RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10004
(354 letters)
>gnl|CDD|238740 cd01463, vWA_VGCC_like, VWA Voltage gated Calcium channel like:
Voltage-gated calcium channels are a complex of five
proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The
alpha 2 and delta subunits result from proteolytic
processing of a single gene product and carries at its
N-terminus the VWA and cache domains, The alpha 2 delta
gene family has orthologues in D. melanogaster and C.
elegans but none have been detected in aither A.
thaliana or yeast. The exact biochemical function of the
VWA domain is not known but the alpha 2 delta complex
has been shown to regulate various functional properties
of the channel complex.
Length = 190
Score = 250 bits (639), Expect = 6e-83
Identities = 97/194 (50%), Positives = 137/194 (70%), Gaps = 6/194 (3%)
Query: 70 RVREWYINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVC 129
R R WYI AA SPKD+VILLD SGSM GQR +A+ ++++LDTL +ND+ N++ F++
Sbjct: 1 RNRSWYIQAATSPKDIVILLDVSGSMTGQRLHLAKQTVSSILDTLSDNDFFNIITFSNEV 60
Query: 130 KEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNIL--ENARNDKKT 187
VVPCF D LVQA +N + LK ++M+ +A IAN+T AL AF++L N +
Sbjct: 61 NPVVPCFNDTLVQATTSNKKVLKEALDML-EAKGIANYTKALEFAFSLLLKNLQSNHSGS 119
Query: 188 GADCNQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMA 247
+ CNQAIM++TDG ENYKE+F+++NW ++ PVRVF+YL+G+EV D R+++WMA
Sbjct: 120 RSQCNQAIMLITDGVPENYKEIFDKYNWD---KNSEIPVRVFTYLIGREVTDRREIQWMA 176
Query: 248 CANKGYYVHLSTLA 261
C NKGYY H+ +L
Sbjct: 177 CENKGYYSHIQSLD 190
>gnl|CDD|219821 pfam08399, VWA_N, VWA N-terminal. This domain is found at the
N-terminus of proteins containing von Willebrand factor
type A (VWA, pfam00092) and Cache (pfam02743) domains.
It has been found in vertebrates, Drosophila and C.
elegans but has not yet been identified in other
eukaryotes. It is probably involved in the function of
some voltage-dependent calcium channel subunits.
Length = 123
Score = 79.3 bits (196), Expect = 3e-18
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 1 EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQW 47
E+L WSEAL+ +F N+++DPSL+WQ FGS TG R +PA +W
Sbjct: 77 PEILNALNWSEALDSVFADNFESDPSLTWQYFGSATGFFRYYPATKW 123
>gnl|CDD|214621 smart00327, VWA, von Willebrand factor (vWF) type A domain. VWA
domains in extracellular eukaryotic proteins mediate
adhesion via metal ion-dependent adhesion sites (MIDAS).
Intracellular VWA domains and homologues in prokaryotes
have recently been identified. The proposed VWA domains
in integrin beta subunits have recently been
substantiated using sequence-based methods.
Length = 175
Score = 66.7 bits (163), Expect = 3e-13
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADIL 140
D+V LLD SGSM G R E+A+ + L++ L + D V ++ F+ + + P
Sbjct: 1 DVVFLLDGSGSMGGNRFELAKEFVLKLVEQLDIGPDGDRVGLVTFSDDARVLFPLNDSRS 60
Query: 141 VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTD 200
A L + L N AL A L + + GA + ++++TD
Sbjct: 61 KDALLEALASLS------YKLGGGTNLGAALQYALENLFSKSAGSRRGA--PKVVILITD 112
Query: 201 GASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTL 260
G S + + + + V+VF VG +V D ++K +A A G YV L L
Sbjct: 113 GESNDGPKDLLKAAKELKRS----GVKVFVVGVGNDV-DEEELKKLASAPGGVYVFLPEL 167
Query: 261 AE 262
+
Sbjct: 168 LD 169
>gnl|CDD|238738 cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin
inhibitor (ITI): ITI is a glycoprotein composed of three
polypeptides- two heavy chains and one light chain
(bikunin). Bikunin confers the protease-inhibitor
function while the heavy chains are involved in
rendering stability to the extracellular matrix by
binding to hyaluronic acid. The heavy chains carry the
VWA domain with a conserved MIDAS motif. Although the
exact role of the VWA domains remains unknown, it has
been speculated to be involved in mediating
protein-protein interactions with the components of the
extracellular matrix.
