Query psy10005
Match_columns 117
No_of_seqs 118 out of 1137
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 15:27:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417|consensus 100.0 2.2E-42 4.7E-47 235.9 10.4 102 1-115 46-147 (148)
2 COG5078 Ubiquitin-protein liga 100.0 1.6E-41 3.5E-46 235.3 11.0 102 1-115 51-152 (153)
3 KOG0425|consensus 100.0 6E-40 1.3E-44 224.9 12.1 115 1-115 51-165 (171)
4 PTZ00390 ubiquitin-conjugating 100.0 3.8E-38 8.3E-43 219.2 12.5 102 1-115 47-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 1.1E-37 2.4E-42 215.8 12.4 102 1-115 46-147 (147)
6 KOG0424|consensus 100.0 7.8E-37 1.7E-41 207.0 10.7 104 1-115 54-157 (158)
7 KOG0426|consensus 100.0 2.1E-36 4.6E-41 202.7 10.8 116 1-116 50-165 (165)
8 KOG0419|consensus 100.0 2.1E-36 4.6E-41 202.4 10.0 101 1-114 49-149 (152)
9 KOG0418|consensus 100.0 5E-36 1.1E-40 210.9 9.9 103 1-116 51-154 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 1.5E-33 3.1E-38 193.1 10.4 98 1-110 43-140 (140)
11 smart00212 UBCc Ubiquitin-conj 100.0 2.5E-32 5.5E-37 188.0 12.3 102 1-114 44-145 (145)
12 KOG0422|consensus 100.0 1.6E-32 3.5E-37 185.1 11.1 103 2-116 48-150 (153)
13 KOG0420|consensus 100.0 4.1E-33 8.8E-38 193.8 7.9 101 1-114 74-174 (184)
14 cd00195 UBCc Ubiquitin-conjuga 100.0 3.3E-32 7.2E-37 186.7 10.7 98 1-110 44-141 (141)
15 KOG0416|consensus 100.0 1.9E-32 4.2E-37 190.2 7.2 103 1-116 45-149 (189)
16 KOG0421|consensus 100.0 2E-30 4.4E-35 176.0 7.0 98 1-112 74-171 (175)
17 KOG0423|consensus 99.9 8.2E-26 1.8E-30 157.8 6.4 102 1-115 55-156 (223)
18 KOG0427|consensus 99.8 4.9E-19 1.1E-23 118.9 7.4 75 1-88 59-135 (161)
19 KOG0429|consensus 99.8 2.9E-18 6.3E-23 123.9 10.0 101 1-114 63-169 (258)
20 KOG0894|consensus 99.6 4.3E-15 9.2E-20 107.2 10.3 89 1-103 50-143 (244)
21 KOG0895|consensus 99.5 4.5E-14 9.8E-19 119.6 6.5 73 1-79 896-970 (1101)
22 KOG0428|consensus 99.3 3.2E-12 7E-17 94.1 6.5 65 1-79 55-121 (314)
23 KOG0895|consensus 99.0 7.8E-10 1.7E-14 94.4 6.7 74 1-80 327-404 (1101)
24 KOG0897|consensus 98.8 1.6E-08 3.5E-13 66.7 5.4 91 7-110 15-110 (122)
25 KOG0896|consensus 98.8 2.2E-08 4.8E-13 67.7 5.6 65 1-79 54-122 (138)
26 PF14461 Prok-E2_B: Prokaryoti 98.7 7.7E-08 1.7E-12 65.4 7.6 66 2-80 35-106 (133)
27 PF05743 UEV: UEV domain; Int 98.4 6.2E-07 1.3E-11 60.3 4.9 60 6-79 51-116 (121)
28 KOG2391|consensus 97.3 0.0007 1.5E-08 52.5 6.1 61 6-80 71-137 (365)
29 PF14457 Prok-E2_A: Prokaryoti 96.2 0.007 1.5E-07 42.6 3.9 61 7-79 57-125 (162)
30 PF05773 RWD: RWD domain; Int 95.3 0.02 4.4E-07 36.6 3.1 24 3-26 49-72 (113)
31 PF08694 UFC1: Ubiquitin-fold 94.7 0.036 7.8E-07 38.3 3.0 41 5-45 77-118 (161)
32 smart00591 RWD domain in RING 94.6 0.053 1.2E-06 34.4 3.5 23 4-26 42-64 (107)
33 PF14462 Prok-E2_E: Prokaryoti 88.6 3.2 6.9E-05 28.0 6.7 74 4-79 43-120 (122)
34 KOG3357|consensus 79.7 1.8 3.9E-05 29.6 2.4 41 5-45 80-121 (167)
35 KOG4018|consensus 79.5 1.9 4.2E-05 31.7 2.6 21 4-24 50-70 (215)
36 PF14460 Prok-E2_D: Prokaryoti 72.6 6.2 0.00013 27.9 3.7 14 31-44 98-111 (175)
37 cd00421 intradiol_dioxygenase 69.5 8.4 0.00018 26.3 3.7 25 1-25 64-89 (146)
38 PF14455 Metal_CEHH: Predicted 66.4 43 0.00094 23.6 6.9 20 7-27 57-76 (177)
39 cd03457 intradiol_dioxygenase_ 65.2 11 0.00024 27.1 3.7 25 1-25 85-109 (188)
40 cd03459 3,4-PCD Protocatechuat 59.3 17 0.00036 25.4 3.7 25 1-25 71-100 (158)
41 PF09765 WD-3: WD-repeat regio 58.6 4.7 0.0001 31.0 0.9 18 5-22 139-156 (291)
42 KOG4445|consensus 47.1 27 0.00059 27.3 3.4 24 4-27 46-69 (368)
43 PF12018 DUF3508: Domain of un 44.6 31 0.00066 26.2 3.4 31 86-116 238-268 (281)
44 KOG0177|consensus 44.5 5.2 0.00011 29.0 -0.8 62 4-78 97-164 (200)
45 TIGR03737 PRTRC_B PRTRC system 44.0 44 0.00096 24.9 4.0 14 31-44 139-152 (228)
46 TIGR02423 protocat_alph protoc 42.2 42 0.00091 24.2 3.6 25 1-25 95-124 (193)
47 KOG0309|consensus 41.6 31 0.00067 30.4 3.2 23 5-27 468-491 (1081)
48 PF11333 DUF3135: Protein of u 39.8 68 0.0015 20.0 3.9 27 89-115 7-33 (83)
49 cd05845 Ig2_L1-CAM_like Second 38.8 95 0.0021 19.6 4.5 25 1-27 17-41 (95)
50 cd01145 TroA_c Periplasmic bin 38.0 66 0.0014 22.8 4.1 49 60-114 110-158 (203)
51 cd03463 3,4-PCD_alpha Protocat 37.9 55 0.0012 23.5 3.6 25 1-25 91-120 (185)
52 KOG4064|consensus 34.3 90 0.002 22.1 4.1 54 60-113 6-60 (196)
53 PF13950 Epimerase_Csub: UDP-g 33.7 38 0.00082 19.7 1.9 19 60-78 37-55 (62)
54 TIGR02439 catechol_proteo cate 33.4 66 0.0014 24.7 3.7 25 1-25 179-221 (285)
55 cd01020 TroA_b Metal binding p 31.4 1.1E+02 0.0023 22.7 4.4 48 60-113 97-144 (264)
56 cd03461 1,2-HQD Hydroxyquinol 31.2 76 0.0017 24.3 3.7 25 1-25 171-213 (277)
57 cd01019 ZnuA Zinc binding prot 30.6 98 0.0021 23.3 4.2 49 60-114 123-171 (286)
58 PF00779 BTK: BTK motif; Inte 29.9 19 0.0004 18.5 0.1 15 28-42 2-17 (32)
59 cd01018 ZntC Metal binding pro 29.8 1.2E+02 0.0026 22.4 4.5 48 60-113 114-161 (266)
60 TIGR02438 catachol_actin catec 29.7 85 0.0018 24.1 3.7 25 1-25 183-225 (281)
61 PF12652 CotJB: CotJB protein; 29.7 1.4E+02 0.003 18.4 4.0 33 83-115 23-55 (78)
62 PF06113 BRE: Brain and reprod 29.7 2E+02 0.0043 22.7 5.8 29 4-32 66-95 (333)
63 cd03460 1,2-CTD Catechol 1,2 d 29.1 87 0.0019 24.0 3.7 25 1-25 175-217 (282)
64 COG4957 Predicted transcriptio 28.9 28 0.00061 24.0 0.9 12 10-21 109-120 (148)
65 cd01016 TroA Metal binding pro 28.5 1.3E+02 0.0029 22.4 4.6 48 60-113 103-150 (276)
66 cd03464 3,4-PCD_beta Protocate 27.1 1E+02 0.0022 22.8 3.6 25 1-25 121-152 (220)
67 TIGR02465 chlorocat_1_2 chloro 26.3 1.1E+02 0.0024 23.0 3.7 16 1-16 149-164 (246)
68 KOG0662|consensus 25.8 61 0.0013 24.0 2.2 57 17-84 167-225 (292)
69 PF14798 Ca_hom_mod: Calcium h 25.5 61 0.0013 24.4 2.2 32 85-116 207-239 (251)
70 TIGR02422 protocat_beta protoc 25.4 1.1E+02 0.0025 22.5 3.6 25 1-25 116-147 (220)
71 KOG2851|consensus 25.4 1.9E+02 0.0042 23.3 5.0 35 33-77 332-369 (412)
72 cd01137 PsaA Metal binding pro 24.8 1.7E+02 0.0036 22.0 4.6 49 60-114 119-167 (287)
73 PF00845 Gemini_BL1: Geminivir 24.1 79 0.0017 24.0 2.6 26 4-29 124-154 (276)
74 TIGR01239 galT_2 galactose-1-p 23.9 71 0.0015 26.5 2.5 24 2-34 358-386 (489)
75 cd07981 TAF12 TATA Binding Pro 23.9 1.7E+02 0.0037 17.4 4.9 42 73-114 6-47 (72)
76 KOG3696|consensus 23.8 54 0.0012 25.7 1.7 26 13-38 303-328 (334)
77 PF09606 Med15: ARC105 or Med1 23.8 26 0.00057 30.7 0.0 23 7-29 718-740 (799)
78 PF08405 Calici_PP_N: Viral po 23.3 80 0.0017 24.9 2.5 31 87-117 309-339 (358)
79 PF09892 DUF2119: Uncharacteri 23.3 2.8E+02 0.006 20.2 5.1 80 18-115 105-192 (193)
80 COG0525 ValS Valyl-tRNA synthe 23.1 5.2E+02 0.011 23.3 7.6 51 65-115 56-122 (877)
81 PF06468 Spond_N: Spondin_N; 22.8 86 0.0019 22.6 2.5 25 3-27 2-33 (196)
82 smart00803 TAF TATA box bindin 22.4 1.8E+02 0.0038 17.0 3.6 30 86-115 19-48 (65)
83 cd03458 Catechol_intradiol_dio 21.2 1.6E+02 0.0034 22.4 3.7 25 1-25 155-197 (256)
84 cd01017 AdcA Metal binding pro 20.9 2.2E+02 0.0049 21.1 4.6 48 60-113 115-162 (282)
85 PF09458 H_lectin: H-type lect 20.8 1.3E+02 0.0028 17.3 2.7 21 4-25 2-22 (72)
86 COG4468 GalT Galactose-1-phosp 20.7 94 0.002 25.4 2.5 24 2-34 363-391 (503)
87 cd03462 1,2-CCD chlorocatechol 20.7 1.6E+02 0.0035 22.1 3.7 25 1-25 150-192 (247)
88 PRK09545 znuA high-affinity zi 20.4 1.9E+02 0.0041 22.1 4.1 49 60-114 147-195 (311)
No 1
>KOG0417|consensus
Probab=100.00 E-value=2.2e-42 Score=235.92 Aligned_cols=102 Identities=35% Similarity=0.777 Sum_probs=100.5
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
|||+|++.|.||++||++||+|+|+|+||||||+.+|.||+++|+. .|+|+++|..||++|++||.+
T Consensus 46 EgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G~IclDILk~-------------~WsPAl~i~~VllsI~sLL~~ 112 (148)
T KOG0417|consen 46 EGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNGRICLDILKD-------------QWSPALTISKVLLSICSLLSD 112 (148)
T ss_pred CCCEEEEEEECCCCCCCCCCceEeecccccCCcCccccchHHhhhc-------------cCChhhHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999997 899999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
|++++|++.++|++|+.|+++|+++||+||+|||.
