BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10005
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 106/113 (93%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
+ PA ++FP DYPLSPPKM+FTCEMFHPNIY DGRVCISILHAPGDDPMGYESS+ERWSP
Sbjct: 58 VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 117
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
VQSVEKILLSVVSMLAEPNDESGANVDA+KMWR+DRE+F K A ++V+K+LGL
Sbjct: 118 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 170
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 106/113 (93%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
+ PA ++FP DYPLSPPKM+FTCEMFHPNIY DGRVCISILHAPGDDPMGYESS+ERWSP
Sbjct: 55 VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 114
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
VQSVEKILLSVVSMLAEPNDESGANVDA+KMWR+DRE+F K A ++V+K+LGL
Sbjct: 115 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 167
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 204 bits (519), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 106/113 (93%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
+ PA ++FP DYPLSPPKM+FTCEMFHPNIY DGRVCISILHAPGDDPMGYESS+ERWSP
Sbjct: 56 VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 115
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
VQSVEKILLSVVSMLAEPNDESGANVDA+KMWR+DRE+F K A ++V+K+LGL
Sbjct: 116 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 168
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 204 bits (518), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 94/113 (83%), Positives = 106/113 (93%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
+ PA ++FP DYPLSPPKM+FTCEMFHPNIY DGRVCISILHAPGDDPMGYESS+ERWSP
Sbjct: 52 VFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSP 111
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
VQSVEKILLSVVSMLAEPNDESGANVDA+KMWR+DRE+F K A ++V+K+LGL
Sbjct: 112 VQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 156 bits (395), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 89/115 (77%)
Query: 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERW 61
D + AK+ FP DYPLSPPK+ FT + HPNIY +G VCISILH+PGDDP YE + ERW
Sbjct: 51 DGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERW 110
Query: 62 SPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
SPVQSVEKILLSV+SML+EPN ESGAN+DA +WR++R EF ++ + K+LG
Sbjct: 111 SPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLGF 165
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 78/107 (72%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A + FP DYP PPKM+F E++HPNI +G VCISILH PGDD GYE ERW PV +
Sbjct: 55 AILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHT 114
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
VE ILLSV+SML +PN ES ANVDAAKM RE+ EF K+ + VR++
Sbjct: 115 VETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 134 bits (337), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A +TFP DYPL PPKM+F E++HPN+ +G VCISILH PG+D GYE ERW P+ +
Sbjct: 69 AHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHT 128
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDRE-EFNKRANK 108
VE I++SV+SMLA+PN +S ANVDAAK WREDR EF ++ +
Sbjct: 129 VETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 171
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 115 bits (289), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A++ FP DYP SPP +F +M+HPNIY G VCISILH P DDP E SERW+P Q+
Sbjct: 59 ARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQN 118
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNK--RANKLVRKTL 114
V ILLSV+S+L EPN S ANVDA+ M+R+ +E K ++RK +
Sbjct: 119 VRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 168
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 115 bits (289), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A++ FP DYP SPP +F +M+HPNIY G VCISILH P DDP E SERW+P Q+
Sbjct: 56 ARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQN 115
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNK--RANKLVRKTL 114
V ILLSV+S+L EPN S ANVDA+ M+R+ +E K ++RK +
Sbjct: 116 VRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 165
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 13/109 (11%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ F DYP PP ++F MFHPNIYADG +C+ IL +WSP+ V
Sbjct: 57 LQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVA 103
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGLD 117
IL S+ S+L +PN S AN +AA+M+ E + E+N+R +V ++ D
Sbjct: 104 AILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 89.7 bits (221), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ F +YP PP ++F +MFHPN+YADG +C+ IL RWSP V
Sbjct: 57 LEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-------------NRWSPTYDVA 103
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
IL S+ S+L EPN S AN AA++++E+R E+ KR ++V ++
Sbjct: 104 AILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 148
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ F +YP PP ++F +MFHPN+YADG +C+ IL RWSP V
Sbjct: 60 LEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-------------NRWSPTYDVA 106
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
IL S+ S+L EPN S AN AA++++E+R E+ KR ++V ++
Sbjct: 107 AILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 151
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ F +YP PP ++F +MFHPN+YADG +C+ IL RWSP V
Sbjct: 57 IEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ-------------NRWSPTYDVS 103
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
IL S+ S+L EPN S AN AA++++E++ E+ KR + +V ++
Sbjct: 104 SILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
V FP+DYP PPK+ FT +++HPNI ++G +C+ IL + +WSP +V
Sbjct: 60 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRS-------------QWSPALTVS 106