Length = 171
Score = 65.3 bits (160), Expect = 9e-13
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILV 141
PK++V ++D SGSM G + E + + L L DY N++ F+ +E P V
Sbjct: 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEFSPS----SV 57
Query: 142 QANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDG 201
A NV V + A N AL A +L ++ I+++TDG
Sbjct: 58 SATAENVAAAIEYVNRL-QALGGTNMNDALEAALELLNSSP-------GSVPQIILLTDG 109
Query: 202 ASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLA 261
N ++ + + S +R+F++ +G +V + ++ +A +G +
Sbjct: 110 EVTNESQILKNVR---EALSG--RIRLFTFGIGSDV-NTYLLERLAREGRGIARRIYETD 163
Query: 262 EVRDQIL 268
++ Q+L
Sbjct: 164 DIESQLL 170
>gnl|CDD|238119 cd00198, vWFA, Von Willebrand factor type A (vWA) domain was
originally found in the blood coagulation protein von
Willebrand factor (vWF). Typically, the vWA domain is
made up of approximately 200 amino acid residues folded
into a classic a/b para-rossmann type of fold. The vWA
domain, since its discovery, has drawn great interest
because of its widespread occurrence and its involvement
in a wide variety of important cellular functions. These
include basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains.
Length = 161
Score = 62.6 bits (152), Expect = 7e-12
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 22/162 (13%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADIL 140
D+V LLD SGSM G++ + A+ + L+ +L D V ++ F S + V+P D
Sbjct: 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNARVVLPLTTDTD 61
Query: 141 VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTD 200
L + LK G+ G NI AL A +L++A+ + I+++TD
Sbjct: 62 KADLLEAIDALKKGL---GGGTNIGA---ALRLALELLKSAKRPNA-----RRVIILLTD 110
Query: 201 GASENYKEVFEEF--NWRGQNDSTLWPVRVFSYLVGKEVADY 240
G + E+ E R + V++ +G + +
Sbjct: 111 GEPNDGPELLAEAARELRKLG------ITVYTIGIGDDANED 146
>gnl|CDD|222192 pfam13519, VWA_2, von Willebrand factor type A domain.
Length = 172
Score = 62.8 bits (153), Expect = 7e-12
Identities = 52/194 (26%), Positives = 76/194 (39%), Gaps = 28/194 (14%)
Query: 84 DMVILLDNSGSMMGQ-----RREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFAD 138
D+VI+LD SGSM R A+ I +LL L D V ++ F V+P D
Sbjct: 1 DLVIVLDVSGSMNATDLKPSRLTRAKAAIADLLARL-PGDRVGLIAFAGSAYLVLPLTDD 59
Query: 139 ILVQANLAN-VRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMV 197
+A LA + L + G N AL A +L A AI++
Sbjct: 60 ---RAALAAALPALSPRIMPGGG----TNLAAALALALRLLAGAGGGSG-------AIVL 105
Query: 198 VTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHL 257
+TDG + E + Q VRV+ VG + ++ +A A G YV
Sbjct: 106 ITDGEDTP--SLLEAASALKQAG-----VRVYVLGVGTDEGAEDALQRLAKATGGRYVDA 158
Query: 258 STLAEVRDQILSYV 271
+ A D +L +
Sbjct: 159 TADAADLDALLQAI 172
>gnl|CDD|234353 TIGR03788, marine_srt_targ, marine proteobacterial sortase target
protein. Members of this protein family are restricted
to the Proteobacteria. Each contains a C-terminal
sortase-recognition motif, transmembrane domain, and
basic residues cluster at the the C-terminus, and is
encoded adjacent to a sortase gene. This protein is
frequently the only sortase target in its genome, which
is as unusual its occurrence in Gram-negative rather
than Gram-positive genomes. Many bacteria with this
system are marine. In addition to the LPXTG signal,
members carry a vault protein inter-alpha-trypsin
inhibitor domain (pfam08487) and a von Willebrand factor
type A domain (pfam00092).