T Consensus 113 PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 113 PNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM 147 (148)
T ss_pred CCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999996
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-41 Score=235.28 Aligned_cols=102 Identities=45% Similarity=0.853 Sum_probs=100.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
|||+|++.|.||++||++||+|+|+|+||||||+.+|.|||++|.+ .|+|+++|++||++|++||.+
T Consensus 51 egg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G~vCLdIL~~-------------~WsP~~~l~sILlsl~slL~~ 117 (153)
T COG5078 51 EGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKD-------------RWSPVYTLETILLSLQSLLLS 117 (153)
T ss_pred CCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCCCChhHHHhC-------------CCCccccHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
||.++|+|.+||++|++|+++|.++||+++++|+.
T Consensus 118 PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 118 PNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999986
No 3
>KOG0425|consensus
Probab=100.00 E-value=6e-40 Score=224.93 Aligned_cols=115 Identities=61% Similarity=1.070 Sum_probs=112.6
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
|||.|+..+.||.+||.+||+++|.|++||||||++|.||+|||.++++||.++++.++.|.|..|+++||++|.+||.+
T Consensus 51 eGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~ 130 (171)
T KOG0425|consen 51 EGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNS 130 (171)
T ss_pred cCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
||.++|+|-+||+.|++|+++|.++|+++++++.+
T Consensus 131 PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e 165 (171)
T KOG0425|consen 131 PNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQE 165 (171)
T ss_pred CCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998754
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.8e-38 Score=219.23 Aligned_cols=102 Identities=28% Similarity=0.632 Sum_probs=99.7
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
+||+|+++|.||++||++||+|+|.|+||||||+.+|.||+++|.. .|+|++|+++||.+|++||.+
T Consensus 47 ~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G~iCl~iL~~-------------~W~p~~ti~~iL~~i~~ll~~ 113 (152)
T PTZ00390 47 EGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSA 113 (152)
T ss_pred cCcEEEEEEECccccCCCCCEEEEecCCeeceECCCCeEECccCcc-------------cCCCCCcHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999999999999975 899999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
|++++|+|.+||++|++|++.|+++||+|++|||.
T Consensus 114 P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 114 PEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999986
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=1.1e-37 Score=215.85 Aligned_cols=102 Identities=34% Similarity=0.756 Sum_probs=99.3
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
+||+|++.|.||++||++||+|+|.|+||||||+.+|.||+++|.. .|+|++|+++||.+|++||.+
T Consensus 46 egg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G~iCl~il~~-------------~W~p~~ti~~il~~i~~ll~~ 112 (147)
T PLN00172 46 AGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRD-------------QWSPALTVSKVLLSISSLLTD 112 (147)
T ss_pred CCCEEEEEEECCcccCCCCCEEEEecCcccceECCCCEEEcccCcC-------------CCCCcCcHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999999999999999975 899999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus 113 P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 113 PNPDDPLVPEIARVFKENRSRYEATAREWTQRYAT 147 (147)
T ss_pred CCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999983
No 6
>KOG0424|consensus
Probab=100.00 E-value=7.8e-37 Score=206.98 Aligned_cols=104 Identities=37% Similarity=0.725 Sum_probs=100.6
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
|||.|++++.||++||.+||+++|.+++||||||++|.|||+||++. .+|+|+.||.+||++||.||.+
T Consensus 54 EGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgtVcLsiL~e~-----------~~W~paitikqiL~gIqdLL~~ 122 (158)
T KOG0424|consen 54 EGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGTVCLSILNEE-----------KDWRPAITIKQILLGIQDLLDT 122 (158)
T ss_pred cCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCcEehhhhccc-----------cCCCchhhHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999872 3699999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
||..+|+|++|..+|.+|+..|+++||.++++||.
T Consensus 123 Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 123 PNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred CCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999985
No 7
>KOG0426|consensus
Probab=100.00 E-value=2.1e-36 Score=202.72 Aligned_cols=116 Identities=84% Similarity=1.372 Sum_probs=113.3
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
|||+|..++.||.|||..||+++|...+|||||+.+|+||+|+|..+++||..++.+++.|+|.++++.||+++.+||.+
T Consensus 50 ~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaE 129 (165)
T KOG0426|consen 50 EGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAE 129 (165)
T ss_pred cCCccceeeecCCCCCCCCCceeeecccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 116 (117)
||.++.+|.+|+.+|++|+++|++.||..++|..++
T Consensus 130 PNdESgANvdA~~mWRe~R~ef~~i~~~lvrKtLgl 165 (165)
T KOG0426|consen 130 PNDESGANVDACKMWREDREEFEKIAKRLVRKTLGL 165 (165)
T ss_pred CCcccCcccHHHHHHHHhHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998653
No 8
>KOG0419|consensus
Probab=100.00 E-value=2.1e-36 Score=202.36 Aligned_cols=101 Identities=39% Similarity=0.801 Sum_probs=98.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
+||+|++.|+|+++||.+||.|+|+++.||||||.+|.+||++|.. .|+|.|++.+||.+||+||.+
T Consensus 49 e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~iClDiLqN-------------rWsp~Ydva~ILtsiQslL~d 115 (152)
T KOG0419|consen 49 EGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQN-------------RWSPTYDVASILTSIQSLLND 115 (152)
T ss_pred CCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCcchHHHHhc-------------CCCCchhHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999999999999999986 899999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
|++++|+|.+||++|.+|+.+|+++|++.+.++=
T Consensus 116 Pn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw 149 (152)
T KOG0419|consen 116 PNPNSPANSEAARLFSENKREYERRVKETVEQSW 149 (152)
T ss_pred CCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988764
No 9
>KOG0418|consensus
Probab=100.00 E-value=5e-36 Score=210.88 Aligned_cols=103 Identities=24% Similarity=0.580 Sum_probs=100.5
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccC-CCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhc
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLA 79 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~ 79 (117)
|||+|.++|++|++|||+||+|+|.|+||||||++ +|.|||++|.. .|++++|++++|++||++|.
T Consensus 51 EGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGaICLDilkd-------------~Wa~slTlrtvLislQalL~ 117 (200)
T KOG0418|consen 51 EGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGAICLDILKD-------------QWAASLTLRTVLISLQALLC 117 (200)
T ss_pred CCceEEEEEecCCCCCCCCCceeeeeeeecCCCCcccccchhhhhhc-------------ccchhhhHHHHHHHHHHHHc
Confidence 79999999999999999999999999999999987 99999999996 99999999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q psy10005 80 EPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116 (117)
Q Consensus 80 ~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 116 (117)
.|++.+|.+..+|++|.+|++.|.+.||.|+..||+.