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + D A++++ D+E++N+ A + +K
Sbjct: 107 KVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
V FP+DYP PPK+ FT +++HPNI ++G +C+ IL + +WSP +V
Sbjct: 72 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRS-------------QWSPALTVS 118
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + D A++++ D+E++N+ A + +K
Sbjct: 119 KVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 162
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 65/104 (62%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
V FP+DYP PPK+ FT +++HPNI ++G +C+ IL + +WSP +V
Sbjct: 56 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRS-------------QWSPALTVS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + D A++++ D+E++N+ A + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 146
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 85.1 bits (209), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT +++HPNI ++G +C+ IL + +WSP +V
Sbjct: 59 IHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRS-------------QWSPALTVS 105
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + D A +++ D+E++N+ A + +K
Sbjct: 106 KVLLSICSLLCDPNPDDPLVPDIAHIYKSDKEKYNRLAREWTQK 149
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 72 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 118
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 119 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 59 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 105
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 106 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 149
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 100
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 101 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 103
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE +N+ A + +K
Sbjct: 104 KVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 147
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 64 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 110
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 111 KVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQK 154
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +W P ++
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWGPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
V FP+DYP PPK+ FT +++HPNI ++G + + IL + +WSP +V
Sbjct: 60 VHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRS-------------QWSPALTVS 106
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + D A++++ D+E++N+ A + +K
Sbjct: 107 KVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQK 150
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 82.4 bits (202), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 60/105 (57%), Gaps = 13/105 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ F +YP PP ++F EMFHPN+YA+G +C+ IL RW+P V
Sbjct: 57 LEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYDVA 103
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
IL S+ S+ +PN S ANV+AA ++++ + ++ KR + V K+
Sbjct: 104 SILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKS 148
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ L + +WSP ++
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRS-------------QWSPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 53 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 99
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DR+++N+ + + +K
Sbjct: 100 KVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 143
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 62 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 108
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DR+++N+ + + +K
Sbjct: 109 KVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 152
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DR+++N+ + + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 146
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 64/104 (61%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL + +WSP ++
Sbjct: 64 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS-------------QWSPALTIS 110
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DR+++N+ + + +K
Sbjct: 111 KVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 154
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 11/104 (10%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP +YP PPK +FT +FHPN+Y G VC+SIL+ E W P +++
Sbjct: 68 MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAITIK 116
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ILL + +L +PN S A +A M+++D+ E+ KR R+
Sbjct: 117 QILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARE 160
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G + + IL + +WSP ++
Sbjct: 57 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRS-------------QWSPALTIS 103
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 104 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 147
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G + + IL + +WSP ++
Sbjct: 56 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRS-------------QWSPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 103 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 146
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G + + IL + +WSP ++
Sbjct: 72 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRS-------------QWSPALTIS 118
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 119 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL ++WSP ++
Sbjct: 54 IHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTIS 100
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A +++ DR + A + RK
Sbjct: 101 KVLLSISSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRK 144