Length = 596
Score = 63.2 bits (154), Expect = 6e-11
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 78 AAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVC----KEVV 133
A P+++V ++D SGSM G+ E A+ + LD L D N++QF S V
Sbjct: 267 AQVLPRELVFVIDTSGSMAGESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLLFPVPV 326
Query: 134 PCFADILVQANLANVRELKM--GVEMIGDANNIANFTVALTRAFNILENARNDKKTGADC 191
P A L +A V L+ G EM G AL+ A R+D +
Sbjct: 327 PATAHNLARAR-QFVAGLQADGGTEMAG----------ALSAAL------RDDGPESSGA 369
Query: 192 NQAIMVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFS----YLVGKEVADYRDVKWMA 247
+ ++ +TDGA N +F+ DS L+ V + S Y + ++ A
Sbjct: 370 LRQVVFLTDGAVGNEDALFQLIR-TKLGDSRLFTVGIGSAPNSYFM-RKAAQ-------- 419
Query: 248 CANKGYYVHLSTLAEVRDQILSYVPVMARPLV 279
+G + + + EV+ ++ + +P +
Sbjct: 420 -FGRGSFTFIGSTDEVQRKMSQLFAKLEQPAL 450
>gnl|CDD|215711 pfam00092, VWA, von Willebrand factor type A domain.
Length = 178
Score = 51.2 bits (123), Expect = 9e-08
Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 25/172 (14%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADI- 139
D+V LLD SGS+ E + I L++ L + V ++Q++S D
Sbjct: 1 DIVFLLDGSGSIGEANFEKVKEFIKKLVERLDIGPDGTRVGLVQYSSDVTTEFS-LNDYK 59
Query: 140 ---LVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIM 196
+ + ++ G G A AL F+ +R + + ++
Sbjct: 60 SKDDLLSAVSKNIYYLGGGTNTGKA-----LKYALENLFSSSAGSR------PNAPKVVI 108
Query: 197 VVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMAC 248
++TDG S + V + + VF VG D +++ +A
Sbjct: 109 LLTDGKSNDGGLVPAAAAALRRKVG----IIVFG--VGVGDVDEEELRLIAS 154
>gnl|CDD|222367 pfam13768, VWA_3, von Willebrand factor type A domain.
Length = 156
Score = 43.9 bits (104), Expect = 2e-05
Identities = 35/173 (20%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 83 KDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQ 142
D+VIL+D S SM G+ + + ++ +L +L D NV+ F + E P F
Sbjct: 1 GDVVILVDVSSSMSGEPINLVKDALSAILRSLPPRDKFNVVLFGT---EPRPLFPGGRA- 56
Query: 143 ANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDGA 202
+ ++++EL ++ + N AL A L++ + +++++DG+
Sbjct: 57 VSSSHLQELLQFIKTLEPPLGGTNLLGALKLAMRALKSPGIIR--------HVLLLSDGS 108
Query: 203 SENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYV 255
+ + + +R+F+Y +G ++ +A A G Y
Sbjct: 109 PSDNPSRTSQLIRQAPRH-----IRIFAYGLG-PTLSPDMLQELAEAGGGSYE 155
>gnl|CDD|238727 cd01450, vWFA_subfamily_ECM, Von Willebrand factor type A (vWA)
domain was originally found in the blood coagulation
protein von Willebrand factor (vWF). Typically, the vWA
domain is made up of approximately 200 amino acid
residues folded into a classic a/b para-rossmann type of
fold. The vWA domain, since its discovery, has drawn
great interest because of its widespread occurrence and
its involvement in a wide variety of important cellular
functions. These include basal membrane formation, cell
migration, cell differentiation, adhesion, haemostasis,
signaling, chromosomal stability, malignant
transformation and in immune defenses In integrins
these domains form heterodimers while in vWF it forms
multimers. There are different interaction surfaces of
this domain as seen by the various molecules it
complexes with. Ligand binding in most cases is mediated
by the presence of a metal ion dependent adhesion site
termed as the MIDAS motif that is a characteristic
feature of most, if not all A domains .