T Consensus 118 ~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 118 APEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999974
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.5e-33 Score=193.12 Aligned_cols=98 Identities=47% Similarity=0.908 Sum_probs=89.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
+||+|+|+|.||++||++||+|+|.|+||||||+.+|.||+++|.. +.|+|++++.+||.+|+++|.+
T Consensus 43 ~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~icl~~l~~------------~~W~p~~~i~~il~~i~~ll~~ 110 (140)
T PF00179_consen 43 EGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGRICLDILNP------------ESWSPSYTIESILLSIQSLLSE 110 (140)
T ss_dssp TTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSBBGHGGGTT------------TTC-TTSHHHHHHHHHHHHHHS
T ss_pred ecccccccccccccccccccccccccccccccccccccchhhhhhc------------ccCCcccccccHHHHHHHHHhC
Confidence 6999999999999999999999999999999999999999999985 3699999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHH
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLV 110 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 110 (117)
|+.++++|.+|+++|++|+++|.++||+|.
T Consensus 111 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 111 PNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp TCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred CCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 999999999999999999999999999984
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.5e-32 Score=188.04 Aligned_cols=102 Identities=41% Similarity=0.859 Sum_probs=98.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
+||+|++.|.||++||++||+|+|.++||||||+++|.||+++|.. +.|+|++++.+||.+|+++|.+
T Consensus 44 ~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G~icl~~l~~------------~~W~p~~~l~~il~~i~~~l~~ 111 (145)
T smart00212 44 EGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQ------------EKWSPATTLETVLLSIQSLLSE 111 (145)
T ss_pred CCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCCCEehhhcCC------------CCCCCCCcHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999983 2899999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
|+.++++|.+|+++|.+|++.|.++|+++++|++
T Consensus 112 p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 112 PNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999974
No 12
>KOG0422|consensus
Probab=100.00 E-value=1.6e-32 Score=185.12 Aligned_cols=103 Identities=29% Similarity=0.695 Sum_probs=99.9
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCC
Q psy10005 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAEP 81 (117)
Q Consensus 2 gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~p 81 (117)
.|.|+++|.||.+|||+||+|.|.|+||||||++.|.||+.++.. ++|.|+..+.+||+.|.+++.+|
T Consensus 48 kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~gqvClPiis~------------EnWkP~T~teqVlqaLi~liN~P 115 (153)
T KOG0422|consen 48 KGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKGQVCLPIISA------------ENWKPATRTEQVLQALIALINDP 115 (153)
T ss_pred CcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCCceeeeeeec------------ccccCcccHHHHHHHHHHHhcCC
Confidence 489999999999999999999999999999999999999999986 79999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q psy10005 82 NDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116 (117)
Q Consensus 82 ~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 116 (117)
+++.|++.++|..|.+|+..|.++|.++|+||+..
T Consensus 116 ~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 116 EPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 99999999999999999999999999999999863
No 13
>KOG0420|consensus
Probab=100.00 E-value=4.1e-33 Score=193.77 Aligned_cols=101 Identities=31% Similarity=0.598 Sum_probs=97.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
.||.|.|.+.+|+.||++||+|+++|+||||||+.+|.|||+||++ +|+|+.++.+|+.+|+.||.+
T Consensus 74 ~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~GnVCLnILRe-------------dW~P~lnL~sIi~GL~~LF~e 140 (184)
T KOG0420|consen 74 QGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGNVCLNILRE-------------DWRPVLNLNSIIYGLQFLFLE 140 (184)
T ss_pred cCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcchHHHHHHHh-------------cCccccchHHHHHHHHHHhcc
Confidence 3899999999999999999999999999999999999999999996 899999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
|++++|+|.+||+.+.+|++.|+.+||.....++
T Consensus 141 pn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 141 PNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred CCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999887654
No 14
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.98 E-value=3.3e-32 Score=186.68 Aligned_cols=98 Identities=41% Similarity=0.854 Sum_probs=94.0
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
+||+|+++|.||++||++||+|+|.|++|||||+.+|.||+++|.. ..|+|++++++||.+|+++|.+
T Consensus 44 ~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~icl~~l~~------------~~W~p~~~l~~il~~i~~~l~~ 111 (141)
T cd00195 44 EGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKT------------HGWSPAYTLRTVLLSLQSLLNE 111 (141)
T ss_pred cCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCCCchhhcCC------------CCcCCcCcHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999999999986 1499999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHH
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLV 110 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 110 (117)
|+.++++|.+||++|++|+++|+++|++|+
T Consensus 112 p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 112 PNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 999999999999999999999999999874
No 15
>KOG0416|consensus
Probab=99.97 E-value=1.9e-32 Score=190.16 Aligned_cols=103 Identities=27% Similarity=0.610 Sum_probs=98.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccC-CCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHH-HHHhh
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLS-VVSML 78 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~-i~~ll 78 (117)
+||+++++|.+|++||++.|.|.|+++||||||+. +|.|||+.+++ .|+|.+.+..|+.. |-.||
T Consensus 45 egGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQ-------------tWSp~yDL~NIfetfLPQLL 111 (189)
T KOG0416|consen 45 EGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQ-------------TWSPLYDLVNIFETFLPQLL 111 (189)
T ss_pred cCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhh-------------hhhHHHHHHHHHHHHhHHHh
Confidence 69999999999999999999999999999999998 99999999998 89999999999887 57899
Q ss_pred cCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q psy10005 79 AEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116 (117)
Q Consensus 79 ~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 116 (117)
..||+.+|+|.+||.+|.++++.|+++||++++|||..
T Consensus 112 ~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 112 RYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred cCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999964
No 16
>KOG0421|consensus
Probab=99.96 E-value=2e-30 Score=176.01 Aligned_cols=98 Identities=39% Similarity=0.778 Sum_probs=93.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
+|-.|++.+.||.+||+.||+|+|+|+.|||||+..|.|||+||.+ .|+..|+++.||++||+||-+
T Consensus 74 egl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~GnIcLDILkd-------------KWSa~YdVrTILLSiQSLLGE 140 (175)
T KOG0421|consen 74 EGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGNICLDILKD-------------KWSAVYDVRTILLSIQSLLGE 140 (175)
T ss_pred cCcEEEEEEecCCCCCCCCCeeEeeccccCCCccccccchHHHHHH-------------HHHHHHhHHHHHHHHHHHhCC
Confidence 5778999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHH
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRK 112 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k 112 (117)
||.++|+|+.||++|. |.++|.+.+.+.-++
T Consensus 141 PNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 141 PNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred CCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 9999999999999999 999999998876554
No 17
>KOG0423|consensus
Probab=99.92 E-value=8.2e-26 Score=157.81 Aligned_cols=102 Identities=33% Similarity=0.657 Sum_probs=98.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcC
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAE 80 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~ 80 (117)
|+|+|++.+.+..|||.+||+-.|+|+||||||-.+|.||...|.. +|+|+++|+.||+.|..||..
T Consensus 55 a~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNGEICVNtLKk-------------DW~p~LGirHvLltikCLLI~ 121 (223)
T KOG0423|consen 55 ANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANGEICVNTLKK-------------DWNPSLGIRHVLLTIKCLLIE 121 (223)
T ss_pred ccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCceehhhhhhc-------------ccCcccchhhHhhhhheeeec
Confidence 6899999999999999999999999999999999999999999987 999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 81 PNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 81 p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
|++++.+|.+|+++..++.+.|.++||-++.-+++
T Consensus 122 PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~ 156 (223)
T KOG0423|consen 122 PNPESALNEEAGKMLLENYDEYARRARLYTEIHAK 156 (223)
T ss_pred CChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999987765
No 18
>KOG0427|consensus
Probab=99.78 E-value=4.9e-19 Score=118.95 Aligned_cols=75 Identities=33% Similarity=0.758 Sum_probs=66.8
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEeccc-ccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhc
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEM-FHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLA 79 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~ 79 (117)
||-+|++.+.||+.||++.|+|.|+.++ .||+||.+|.|||++|.+ .|+|++++.+|.++|.+||.
T Consensus 59 a~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d-------------~WsPAmsv~SvClSIlSMLS 125 (161)
T KOG0427|consen 59 ANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYD-------------SWSPAMSVQSVCLSILSMLS 125 (161)
T ss_pred cCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCeEEEEeecc-------------cCCcchhhHHHHHHHHHHHc
Confidence 5789999999999999999999999885 899999999999999986 99999999999999999997
Q ss_pred C-CCCCCCcc
Q psy10005 80 E-PNDESGAN 88 (117)
Q Consensus 80 ~-p~~~~~~n 88 (117)
+ .....|.+
T Consensus 126 Ss~eKqrP~D 135 (161)
T KOG0427|consen 126 SSKEKQRPTD 135 (161)
T ss_pred cCccccCCCc
Confidence 5 44444443
No 19
>KOG0429|consensus
Probab=99.77 E-value=2.9e-18 Score=123.91 Aligned_cols=101 Identities=19% Similarity=0.437 Sum_probs=91.4
Q ss_pred CCCEEEEEEEcCCCCCC--CCCeEEEecccccccccC-CCcEEecCCCCCCCCCCCCCCCCCCCCCccc-HHHHHHHHHH
Q psy10005 1 MDTITPAKVTFPSDYPL--SPPKMQFTCEMFHPNIYA-DGRVCISILHAPGDDPMGYESSSERWSPVQS-VEKILLSVVS 76 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HpnV~~-~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t-~~~il~~i~~ 76 (117)
+||+|+|+|.+|++||. .-|+|.|.+.+|||+|.+ ++.+|++-... .|+..-+ |.++|..||.