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 79.3 bits (194), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G + + IL + +WSP +
Sbjct: 53 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRS-------------QWSPALKIS 99
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 100 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 143
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FPSDYP PPK+ FT +++HPNI + G +C+ IL ++WSP ++
Sbjct: 74 IHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDIL-------------KDQWSPALTIS 120
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A +++ DR +++ A + +K
Sbjct: 121 KVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQK 164
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 63/104 (60%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HPNI ++G + + IL + +WSP ++
Sbjct: 54 IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRS-------------QWSPALTIS 100
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DR+++N+ + + +K
Sbjct: 101 KVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQK 144
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT +++HPNI A+G +C+ IL ++WSP ++
Sbjct: 55 IHFPTDYPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLS 101
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L + N + + A +++ DR ++ A + +K
Sbjct: 102 KVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKK 145
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP+DYP PPK+ FT ++HP I ++G + + IL + +WSP ++
Sbjct: 54 IHFPTDYPFKPPKVAFTTRIYHPAINSNGSISLDILRS-------------QWSPALTIS 100
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 101 KVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 144
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 112
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN +S A +A ++ ++R E+ KR +K
Sbjct: 113 KQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 75.9 bits (185), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 112
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN ++ A +A ++ ++R E+ KR +K
Sbjct: 113 KQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 62 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 110
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 111 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 155
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 66 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 114
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 115 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 159
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 75.1 bits (183), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 111
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 112 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 156
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 63 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 111
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 112 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 156
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 112
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 113 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 75.1 bits (183), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G VC+SIL D W P ++
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKD-----------WRPAITI 109
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 110 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 154
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHP +Y G VC+SIL D W P ++
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKD-----------WRPAITI 112
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 113 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 60/105 (57%), Gaps = 12/105 (11%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ FP++YP PPK+ F +++HPNI G+VC+ ++ S+E W P
Sbjct: 56 EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI------------SAENWKPATKT 103
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++++ S+++++ +P E D A+ + +DR++F K A + +K
Sbjct: 104 DQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 148
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 59/104 (56%), Gaps = 12/104 (11%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP++YP PPK+ F +++HPNI G+VC+ ++ S+E W P +
Sbjct: 55 INFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVI------------SAENWKPATKTD 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+++ S+++++ +P E D A+ + +DR++F K A + +K
Sbjct: 103 QVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 72.0 bits (175), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G V +SIL D W P ++
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKD-----------WRPAITI 109
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 110 KQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKK 154
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 11 FPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKI 70
FPSDYP PP ++FT +HPN+ G +C+ IL E W+ V I
Sbjct: 64 FPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDIL-------------KENWTASYDVRTI 110
Query: 71 LLSVVSMLAEPNDESGANVDAAKMWREDRE 100
LLS+ S+L EPN+ S N AA MW E
Sbjct: 111 LLSLQSLLGEPNNASPLNAQAADMWSNQTE 140
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+ G VC+SIL D W P ++
Sbjct: 64 RMLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKD-----------WRPAITI 112
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 113 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 11/105 (10%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ F DYP SPPK +F +FHPN+Y G V +SIL D W P ++
Sbjct: 61 RMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKD-----------WRPAITI 109
