RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10004
(354 letters)
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, blood
clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Length = 464
Score = 88.5 bits (219), Expect = 1e-19
Identities = 37/208 (17%), Positives = 74/208 (35%), Gaps = 24/208 (11%)
Query: 78 AAASPKDMVILLDNSGSM--MGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPC 135
A+ S VI++D SGSM + A+ +DTL + + V+ T + V P
Sbjct: 73 ASGSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYPT 132
Query: 136 FADILVQANLANVRELKMGVEMI--GDANNIANFTVALTRAFNILENARNDKKTGADCNQ 193
L++A+ + K V + + L +A I + A + K
Sbjct: 133 -GGQLLRADYQSRAAAKEAVGRLHANGGTAMGR---WLAQAGRIFDTAPSAIK------- 181
Query: 194 AIMVVTDGASEN--YKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANK 251
+++TDG E+ ++ N +G++ + ++++ +A A
Sbjct: 182 HAILLTDGKDESETPADLARAIQSSIGN------FTADCRGIGEDW-EPKELRKIADALL 234
Query: 252 GYYVHLSTLAEVRDQILSYVPVMARPLV 279
G + A + + V
Sbjct: 235 GTVGIIRDPATLAEDFREMTAKSMGKEV 262
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 52.2 bits (125), Expect = 3e-08
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 15/122 (12%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLL-DTLGNNDYVNVLQFTSVCKEVVPCFADI 139
S + ++ +D SGS R A+ + LL D+V+++ F +V+ +
Sbjct: 4 SDRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQVLLQPSR- 62
Query: 140 LVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVT 199
++ + K ++ + + A + AR+ T I ++T
Sbjct: 63 -------SLTQTKRQLQGL-PGGGGTPLASGMEMAMVTAKQARSRGMTP-----TIALLT 109
Query: 200 DG 201
DG
Sbjct: 110 DG 111
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A
domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Length = 223
Score = 49.5 bits (118), Expect = 4e-07
Identities = 29/211 (13%), Positives = 75/211 (35%), Gaps = 23/211 (10%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY---VNVLQFTSVCKEVVPCFADIL 140
++ ++LD S S+ A+ + NL++ + + ++ + + K V
Sbjct: 17 NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 76
Query: 141 VQAN--LANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTG-ADCNQAIMV 197
A+ + E+ + N AL ++++ + G I++
Sbjct: 77 SNADWVTKQLNEINYEDHKLKSGTNTKK---ALQAVYSMMSWPDDVPPEGWNRTRHVIIL 133
Query: 198 VTDGAS------ENYKEVFEEFNWRGQNDSTLWP--VRVFSYLVGKEVADYRDVKWMACA 249
+TDG + + + G++ + V+ + VG V + ++ +A
Sbjct: 134 MTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLV-NQVNINALASK 192
Query: 250 NKG----YYVH-LSTLAEVRDQILSYVPVMA 275
+ V + L +V Q++ ++
Sbjct: 193 KDNEQHVFKVKDMENLEDVFYQMIDESQSLS 223
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane
protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a
1sht_X 1t6b_Y*
Length = 182
Score = 47.4 bits (113), Expect = 1e-06
Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADI- 139
D+ +LD SGS+ EI V + ++ + F+S ++P D
Sbjct: 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRG 64
Query: 140 LVQANLANVRELKMGVE-MIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVV 198
+ L +++ + E I + L A ++ A G + I+ +
Sbjct: 65 KISKGLEDLKRVSPVGETYIHE---------GLKLANEQIQKAG-----GLKTSSIIIAL 110
Query: 199 TDGASE 204
TDG +
Sbjct: 111 TDGKLD 116
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A
{Homo sapiens} SCOP: c.62.1.1
Length = 198
Score = 44.3 bits (105), Expect = 1e-05
Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 35/207 (16%)
Query: 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY-VNVLQFTSVCKEVVPCFAD 138
+D+V L+D SGS+ + + + ++ +++QF++ + F +
Sbjct: 7 RQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFT-FEE 65
Query: 139 ILVQANLAN-VRELK--MGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAI 195
+N + + + G A + R F+ AR D + +
Sbjct: 66 FRRSSNPLSLLASVHQLQGFTYTATA-----IQNVVHRLFHASYGARRDAA------KIL 114
Query: 196 MVVTDGAS----ENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDV---KWMAC 248
+V+TDG +YK+V + G + ++ VG + +A
Sbjct: 115 IVITDGKKEGDSLDYKDVIPMADAAG--------IIRYAIGVGLAFQNRNSWKELNDIAS 166
Query: 249 ANKGYYVHL----STLAEVRDQILSYV 271
++ L ++++Q+ +
Sbjct: 167 KPSQEHIFKVEDFDALKDIQNQLKEKI 193
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo
sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I
3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A
1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B*
2ica_A* 2o7n_A* 3m6f_A* ...
