RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10004
(354 letters)
>d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 209
Score = 58.5 bits (140), Expect = 9e-11
Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 21/204 (10%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADIL 140
++ ++LD S S+ A+ + NL++ + G ++ + + K V
Sbjct: 3 NIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEADS 62
Query: 141 VQAN--LANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGA-DCNQAIMV 197
A+ + E+ + N AL ++++ + G I++
Sbjct: 63 SNADWVTKQLNEINYEDHKLKSGTNTKK---ALQAVYSMMSWPDDVPPEGWNRTRHVIIL 119
Query: 198 VTDGAS------ENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEV-ADYRDVKWMA--C 248
+TDG + + + G++ + Y+ G + ++ +A
Sbjct: 120 MTDGLHNMGGDPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKK 179
Query: 249 ANKGYYVHL---STLAEVRDQILS 269
N+ + + L +V Q++
Sbjct: 180 DNEQHVFKVKDMENLEDVFYQMID 203
>d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 181
Score = 49.6 bits (117), Expect = 7e-08
Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 24/196 (12%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADI- 139
D+ +LD SGS+ EI V + ++ + F+S ++P D
Sbjct: 4 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIILPLTGDRG 63
Query: 140 -LVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVV 198
+ + R +G I + L N + K G + I+ +
Sbjct: 64 KISKGLEDLKRVSPVGETYIHEGLK--------------LANEQIQKAGGLKTSSIIIAL 109
Query: 199 TDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHLS 258
TDG + + E + V+ V + ++ +A + + +
Sbjct: 110 TDGKLDGLVPSYAEKEAKISRSL---GASVYCVGVLD--FEQAQLERIADSKEQVFPVKG 164
Query: 259 ---TLAEVRDQILSYV 271
L + + IL+
Sbjct: 165 GFQALKGIINSILAQS 180
>d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function
associated antigen-1, LFA-1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 179
Score = 49.1 bits (116), Expect = 1e-07
Identities = 25/195 (12%), Positives = 60/195 (30%), Gaps = 26/195 (13%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDY-VNVLQFTSVCKEVVPCFADIL 140
D+V L D S S+ + + +++ N Y +QF++ K +
Sbjct: 2 NVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTEFDFSDYVK 61
Query: 141 VQANLANVRELK--MGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVV 198
+ A ++ +K + + A T F AR D + ++++
Sbjct: 62 RKDPDALLKHVKHMLLLTNTFGA-----INYVATEVFREELGARPDAT------KVLIII 110
Query: 199 TDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHL- 257
TDG + + + + + + + A +V +
Sbjct: 111 TDGEATDSGNIDAA--------KDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKIL 162
Query: 258 ---STLAEVRDQILS 269
L ++ ++
Sbjct: 163 DTFEKLKDLCTELQK 177
>d1n3ya_ c.62.1.1 (A:) Integrin alpha-x beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 189
Score = 48.1 bits (113), Expect = 3e-07
Identities = 23/194 (11%), Positives = 62/194 (31%), Gaps = 13/194 (6%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADILV 141
+D+V L+D SGS+ + + + ++ L S + F +
Sbjct: 2 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHFTFEE--- 58
Query: 142 QANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTDG 201
+ + A+ + L +A + A ++V+TDG
Sbjct: 59 ---FRRSSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKI--LIVITDG 113
Query: 202 ASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHL---- 257
E +++ + + L + ++++ +A ++
Sbjct: 114 KKEGDSLDYKDVIPMADAAGII-RYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDF 172
Query: 258 STLAEVRDQILSYV 271
L ++++Q+ +
Sbjct: 173 DALKDIQNQLKEKI 186
>d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 47.9 bits (113), Expect = 3e-07
Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 27/197 (13%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFAD 138
P D+++LLD S S + + + V+VLQ+ S+ VP
Sbjct: 2 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWN-- 59
Query: 139 ILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVV 198
+ L V+++ + AL A L + + + G ++A++++
Sbjct: 60 -----VVPEKAHLLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPG--ASKAVVIL 112
Query: 199 TDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVH-- 256
S + + + + V VF +G D ++ +A V
Sbjct: 113 VTDVSVDSVDAAADAARSNR-------VTVFPIGIGDRY-DAAQLRILAGPAGDSNVVKL 164
Query: 257 -----LSTLAEVRDQIL 268
L T+ + + L
Sbjct: 165 QRIEDLPTMVTLGNSFL 181
>d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 202
Score = 45.7 bits (107), Expect = 2e-06
Identities = 25/197 (12%), Positives = 61/197 (30%), Gaps = 21/197 (10%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLG---NNDYVNVLQFTSVCKEVVPCFAD 138
D+V LLD S + E+ + + ++++ L V V+++ +
Sbjct: 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDR 72
Query: 139 ILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVV 198
++K + + + +T+ F I + +
Sbjct: 73 KRPSELRRIASQVKYAGSQVASTSEVLKYTL-----FQIFSKIDRPEASRIALLLMASQE 127
Query: 199 TDGASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHL- 257
S N+ + + V +G A+ + ++ + +
Sbjct: 128 PQRMSRNFVRYVQGLKKKKV--------IVIPVGIGPH-ANLKQIRLIEKQAPENKAFVL 178
Query: 258 ---STLAEVRDQILSYV 271
L + RD+I+SY+
Sbjct: 179 SSVDELEQQRDEIVSYL 195
>d1mf7a_ c.62.1.1 (A:) Integrin alpha M (CR3, CD11b/CD18, Mac-1
alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 194
Score = 45.4 bits (106), Expect = 2e-06
Identities = 25/193 (12%), Positives = 64/193 (33%), Gaps = 13/193 (6%)
Query: 81 SPKDMVILLDNSGSMMGQRREIARHVINNLLDTLGNNDYVNVLQFTSVCKEVVPCFADIL 140
D+ L+D SGS++ + ++ +++ L + + L S + F +
Sbjct: 4 EDSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIHFTFKE-- 61
Query: 141 VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTD 200
N + V+ I + + + L N N + + ++V+TD
Sbjct: 62 ----FQNNPNPRSLVKPITQLLGRTHTATGIRKVVRELFNITN--GARKNAFKILVVITD 115
Query: 201 GASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEVADYRDVKWMACANKGYYVHL--- 257
G +E+ + + + + +++ +A +V
Sbjct: 116 GEKFGDPLGYEDVIPEADREGVI-RYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNN 174
Query: 258 -STLAEVRDQILS 269
L +++Q+
Sbjct: 175 FEALKTIQNQLRE 187
>d1pt6a_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 192
Score = 41.4 bits (96), Expect = 5e-05
Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 20/194 (10%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADIL 140
D+VI+LD S S+ + +N+LL + V ++Q+
Sbjct: 3 DIVIVLDGSNSI--YPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSS 60
Query: 141 VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTD 200
+ L +++ AL E + + +++VTD
Sbjct: 61 TEEVLVAAKKIVQRGGR--------QTMTALGTDTARKEAFTEARGARRGVKKVMVIVTD 112
Query: 201 GASENYKEVFEEFNWRGQNDSTLWPVRV---FSYLVGKEVADYRDVKWMACANKGYYVHL 257
G S + + + + + + + ++ ++K +A +
Sbjct: 113 GESHDNHRLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFN 172
Query: 258 ----STLAEVRDQI 267
L + +
Sbjct: 173 VSDELALVTIVKTL 186
>d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 39.6 bits (91), Expect = 3e-04
Identities = 17/139 (12%), Positives = 43/139 (30%), Gaps = 12/139 (8%)
Query: 86 VILLDNSGSMMGQ------RREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCF 136
V+ +D +M E A+ VI + N D + ++ F + +
Sbjct: 6 VLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSG 65
Query: 137 ADILVQANL---ANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQ 193