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 110 KQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 154
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 13/102 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
K+ D+P SPPK F ++FHPN+ A+G +C+++L W+ +
Sbjct: 65 KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVL-------------KRDWTAELGI 111
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKL 109
+LL++ +L PN ES N +A ++ E+ EE+ RA L
Sbjct: 112 RHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLL 153
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
+ P V +P++YP PPK++F +HPN+Y G +C+SIL+ D W P
Sbjct: 59 VYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD-----------WRP 107
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKR 105
++++I+L V +L PN S A A + + ++ E++K+
Sbjct: 108 AITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKK 149
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
+ P V +P++YP PPK++F +HPN+Y G +C+SIL+ D W P
Sbjct: 57 VYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQD-----------WRP 105
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKR 105
++++I+L V +L PN S A A + + ++ E++K+
Sbjct: 106 AITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKK 147
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
V FP DYP P++ F +++HPNI +G +C+ IL ++WSP ++
Sbjct: 57 VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDIL-------------KDQWSPALTLS 103
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
++LLS+ S+L +PN + + A + R ++++F A + R
Sbjct: 104 RVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTR 146
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 14/99 (14%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYAD-GRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+T P+DYP +PPK++F +++HPNI + G +C+ +L WSP ++
Sbjct: 76 ITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVL-------------KNEWSPALTI 122
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRA 106
LLS+ ++L++P + + + AKM++E+ F K A
Sbjct: 123 RTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTA 161
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 56/106 (52%), Gaps = 18/106 (16%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ P +YP PPKMQF +++HPNI + G +C+ IL WSPV ++
Sbjct: 55 IEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITL 101
Query: 68 EKILLSVVSMLA--EPNDESGANVDAAKMWREDREEFNKRANKLVR 111
+ L+S+ ++L EPND A V A+ + DRE FNK A R
Sbjct: 102 KSALISLQALLQSPEPNDPQDAEV--AQHYLRDRESFNKTAALWTR 145
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 18/101 (17%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ P +YP PPKMQF +++HPNI + G +C+ IL WSPV ++
Sbjct: 56 IEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR-------------NAWSPVITL 102
Query: 68 EKILLSVVSMLA--EPNDESGANVDAAKMWREDREEFNKRA 106
+ L+S+ ++L EPND A V A+ + DRE FNK A
Sbjct: 103 KSALISLQALLQSPEPNDPQDAEV--AQHYLRDRESFNKTA 141
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 11 FPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKI 70
FPS YP + P ++F +HPN+ G + + IL E+WS + V I
Sbjct: 85 FPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDIL-------------KEKWSALYDVRTI 131
Query: 71 LLSVVSMLAEPNDESGANVDAAKMWR 96
LLS+ S+L EPN +S N AA++W+
Sbjct: 132 LLSIQSLLGEPNIDSPLNTHAAELWK 157
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+++FP +YP PP ++FT +++HPN+ +G++C+ I+ SSE W P
Sbjct: 56 RISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII------------SSENWKPCTKT 103
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGLD 117
++L ++ ++ PN +D A + ++ E F K A + + G+D
Sbjct: 104 CQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLR-FGVD 152
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+++FP +YP PP ++FT +++HPN+ +G++C+ I+ SSE W P
Sbjct: 53 RISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPII------------SSENWKPCTKT 100
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGLD 117
++L ++ ++ PN +D A + ++ E F K A + + G+D
Sbjct: 101 CQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLR-FGVD 149
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P +YP++ PK++F +++HPN+ GR+C+ IL ++WSP +
Sbjct: 60 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQI 106
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
+LLS+ ++L+ PN + D A+ W+ + + + A R
Sbjct: 107 RTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR 150
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P +YP++ PK++F +++HPN+ GR+C+ IL ++WSP +
Sbjct: 58 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQI 104
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
+LLS+ ++L+ PN + D A+ W+ + + + A R
Sbjct: 105 RTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR 148
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 13/101 (12%)
Query: 11 FPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKI 70
P +YP++ PK++F +++HPN+ GR+C+ IL ++WSP + +
Sbjct: 60 LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQIRTV 106
Query: 71 LLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
LLS+ ++L+ PN + D A+ W+ + + + A R
Sbjct: 107 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR 147
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P +YP++ PK++F +++HPN+ GR+C+ IL ++WSP +
Sbjct: 53 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQI 99
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
+LLS+ ++L+ PN + D A+ W+ + + + A R
Sbjct: 100 RTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR 143
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P +YP++ PK++F +++HPN+ GR+C+ IL ++WSP +
Sbjct: 55 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDIL-------------KDKWSPALQI 101
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
+LLS+ ++L+ PN + D A+ W+ + + + A R
Sbjct: 102 RTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTR 145
