE----------VVPCFA------ 137 (354)
Q Consensus 77 ~a~~~p~dvvillD~SgSM~g~~~~~ak~a~~~ll~~L~---~~d~v~vi~Fs~~~~~----------~~~c~~------ 137 (354)
++...|.|+++|+|.|+||. ..++..|.....|++.|. .+-|+++..|-+++.. .-||..
T Consensus 117 ~~~~yPVDLyyLmDlS~SM~-ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~ 195 (454)
T 3vi3_B 117 RAEDYPIDLYYLMDLSYSMK-DDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTT 195 (454)
T ss_dssp CCSCCCEEEEEEEECSGGGH-HHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCC
T ss_pred cCCCCceeEEEEecCCcchh-hHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCC
Confidence 55668999999999999997 457777877777777665 6679999999986421 123321
Q ss_pred ---ccccccChhhHHHHHHHHhhhcCCCCCCcH----HHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCc-----
Q psy10004 138 ---DILVQANLANVRELKMGVEMIGDANNIANF----TVALTRAFNILENARNDKKTGADCNQAIMVVTDGASEN----- 205 (354)
Q Consensus 138 ---~~lv~~~~~n~~~~~~~i~~l~~~~G~T~~----~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~----- 205 (354)
-..+...+.+...+.++|.+. ...|+-+. ..||-.|.-- .+..+.+ . +.++|||+||..+..
T Consensus 196 ~f~fr~~l~LT~d~~~F~~~V~~~-~isGn~D~PEgg~DAl~Qaavc-~~~igWR---~-a~rllV~~TDa~fH~agDgk 269 (454)
T 3vi3_B 196 PFSYKNVLSLTNKGEVFNELVGKQ-RISGNLDSPEGGFDAIMQVAVC-GSLIGWR---N-VTRLLVFSTDAGFHFAGDGK 269 (454)
T ss_dssp CCSEEEEEEEESCHHHHHHHHTTC-CCCCCSSSSBCHHHHHHHHHHC-HHHHTCC---S-SEEEEEEEESSCBCCTTTTG
T ss_pred CcceeeeeecCCCHHHHHHHHhhc-cccCCCcCCchhHHHHHHHhcc-ccccCCc---c-ceEEEEEECCCCcCcCCCcc
Confidence 011233446789999999998 77776543 2333333210 1112222 2 678999999986420
Q ss_pred -----------------------------hHHHHHHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhcCC-cEEE
Q psy10004 206 -----------------------------YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANK-GYYV 255 (354)
Q Consensus 206 -----------------------------~~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~~~-G~~~ 255 (354)
...+.+++. + ++=..||++-=. -...-+.++..=. +...
T Consensus 270 L~GIv~PNDg~CHL~~~~Yt~s~~~DYPSv~ql~~~l~--e-----~nI~~IFAVt~~----~~~~Y~~L~~~ip~s~vg 338 (454)
T 3vi3_B 270 LGGIVLPNDGQCHLENNMYTMSHYYDYPSIAHLVQKLS--E-----NNIQTIFAVTEE----FQPVYKELKNLIPKSAVG 338 (454)
T ss_dssp GGTCCSCCCCCCCEETTEECCTTTSCCCCHHHHHHHHH--H-----TTEEEEEEEEGG----GHHHHHHHHHHSTTEEEE
T ss_pred ccceecCCCCccEeCCCcccccccCCCCCHHHHHHHHH--h-----cCCcEEEEEcCc----cchHHHHHHHhCCCceee
Confidence 123444432 1 112447776321 2334466665443 4444
Q ss_pred Ee-CChhHHHHHHHHHHHHhccchhc
Q psy10004 256 HL-STLAEVRDQILSYVPVMARPLVL 280 (354)
Q Consensus 256 ~i-~~~~~~~~~l~~~~~~l~~pl~~ 280 (354)
.+ .+...+-+-|.+-++.|++-+.+
T Consensus 339 ~Ls~dSsNiv~LI~~aY~~i~S~V~l 364 (454)
T 3vi3_B 339 TLSANSSNVIQLIIDAYNSLSSEVIL 364 (454)
T ss_dssp EECTTCTTHHHHHHHHHHHHHTCEEE
T ss_pred EccccchhHHHHHHHHHHHhheEEEE
Confidence 44 34567888888999999887776
No 41
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=97.66 E-value=0.00052 Score=72.53 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=101.2
Q ss_pred CCCceEEEEEeCCCCCCcch-HHHHHHHHHHHHHHcCC---CCeEEEEEeeccccccc----------------------
Q psy10004 80 ASPKDMVILLDNSGSMMGQR-REIARHVINNLLDTLGN---NDYVNVLQFTSVCKEVV---------------------- 133 (354)
Q Consensus 80 ~~p~dvvillD~SgSM~g~~-~~~ak~a~~~ll~~L~~---~d~v~vi~Fs~~~~~~~---------------------- 133 (354)
+.|--++||||+|.+.-... +..+++++...|+.|.+ +.+|++|+|++.++..-
T Consensus 301 p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsd 380 (926)
T 1m2v_B 301 PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIAD 380 (926)
T ss_dssp CCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECC
T ss_pred CCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccc
Confidence 45778999999998763232 67888888888888876 57999999998875421
Q ss_pred ------ccccccccccChhhHHHHHHHHhhhc-----CCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCC
Q psy10004 134 ------PCFADILVQANLANVRELKMGVEMIG-----DANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGA 202 (354)
Q Consensus 134 ------~c~~~~lv~~~~~n~~~~~~~i~~l~-----~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~ 202 (354)
|+-.+.++. -.+.+..+...|+.+. .....+.++.||..|+.+|... .--|++++.|.