T Consensus 63 aggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~skeLdl~raf~-------------eWRk~ehhiwqvL~ylqr 129 (258)
T KOG0429|consen 63 AGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKELDLNRAFP-------------EWRKEEHHIWQVLVYLQR 129 (258)
T ss_pred cCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccceeHhhhhh-------------hhhccccHHHHHHHHHHH
Confidence 68999999999999995 459999999999999988 89999986654 6887775 9999999999
Q ss_pred hhcCCCCCCC--ccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 77 MLAEPNDESG--ANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 77 ll~~p~~~~~--~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
+|++|+...+ .|++|+.+|++++++|.++|+++++.+-
T Consensus 130 iF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr 169 (258)
T KOG0429|consen 130 IFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASR 169 (258)
T ss_pred HhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 9999998876 4999999999999999999999998764
No 20
>KOG0894|consensus
Probab=99.62 E-value=4.3e-15 Score=107.23 Aligned_cols=89 Identities=29% Similarity=0.557 Sum_probs=69.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecc--cccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhh
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCE--MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSML 78 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll 78 (117)
+||-|+.+|.||++||++||.|++.|+ +|..|- ++|||+.+-++ +.|+|.+++.+||.+|.++|
T Consensus 50 ~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFktnt----RLCLSiSDfHP----------dsWNP~WsVStILtGLlSFM 115 (244)
T KOG0894|consen 50 YGGYYHGKLIFPPEYPFKPPAITMITPNGRFKTNT----RLCLSISDFHP----------DSWNPGWSVSTILTGLLSFM 115 (244)
T ss_pred cCceeeeEEeCCCCCCCCCCeeEEECCCCceecCc----eEEEeccccCc----------CcCCCcccHHHHHHHHHHHH
Confidence 699999999999999999999999996 677664 89999998765 49999999999999999999
Q ss_pred cC--CCCCCCccH-HHHHHHHHCHHHHH
Q psy10005 79 AE--PNDESGANV-DAAKMWREDREEFN 103 (117)
Q Consensus 79 ~~--p~~~~~~n~-~a~~~~~~~~~~f~ 103 (117)
.+ |...+.... ...++|..+--+|+
T Consensus 116 ~e~~pTtGSI~tS~~~kr~lA~~SlaFN 143 (244)
T KOG0894|consen 116 TEDSPTTGSIETSDQDKRMLAKSSLAFN 143 (244)
T ss_pred hcCCCccCcccccHHHHHHHHHhhhhhc
Confidence 75 555554322 22344444444443
No 21
>KOG0895|consensus
Probab=99.49 E-value=4.5e-14 Score=119.64 Aligned_cols=73 Identities=33% Similarity=0.711 Sum_probs=67.2
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecc--cccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhh
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCE--MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSML 78 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll 78 (117)
++|+|.|+|.||++||..||.|-..+. +++||.|..|+|||++|+.| +|+..+-|+|+.++.++|.+||.|+
T Consensus 896 ~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw------~g~~~e~w~~~s~~lq~l~s~q~l~ 969 (1101)
T KOG0895|consen 896 QDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTW------HGRGNEVWNPSSSILQVLVSIQGLV 969 (1101)
T ss_pred ccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccc------cCCCccccCcchhHHHHHHHhhhhh
Confidence 479999999999999999999999975 79999999999999999987 5667789999889999999999987
Q ss_pred c
Q psy10005 79 A 79 (117)
Q Consensus 79 ~ 79 (117)
.
T Consensus 970 l 970 (1101)
T KOG0895|consen 970 L 970 (1101)
T ss_pred c
Confidence 4
No 22
>KOG0428|consensus
Probab=99.33 E-value=3.2e-12 Score=94.14 Aligned_cols=65 Identities=26% Similarity=0.628 Sum_probs=55.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecc--cccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhh
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCE--MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSML 78 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll 78 (117)
+||+|+.+|.||.+||++||.+..+|+ .|-- +-+|||||.+-++ +.|.|+|+|+..|+.|..+|
T Consensus 55 eGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~----nkKiCLSISgyHP----------EtWqPSWSiRTALlAlIgFm 120 (314)
T KOG0428|consen 55 EGGIYHGRIVLPADYPMKPPSIILLTPNGRFEV----NKKICLSISGYHP----------ETWQPSWSIRTALLALIGFM 120 (314)
T ss_pred cCceeeeeEecCCCCCCCCCeEEEEcCCCceee----CceEEEEecCCCc----------cccCcchhHHHHHHHHHccc
Confidence 699999999999999999999999985 3332 4589999987644 58999999999999999888
Q ss_pred c
Q psy10005 79 A 79 (117)
Q Consensus 79 ~ 79 (117)
-
T Consensus 121 P 121 (314)
T KOG0428|consen 121 P 121 (314)
T ss_pred c
Confidence 4
No 23
>KOG0895|consensus
Probab=99.00 E-value=7.8e-10 Score=94.39 Aligned_cols=74 Identities=30% Similarity=0.692 Sum_probs=65.9
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecc---cccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCE---MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPV-QSVEKILLSVVS 76 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~-~t~~~il~~i~~ 76 (117)
++|+|.|+|.||..||..||.+.++|. .+.||.|.+|+||+++|..|.+. .-+.|+|. .++.++|..||.
T Consensus 327 ~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~------~~e~wtp~~~sl~qvL~sIQ~ 400 (1101)
T KOG0895|consen 327 ADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGS------RREKWTPNGSSLLQVLESIQG 400 (1101)
T ss_pred cCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCceEEeeeeeecccc------cccCCCccccchhhhhhhhhh
Confidence 589999999999999999999999987 79999999999999999986432 33699999 679999999999
Q ss_pred hhcC
Q psy10005 77 MLAE 80 (117)
Q Consensus 77 ll~~ 80 (117)
++.+
T Consensus 401 Li~~ 404 (1101)
T KOG0895|consen 401 LILN 404 (1101)
T ss_pred hhcc
Confidence 9854
No 24
>KOG0897|consensus
Probab=98.77 E-value=1.6e-08 Score=66.67 Aligned_cols=91 Identities=16% Similarity=0.379 Sum_probs=66.4
Q ss_pred EEEEcCCCCCCCCCeEEEeccc-ccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCCC--C
Q psy10005 7 AKVTFPSDYPLSPPKMQFTCEM-FHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAEPN--D 83 (117)
Q Consensus 7 ~~i~fp~~YP~~pP~v~f~t~i-~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~p~--~ 83 (117)
+.+.|+++||+.||.+|.+.++ -..-|-.+|.||+.+|.. .+|+.+|+++.++++|.+++.... .
T Consensus 15 l~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~------------qgwssay~Ve~vi~qiaatlVkG~~ri 82 (122)
T KOG0897|consen 15 LLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTK------------QGWSSAYEVERVIMQIAATLVKGGARI 82 (122)
T ss_pred eeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHcc------------ccccchhhHHHHHHHHHHHhhccceeE
Confidence 5677999999999999888653 334444589999999987 599999999999999999998754 3
Q ss_pred CCCccHHHHHHHHH--CHHHHHHHHHHHH
Q psy10005 84 ESGANVDAAKMWRE--DREEFNKRANKLV 110 (117)
Q Consensus 84 ~~~~n~~a~~~~~~--~~~~f~~~~~~~~ 110 (117)
..+++.+.. +|.. -.+.|...++.+.
T Consensus 83 ~~~a~k~sk-~~s~~qa~~sfksLv~~he 110 (122)
T KOG0897|consen 83 EFPAEKSSK-LYSHSQAQQSFKSLVQIHE 110 (122)
T ss_pred ecCcchhhh-HhhHHHHHHHHHHHHHHHH
Confidence 455554433 5543 3445666665543
No 25
>KOG0896|consensus
Probab=98.75 E-value=2.2e-08 Score=67.75 Aligned_cols=65 Identities=22% Similarity=0.399 Sum_probs=55.6
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecccccccccC-CCcEEe---cCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCI---SILHAPGDDPMGYESSSERWSPVQSVEKILLSVVS 76 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~-~G~vcl---~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ 76 (117)
|+.+|.++|.+.++||..||.|+|.++|.-+.|+. +|.|.- ..|. .|+-+|++..+|..++.
T Consensus 54 EnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~Vd~~~i~~L~--------------~W~~~y~~~~vl~~lr~ 119 (138)
T KOG0896|consen 54 ENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVVDPRDITVLA--------------RWQRSYSIKMVLGQLRK 119 (138)
T ss_pred ccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCccCccccchhh--------------cccccchhhHHHHhhhH
Confidence 57899999999999999999999999999999977 666643 3343 89999999999999986
Q ss_pred hhc
Q psy10005 77 MLA 79 (117)
Q Consensus 77 ll~ 79 (117)
++.
T Consensus 120 ~m~ 122 (138)
T KOG0896|consen 120 EMM 122 (138)
T ss_pred HHH
Confidence 553
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.72 E-value=7.7e-08 Score=65.45 Aligned_cols=66 Identities=23% Similarity=0.651 Sum_probs=57.4
Q ss_pred CCEEEEEEEcCCCCCCCCCeEEEeccc---ccccccCCCcEEe---cCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q psy10005 2 DTITPAKVTFPSDYPLSPPKMQFTCEM---FHPNIYADGRVCI---SILHAPGDDPMGYESSSERWSPVQSVEKILLSVV 75 (117)
Q Consensus 2 gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HpnV~~~G~vcl---~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~ 75 (117)
|+.+.++|.+|++||..||.|....+. +-|||+.+|.+|+ +..- +.|.|.-++.++|.++.