Length = 179
Score = 43.9 bits (104), Expect = 2e-05
Identities = 28/196 (14%), Positives = 66/196 (33%), Gaps = 28/196 (14%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY-VNVLQFTSVCKEVVPCFADIL 140
D+V L D S S+ + + +++ N Y +QF++ K F+D +
Sbjct: 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFD-FSDYV 60
Query: 141 VQANLAN-VRELK--MGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMV 197
+ + ++ +K + + A T F AR D + +++
Sbjct: 61 KRKDPDALLKHVKHMLLLTNTFGA-----INYVATEVFREELGARPDAT------KVLII 109
Query: 198 VTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHL 257
+TDG + + N D + + + + + + A +V +
Sbjct: 110 ITDGEAT------DSGNIDAAKDIIRYIIGIGKH--FQTKESQETLHKFASKPASEFVKI 161
Query: 258 ----STLAEVRDQILS 269
L ++ ++
Sbjct: 162 LDTFEKLKDLCTELQK 177
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON
willebrand DISE domain, haemostasis; HET: NAG; 1.70A
{Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Length = 199
Score = 43.8 bits (104), Expect = 2e-05
Identities = 26/202 (12%), Positives = 64/202 (31%), Gaps = 37/202 (18%)
Query: 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTL--GNNDY-VNVLQFTSVCKEVVPCF 136
+ D+ +L+ S + ++ + ++ + G + V VLQ++ + P F
Sbjct: 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYP-F 77
Query: 137 ADIL----VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCN 192
++ + L +R G A +F + + R
Sbjct: 78 SEAQSKGDILQRLREIRYQGGNRTNTGLA-----LRYLSDHSFLVSQGDREQAP------ 126
Query: 193 QAIMVVTDGASENYKEVFEEFNWRGQNDSTLWP--VRVFSYLVGKEVADYRDVKWMACAN 250
+ +VT + ++ P ++V VG A+ ++++ + N
Sbjct: 127 NLVYMVTGNPA--------------SDEIKRLPGDIQVVPIGVGPN-ANVQELERIGWPN 171
Query: 251 KGYYVH-LSTLAEVRDQILSYV 271
+ TL ++
Sbjct: 172 APILIQDFETLPREAPDLVLQR 193
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens}
Length = 185
Score = 43.2 bits (102), Expect = 3e-05
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 16/126 (12%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY-VNVLQFTSVCKEVVPC--FA 137
D+ +LD SGS + + + L + ++ + F++ ++
Sbjct: 6 GGFDLYFILDKSGS-VLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLMKLTEDR 64
Query: 138 DILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMV 197
+ + Q + L G + + F A + + I+
Sbjct: 65 EQIRQGLEELQKVLPGGDTYMHEG-----FERASEQIYYENRQGYRTAS-------VIIA 112
Query: 198 VTDGAS 203
+TDG
Sbjct: 113 LTDGEL 118
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP:
c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A
1bhq_1 1bho_1 1idn_1 3qa3_G
Length = 194
Score = 40.4 bits (95), Expect = 3e-04
Identities = 32/205 (15%), Positives = 72/205 (35%), Gaps = 35/205 (17%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY-VNVLQFTSVCKEVVPCFADIL 140
D+ L+D SGS++ + ++ +++ L + +++Q++ + F +
Sbjct: 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFT-FKEFQ 63
Query: 141 VQANLAN-VRELK--MGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMV 197
N + V+ + +G + FNI AR + + ++V
Sbjct: 64 NNPNPRSLVKPITQLLGRTHTATG-----IRKVVRELFNITNGARKNAF------KILVV 112
Query: 198 VTDGAS----ENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDV---KWMACAN 250
+TDG Y++V E + G V + VG + +A
Sbjct: 113 ITDGEKFGDPLGYEDVIPEADREG--------VIRYVIGVGDAFRSEKSRQELNTIASKP 164