D + + + + ++ + L ++ +++ +
Sbjct: 66 GDQYQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKR 125
Query: 194 AIMVVTDGASENYKEVFEE 212
I + TD +S K +
Sbjct: 126 HIEIFTDLSSRFSKSQLDI 144
>d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 220
Score = 36.9 bits (84), Expect = 0.002
Identities = 18/143 (12%), Positives = 49/143 (34%), Gaps = 30/143 (20%)
Query: 85 MVILLDNSGSMMGQ-------RREIARHVINNLLDTL---GNNDYVNVLQFTS------- 127
++ L+D S +M +++ I ++ + + D + V+ + +
Sbjct: 5 LIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSV 64
Query: 128 -------VCKEVVPCFADILVQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILEN 180
+ + P IL + K +M+G + + + L N+ +
Sbjct: 65 NFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMG-HGSDYSLSEVLWVCANLFSD 123
Query: 181 ARNDKKTGADCNQAIMVVTDGAS 203
+ ++ IM+ T+ +
Sbjct: 124 VQFKMS-----HKRIMLFTNEDN 141
>d1v7pc_ c.62.1.1 (C:) Integrin alpha2-beta1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 193
Score = 35.6 bits (81), Expect = 0.005
Identities = 28/194 (14%), Positives = 67/194 (34%), Gaps = 20/194 (10%)
Query: 84 DMVILLDNSGSMMGQRREIARHVINNLLDTL---GNNDYVNVLQFTSVCKEVVPCFADIL 140
D+V++ D S S+ + ++ + + L V ++Q+ + + V
Sbjct: 3 DVVVVCDESNSI--YPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKT 60
Query: 141 VQANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGADCNQAIMVVTD 200
+ + + ++ N A+ A +A + + A ++VVTD
Sbjct: 61 KEEMIVATSQTSQ------YGGDLTNTFGAIQYARKYAYSAASGGRRSATKV--MVVVTD 112
Query: 201 GASENYKEVFEEFNWRGQNDSTLWPVRVFSYLVGKEV---ADYRDVKWMACANKGYYVHL 257
G S + + + ++ + + V YL + +++K +A Y
Sbjct: 113 GESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFN 172
Query: 258 ----STLAEVRDQI 267
+ L E +
Sbjct: 173 VSDEAALLEKAGTL 186
>d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein,
RoRNP {African clawed frog (Xenopus laevis) [TaxId:
8355]}
Length = 174
Score = 32.1 bits (72), Expect = 0.048
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 80 ASPKDMVILLDNSGSM----MGQRREIARHVINNLLDTLGNNDYVNVLQFTS 127
+ K ++ +D S SM +G + + +++ F+
Sbjct: 3 PTGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSD 54
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 28.5 bits (63), Expect = 1.2
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 82 PKDMVILLDNSGSMMGQRREIARHVINNLLDTLGN 116
P D+ L+D S S M +++ L +
Sbjct: 5 PVDIYYLMDLSYS-MKDDLWSIQNLGTKLATQMRK 38
>d1vh6a_ a.24.19.1 (A:) Flagellar export chaperone FliS {Bacillus
subtilis [TaxId: 1423]}
Length = 102
Score = 25.5 bits (56), Expect = 4.9
Identities = 5/43 (11%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 148 VRELKMGVEMIGDANNIANFTVALTRAFNILENARNDKKTGAD 190
++ +++ + I + +++ L +A NI++ +
Sbjct: 15 LKFIRLAAQAI-ENDDMERKNENLIKAQNIIQELNFTLNRNIE 56
>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit,
IlvH {Escherichia coli [TaxId: 562]}
Length = 86
Score = 24.6 bits (54), Expect = 6.8
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 142 QANLANVRELKMGVEMIGDANNIANFTVALTRAFNILENAR 182
+ + +V V++ G + + F ++ I+E AR
Sbjct: 32 RGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVAR 72
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.413
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,360,677
Number of extensions: 62783
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 18
Length of query: 354
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 268
Effective length of database: 1,226,816
Effective search space: 328786688
Effective search space used: 328786688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)