Length = 161
Score = 41.5 bits (98), Expect = 1e-04
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADIL 140
D+V LLD S S+ + E + I L++ L + V ++Q++ + D
Sbjct: 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVRVEFS-LNDYK 60
Query: 141 VQANL-ANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVT 199
+ +L V+ LK + G N AL A LE ++ + + I+V+T
Sbjct: 61 SKDDLLKAVKNLK---YLGGGGTNTGK---ALQYA---LEQLFSESNARENVPKVIIVLT 111
Query: 200 DGASENYKEVFEE 212
DG S++ + E
Sbjct: 112 DGRSDDGGDPKEA 124
>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate,
extracellular matrix molecules mediate cell-matrix and
matrix-matrix interactions thereby providing tissue
integrity. Some members of the matrilin family are
expressed specifically in developing cartilage
rudiments. The matrilin family consists of at least four
members. All the members of the matrilin family contain
VWA domains, EGF-like domains and a heptad repeat
coiled-coiled domain at the carboxy terminus which is
responsible for the oligomerization of the matrilins.
The VWA domains have been shown to be essential for
matrilin network formation by interacting with matrix
ligands.
Length = 224
Score = 40.8 bits (96), Expect = 4e-04
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPC-- 135
P D+V L+D+S S+ + E+ + +N ++D+L + V ++Q++S K+ P
Sbjct: 1 GPTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVKQEFPLGR 60
Query: 136 --FADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQ 193
L +A + + L+ G M G A A+ AF+ E AR +
Sbjct: 61 FKSKADLKRA-VRRMEYLETGT-MTGLA-----IQYAMNNAFSEAEGAR---PGSERVPR 110
Query: 194 AIMVVTDGASENY 206
+VVTDG ++
Sbjct: 111 VGIVVTDGRPQDD 123
>gnl|CDD|238739 cd01462, VWA_YIEM_type, VWA YIEM type: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Members of this subgroup have a conserved MIDAS
motif, however, their biochemical function is not well
characterised.
Length = 152
Score = 39.6 bits (93), Expect = 6e-04
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 83 KDMVILLDNSGSMMGQRREIARHVINNLLDTLG--NNDYVNVLQFTSVCKEVVPCFADIL 140
+++L+D SGSM G E+A+ V LL N D +L + ++V
Sbjct: 1 GPVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVD------ 54
Query: 141 VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTD 200
+L E GV++ G + AL A ++E AD I+++TD
Sbjct: 55 KTDDLEEPVEFLSGVQLGGG----TDINKALRYALELIE---RRDPRKAD----IVLITD 103
Query: 201 G 201
G
Sbjct: 104 G 104
>gnl|CDD|238743 cd01466, vWA_C3HC4_type, VWA C3HC4-type: Von Willebrand factor type
A (vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Membes of this subgroup belong to Zinc-finger
family as they are found fused to RING finger domains.
The MIDAS motif is not conserved in all the members of
this family. The function of vWA domains however is not
known.
Length = 155
Score = 37.0 bits (86), Expect = 0.004
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 15/120 (12%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILVQA 143
D+V +LD SGSM G + ++ +H + ++ +LG+ D ++++ F++ K + P L +
Sbjct: 2 DLVAVLDVSGSMAGDKLQLVKHALRFVISSLGDADRLSIVTFSTSAKRLSP-----LRRM 56
Query: 144 NLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQ--AIMVVTDG 201
R K V+ A N L +A +L + R N +IM+++DG
Sbjct: 57 TAKGKRSAKRVVD-GLQAGGGTNVVGGLKKALKVLGDRRQK-------NPVASIMLLSDG 108
>gnl|CDD|238744 cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses. In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Members of this subgroup are bacterial in
origin. They are typified by the presence of a MIDAS
motif.