Query: 251 KGYYVHL----STLAEVRDQILSYV 271
+V L +++Q+ +
Sbjct: 165 PRDHVFQVNNFEALKTIQNQLREKI 189
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein
structure, midwest center for S genomics, MCSG, PSI-2;
HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Length = 218
Score = 40.0 bits (94), Expect = 4e-04
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 19/124 (15%)
Query: 84 DMVILLDNSGSMMGQ-----RREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFAD 138
+++I LD S SM+ Q R E A+ +I+ L+D L +ND V ++ F +P +D
Sbjct: 13 EVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDEL-DNDKVGMIVFAGDAFTQLPITSD 71
Query: 139 ILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVV 198
+ + + + + I A+ A + AI+V+
Sbjct: 72 YISAKMF--LESISPSL-ISKQGTAIGE---AINLATRSFTPQEGVGR-------AIIVI 118
Query: 199 TDGA 202
TDG
Sbjct: 119 TDGE 122
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide
binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB:
4dmu_B 2adf_A 1fe8_A 1ao3_A
Length = 189
Score = 39.6 bits (93), Expect = 5e-04
Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 35/205 (17%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTL--GNNDY-VNVLQFTSVCKEVVPCFA 137
P D+++LLD S S + + + G V+VLQ+ S+ VP +
Sbjct: 4 QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVP-WN 62
Query: 138 DILVQANLAN-VRELK--MGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQA 194
+ +A+L + V ++ G IGDA A+ + + AR +A
Sbjct: 63 VVPEKAHLLSLVDVMQREGGPSQIGDA-----LGFAVRYLTSEMHGARPGAS------KA 111
Query: 195 IMVVTDGAS-ENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMA---CAN 250
++++ S ++ + V VF +G D ++ +A +
Sbjct: 112 VVILVTDVSVDSVDAAADAARSNR--------VTVFPIGIGDRY-DAAQLRILAGPAGDS 162
Query: 251 KGYYVH----LSTLAEVRDQILSYV 271
+ L T+ + + L +
Sbjct: 163 NVVKLQRIEDLPTMVTLGNSFLHKL 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 7e-04
Identities = 45/313 (14%), Positives = 81/313 (25%), Gaps = 95/313 (30%)
Query: 32 FGSTTGALRV-----------FPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAA 80
G T AL V F W + + PE + + L
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLL-----------YQ 208
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADIL 140
+ D+S ++ R + + LL + Y N L L
Sbjct: 209 IDPNWTSRSDHSSNIK-LRIHSIQAELRRLLK---SKPYENCL----------------L 248
Query: 141 VQANLANVRELKMGVEMIGDANNIANF-----TVALTRAFNILENARNDKKTGADCNQAI 195
V L NV+ +A F + TR + + T +
Sbjct: 249 V---LLNVQ----------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 196 MVVTDGASENYKEVFEEFNWRGQNDSTLWPVRVFSY------LVGKEVADYRDVKWMACA 249
M +T + + + L P V + ++ + + D W
Sbjct: 296 MTLTPDEVK---SLLL--KYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLA-TW---- 344
Query: 250 NKGY-YVHLSTLAEVRDQILSYV-PVMARP----LVLQRNDHPIVWTPIYADVTDPKLSD 303
+ +V+ L + + L+ + P R L + I P L
Sbjct: 345 -DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI---P-------TILLS 393
Query: 304 WLWELKECEEQRE 316
+W +
Sbjct: 394 LIWFDVIKSDVMV 406
Score = 40.2 bits (93), Expect = 0.001
Identities = 43/294 (14%), Positives = 85/294 (28%), Gaps = 85/294 (28%)
Query: 118 DY-VNVLQFTSVCKEVVPCFADILVQ-ANLANVRELKMGV---EMIGDANNIANFTVALT 172
D+ Q+ K+++ F D V + +V+++ + E I +