T Consensus 381 l~d~f~P~~~~~Lv~-l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~~----------GGrI~~F~sg~ 449 (926)
T 1m2v_B 381 LEEPFLPRPNSMVVS-LKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGV----------GGKIIVVSGTL 449 (926)
T ss_dssp CSSCCCSCSSSSSEE-TTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTTT----------CEEEEEEESSC
T ss_pred cccccCCCccccccc-HHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHhh----------CCEEEEEecCC
Confidence 000111111 1233444445555441 2345678999999999999742 12478888887
Q ss_pred CCch----------------HHHH----------HHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhcCCcEEEE
Q psy10004 203 SENY----------------KEVF----------EEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVH 256 (354)
Q Consensus 203 ~~~~----------------~~i~----------~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~~~G~~~~ 256 (354)
++.+ ++.. +.+.. .. ...++.|-.|.++.+..+...|..++..+||..++
T Consensus 450 Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~-~~---~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~ 525 (926)
T 1m2v_B 450 PNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTI-DC---SKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHF 525 (926)
T ss_dssp CCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHH-HH---HHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEE
T ss_pred CCCCCCcccccccccccCcccchhhhccchHHHHHHHHH-HH---HHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEE
Confidence 6511 0110 11100 00 11345665555555545899999999999996555
Q ss_pred eCC
Q psy10004 257 LST 259 (354)
Q Consensus 257 i~~ 259 (354)
..+
T Consensus 526 y~~ 528 (926)
T 1m2v_B 526 YPG 528 (926)
T ss_dssp EES
T ss_pred cCC
Confidence 443
No 42
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=97.65 E-value=0.0015 Score=67.64 Aligned_cols=163 Identities=16% Similarity=0.159 Sum_probs=103.6
Q ss_pred cCCCceEEEEEeCCCC-CCcchHHHHHHHHHHHHHHcCCCC--eEEEEEeecccccc---------------------cc
Q psy10004 79 AASPKDMVILLDNSGS-MMGQRREIARHVINNLLDTLGNND--YVNVLQFTSVCKEV---------------------VP 134 (354)
Q Consensus 79 ~~~p~dvvillD~SgS-M~g~~~~~ak~a~~~ll~~L~~~d--~v~vi~Fs~~~~~~---------------------~~ 134 (354)
++.|--.+||||+|-. +...-++.+++++...|+.|.++. +||+|+|++.++.. +|
T Consensus 157 ~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~~~~~qmlvv~dl~d~f~P 236 (751)
T 3eh1_A 157 PPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNLQEGLSQPQMLIVSDIDDVFLP 236 (751)
T ss_dssp SCCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSSCCTTCEEEEEEESSSEEEEECCTTCSSCEEEEESCTTCTTSC
T ss_pred CCCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCCEEEEEECCCCcccceeeccccccccCCC
Confidence 3467889999999852 222346778889988898888766 89999999876431 12
Q ss_pred cccccccccChhhHHHHHHHHhhhc--CCC---CCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCCch---
Q psy10004 135 CFADILVQANLANVRELKMGVEMIG--DAN---NIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASENY--- 206 (354)
Q Consensus 135 c~~~~lv~~~~~n~~~~~~~i~~l~--~~~---G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~~~--- 206 (354)
...+.++. -.+.+..+...|+.+. .+. ..+.++.||..|+.+|... . --|++++.|.++.+
T Consensus 237 ~~~~~lv~-l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~~---------G-GrI~~F~sg~pt~GpG~ 305 (751)
T 3eh1_A 237 TPDSLLVN-LYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSPT---------G-GRVSVFQTQLPSLGAGL 305 (751)
T ss_dssp CGGGTSEE-TTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTTT---------C-EEEEEEECSCCCSSTTC
T ss_pred Chhhhccc-HHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhcC---------C-CEEEEEecCCCCCCCCc
Confidence 11111222 1234455555565552 122 3457899999999998642 1 23677777755411
Q ss_pred --------------------------HHHHHHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhcCCcEEEEeCCh
Q psy10004 207 --------------------------KEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTL 260 (354)
Q Consensus 207 --------------------------~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~~~G~~~~i~~~ 260 (354)
+.+..+. ...++.|-.|.++.+..+...|..++..+||..++.++.