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERW 61
D I ++ P DYP+ PK++F +++HPNI GR+C+ +L W
Sbjct: 51 DGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKT-------------NW 97
Query: 62 SPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
SP + +LLS+ ++LA PN D A+ W ++ + +A + +
Sbjct: 98 SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 147
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERW 61
D I ++ P DYP+ PK++F +++HPNI GR+C+ +L W
Sbjct: 49 DGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKT-------------NW 95
Query: 62 SPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
SP + +LLS+ ++LA PN D A+ W ++ + +A + +
Sbjct: 96 SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 145
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYAD-GRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ P DYP +PPKM+F +++HPNI + G +C+ IL WSP ++
Sbjct: 98 IVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDIL-------------KHEWSPALTI 144
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRAN 107
LLS+ +MLA+P + + AKM E+ F + A
Sbjct: 145 RTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK 184
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 16/105 (15%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P YP+ PPK++F +++HPNI GR+C+ IL ++WSP +
Sbjct: 53 ELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQI 99
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDR---EEFNKRANKL 109
+LLS+ ++L+ P + + A+ +++D+ E ++ NK+
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKI 144
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 16/105 (15%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P YP+ PPK++F +++HPNI GR+C+ IL ++WSP +
Sbjct: 53 ELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQI 99
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDR---EEFNKRANKL 109
+LLS+ ++L+ P + + A+ +++D+ E ++ NK+
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKI 144
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+TF DYP PPK+ F ++H NI + G +C+ IL + WSP ++
Sbjct: 56 ITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK-------------DNWSPALTIS 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L + N A + +R E ++ A + ++
Sbjct: 103 KVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 146
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+V P YP PP+++F ++HPNI + GR+C+ +L P P G W P ++
Sbjct: 56 EVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLP---PKGA------WRPSLNI 106
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+L S+ +++EPN + D + ++ ++ F K A + K
Sbjct: 107 ATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 151
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ F YP+ PPK+ ++FHPNI G VC++IL E WSP ++
Sbjct: 86 LDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILR-------------EDWSPALDLQ 132
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEF 102
I+ ++ + EPN N DAAK+ E +EF
Sbjct: 133 SIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEF 166
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 59.7 bits (143), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+TF +YP PPK+ F ++H NI + G +C+ IL + WSP ++
Sbjct: 101 ITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK-------------DNWSPALTIS 147
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L + N A + +R E ++ A + ++
Sbjct: 148 KVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 191
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERW 61
D I ++ P DYP+ PK++F +++HPNI GR+ + +L W
Sbjct: 49 DGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRISLDVLKT-------------NW 95
Query: 62 SPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
SP + +LLS+ ++LA PN D A+ W ++ + +A + +
Sbjct: 96 SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 145
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 15 YPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSV 74
YP PPK++ ++HPNI +G VC++IL E W PV ++ I+ +
Sbjct: 63 YPHDPPKVKCETXVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGL 109
Query: 75 VSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
+ EPN E N +AA++ + +R F + + R
Sbjct: 110 QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSXR 146
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 13/110 (11%)
Query: 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERW 61
D I ++ P DYP+ PK++F +++HP I GR+ + +L W
Sbjct: 49 DGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLGRISLDVLKT-------------NW 95
Query: 62 SPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
SP + +LLS+ ++LA PN D A+ W ++ + +A + +
Sbjct: 96 SPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTK 145
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 15/71 (21%)
Query: 11 FPSDYPLSPPKMQFTCEMF--HPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
F S YP P++ FT E HP++Y++G +C+SIL +E WSP SV+
Sbjct: 79 FSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL-------------TEDWSPALSVQ 125
Query: 69 KILLSVVSMLA 79
+ LS++SML+
Sbjct: 126 SVCLSIISMLS 136
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 15 YPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSV 74
YP PPK++ ++HPNI +G V ++IL E W PV ++ I+ +
Sbjct: 83 YPHDPPKVKCETMVYHPNIDLEGNVALNILR-------------EDWKPVLTINSIIYGL 129
Query: 75 VSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
+ EPN E N +AA++ + +R F + + +R
Sbjct: 130 QYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 166
>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 167
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 12 PSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKIL 71
P Y + PPK++ +++HPNI G +C+S+L D G W+P ++++ ++
Sbjct: 70 PDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVV 122