Sbjct: 8 DFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 173 RAFNILENARNDKKTGADCNQAIMVVTDGASENYK-----------------EVFEEFNW 215
R F L + + V + NYK ++ E
Sbjct: 66 RLFWTLLSKQE--------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 216 RGQNDSTLWP-------------------VRVFSYLV-------GKEV--AD-YRDVKWM 246
R ND+ ++ +R ++ GK D K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 247 ACANKG-YYVHLSTLAEVRD--QILSYVPVMARPLVLQRNDHPIVWTPIYADVTDPKLSD 303
+ ++++L ++L + P R+DH + +L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRR 236
Query: 304 WLWELKECEEQRERSSYDQNSLRVSPYRLLTTVAMP----AFDRRPRIIVSIQD 353
L + K Y +N L V L V AF+ +I+++ +
Sbjct: 237 -LLKSK---------PY-ENCLLV-----LLNVQNAKAWNAFNLSCKILLTTRF 274
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting;
1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A
1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A
1u0o_C
Length = 202
Score = 38.8 bits (91), Expect = 0.001
Identities = 27/204 (13%), Positives = 67/204 (32%), Gaps = 39/204 (19%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL--GNNDY-VNVLQFTSVCKEVVPCFADIL 140
D+V LLD S + E+ + + ++++ L V V+++ + D
Sbjct: 15 DLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIG-LKDRK 73
Query: 141 ----VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIM 196
++ + V+ V + L + F+ + R + + +
Sbjct: 74 RPSELRRIASQVKYAGSQVASTSEV-----LKYTLFQIFS--KIDRPEAS------RIAL 120
Query: 197 VVTDGAS-----ENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANK 251
++ N+ + + V V +G A+ + ++ +
Sbjct: 121 LLMASQEPQRMSRNFVRYVQGLKKKK--------VIVIPVGIGPH-ANLKQIRLIEKQAP 171
Query: 252 GYYVHL----STLAEVRDQILSYV 271
+ L + RD+I+SY+
Sbjct: 172 ENKAFVLSSVDELEQQRDEIVSYL 195
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A
{Toxoplasma gondii}
Length = 178
Score = 36.9 bits (86), Expect = 0.004
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 18/127 (14%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL--GNNDY-VNVLQFTSVCKEVVPC--FAD 138
D+ L+D+SGS+ Q + + ++ L L G + V+ +++
Sbjct: 19 DICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQWDLQSPNA 78
Query: 139 ILVQANLANVRELK--MGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIM 196
+ Q V ++ G D F R + ++
Sbjct: 79 VDKQLAAHAVLDMPYKKGSTNTSDG-----LKACKQILFTGSRPGREHVP------KLVI 127
Query: 197 VVTDGAS 203
+TDG S
Sbjct: 128 GMTDGES 134
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP:
c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Length = 213
Score = 35.1 bits (81), Expect = 0.016
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 21/136 (15%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTL--GNNDY-VNVLQFTSVCKEVVPCFA 137
+ D+VI+LD S S+ + +N+LL + G V ++Q+
Sbjct: 6 TQLDIVIVLDGSNSI--YPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFN-LN 62
Query: 138 DIL----VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQ 193
V + + M A AF AR K +
Sbjct: 63 KYSSTEEVLVAAKKIVQRGGRQTMTALG-----TDTARKEAFTEARGARRGVK------K 111
Query: 194 AIMVVTDGASENYKEV 209
+++VTDG S + +
Sbjct: 112 VMVIVTDGESHDNHRL 127
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell
adhes glycoprotein, toxin-cell adhesion complex; HET:
NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A
1dzi_A
Length = 200
Score = 34.7 bits (80), Expect = 0.024