T Consensus 306 l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~--------~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F 377 (751)
T 3eh1_A 306 LQSREDPNQRSSTKVVQHLGPATDFYKKLALDC--------SGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSF 377 (751)
T ss_dssp CCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHH--------HHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTC
T ss_pred cccccccccCCCchhhhhhcchHHHHHHHHHHH--------HhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCc
Confidence 1111111 124677777777766568999999999999977776543
No 43
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=97.58 E-value=0.0039 Score=64.86 Aligned_cols=165 Identities=13% Similarity=0.213 Sum_probs=103.4
Q ss_pred cCCCceEEEEEeCCCC-CCcchHHHHHHHHHHHHHHcCCC-------CeEEEEEeecccccc------------------
Q psy10004 79 AASPKDMVILLDNSGS-MMGQRREIARHVINNLLDTLGNN-------DYVNVLQFTSVCKEV------------------ 132 (354)
Q Consensus 79 ~~~p~dvvillD~SgS-M~g~~~~~ak~a~~~ll~~L~~~-------d~v~vi~Fs~~~~~~------------------ 132 (354)
++.|--.+||||+|-. +...-+..++++++..|+.|.++ .+||+|+|++.++..
T Consensus 174 ~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~vv~d~~ 253 (770)
T 3efo_B 174 PPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMVVTDVG 253 (770)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEEecccc
Confidence 4567789999999854 43345788999999999999865 589999999876431
Q ss_pred ---cccccccccccChhhHHHHHHHHhhh-----cCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC
Q psy10004 133 ---VPCFADILVQANLANVRELKMGVEMI-----GDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE 204 (354)
Q Consensus 133 ---~~c~~~~lv~~~~~n~~~~~~~i~~l-----~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~ 204 (354)
+|...+.++.. .+.+..+...|+.+ ......|.++.|+..|+..+.....+ -+ |++++.|.|+
T Consensus 254 d~f~P~~~~~Lv~l-~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~G-------Gk-I~~F~s~lP~ 324 (770)
T 3efo_B 254 EVFVPLLDGFLVNY-QESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKAADCP-------GK-LFIFHSSLPT 324 (770)
T ss_dssp SCCCCCSSSSSBCT-TTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHHHTCC-------EE-EEEEECSCCC
T ss_pred cccCCCccceeeeH-HHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhccCCCC-------cE-EEEEecCCCC
Confidence 12111122222 23334444444433 13346778899999999998643211 13 5555555433
Q ss_pred c------------------------------hHHHHHHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhcCCcEE
Q psy10004 205 N------------------------------YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYY 254 (354)
Q Consensus 205 ~------------------------------~~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~~~G~~ 254 (354)
. ++.+..+.. ..++.|-.|.++.+-.+...|..++..+||..
T Consensus 325 t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~--------~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 396 (770)
T 3efo_B 325 AEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCV--------AHGCSVTLFLFPSQYVDVASLGLVPQLTGGTL 396 (770)
T ss_dssp SSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHH--------HTTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred cCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHH--------HcCeEEEEEEecCCccChHHHHHHHhhcCceE
Confidence 0 012222211 23566666666666558999999999999977
Q ss_pred EEeCCh
Q psy10004 255 VHLSTL 260 (354)
Q Consensus 255 ~~i~~~ 260 (354)
++.++.