Length = 180
Score = 32.7 bits (75), Expect = 0.14
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 84 DMVILLDNSGSMMGQ------RREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFA 137
D++I LD SGSM+ Q R E A+ V+++ +D ND + ++ F P
Sbjct: 4 DIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDRR-ENDRIGLVVFAGAAFTQAPLTL 62
Query: 138 D-ILVQANLANVRELKMGVEM-IGDANNIANFTVALTRAFNILENARNDKKTGADCNQAI 195
D ++ L +++ G IGDA I A L+N+ ++ I
Sbjct: 63 DRESLKELLEDIKIGLAGQGTAIGDA--IGL-------AIKRLKNSEAKER-------VI 106
Query: 196 MVVTDG 201
+++TDG
Sbjct: 107 VLLTDG 112
>gnl|CDD|238757 cd01480, vWA_collagen_alpha_1-VI-type, VWA_collagen alpha(VI) type:
The extracellular matrix represents a complex alloy of
variable members of diverse protein families defining
structural integrity and various physiological
functions. The most abundant family is the collagens
with more than 20 different collagen types identified
thus far. Collagens are centrally involved in the
formation of fibrillar and microfibrillar networks of
the extracellular matrix, basement membranes as well as
other structures of the extracellular matrix. Some
collagens have about 15-18 vWA domains in them. The VWA
domains present in these collagens mediate
protein-protein interactions.
Length = 186
Score = 32.7 bits (75), Expect = 0.17
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY---------VNVLQFTSVCKE 131
P D+ +LD+S S+ Q +I ++ + + + + Y V V+Q+ S +E
Sbjct: 1 GPVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQY-SDQQE 59
Query: 132 VVPCFADILVQANLANVRELKMGVEMIGDANNIANFTV-ALTRAFNILENARNDKKTGAD 190
V F + N +++E +E IG FT AL A L
Sbjct: 60 VEAGFLRDI--RNYTSLKEAVDNLEYIGG----GTFTDCALKYATEQLLEGS-----HQK 108
Query: 191 CNQAIMVVTDGAS 203
N+ ++V+TDG S
Sbjct: 109 ENKFLLVITDGHS 121
>gnl|CDD|238741 cd01464, vWA_subfamily, VWA subfamily: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Members of this subgroup have no assigned
function. This subfamily is typified by the presence of
a conserved MIDAS motif.
Length = 176
Score = 32.3 bits (74), Expect = 0.22
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 27/143 (18%)
Query: 86 VILLDNSGSMMGQRREIARHVINNLLDTLGNNDY------VNVLQFTSVCKEVVPCFADI 139
+LLD SGSM G+ E + L L + Y ++V+ F S + +VP
Sbjct: 7 YLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDSAARVIVP----- 61
Query: 140 LVQANLANVRELKM-GVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVV 198
L L G +G A +AL ++ R D+K D + ++
Sbjct: 62 LTPLESFQPPRLTASGGTSMGAA-----LELALDCIDRRVQRYRADQK--GDWRPWVFLL 114
Query: 199 TDG--------ASENYKEVFEEF 213
TDG A E KE +
Sbjct: 115 TDGEPTDDLTAAIERIKEARDSK 137
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 32.7 bits (75), Expect = 0.24
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 27/138 (19%)
Query: 83 KDMVILLDNSGSMMGQRREIARHVINNLLDTLG--NNDYVNVLQFTSVCKEVVPCFADIL 140
+++LLD SGSM G + + A+ V L+ N D +L F +
Sbjct: 273 GPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVIL------------FDSEV 320
Query: 141 VQANLANVRELKMGVEMIGDANNI----ANFTVALTRAFNILENARNDKKTGADCNQAIM 196
++ L + E+I + + + T AL A LE+ ++ + AD I+
Sbjct: 321 IEYELY--EKKIDIEELIEFLSYVFGGGTDITKALRSA---LEDLKSRELFKAD----IV 371
Query: 197 VVTDGASENYKEVFEEFN 214
V+TDG E + +
Sbjct: 372 VITDGEDERLDDFLRKVK 389
>gnl|CDD|238742 cd01465, vWA_subgroup, VWA subgroup: Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Not much is known about the function of the VWA
domain in these proteins. The members do have a
conserved MIDAS motif. The biochemical function however
is not known.