Query: 72 LSVVSMLAE-PNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ S+ + N + N++AA+ D+E+F + + +++
Sbjct: 123 WGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8-
Conjugating Enzyme Nce2
Length = 173
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 8/102 (7%)
Query: 12 PSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKIL 71
P Y + PPK++ +++HPNI G +C+S+L D G W+P ++++ ++
Sbjct: 70 PDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVV 122
Query: 72 LSVVSMLAE-PNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ S+ + N + N++AA+ D+E+F + + +++
Sbjct: 123 WGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWS 62
I VT P DYP + P + F ++ HPN+ A G VC+ +++ + W+
Sbjct: 47 IWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN-------------QTWT 93
Query: 63 PVQSVEKIL-LSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
P+ S+ + + + +L PN N DAA + +D+ + ++ + V+
Sbjct: 94 PLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVK 143
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 14/81 (17%)
Query: 9 VTFPSDYPLSPPKMQFTCE-----MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
V FP DYP SPP + F+PN+Y DG+VC+SIL+ P E+W+P
Sbjct: 133 VYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRP------EEKWNP 186
Query: 64 -VQSVEKILLSVVSML--AEP 81
S ++L+SV S++ AEP
Sbjct: 187 QTSSFLQVLVSVQSLILVAEP 207
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+V P YP P + F ++FHPNI A G VC+ ++ ++ W+ +
Sbjct: 72 VRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVI-------------NQTWTALY 118
Query: 66 SVEKILLSVV-SMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ I S + +LA PN N DAA M+ EE+ ++ + ++K
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQK 166
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 8 KVTFPSDYPLSPPKMQFTCE-MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
K+ FP DYPL PP + F + H ++Y++G +C+S+L GDD ++P S
Sbjct: 58 KIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLL---GDD----------YNPSLS 104
Query: 67 VEKILLSVVSMLA 79
+ ++LS++SML+
Sbjct: 105 ISGLVLSIISMLS 117
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 14/73 (19%)
Query: 8 KVTFPSDYPLSPPKMQFTCE-MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
K+ FP +YPL PP + F + H ++Y++G +C+S+L GDD ++P S
Sbjct: 72 KIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVL---GDD----------YNPSLS 118
Query: 67 VEKILLSVVSMLA 79
+ ++LS++SML+
Sbjct: 119 ISGLILSIISMLS 131
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
V PSDYP P + F + HPN+ G VC+ ++ ++ W+P+
Sbjct: 60 HVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVI-------------NQTWTPMYQ 106
Query: 67 VEKIL-LSVVSMLAEPNDESGANVDAAKMWREDREEFN 103
+E I + + +L PN NV AA + DR F+
Sbjct: 107 LENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFD 144
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 12/95 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ F S+Y +PP ++F FHPN+ G+ CI L P E+W+ ++
Sbjct: 76 IHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNP-----------EKWNTNYTL 124
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEF 102
ILL++ ML+ P E+ N++AA++ +D +
Sbjct: 125 SSILLALQVMLSNPVLENPVNLEAARILVKDESLY 159
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 9 VTFPSDYPLSPPKMQF-TCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ PS YP++PPK+ F + H N+ A G +C++IL E W+PV
Sbjct: 71 IEVPSSYPMNPPKISFMQNNILHSNVKSATGEICLNIL------------KPEEWTPVWD 118
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWR 96
+ + +V +L EP +S +VD + R
Sbjct: 119 LLHCVHAVWRLLREPVSDSPLDVDIGNIIR 148
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 9 VTFPSDYPLSPPKMQF-TCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ PS YP++PPK+ F + H N+ A G +C++IL E W+PV
Sbjct: 71 IEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNIL------------KPEEWTPVWD 118
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWR 96
+ + +V +L EP +S +VD + R
Sbjct: 119 LLHCVHAVWRLLREPVCDSPLDVDIGNIIR 148
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 9 VTFPSDYPLSPPKMQF-TCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ PS YP++PPK+ F + H N+ A G +C++IL E W+PV
Sbjct: 71 IEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNIL------------KPEEWTPVWD 118
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWR 96
+ + +V +L EP +S +VD + R
Sbjct: 119 LLHCVHAVWRLLREPVCDSPLDVDIGAIIR 148
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISIL 44
++ P YP +PPK++F +++HPNI + G +C+ IL
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 149
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISIL 44
++ P YP +PPK++F +++HPNI + G +C+ IL
Sbjct: 76 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 113
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISIL 44
++ P YP +PPK++F +++HPNI + G +C+ IL
Sbjct: 61 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 98
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISIL 44
++ P YP +PPK++F +++HPNI + G +C+ IL
Sbjct: 60 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 97
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISIL 44
++ P YP +PPK++F +++HPNI + G +C+ IL
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL 100
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPN--IYADGRVCISILHAPGDDPMGYESSSERWSPV 64
K+ FP ++P PP + M PN + R+C+SI D W+P
Sbjct: 65 GKLIFPREFPFKPPSIY----MITPNGRFKCNTRLCLSITDFHPDT----------WNPA 110
Query: 65 QSVEKILLSVVSMLAEPNDESGA 87
SV IL ++S + E G+
Sbjct: 111 WSVSTILTGLLSFMVEKGPTLGS 133
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVC 40
V F DYP PP ++F ++ P + +G +C
Sbjct: 75 VLFSDDYPHEPPTVRFVTPVYSPLVTGEGGIC 106
>pdb|4EMY|A Chain A, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|B Chain B, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|C Chain C, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548.