T Consensus 397 ~~y~~F 402 (770)
T 3efo_B 397 YKYNNF 402 (770)
T ss_dssp EECTTC
T ss_pred EEecCC
Confidence 776664
No 44
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=97.52 E-value=0.0033 Score=65.36 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=103.1
Q ss_pred cCCCceEEEEEeCCCC-CCcchHHHHHHHHHHHHHHcCCC-------CeEEEEEeecccccc------------------
Q psy10004 79 AASPKDMVILLDNSGS-MMGQRREIARHVINNLLDTLGNN-------DYVNVLQFTSVCKEV------------------ 132 (354)
Q Consensus 79 ~~~p~dvvillD~SgS-M~g~~~~~ak~a~~~ll~~L~~~-------d~v~vi~Fs~~~~~~------------------ 132 (354)
++.|--.+||||+|-. +...-+..+++++...|+.|.++ .+||+|+|++.++..
T Consensus 170 ~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~vv~dl~ 249 (766)
T 3eh2_A 170 FPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMMVVSDVA 249 (766)
T ss_dssp CCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEEEECCTT
T ss_pred CCCCCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEEEecChh
Confidence 4567788999999853 33335788899999999999765 689999999876431
Q ss_pred ---cccccccccccChhhHHHHHHHHhhh-----cCCCCCCcHHHHHHHHHHHHHhccccCCCCCCCcceEEEeccCCCC
Q psy10004 133 ---VPCFADILVQANLANVRELKMGVEMI-----GDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGASE 204 (354)
Q Consensus 133 ---~~c~~~~lv~~~~~n~~~~~~~i~~l-----~~~~G~T~~~~aL~~A~~~l~~~~~~~~~~~~~~~~IillTDG~~~ 204 (354)
+|...+.++.. .+.+..+...|+.+ ......|.++.|+..|+..+..... .--|++++.|.|+
T Consensus 250 d~f~P~~~~~lv~l-~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~~~--------GGkI~~F~s~lP~ 320 (766)
T 3eh2_A 250 DMFVPLLDGFLVNV-NESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKAAEC--------AGKLFLFHTSLPI 320 (766)
T ss_dssp TCCCCCCTTSSBCT-TTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTTC--------CEEEEEEECSCCC
T ss_pred hhccccccceeEeH-HHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccCCC--------CcEEEEEecCCCC
Confidence 12112222222 23344444444443 1344677899999999999864321 1236666655443
Q ss_pred c------------------------------hHHHHHHhhhcccCCCCCCCeEEEEEEeCCCCCCHHHHHHHHhcCCcEE
Q psy10004 205 N------------------------------YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYY 254 (354)
Q Consensus 205 ~------------------------------~~~i~~~~~~~~~~~~~~~~v~IftigiG~~~~~~~~L~~iA~~~~G~~ 254 (354)
. ++.+..+.. ..++.|-.|.++.+-.+...|..++..+||..
T Consensus 321 t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~--------~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 392 (766)
T 3eh2_A 321 AEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECV--------AQGCCVDLFLFPNQYVDVATLSVVPQLTGGSV 392 (766)
T ss_dssp SSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHH--------HHTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred cCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHH--------hCCeEEEEEEecCCCcChHHHHHHHhhcCceE
Confidence 1 012222211 23566666666665558999999999999977
Q ss_pred EEeCCh
Q psy10004 255 VHLSTL 260 (354)
Q Consensus 255 ~~i~~~ 260 (354)
++.++.