Length = 170
Score = 31.9 bits (73), Expect = 0.25
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 85 MVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVP 134
+V ++D SGSM G + + + + L+D L +D + ++ + + V+P
Sbjct: 3 LVFVIDRSGSMDGPKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAETVLP 52
>gnl|CDD|238748 cd01471, vWA_micronemal_protein, Micronemal proteins: The
Toxoplasma lytic cycle begins when the parasite actively
invades a target cell. In association with invasion, T.
gondii sequentially discharges three sets of secretory
organelles beginning with the micronemes, which contain
adhesive proteins involved in parasite attachment to a
host cell. Deployed as protein complexes, several
micronemal proteins possess vertebrate-derived adhesive
sequences that function in binding receptors. The VWA
domain likely mediates the protein-protein interactions
of these with their interacting partners.
Length = 186
Score = 31.6 bits (72), Expect = 0.38
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 84 DMVILLDNSGSMMGQRR-EIARHVINNLLDTLG-NNDYVNV--LQFTSVCKEVVPCFADI 139
D+ +L+D SGS+ ++ + L + D +N+ + F++ KE++ +
Sbjct: 2 DLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAKELIRLSSPN 61
Query: 140 LVQANLAN--VRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMV 197
+LA +R L N N T AL L + R +++ + Q +++
Sbjct: 62 STNKDLALNAIRALLSLYY----PNGSTNTTSALLVVEKHLFDTRGNRE---NAPQLVII 114
Query: 198 VTDGASEN 205
+TDG ++
Sbjct: 115 MTDGIPDS 122
>gnl|CDD|238875 cd01837, SGNH_plant_lipase_like, SGNH_plant_lipase_like, a plant
specific subfamily of the SGNH-family of hydrolases, a
diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
Ser-His-Asp(Glu) triad found in other serine hydrolases.
Length = 315
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 100 REIARHVINNLLDT--LGNNDYVNVLQFTSVCKEVVPCFADILVQANLANVREL-KMG 154
E A +++ L +G+NDY+N + V + LV + ++ L +G
Sbjct: 120 EEAAADILSKSLFLISIGSNDYLNNYFANPTRQYEVEAYVPFLVSNISSAIKRLYDLG 177
>gnl|CDD|226696 COG4245, TerY, Uncharacterized protein encoded in toxicity
protection region of plasmid R478, contains von
Willebrand factor (vWF) domain [General function
prediction only].
Length = 207
Score = 30.1 bits (68), Expect = 1.2
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 86 VILLDNSGSMMGQRREIARHVINNLLDTLGNNDY------VNVLQFTSVCKEVVPCFADI 139
+LLD SGSM+G+ E + ++DTL + Y ++++ F + + P F D
Sbjct: 7 YLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP-FTDA 65
Query: 140 L 140
Sbjct: 66 A 66
>gnl|CDD|224161 COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme metabolism].