T Consensus 35 ~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~-------------D~~~P~~~~~~~l~~a~ 101 (133)
T PF14461_consen 35 GGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVL-------------DPWDPEGIIADCLERAI 101 (133)
T ss_pred CeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCccc-------------CccCHHHHHHHHHHHHH
Confidence 789999999999999999999888543 7899999999999 4333 38999999999999999
Q ss_pred HhhcC
Q psy10005 76 SMLAE 80 (117)
Q Consensus 76 ~ll~~ 80 (117)
.+|.+
T Consensus 102 ~lL~~ 106 (133)
T PF14461_consen 102 RLLED 106 (133)
T ss_pred HHHHH
Confidence 99874
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.39 E-value=6.2e-07 Score=60.25 Aligned_cols=60 Identities=22% Similarity=0.528 Sum_probs=43.9
Q ss_pred EEEEEcCCCCCCCCCeEEEeccc-----ccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCC-cccHHHHHHHHHHhhc
Q psy10005 6 PAKVTFPSDYPLSPPKMQFTCEM-----FHPNIYADGRVCISILHAPGDDPMGYESSSERWSP-VQSVEKILLSVVSMLA 79 (117)
Q Consensus 6 ~~~i~fp~~YP~~pP~v~f~t~i-----~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p-~~t~~~il~~i~~ll~ 79 (117)
.+.|.+|.+||..||.|...... -+.+|+.+|+|.+..|. +|++ ..++.+++..+++.|.
T Consensus 51 Pi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~--------------~W~~~~s~L~~lv~~l~~~F~ 116 (121)
T PF05743_consen 51 PICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ--------------NWNPPSSNLVDLVQELQAVFS 116 (121)
T ss_dssp EEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH--------------T--TTTS-HHHHHHHHHHCCC
T ss_pred eEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc--------------cCCCCCCCHHHHHHHHHHHHh
Confidence 57788999999999999777542 24599999999999997 6877 6679999999888775
No 28
>KOG2391|consensus
Probab=97.31 E-value=0.0007 Score=52.52 Aligned_cols=61 Identities=23% Similarity=0.536 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCCCCCeEEEecc-----cccccccCCCcEEecCCCCCCCCCCCCCCCCCCCCCccc-HHHHHHHHHHhhc
Q psy10005 6 PAKVTFPSDYPLSPPKMQFTCE-----MFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS-VEKILLSVVSMLA 79 (117)
Q Consensus 6 ~~~i~fp~~YP~~pP~v~f~t~-----i~HpnV~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t-~~~il~~i~~ll~ 79 (117)
.+.|.+.+.||..||.|..... --|-+|+.+|.|-|..|. +|.+..+ +..++..+-+.|.
T Consensus 71 PV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh--------------~W~~pssdLv~Liq~l~a~f~ 136 (365)
T KOG2391|consen 71 PVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLH--------------NWDPPSSDLVGLIQELIAAFS 136 (365)
T ss_pred eEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhc--------------cCCCccchHHHHHHHHHHHhc
Confidence 3677889999999999966643 138999999999999997 6876654 8888888877776
Q ss_pred C
Q psy10005 80 E 80 (117)
Q Consensus 80 ~ 80 (117)
+
T Consensus 137 ~ 137 (365)
T KOG2391|consen 137 E 137 (365)
T ss_pred C
Confidence 5
No 29
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=96.23 E-value=0.007 Score=42.62 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=48.1
Q ss_pred EEEEcCCCCCCCCCeEEEecccc---cccccCC-----CcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhh
Q psy10005 7 AKVTFPSDYPLSPPKMQFTCEMF---HPNIYAD-----GRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSML 78 (117)
Q Consensus 7 ~~i~fp~~YP~~pP~v~f~t~i~---HpnV~~~-----G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll 78 (117)
+.|.|+.+||..+|.|.++-+.| +||+... ..+|+.--.. ..|.+..++..+|..|...|
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~------------~e~~~~~g~~~~l~rl~~Wl 124 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPW------------SEWRPSWGPEGFLDRLFDWL 124 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCH------------HHhhhccCHHHHHHHHHHHH
Confidence 56889999999999888876644 5777664 5688864432 48999999999999998877
Q ss_pred c
Q psy10005 79 A 79 (117)
Q Consensus 79 ~ 79 (117)
.
T Consensus 125 ~ 125 (162)
T PF14457_consen 125 R 125 (162)
T ss_pred H
Confidence 4
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.34 E-value=0.02 Score=36.60 Aligned_cols=24 Identities=33% Similarity=0.672 Sum_probs=17.7
Q ss_pred CEEEEEEEcCCCCCCCCCeEEEec
Q psy10005 3 TITPAKVTFPSDYPLSPPKMQFTC 26 (117)
Q Consensus 3 g~f~~~i~fp~~YP~~pP~v~f~t 26 (117)
..+.+.|+||++||..+|.|...+
T Consensus 49 ~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 49 PSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp EEEEEEEEE-SSTTSS--EEEEEE
T ss_pred eeEEEEEeCCCcCCCcCCEEEEEc
Confidence 357899999999999999998764
No 31
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.69 E-value=0.036 Score=38.30 Aligned_cols=41 Identities=17% Similarity=0.442 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCCCCCeEEEecc-cccccccCCCcEEecCCC
Q psy10005 5 TPAKVTFPSDYPLSPPKMQFTCE-MFHPNIYADGRVCISILH 45 (117)
Q Consensus 5 f~~~i~fp~~YP~~pP~v~f~t~-i~HpnV~~~G~vcl~~l~ 45 (117)
|.+++.+|..||..||.|....- =--.-.|..|+|||+.-.
T Consensus 77 F~~eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HF 118 (161)
T PF08694_consen 77 FDLEFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHF 118 (161)
T ss_dssp EEEEEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTH
T ss_pred EeeecCCCccCCCCCcceeccccCCchhhhhcCceEeeeccc
Confidence 55666679999999999976521 012233458999998643
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=94.56 E-value=0.053 Score=34.39 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEEEcCCCCCCCCCeEEEec
Q psy10005 4 ITPAKVTFPSDYPLSPPKMQFTC 26 (117)
Q Consensus 4 ~f~~~i~fp~~YP~~pP~v~f~t 26 (117)
.+.+.|.||++||..+|.|.+..
T Consensus 42 ~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 42 SLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred EEEEEEECCCCCCCCCCCeEEEC
Confidence 37889999999999999997764
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=88.60 E-value=3.2 Score=27.95 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=44.6
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecccccccccCCCcE--EecCCCCCCCC-CCCCCCCCCCCCCccc-HHHHHHHHHHhhc
Q psy10005 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRV--CISILHAPGDD-PMGYESSSERWSPVQS-VEKILLSVVSMLA 79 (117)
Q Consensus 4 ~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~G~v--cl~~l~~~~~~-~~~~~~~~~~W~p~~t-~~~il~~i~~ll~ 79 (117)
.-.+.|.+|+.||..+|-+-+..+-.... ..|.+ |........+- =.+++.-...|+|... |.+.|..|...|.
T Consensus 43 ~~dili~iP~gYP~~~~DmfY~~P~L~~~--~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 43 EVDILILIPPGYPDAPLDMFYVYPPLKLA--DGGPIPNAAEVTQTFDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred ceEEEEECCCCCCCCCCCcEEECCceEcc--CCCcCCchhcchhhcCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 34577889999999999887775533211 02233 43322221111 1233333468999886 9999988877663
No 34
>KOG3357|consensus
Probab=79.73 E-value=1.8 Score=29.61 Aligned_cols=41 Identities=17% Similarity=0.446 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCCCCCCeEEEecc-cccccccCCCcEEecCCC
Q psy10005 5 TPAKVTFPSDYPLSPPKMQFTCE-MFHPNIYADGRVCISILH 45 (117)
Q Consensus 5 f~~~i~fp~~YP~~pP~v~f~t~-i~HpnV~~~G~vcl~~l~ 45 (117)
|.+++.+|-.||-.+|.|...-- =----.|..|+|||..-.
T Consensus 80 fdvefdipityp~tapeialpeldgktakmyrggkiclt~hf 121 (167)
T KOG3357|consen 80 FDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHF 121 (167)
T ss_pred eeeeeccccccCCCCccccccccCchhhhhhcCceEeecccc
Confidence 44555569999999999865321 011223457999997543
No 35
>KOG4018|consensus
Probab=79.53 E-value=1.9 Score=31.70 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=18.4
Q ss_pred EEEEEEEcCCCCCCCCCeEEE
Q psy10005 4 ITPAKVTFPSDYPLSPPKMQF 24 (117)
Q Consensus 4 ~f~~~i~fp~~YP~~pP~v~f 24 (117)
.+.+.+.++++||..+|.+.+
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~ 70 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEA 70 (215)
T ss_pred cEEEEEEccCCCCCCCcceec
Confidence 677899999999999999933
No 36
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=72.62 E-value=6.2 Score=27.85 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=11.9
Q ss_pred ccccCCCcEEecCC
Q psy10005 31 PNIYADGRVCISIL 44 (117)
Q Consensus 31 pnV~~~G~vcl~~l 44 (117)
+||+.+|.||+...
T Consensus 98 ~NV~~~g~vC~G~~ 111 (175)
T PF14460_consen 98 FNVYSNGSVCWGNN 111 (175)
T ss_pred cccCCCCcEeeCCC
Confidence 68988999999754
No 37
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=69.53 E-value=8.4 Score=26.31 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.9
Q ss_pred CCCEEEEEEEcCCCCC-CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP-LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP-~~pP~v~f~ 25 (117)
+.|.|.|.-.+|--|| .+||.|-|.
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 4699999999999999 999999887
No 38
>PF14455 Metal_CEHH: Predicted metal binding domain
Probab=66.42 E-value=43 Score=23.63 Aligned_cols=20 Identities=25% Similarity=0.637 Sum_probs=14.9
Q ss_pred EEEEcCCCCCCCCCeEEEecc
Q psy10005 7 AKVTFPSDYPLSPPKMQFTCE 27 (117)
Q Consensus 7 ~~i~fp~~YP~~pP~v~f~t~ 27 (117)
++|.| .||-..||.|.|+.+
T Consensus 57 lr~d~-~n~Dl~PPSV~fvDp 76 (177)
T PF14455_consen 57 LRFDF-TNWDLRPPSVVFVDP 76 (177)
T ss_pred EEEec-cccCcCCCceEEecc
Confidence 44444 459999999999965
No 39
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=65.18 E-value=11 Score=27.07 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=23.1
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~ 25 (117)
+.|.|.|+-.+|--||.++|-|-|.