Identities = 21/131 (16%), Positives = 44/131 (33%), Gaps = 21/131 (16%)
Query: 80 ASPKDMVILLDNSGSMMGQRREIARHVINNLLDTL--GNNDY-VNVLQFTSVCKEVVPCF 136
S D+V++ D S S+ + ++ + + L G V ++Q+ + + V
Sbjct: 4 PSLIDVVVVCDESNSI--YPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFN-L 60
Query: 137 ADIL----VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCN 192
+ + + + A A A++ R
Sbjct: 61 NTYKTKEEMIVATSQTSQYGGDLTNTFGA-----IQYARKYAYSAASGGRRSAT------ 109
Query: 193 QAIMVVTDGAS 203
+ ++VVTDG S
Sbjct: 110 KVMVVVTDGES 120
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex,
immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Length = 223
Score = 34.0 bits (78), Expect = 0.047
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 17/134 (12%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTL--GNNDY-VNVLQFTSVCKEVVPCFA 137
+ D+VI+LD S S+ E +N+LL + G V ++Q+
Sbjct: 21 TQLDIVIVLDGSNSI--YPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFN-LN 77
Query: 138 DILVQANLAN-VRELKMGVEMIGDANNIAN-FTVALTRAFNILENARNDKKTGADCNQAI 195
+ ++ G A A AF AR K + +
Sbjct: 78 KYSSTEEVLVAANKIVQ---RGGRQTMTALGIDTARKEAFTEARGARRGVK------KVM 128
Query: 196 MVVTDGASENYKEV 209
++VTDG S + +
Sbjct: 129 VIVTDGESHDNYRL 142
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_A* 3k72_A*
Length = 1095
Score = 34.9 bits (79), Expect = 0.047
Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 33/254 (12%)
Query: 19 SNYQADPSLSWQVFGSTTGALRVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINA 78
N SL+ S + L P +++ R+
Sbjct: 69 VNMSLGLSLAST--TSPSQLLACGPTVHHECGRNMYLTGLCFLLGPTQLTQRLPVSRQEC 126
Query: 79 AASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNND-YVNVLQFTSVCKEVVPCFA 137
+D+V L+D SGS+ + + + ++ +++QF++ + F
Sbjct: 127 PRQEQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFT-FE 185
Query: 138 DIL----VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQ 193
+ + LA+V +L+ A + R F+ AR D +
Sbjct: 186 EFRRSSNPLSLLASVHQLQGFT-YTATA-----IQNVVHRLFHASYGARRDAA------K 233
Query: 194 AIMVVTDGAS----ENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVK-WMAC 248
++V+TDG +YK+V + G + ++ VG + K
Sbjct: 234 ILIVITDGKKEGDSLDYKDVIPMADAAG--------IIRYAIGVGLAFQNRNSWKELNDI 285
Query: 249 ANKGYYVHLSTLAE 262
A+K H+ + +
Sbjct: 286 ASKPSQEHIFKVED 299
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, tructural genomics;
1.80A {Alicyclobacillus acidocaldarius subsp}
Length = 242
Score = 32.4 bits (73), Expect = 0.18
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 78 AAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVP 134
+V+ LD S SM + R + +L +L V+V+ F +E
Sbjct: 130 EDEVALHLVVCLDTSASMRD-KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATR 188
Query: 135 CFADILVQANLAN-VRELKMG 154
+ N+A EL
Sbjct: 189 LVQPFSSEVNVAALEAELVAR 209
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 32.2 bits (72), Expect = 0.30
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 78 AAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTS-VCKEVVP 134
A P D+ L+D S SM + R + + LL L + + F S V K V+P
Sbjct: 128 AEGYPVDLYYLMDLSYSMKDDLERV-RQLGHALLVRLQEVTHSVRIGFGSFVDKTVLP 184
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown
function, uncharacterized protein; 1.50A {Vibrio