pdb|4EMY|D Chain D, Crystal Structure Of Aminotransferase From Anaerococcus
Prevotii Dsm 20548
Length = 413
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 42 SILHAPGDDPMGYESSSERWSPV 64
S++++PG++P GY S E W V
Sbjct: 182 SLINSPGNNPTGYSLSDEEWDEV 204
>pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|B Chain B, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|C Chain C, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
pdb|3II0|D Chain D, Crystal Structure Of Human Glutamate Oxaloacetate
Transaminase 1 (Got1)
Length = 422
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 41 ISILHAPGDDPMGYESSSERWSPVQSVEK 69
I +LHA +P G + + E+W + SV K
Sbjct: 174 IVVLHACAHNPTGIDPTPEQWKQIASVMK 202
>pdb|3RQ1|A Chain A, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|B Chain B, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|C Chain C, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
pdb|3RQ1|D Chain D, Crystal Structure Of Aminotransferase Class I And Ii From
Veillonella Parvula
Length = 418
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 41 ISILHAPGDDPMGYESSSERWSPVQSVEKILLSV 74
+ I + PG++P GY + W + + K L+++
Sbjct: 182 VVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAI 215
>pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 41 ISILHAPGDDPMGYESSSERWSPVQSVEK 69
I +LHA +P G + + E+W + SV K
Sbjct: 185 IFVLHACAHNPTGTDPTPEQWKQIASVMK 213
>pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJR|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
pdb|1AJS|B Chain B, Refinement And Comparison Of The Crystal Structures Of Pig
Cytosolic Aspartate Aminotransferase And Its Complex
With 2-Methylaspartate
Length = 412
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 41 ISILHAPGDDPMGYESSSERWSPVQSVEK 69
I +LHA +P G + + E+W + SV K
Sbjct: 185 IFVLHACAHNPTGTDPTPEQWKQIASVMK 213
>pdb|1F07|A Chain A, Structure Of Coenzyme F420 Dependent
Tetrahydromethanopterin Reductase From Methanobacterium
Thermoautotrophicum
pdb|1F07|B Chain B, Structure Of Coenzyme F420 Dependent
Tetrahydromethanopterin Reductase From Methanobacterium
Thermoautotrophicum
pdb|1F07|C Chain C, Structure Of Coenzyme F420 Dependent
Tetrahydromethanopterin Reductase From Methanobacterium
Thermoautotrophicum
pdb|1F07|D Chain D, Structure Of Coenzyme F420 Dependent
Tetrahydromethanopterin Reductase From Methanobacterium
Thermoautotrophicum
Length = 321
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 35 ADGRVCISILHAPGDDPMGYESSSERW-SPVQSVEKILLSVVSMLAEPNDESGANVDAAK 93
++GR + I PGD +++ W PV ++ + + ++LA ESGA + K
Sbjct: 84 SNGRATLGI--GPGDKAT-FDALGIEWVKPVSTIRDAIAMMRTLLAGEKTESGAQLMGVK 140
Query: 94 MWREDREEFNKRANKLVRKTLG 115
+E + ++ KT G
Sbjct: 141 AVQEKIPIYMGAQGPMMLKTAG 162
>pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase
From Leishmania Major Friedlin
pdb|4H51|B Chain B, Crystal Structure Of A Putative Aspartate Aminotransferase
From Leishmania Major Friedlin
Length = 420
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 19 PPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
P + E +I A + ILH +P G + S E+W+ + S+
Sbjct: 170 PKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASL 218
>pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|7AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|A Chain A, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|8AAT|B Chain B, X-ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|9AAT|B Chain B, X-Ray Structure Refinement And Comparison Of Three Forms