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~ 109 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFK 109 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEE
Confidence 4699999999999999999999887
No 40
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=59.35 E-value=17 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.8
Q ss_pred CCCEEEEEEEcCCCCC-----CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP-----LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP-----~~pP~v~f~ 25 (117)
+.|.|.|.-.+|--|| .+||.|-|.
T Consensus 71 ~~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~ 100 (158)
T cd03459 71 ADGRYRFRTIKPGAYPWRNGAWRAPHIHVS 100 (158)
T ss_pred CCCcEEEEEECCCCcCCCCCCCcCCEEEEE
Confidence 4699999999999999 899999887
No 41
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=58.62 E-value=4.7 Score=30.97 Aligned_cols=18 Identities=33% Similarity=0.824 Sum_probs=15.4
Q ss_pred EEEEEEcCCCCCCCCCeE
Q psy10005 5 TPAKVTFPSDYPLSPPKM 22 (117)
Q Consensus 5 f~~~i~fp~~YP~~pP~v 22 (117)
--++|.+|.+||.++|.+
T Consensus 139 H~l~l~l~~~yp~~~p~~ 156 (291)
T PF09765_consen 139 HYLELKLPSNYPFEPPSC 156 (291)
T ss_dssp EEEEEETTTTTTTSEEEE
T ss_pred EEEEEEECCCCCCCCcee
Confidence 357899999999999975
No 42
>KOG4445|consensus
Probab=47.10 E-value=27 Score=27.32 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=21.5
Q ss_pred EEEEEEEcCCCCCCCCCeEEEecc
Q psy10005 4 ITPAKVTFPSDYPLSPPKMQFTCE 27 (117)
Q Consensus 4 ~f~~~i~fp~~YP~~pP~v~f~t~ 27 (117)
++.+.++.++.||...|+|+...+
T Consensus 46 cvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 46 CVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEecCCCCCCcCCceEecCC
Confidence 577889999999999999998865
No 43
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=44.59 E-value=31 Score=26.20 Aligned_cols=31 Identities=26% Similarity=0.235 Sum_probs=27.3
Q ss_pred CccHHHHHHHHHCHHHHHHHHHHHHHHHhcc
Q psy10005 86 GANVDAAKMWREDREEFNKRANKLVRKTLGL 116 (117)
Q Consensus 86 ~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~ 116 (117)
-.+.+++..|..+++.|...+.+.+++.+.+
T Consensus 238 F~s~~aa~~F~~~P~~yi~~v~~~ar~~peL 268 (281)
T PF12018_consen 238 FSSREAAYRFAEDPERYIQAVLEKARKNPEL 268 (281)
T ss_pred eCCHHHHHHHHHCHHHHHHHHHHHHhhCHHH
Confidence 4678999999999999999999999987653
No 44
>KOG0177|consensus
Probab=44.54 E-value=5.2 Score=29.02 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=36.6
Q ss_pred EEEEEEEcCCCCCCCCCeEEEeccc--cccccc----CCCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHh
Q psy10005 4 ITPAKVTFPSDYPLSPPKMQFTCEM--FHPNIY----ADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSM 77 (117)
Q Consensus 4 ~f~~~i~fp~~YP~~pP~v~f~t~i--~HpnV~----~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~l 77 (117)
.|++.+.+---=|.+-|...+..-+ -++--+ ..+..|+++|+. .|+|.+|+++.+.-++.+
T Consensus 97 ~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr-------------~Y~pdmt~eea~~lmkKC 163 (200)
T KOG0177|consen 97 PYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDR-------------YYKPDMTIEEALDLMKKC 163 (200)
T ss_pred CceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHh-------------hhCCCCCHHHHHHHHHHH
Confidence 3555555543334445665555321 111111 145689999997 899999988887666544
Q ss_pred h
Q psy10005 78 L 78 (117)
Q Consensus 78 l 78 (117)
+
T Consensus 164 v 164 (200)
T KOG0177|consen 164 V 164 (200)
T ss_pred H
Confidence 4
No 45
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=43.96 E-value=44 Score=24.88 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=11.6
Q ss_pred ccccCCCcEEecCC
Q psy10005 31 PNIYADGRVCISIL 44 (117)
Q Consensus 31 pnV~~~G~vcl~~l 44 (117)
+||+.+|.||+...
T Consensus 139 fNV~~~G~VC~G~~ 152 (228)
T TIGR03737 139 FNVWSNGEICAGNA 152 (228)
T ss_pred CccCCCCeEeeCCC
Confidence 58888999999744
No 46
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=42.17 E-value=42 Score=24.22 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=21.3
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYPL-----SPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 25 (117)
+.|.|.|+-.+|-.||. +||-|-|.
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~ 124 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVS 124 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 46899999999999998 88877665
No 47
>KOG0309|consensus
Probab=41.59 E-value=31 Score=30.40 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCCC-CCeEEEecc
Q psy10005 5 TPAKVTFPSDYPLS-PPKMQFTCE 27 (117)
Q Consensus 5 f~~~i~fp~~YP~~-pP~v~f~t~ 27 (117)
.++.|.||-+||.+ +|+++|..+
T Consensus 468 lrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 468 LRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred EEEEEeccccCCCCCCCceEEecC
Confidence 47889999999986 699999854
No 48
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=39.82 E-value=68 Score=19.98 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=21.6
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 89 VDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 89 ~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
.+-..++++|+++|.+..++.++..+.
T Consensus 7 D~L~~LA~~dPe~fe~lr~~~~ee~I~ 33 (83)
T PF11333_consen 7 DELKELAQNDPEAFEQLRQELIEEMIE 33 (83)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 456788999999999998888776543
No 49
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=38.77 E-value=95 Score=19.62 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=19.8
Q ss_pred CCCEEEEEEEcCCCCCCCCCeEEEecc
Q psy10005 1 MDTITPAKVTFPSDYPLSPPKMQFTCE 27 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~~pP~v~f~t~ 27 (117)
||-.+.|...-|..|| .|.|.+.+.
T Consensus 17 eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 17 EGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred cCCCEEEEecCCCCCC--CCEEEEECC
Confidence 4667778887899999 599988864
No 50
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.01 E-value=66 Score=22.84 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=33.8
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
-|-.-..+..+...|..-|.+-++. -+..|++|.+.|.++.++..+++.
T Consensus 110 ~Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~l~~l~~~~~ 158 (203)
T cd01145 110 VWLDPNNAPALAKALADALIELDPS------EQEEYKENLRVFLAKLNKLLREWE 158 (203)
T ss_pred eecCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4776667778888887777643332 266788888888887776655543
No 51
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=37.93 E-value=55 Score=23.45 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=20.6
Q ss_pred CCCEEEEEEEcCCCCCC-----CCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYPL-----SPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~-----~pP~v~f~ 25 (117)
+.|.|.|.-.+|--||. +||-|-|.
T Consensus 91 ~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 91 ADGRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 46999999999999995 77776555
No 52
>KOG4064|consensus
Probab=34.29 E-value=90 Score=22.11 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCCCcc-cHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHH
Q psy10005 60 RWSPVQ-SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113 (117)
Q Consensus 60 ~W~p~~-t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 113 (117)
...|.. ++.+++.+|..+|..-..+...-...-..|+.|+.++.+.|+.-.-+|
T Consensus 6 ~~~p~~~sl~dLv~~lh~~F~~~~vnveeV~~lM~sYkSnp~EWr~yAkFD~y~Y 60 (196)
T KOG4064|consen 6 VLKPRMISLVDLVVQLHEIFQQKLVNVEEVMKLMASYKSNPNEWRRYAKFDMYKY 60 (196)
T ss_pred ccCchhhhHHHHHHHHHHHHHhcccCHHHHHHHHHHhhcCHHHHHHHHhhhHHHH
Confidence 445555 588888888888865443332233344678889999888887655555
No 53
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=33.66 E-value=38 Score=19.72 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=12.2
Q ss_pred CCCCcccHHHHHHHHHHhh
Q psy10005 60 RWSPVQSVEKILLSVVSML 78 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll 78 (117)
+|.|.++|.+++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 8999999999998876543
No 54
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=33.40 E-value=66 Score=24.73 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.4
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP------------------LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 25 (117)
+.|.|.|+-.+|--|| .+||-|-|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 4699999999999997 678888776
No 55
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.36 E-value=1.1e+02 Score=22.73 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=33.7
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHH
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 113 (117)
-|-.-.....+...|...|..-++.. +..|..|.+.|.++.+...+++
T Consensus 97 ~Wldp~n~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~l~~l~~~~ 144 (264)
T cd01020 97 LWYDPETMSKVANALADALVKADPDN------KKYYQANAKKFVASLKPLAAKI 144 (264)
T ss_pred eecCHhHHHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 68766677788888888886544332 4578888888888877665554
No 56
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=31.25 E-value=76 Score=24.29 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.5
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP------------------LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 25 (117)
+.|.|.|.-..|--|| .+||-|-|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 4699999999999998 578888776
No 57
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=30.62 E-value=98 Score=23.27 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=34.8
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
-|-.-.....+...|..-|..-+ ++-+..|+.|.+.|.++.++.-+++.