cholerae o1 biovar eltor str}
Length = 240
Score = 31.1 bits (70), Expect = 0.44
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 62 NMTDLYDCRVREWYINAAASPK 83
N +D RVR WY +A + K
Sbjct: 82 NPGPTWDPRVRPWYKDAKNAGK 103
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP:
b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Length = 497
Score = 31.4 bits (71), Expect = 0.49
Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY---VNVLQFTSVCKEVVPCFADIL 140
++ ++LD S S+ A+ V+ NL++ + + ++ + + K V
Sbjct: 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 62
Query: 141 VQAN--LANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTG-ADCNQAIMV 197
A+ + E+ + N AL ++++ + G I++
Sbjct: 63 SNADWVTKQLNEINYEDHKLKSGTNTKK---ALQAVYSMMSWPDDVPPEGWNRTRHVIIL 119
Query: 198 VTDGAS 203
+TDG
Sbjct: 120 MTDGLH 125
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 31.0 bits (69), Expect = 0.54
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 78 AAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFA 137
P D+ L+D S S M +++ L + + F + + V +
Sbjct: 107 VEDYPVDIYYLMDLSYS-MKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYM 165
Query: 138 DILVQANLAN 147
I L N
Sbjct: 166 YISPPEALEN 175
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 30.7 bits (69), Expect = 0.80
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 1 EEVLRVAKWSEALNDIFVSNYQADPSLSWQVFGSTTGALRVFPAHQWT 48
+ + + + N ADP W+V TTG V + WT
Sbjct: 85 SDTVDIPLMESFFAEQLKPNRDADPHKYWEVVDRTTG--EVVDSANWT 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.81
Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 30/134 (22%)
Query: 38 AL----RVFPAHQWTDFLDLFKPEGRTDNMTDLYDCRVREWYINAAASPKDMVILLDNSG 93
AL V +++ G T + D R Y A +P +
Sbjct: 1769 ALASLADVMS---IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS--- 1822
Query: 94 SMMGQRREIARHVINNLLDTLGN-----NDYVNV--LQFTSVC---KEVVPCFADILVQA 143
+E ++V+ + G N NV Q+ V + ++L
Sbjct: 1823 ------QEALQYVVERVGKRTGWLVEIVNY--NVENQQY--VAAGDLRALDTVTNVLNFI 1872
Query: 144 NLANVRELKMGVEM 157
L + +++ +
Sbjct: 1873 KLQKIDIIELQKSL 1886
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich,
fibronecti receptor, cell adhesion-immune system
complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB:
3vi4_B*
Length = 454
Score = 29.9 bits (66), Expect = 1.4
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 75 YINAAASPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTS-VCKEVV 133
+ A P D+ L+D S SM + + + +L++ + + F S V K V+
Sbjct: 115 FKRAEDYPIDLYYLMDLSYSMKDDLENV-KSLGTDLMNEMRRITSDFRIGFGSFVEKTVM 173
Query: 134 P 134
P
Sbjct: 174 P 174
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur
cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta
channel; HET: SAM LYS PLP; 2.10A {Clostridium
subterminale}
Length = 416
Score = 29.1 bits (65), Expect = 2.2
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 291 PIYADVTDPKLSDWLWELKEC 311
++ DV+D +DW W+++
Sbjct: 7 ELFKDVSDADWNDWRWQVRNR 27
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas,
admidas, membrane, integrin, titration, rossman fold,
cell adhesion, transmembrane; NMR {Mus musculus}
Length = 212
Score = 28.8 bits (64), Expect = 2.4