Of Mitochondrial Aspartate Aminotransferase
pdb|1TAR|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAR|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAS|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|A Chain A, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1TAT|B Chain B, Crystalline Mitochondrial Aspartate Aminotransferase
Exists In Only Two Conformations
pdb|1OXO|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1OXO|B Chain B, Aspartate Aminotransferase, H-Asp Complex, Open
Conformation
pdb|1IVR|A Chain A, Structure Of Aspartate Aminotransferase
pdb|1AMA|A Chain A, Domain Closure In Mitochondrial Aspartate Aminotransferase
pdb|1MAP|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1MAQ|A Chain A, Crystal Structures Of True Enzymatic Reaction
Intermediates: Aspartate And Glutamate Ketimines In
Aspartate Aminotransferase
pdb|1OXP|A Chain A, Aspartate Aminotransferase, H-Asp Complex, Closed
Conformation
Length = 401
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 41 ISILHAPGDDPMGYESSSERWSPVQSV--EKILLSVVSMLAEPNDESGANVDA 91
I +LHA +P G + E+W + SV ++ LL+ M + N DA
Sbjct: 177 IILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDA 229
>pdb|3R3Q|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain
pdb|3R42|A Chain A, Crystal Structure Of The Yeast Vps23 Uev Domain In Complex
With A Vps27 Psdp Peptide
Length = 162
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPN-----------IYADGRVCISILHA 46
P + PS YP+ PP + E F N I ++G + + ILHA
Sbjct: 84 PVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILHA 135
>pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKA|B Chain B, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKB|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate-Binding Lysine Residue
pdb|1AKC|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate
Aminotransferase K258h Lacking Its
Pyridoxal-5'-Phosphate- Binding Lysine Residue
Length = 401
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 41 ISILHAPGDDPMGYESSSERWSPVQSV--EKILLSVVSMLAEPNDESGANVDA 91
I +LHA +P G + E+W + SV ++ LL+ M + N DA
Sbjct: 177 IILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDA 229
>pdb|3R06|B Chain B, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|D Chain D, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|F Chain F, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R06|H Chain H, Crystal Structure Of Anti-Mouse Cd3epsilon Antibody 2c11
Fab Fragment
pdb|3R08|H Chain H, Crystal Structure Of Mouse Cd3epsilon In Complex With
Antibody 2c11 Fab
Length = 216
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 1 MDTITPAKVTFPSDYPLSP 19
M T++ AK T PS YPL+P
Sbjct: 111 MVTVSSAKTTAPSVYPLAP 129
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 21 KMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80
KM + C + D RV P D+ +G E+S +Q +++ + + +
Sbjct: 225 KMGWRCSDTAELSFVDVRV-------PADNLVGAENSGF----LQIMQQFQAERLGIAVQ 273
Query: 81 PNDESGANVDAAKMWREDREEFNK--RANKLVRKTLG 115
+G +D AK W +RE F + +++R L
Sbjct: 274 AYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLA 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,664,863
Number of Sequences: 62578
Number of extensions: 131346
Number of successful extensions: 907
Number of sequences better than 100.0: 252
Number of HSP's better than 100.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 579
Number of HSP's gapped (non-prelim): 252
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)