T Consensus 393 ~~y~~F 398 (766)
T 3eh2_A 393 YKYASF 398 (766)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 777664
No 45
>3by9_A Sensor protein; histidine kinase sensor domain, phosphoprotein, transferase, two-component regulatory system; 1.70A {Vibrio cholerae}
Probab=28.49 E-value=66 Score=27.06 Aligned_cols=65 Identities=11% Similarity=-0.017 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcCCCCceeEEeeCCCCceeecCCCCcccccccCCCCCCCCCccccccccccceeeeccCCCceEEEEEe
Q psy10004 12 ALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLD 90 (354)
Q Consensus 12 ~ld~~f~~n~~~~p~l~wqyfgs~~G~~r~yP~~~~~~~~~~~~~~~~~~~~~~~yd~r~r~wy~~a~~~p~dvvillD 90 (354)
.|...+....+ .+.+.--|+...+|.....+. |.. |. ....+|.+.|+||.++......++..+|
T Consensus 58 ~l~~~l~~~~~-~~~~~~i~i~d~~G~~~~~~~--~~~------~~-----~~~~~~~~~r~~~~~a~~~~~~~~~~~~ 122 (260)
T 3by9_A 58 ITNRYLEQVNE-VIQAADTYLIDRFGNTIASSN--WNL------DR-----SFIGRNFAWRPYFYLSIAGQKSQYFALG 122 (260)
T ss_dssp HHHHHHHHHHH-HHTCSEEEEEETTSBEEEETT--TTS------TT-----CCTTCBCTTSHHHHHHTTTSCEEEEEEC
T ss_pred HHHHHHHHHHh-hcCcceEEEECCCCCEEEecC--CCC------CC-----CccCCccccCHHHHHHHhCCCceEEEEe
Confidence 34444444332 335556789999997765543 321 00 1235788999999987765555544444
No 46
>3lic_A Sensor protein; PDC fold, ATP-binding, kinase, nucleotide-binding, phosphopr transferase, transmembrane; 2.30A {Shewanella oneidensis}
Probab=25.67 E-value=46 Score=28.41 Aligned_cols=19 Identities=21% Similarity=0.086 Sum_probs=14.4
Q ss_pred ceEEEEeeeeeecCCceeecc
Q psy10004 331 RLLTTVAMPAFDRRPRIIVSI 351 (354)
Q Consensus 331 ~l~~tv~~pv~~~~~~~~~~~ 351 (354)
.++++++.||++ +...+|+
T Consensus 144 ~~~i~~~~pi~~--~g~~~Gv 162 (274)
T 3lic_A 144 VLMITYAVPFGV--QPDYFGV 162 (274)
T ss_dssp SEEEEEEEEESC--TTCCCEE
T ss_pred eEEEEEEEEEcc--CCEEEEE
Confidence 589999999998 4445554
No 47
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=22.90 E-value=47 Score=29.87 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhcCCCCceeEEeeCCCCceeecCCCCcccccccCCCCCCCCCccccccccccceeeeccCCCceEEEEEe
Q psy10004 11 EALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLD 90 (354)
Q Consensus 11 ~~ld~~f~~n~~~~p~l~wqyfgs~~G~~r~yP~~~~~~~~~~~~~~~~~~~~~~~yd~r~r~wy~~a~~~p~dvvillD 90 (354)
+.+...+.. +...+.+..-|+...+|.....+. |.. |. .....|.+.||||.++......+.+.++
T Consensus 98 ~~l~~~L~~-~~~~~~~~~i~v~d~~G~viass~--~~~------p~-----~~~g~d~~~R~yf~~Al~g~~~~~~~~~ 163 (305)
T 3e4o_A 98 DRINRKLEA-LATSAEAAVIYLIDRSGVAVAASN--WQE------PT-----SFVGNDYAFRDYFRLAVRDGMAEHFAMG 163 (305)
T ss_dssp HHHHHHHHH-HHHHSSCSEEEEEETTSBEEEETT--TTS------TT-----CCTTCBCTTSHHHHHHHHHSEEEEEEEC
T ss_pred HHHHHHHHH-HHhccCccEEEEECCCCCEEEeCC--CcC------cc-----cccCCCccccHHHHHHHhcCCcEEEEEe
Confidence 445555554 344467888999999998766554 321 00 1223588999999987654444444443
No 48
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=20.44 E-value=63 Score=26.58 Aligned_cols=52 Identities=15% Similarity=0.288 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhcCCCCceeEEeeCCCCceeecCCCCcccccccCCCCCCCCCccccccccccceeeecc
Q psy10004 11 EALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAA 79 (354)
Q Consensus 11 ~~ld~~f~~n~~~~p~l~wqyfgs~~G~~r~yP~~~~~~~~~~~~~~~~~~~~~~~yd~r~r~wy~~a~ 79 (354)
+.+...+..-.+..|.+..-|+...+|-...... .. ...+|.+.|+||.++.
T Consensus 54 ~~~~~~L~~~~~~~~~~~~i~i~d~~G~~~~~~~---~~--------------~~~~~~~~r~~f~~a~ 105 (217)
T 4dah_A 54 KKMQSILEKTFDSEPRFSGLYFLNAKGDVTASTT---EL--------------KTKVNLADRSFFIKAK 105 (217)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEETTCBEEEESS---CC--------------SSCCBCTTSHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCcEEEecC---CC--------------CCCCCcchhHHHHHHH
Confidence 4577777777777899999999999998876542 11 1246888899998764
Done!