T Consensus 123 iWldp~n~~~~a~~I~~~L~~~d------P~~~~~y~~N~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSALD------PDNAATYAANLEAFNARLAELDATIK 171 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHC------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57666667777888877765432 33467888899999988887776654
No 58
>PF00779 BTK: BTK motif; InterPro: IPR001562 The Btk-type zinc finger or Btk motif (BM) is a conserved zinc-binding motif containing conserved cysteines and a histidine that is present in certain eukaryotic signalling proteins. The motif is named after Bruton's tyrosine kinase (Btk), an enzyme which is essential for B cell maturation in humans and mice [, ]. Btk is a member of the Tec family of protein tyrosine kinases (PTK). These kinases contain a conserved Tec homology (TH) domain between the N-terminal pleckstrin homology (PH) domain (IPR001849 from INTERPRO) and the Src homology 3 (SH3) domain (IPR001452 from INTERPRO). The N-terminal of the TH domain is highly conserved and known as the Btf motif, while the C-terminal region of the TH domain contains a proline-rich region (PRR). The Btk motif contains a conserved His and three Cys residues that form a zinc finger (although these differ from known zinc finger topologies), while PRRs are commonly involved in protein-protein interactions, including interactions with G proteins [, ]. The TH domain may be of functional importance in various signalling pathways in different species []. A complete TH domain, containing both the Btk and PRR regions, has not been found outside the Tec family; however, the Btk motif on its own does occur in other proteins, usually C-terminal to a PH domain (note that although a Btk motif always occurs C-terminal to a PH domain, not all PH domains are followed by a Btk motif). The crystal structures of Btk show that the Btk-type zinc finger has a globular core, formed by a long loop which is held together by a zinc ion, and that the Btk motif is packed against the PH domain []. The zinc-binding residues are a histidine and three cysteines, which are fully conserved in the Btk motif []. Proteins known to contain a Btk-type zinc finger include: Mammalian Bruton's tyrosine kinase (Btk), a protein tyrosine kinase involved in modulation of diverse cellular processes. Mutations affecting Btk are the cause of X-linked agammaglobulinemia (XLA) in humans and X-linked immunodeficiency in mice. Mammalian Tec, Bmx, and Itk proteins, which are tyrosine protein kinases of the Tec subfamily. Drosophila tyrosine-protein kinase Btk29A, which is required for the development of proper ring canals and of male genitalia and required for adult survival. Mammalian Ras GTPase-activating proteins (RasGAP), which regulate the activation of inactive GDP-bound Ras by converting GDP to GTP. ; GO: 0035556 intracellular signal transduction; PDB: 2E6I_A 2YS2_A 2Z0P_A 1B55_A 1BTK_B 1BWN_A.
Probab=29.94 E-value=19 Score=18.46 Aligned_cols=15 Identities=27% Similarity=0.935 Sum_probs=9.5
Q ss_pred cccccccCCCc-EEec
Q psy10005 28 MFHPNIYADGR-VCIS 42 (117)
Q Consensus 28 i~HpnV~~~G~-vcl~ 42 (117)
.|||.++.+|+ .|..
T Consensus 2 ~yHPg~~~~g~W~CC~ 17 (32)
T PF00779_consen 2 KYHPGAWRGGKWLCCK 17 (32)
T ss_dssp EE-SS-EETTCESSSS
T ss_pred CcCCCcccCCcCcCCC
Confidence 48999998887 4554
No 59
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.84 E-value=1.2e+02 Score=22.44 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHH
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 113 (117)
-|-.-.....+...|..-|..-+++ -+..|..|.+.|.+..++..+++
T Consensus 114 ~Wldp~~~~~~a~~I~~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~~ 161 (266)
T cd01018 114 IWLSPANAKIMAENIYEALAELDPQ------NATYYQANLDALLAELDALDSEI 161 (266)
T ss_pred cCcCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 6776677788888888777654433 26677778888887766665544
No 60
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=29.75 E-value=85 Score=24.11 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP------------------LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 25 (117)
+.|.|.|.-.+|.-|| .+||.|-|.
T Consensus 183 adG~y~F~TI~Pg~YpiP~dGp~G~lL~~~Grh~~RpaHIHf~ 225 (281)
T TIGR02438 183 DEGRFEITTMQPAPYQIPTDGPTGKFIAAAGGHPWRPAHLHLK 225 (281)
T ss_pred CCCCEEEEEECCCCcCCCCCCchHHHHHhcccCCCCCCEEEEE
Confidence 4699999999998887 578888776
No 61
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=29.71 E-value=1.4e+02 Score=18.36 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=26.0
Q ss_pred CCCCccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 83 DESGANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 83 ~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
-.+|-+.+|...|..-..+..+..+++.++|.-
T Consensus 23 DTHP~d~~Al~~y~~~~~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 23 DTHPDDQEALEYYNEYSKQRKQLKKEYEKRYGP 55 (78)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 347888899999888777888888888887754
No 62
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=29.67 E-value=2e+02 Score=22.73 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=22.7
Q ss_pred EEEEEEEcCCCCCCCCCeEEEe-ccccccc
Q psy10005 4 ITPAKVTFPSDYPLSPPKMQFT-CEMFHPN 32 (117)
Q Consensus 4 ~f~~~i~fp~~YP~~pP~v~f~-t~i~Hpn 32 (117)
..+-+|.|...||..||-+.|- ..-|+|-
T Consensus 66 ~l~W~viFd~~~p~~pPDfiF~eD~~F~pd 95 (333)
T PF06113_consen 66 YLKWDVIFDAQYPEFPPDFIFGEDDNFLPD 95 (333)
T ss_pred EEEEEEEEcCCCCCCCCCEEeCCCcCcCCC
Confidence 4456778999999999999996 3348884
No 63
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=29.09 E-value=87 Score=24.05 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.0
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP------------------LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 25 (117)
+.|.|.|+-..|--|| .+||-|-|.
T Consensus 175 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 217 (282)
T cd03460 175 ADGRYRFRSIMPSGYGVPPGGPTQQLLNALGRHGNRPAHIHFF 217 (282)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhhcCCCCCCCeEEEE
Confidence 4699999999999996 678887766
No 64
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=28.89 E-value=28 Score=24.00 Aligned_cols=12 Identities=42% Similarity=1.096 Sum_probs=10.0
Q ss_pred EcCCCCCCCCCe
Q psy10005 10 TFPSDYPLSPPK 21 (117)
Q Consensus 10 ~fp~~YP~~pP~ 21 (117)
.+|.|||+.+|-
T Consensus 109 ~LP~dYPMvAPn 120 (148)
T COG4957 109 GLPPDYPMVAPN 120 (148)
T ss_pred CCCCCCCccchH
Confidence 479999999885
No 65
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.54 E-value=1.3e+02 Score=22.44 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHH
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 113 (117)
-|-.-.....+...|...|..-++.. +..|+.|.+.|.++.+..-+++
T Consensus 103 ~Wldp~~~~~~a~~I~~~L~~~dP~~------~~~y~~N~~~~~~~L~~l~~~~ 150 (276)
T cd01016 103 IWFDVKLWKYAVKAVAEVLSEKLPEH------KDEFQANSEAYVEELDSLDAYA 150 (276)
T ss_pred cccCHHHHHHHHHHHHHHHHHHCccc------HHHHHHHHHHHHHHHHHHHHHH
Confidence 67666677788888888776543333 5678888888887766655543
No 66
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=27.11 E-value=1e+02 Score=22.77 Aligned_cols=25 Identities=24% Similarity=0.487 Sum_probs=21.4
Q ss_pred CCCEEEEEEEcCCCCCC-------CCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYPL-------SPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~-------~pP~v~f~ 25 (117)
+.|.|.|.-..|--||. +||-|-|.
T Consensus 121 ~~G~y~F~TI~Pg~Yp~p~~r~~~RppHIH~~ 152 (220)
T cd03464 121 DDGYYRFRTIKPGAYPWGNHPNAWRPAHIHFS 152 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 46999999999999964 89988776
No 67
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=26.30 E-value=1.1e+02 Score=22.99 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=14.3
Q ss_pred CCCEEEEEEEcCCCCC
Q psy10005 1 MDTITPAKVTFPSDYP 16 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP 16 (117)
+.|.|.|.-..|--||
T Consensus 149 ~~G~y~F~Ti~P~~Yp 164 (246)
T TIGR02465 149 ADGSYEVRTTMPVPYQ 164 (246)
T ss_pred CCCCEEEEEECCCCCC
Confidence 4799999999999997
No 68
>KOG0662|consensus
Probab=25.79 E-value=61 Score=23.98 Aligned_cols=57 Identities=19% Similarity=0.441 Sum_probs=40.9
Q ss_pred CCCCeEEEecccccccccC--CCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCCCCC
Q psy10005 17 LSPPKMQFTCEMFHPNIYA--DGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAEPNDE 84 (117)
Q Consensus 17 ~~pP~v~f~t~i~HpnV~~--~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~p~~~ 84 (117)
.+||-|-|-.+.|.-.|+- .|.|-..+.+- |.--.|...+.+-|..|..++-.|+.+
T Consensus 167 yrppdvlfgakly~tsidmwsagcifaelana-----------grplfpg~dvddqlkrif~~lg~p~ed 225 (292)
T KOG0662|consen 167 YRPPDVLFGAKLYSTSIDMWSAGCIFAELANA-----------GRPLFPGNDVDDQLKRIFRLLGTPTED 225 (292)
T ss_pred ccCcceeeeeehhccchHhhhcchHHHHHhhc-----------CCCCCCCCcHHHHHHHHHHHhCCCccc
Confidence 4789999999999988864 56665444332 112367778999999998888776544
No 69
>PF14798 Ca_hom_mod: Calcium homeostasis modulator
Probab=25.48 E-value=61 Score=24.40 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCccHHHHHHHHH-CHHHHHHHHHHHHHHHhcc
Q psy10005 85 SGANVDAAKMWRE-DREEFNKRANKLVRKTLGL 116 (117)
Q Consensus 85 ~~~n~~a~~~~~~-~~~~f~~~~~~~~~k~a~~ 116 (117)
+.+...=-..|.+ +++.|++.+++++++.|..