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGN 116
D+ L+ SGS + + ++LL L
Sbjct: 3 SVDLYFLMGLSGS-AQGHLSNVQTLGSDLLKALNE 36
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold,
signaling protein; HET: BTB; 1.70A {Methanosarcina
mazei} PDB: 3li8_A* 3lia_A*
Length = 291
Score = 28.9 bits (64), Expect = 2.6
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 11 EALNDIFVSNYQADPSLS--WQVF--GSTTGALRVFPAHQWTDFLDLFKP----EGRTDN 62
E I +P L + + + G + + D F P
Sbjct: 56 EEAMSIIKRILNENPQLIGVYLGYEPDAFDGRDKNYINAPGHDSTGRFVPYCNKINGPVI 115
Query: 63 MTDLYDCRVREWYINAAASPKDMVI 87
+ L ++Y + KD +
Sbjct: 116 IEPLVHYDSSDYYQLPKTTGKDTLT 140
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human
complement system, glycoprotein, SP, VWFA,; HET: NAG;
1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Length = 509
Score = 28.4 bits (63), Expect = 3.7
Identities = 29/175 (16%), Positives = 64/175 (36%), Gaps = 10/175 (5%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY---VNVLQFTSVCKEVVPCFADIL 140
++ +LLD S S+ I + + ++D + + + V ++ F S K ++ D
Sbjct: 11 NLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNS 70
Query: 141 VQAN--LANVRELKMGVEMIGDANNI-ANFTVALTRAFNILENARNDKKTGADCNQAIMV 197
++++ G N A N + + + AI++
Sbjct: 71 RDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIIL 130
Query: 198 VTDGAS---ENYKEVFEEF-NWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMAC 248
+TDG S + K + N + +++ VGK D+R++ +
Sbjct: 131 LTDGKSNMGGSPKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGS 185
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown
function, B-subunit binding, isomerase,
nucleotide-binding, topoisomerase; HET: DNA; 1.95A
{Myxococcus xanthus}
Length = 369
Score = 27.5 bits (62), Expect = 7.8
Identities = 8/40 (20%), Positives = 9/40 (22%), Gaps = 9/40 (22%)
Query: 161 ANNI---------ANFTVALTRAFNILENARNDKKTGADC 191
AN + T AL A L A
Sbjct: 257 ANAVRTVRHGAHVKGVTQALRGALAKLSGETRGAFPWARV 296
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein,
nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Length = 192
Score = 26.9 bits (59), Expect = 8.9
Identities = 29/194 (14%), Positives = 67/194 (34%), Gaps = 26/194 (13%)
Query: 86 VILLDNSGSMMGQ-----RREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADIL 140
+IL+DNS M+ R E + ++ + + N++ N+ ++ + +
Sbjct: 6 MILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTL- 64
Query: 141 VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTD 200
+ + + G+ A F + A L++ R +K Q I+
Sbjct: 65 -TRDYGKFLSAMHDLPVRGN----AKFGDGIQIAQLALKH-RENKIQR----QRIVAFVG 114
Query: 201 G-ASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLST 259
E+ K + +N+ V + +G+ + ++ AN HL +
Sbjct: 115 SPIVEDEKNLIRLAKRMKKNN-----VAIDIIHIGELQNESALQHFIDAANSSDSCHLVS 169
Query: 260 LAE----VRDQILS 269
+ + D +
Sbjct: 170 IPPSPQLLSDLVNQ 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,610,171
Number of extensions: 331709
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 36
Length of query: 354
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 259
Effective length of database: 4,049,298
Effective search space: 1048768182
Effective search space used: 1048768182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.5 bits)