Length = 261
Score = 30.4 bits (69), Expect = 1.2
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 84 DMVILLDNSGSMMGQRR-EIARHVINNLL-DTLGNNDYVNVLQFTSVCKEVVPCFADILV 141
+V ++D SGSM +RR A+ +LL D D V V+ F E++ +
Sbjct: 80 LIVFVVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELL-----LPP 134
Query: 142 QANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDG 201
+++ + G +A+ AL +A+ +L +K+ G D ++V+TDG
Sbjct: 135 TSSVELAERALERLPT-GGKTPLAD---ALRQAYEVL---AREKRRGPDRRPVMVVITDG 187
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 30.7 bits (69), Expect = 1.3
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 22/141 (15%)
Query: 84 DMVILLDNSGSMMGQRREIARHVI---NNLLDTLGNND-----YVNVLQFTSVCKEVVPC 135
D+ +L+D SGS+ HVI L+ L +D Y+++ F++ E++
Sbjct: 44 DLYLLVDGSGSI--GYHNWITHVIPMLMGLIQQLNLSDDAINLYMSL--FSNNTTELIRL 99
Query: 136 FAD--ILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQ 193
+ + L V+ L+ G N +T A + ND+ + Q
Sbjct: 100 GSGASKDKEQALIIVKSLRKTYLPYGKTN--------MTDALLEVRKHLNDRVNRENAIQ 151
Query: 194 AIMVVTDGASENYKEVFEEFN 214
++++TDG + EE
Sbjct: 152 LVILMTDGIPNSKYRALEESR 172
>gnl|CDD|234208 TIGR03436, acidobact_VWFA, VWFA-related Acidobacterial domain.
Members of this family are bacterial domains that
include a region related to the von Willebrand factor
type A (VWFA) domain (pfam00092). These domains are
restricted to, and have undergone a large paralogous
family expansion in, the Acidobacteria, including
Solibacter usitatus and Acidobacterium capsulatum ATCC
51196.
Length = 296
Score = 30.0 bits (68), Expect = 1.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDT-LGNNDYVNVLQF 125
P + +++D SGS M + AR L T L ND V V+ F
Sbjct: 53 PLTVGLVIDTSGS-MRNDLDRARAAAIRFLKTVLRPNDRVFVVTF 96
>gnl|CDD|226810 COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General
function prediction only].
Length = 509
Score = 29.2 bits (65), Expect = 3.6
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 15/125 (12%)
Query: 160 DANNIANFTVALTRAFNIL---ENARNDKKTGADCNQAIMVVTDGASENYKEVFEEFNWR 216
D + I + +A F I N +N + VV D A+ + E +E +
Sbjct: 104 DKSAILTYVIAFASGFKITALSSNPKNLRGKQGK------VVIDEAA--FHEDLDEL-LK 154
Query: 217 GQNDSTLW--PVRVFSYLVGKEVADYRDVKWMACANKGYYVHLSTLAE-VRDQILSYVPV 273
T+W PVRV S G + + ++ K Y VH TL + + D + +
Sbjct: 155 AAAALTMWGAPVRVISTHNGVDNLFNQMIQEARQGRKKYSVHSITLDDAIADGLYERICN 214
Query: 274 MARPL 278
+ RP
Sbjct: 215 VDRPA 219
>gnl|CDD|238733 cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A
(vWA) domain was originally found in the blood
coagulation protein von Willebrand factor (vWF).
Typically, the vWA domain is made up of approximately
200 amino acid residues folded into a classic a/b
para-rossmann type of fold. The vWA domain, since its
discovery, has drawn great interest because of its
widespread occurrence and its involvement in a wide
variety of important cellular functions. These include
basal membrane formation, cell migration, cell
differentiation, adhesion, haemostasis, signaling,
chromosomal stability, malignant transformation and in
immune defenses In integrins these domains form
heterodimers while in vWF it forms multimers. There are
different interaction surfaces of this domain as seen by
the various molecules it complexes with. Ligand binding
in most cases is mediated by the presence of a metal ion
dependent adhesion site termed as the MIDAS motif that
is a characteristic feature of most, if not all A
domains. Not much is known about the function of the
members of this subgroup. All members of this subgroup
however have a conserved MIDAS motif. .
Length = 206
Score = 28.2 bits (63), Expect = 6.4
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 31/147 (21%)
Query: 73 EWYINAAASPKDMVILLDNSGSMM-----GQRR-EIARHVINNLLDTLGNNDYVNVLQFT 126
E P ++ I+LDNSGSM G+ R + A+ ++ + L + + + F+
Sbjct: 11 EPVETEPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANALPDGTRLGLWTFS 70
Query: 127 SVCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANF-TVALTRAFNILENARND- 184
N +VR L + N + AL A N L+
Sbjct: 71 G-------------DGDNPLDVRVLVPKGCLTAPVNGFPSAQRSALDAALNSLQTPTGWT 117
Query: 185 ------KKTGADCN----QAIMVVTDG 201
+ A + ++++TDG
Sbjct: 118 PLAAALAEAAAYVDPGRVNVVVLITDG 144
>gnl|CDD|237206 PRK12793, flaF, flagellar biosynthesis regulatory protein FlaF;
Reviewed.
Length = 115
Score = 26.9 bits (60), Expect = 7.0
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 288 VWTPIYADVTDPK-----------LSDWLWELKECEEQRERSSYD 321
+WT + D+ P+ +S LW LKE + R+ S +
Sbjct: 55 LWTVLIEDLGSPENALPEELRADLISIGLWVLKEADRIRQGESNN 99
>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional.
Length = 401
Score = 28.3 bits (64), Expect = 7.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 85 MVILLDNSGSMMGQRREIAR 104
M L+D SGSM +++A+
Sbjct: 225 MFCLMDVSGSMDEAEKDLAK 244
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 27.9 bits (62), Expect = 7.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 136 FADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTG 188
F + L +A L +VR+ I DA ++ N +L +A N L A N+ K+
Sbjct: 50 FDEALREAELDDVRQT------ISDARSL-NPRTSLRQAMNPLRQAGNEIKSD 95
>gnl|CDD|220202 pfam09359, VTC, VTC domain. This presumed domain is found in the
yeast vacuolar transport chaperone proteins VTC2, VTC3
and VTC4. This domain is also found in a variety of
bacterial proteins.
Length = 239
Score = 27.7 bits (62), Expect = 8.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 253 YYVHLSTLAEVRDQILSYVPVMARPLVLQRNDHPIVWTPIYAD 295
Y+VH L E++ +IL ++PV+ + D+ I T +Y D
Sbjct: 7 YWVHPDNLMELKTRILRHLPVLVYNNTNESGDYTI--TSLYFD 47
>gnl|CDD|128870 smart00607, FTP, eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Length = 151
Score = 27.1 bits (60), Expect = 9.5
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 74 WYINAAASP-KDMVILLDNSGSMMGQRREIARHVINNLLDTLGNN 117
W+ + + N G G+R AR +I N L+ G N
Sbjct: 53 WWRVDLLQYMTIHSVTITNRGDCCGERITGARILIGNSLENGGIN 97
>gnl|CDD|117912 pfam09370, TIM-br_sig_trns, TIM-barrel signal transduction protein.
This domain is likely to have a TIM barrel fold related
to IGPS. Although this family of proteins are
functionally uncharacterized this domain is found as an
N-terminal domain of sigma 54 -dependent transcriptional
activators (enhancer-binding proteins) suggesting a
potential role in signal recognition/receiving and
signal transduction.
Length = 268
Score = 27.6 bits (62), Expect = 9.7
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 146 ANVRELKMG----VEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDG 201
N+ E MG VEMI A+ T FN+ E AR + GAD A M +T G
Sbjct: 127 QNLEETGMGYDLEVEMIRLAHEKGLLTTPY--VFNV-EEARAMAEAGADIIVAHMGLTTG 183
Query: 202 ASENYK 207
+
Sbjct: 184 GTIGAD 189
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,244,942
Number of extensions: 1735958
Number of successful extensions: 1332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1317
Number of HSP's successfully gapped: 45
Length of query: 354
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 256
Effective length of database: 6,590,910
Effective search space: 1687272960
Effective search space used: 1687272960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.8 bits)