T Consensus 207 s~lQ~kyW~~Y~~~E~~lF~~~~~eHA~~lA~~ 239 (251)
T PF14798_consen 207 SFLQLKYWSIYIEKEQELFDETAKEHARKLAER 239 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444466665 6889999999999998864
No 70
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=25.44 E-value=1.1e+02 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=21.5
Q ss_pred CCCEEEEEEEcCCCCCC-------CCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYPL-------SPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP~-------~pP~v~f~ 25 (117)
+.|.|.|.-.+|--||. +||-|-|.
T Consensus 116 ~~G~y~F~TI~PG~Y~~p~~~~~~R~pHIH~~ 147 (220)
T TIGR02422 116 SDGYYRFRTIKPGPYPWGNHHNAWRPAHIHFS 147 (220)
T ss_pred CCccEEEEEECCCCccCCCCCCCCcCCeEEEE
Confidence 46999999999999975 89998775
No 71
>KOG2851|consensus
Probab=25.38 E-value=1.9e+02 Score=23.29 Aligned_cols=35 Identities=23% Similarity=0.552 Sum_probs=24.0
Q ss_pred ccC-CCcEEecCCCCCCCCCCCCCCCCCCCCCcc--cHHHHHHHHHHh
Q psy10005 33 IYA-DGRVCISILHAPGDDPMGYESSSERWSPVQ--SVEKILLSVVSM 77 (117)
Q Consensus 33 V~~-~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~--t~~~il~~i~~l 77 (117)
|.+ +|+||.++=-. .-+...|.. ||.+++..|.++
T Consensus 332 VHP~Tg~VcVPidv~----------~~d~Fdp~~vPti~~l~eEl~~~ 369 (412)
T KOG2851|consen 332 VHPKTGRVCVPIDVS----------KVDEFDPEKVPTISDLLEELESL 369 (412)
T ss_pred ccCCCCceEeecchh----------hccccCcccCCcHHHHHHHHhhc
Confidence 344 99999876311 012566665 799999999888
No 72
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.81 E-value=1.7e+02 Score=22.03 Aligned_cols=49 Identities=10% Similarity=0.250 Sum_probs=33.3
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
-|---..+..+...|..-|..-+++ -+..|++|.+.|.++.++..+++.
T Consensus 119 ~Wldp~~~~~~a~~Ia~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~~~ 167 (287)
T cd01137 119 AWMSPKNAIIYVKNIAKALSEADPA------NAETYQKNAAAYKAKLKALDEWAK 167 (287)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6866666777788887777543332 266788888888888776666543
No 73
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=24.14 E-value=79 Score=24.02 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEEEcC-----CCCCCCCCeEEEecccc
Q psy10005 4 ITPAKVTFP-----SDYPLSPPKMQFTCEMF 29 (117)
Q Consensus 4 ~f~~~i~fp-----~~YP~~pP~v~f~t~i~ 29 (117)
.|+.++++. -|-||+||+|+.+++-|
T Consensus 124 k~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 124 KFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred eeeceeeecccccccccccCCCceEeeeccc
Confidence 456666654 67899999999999855
No 74
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=23.89 E-value=71 Score=26.47 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=17.4
Q ss_pred CCEEEEEEEcC-----CCCCCCCCeEEEeccccccccc
Q psy10005 2 DTITPAKVTFP-----SDYPLSPPKMQFTCEMFHPNIY 34 (117)
Q Consensus 2 gg~f~~~i~fp-----~~YP~~pP~v~f~t~i~HpnV~ 34 (117)
||.|+++|.+- ++||. .||||+-+
T Consensus 358 ~~~yElDLVLRnN~Tsee~P~---------GIFHPH~e 386 (489)
T TIGR01239 358 DGKYELDLVLRDNQTSEEYPD---------GIFHPHQD 386 (489)
T ss_pred CCceEEEEEeecCCCccccCC---------ccccCcHh
Confidence 78899999984 44443 48999864
No 75
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=23.89 E-value=1.7e+02 Score=17.35 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=30.0
Q ss_pred HHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 73 SVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 73 ~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
.|+.|+..-++...+..+|.....+=-+.|...+-.-+.++|
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lA 47 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLA 47 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566555556778888888888878888877777666655
No 76
>KOG3696|consensus
Probab=23.80 E-value=54 Score=25.71 Aligned_cols=26 Identities=23% Similarity=0.590 Sum_probs=19.8
Q ss_pred CCCCCCCCeEEEecccccccccCCCc
Q psy10005 13 SDYPLSPPKMQFTCEMFHPNIYADGR 38 (117)
Q Consensus 13 ~~YP~~pP~v~f~t~i~HpnV~~~G~ 38 (117)
+.=+...|+|.|.-.+|||||-+.-+
T Consensus 303 dgs~eds~rvV~~V~lwhpevq~~~r 328 (334)
T KOG3696|consen 303 DGSSEDSPRVVFTVDLWHPEVQPAER 328 (334)
T ss_pred CCCcccCceEEEEEeccCcccccccc
Confidence 33455679999999999999965433
No 77
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=23.80 E-value=26 Score=30.74 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=0.0
Q ss_pred EEEEcCCCCCCCCCeEEEecccc
Q psy10005 7 AKVTFPSDYPLSPPKMQFTCEMF 29 (117)
Q Consensus 7 ~~i~fp~~YP~~pP~v~f~t~i~ 29 (117)
+.|++|.|||..+|.+.+.+.-|
T Consensus 718 l~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 718 LRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp -----------------------
T ss_pred eeEeCCCCCCccCCcCcccHHHh
Confidence 67889999999999998765543
No 78
>PF08405 Calici_PP_N: Viral polyprotein N-terminal; InterPro: IPR013614 This domain is found at the N terminus of non-structural viral polyproteins of the Caliciviridae subfamily. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity, 0044419 interspecies interaction between organisms
Probab=23.31 E-value=80 Score=24.88 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHCHHHHHHHHHHHHHHHhccC
Q psy10005 87 ANVDAAKMWREDREEFNKRANKLVRKTLGLD 117 (117)
Q Consensus 87 ~n~~a~~~~~~~~~~f~~~~~~~~~k~a~~~ 117 (117)
.+.+++..|.+.-..=+++||+.+.|+++.+
T Consensus 309 rdk~s~~~f~k~LD~EEekaRkls~k~~~p~ 339 (358)
T PF08405_consen 309 RDKNSGAAFMKTLDMEEEKARKLSTKSASPD 339 (358)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHhhccCCCc
Confidence 4556777777766777789999999988753
No 79
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=23.28 E-value=2.8e+02 Score=20.20 Aligned_cols=80 Identities=15% Similarity=0.305 Sum_probs=43.1
Q ss_pred CCCeEEEecccccccccC--------CCcEEecCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHHhhcCCCCCCCccH
Q psy10005 18 SPPKMQFTCEMFHPNIYA--------DGRVCISILHAPGDDPMGYESSSERWSPVQSVEKILLSVVSMLAEPNDESGANV 89 (117)
Q Consensus 18 ~pP~v~f~t~i~HpnV~~--------~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~t~~~il~~i~~ll~~p~~~~~~n~ 89 (117)
.||-|-+-..+.-..|++ .-.+|+.+=-+ +|.-.-+...++.-|..+..+.+.+.
T Consensus 105 VPplidl~ngVLigSVSP~iR~k~F~k~~~C~TlEvP-------------~~~~~~~~~~~~~iL~~~~~s~~Rde---- 167 (193)
T PF09892_consen 105 VPPLIDLGNGVLIGSVSPIIRRKYFKKEDFCMTLEVP-------------NWKSDESKEEVLEILEIIKESKNRDE---- 167 (193)
T ss_pred CCCeeeccCCeEEeecCHHHHhcccCccceEEEEEcC-------------CCccHHHHHHHHHHHHHHhcCCCHHH----
Confidence 477777766655444433 34589875433 67655555555554444444444432
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 90 DAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 90 ~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
.-+-.......=.++|++.+++|-+
T Consensus 168 -~i~kl~~~YP~q~~~A~~~a~~f~g 192 (193)
T PF09892_consen 168 -FIEKLKKKYPEQAKKAKEYAKEFYG 192 (193)
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 2222333344445667777777644
No 80
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.09 E-value=5.2e+02 Score=23.31 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHhh-----cCCCCCCC-ccHH--HHHHHHH--------CHHHHHHHHHHHHHHHhc
Q psy10005 65 QSVEKILLSVVSML-----AEPNDESG-ANVD--AAKMWRE--------DREEFNKRANKLVRKTLG 115 (117)
Q Consensus 65 ~t~~~il~~i~~ll-----~~p~~~~~-~n~~--a~~~~~~--------~~~~f~~~~~~~~~k~a~ 115 (117)
+|+-++|..-+.|- .-|..++. +-++ .-+++.. .|+.|.+++.+|.++|.+
T Consensus 56 ~tl~D~l~RykRM~G~~vl~~pG~DhAGIaTq~~VEk~l~~~g~~r~d~gRe~Fl~~~weWk~e~~~ 122 (877)
T COG0525 56 YTLQDILARYKRMRGYNVLWPPGTDHAGIATQVVVEKQLAAEGITRHDLGREEFLKKCWEWKEESGG 122 (877)
T ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCCCchHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHHHHH
Confidence 57888888877764 44777764 2223 3334421 599999999999999875
No 81
>PF06468 Spond_N: Spondin_N; InterPro: IPR009465 This conserved region is found in the N-terminal half of several Spondin proteins []. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells [].; PDB: 3D34_A 3Q13_A.
Probab=22.78 E-value=86 Score=22.63 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=16.2
Q ss_pred CEEEEEEE-------cCCCCCCCCCeEEEecc
Q psy10005 3 TITPAKVT-------FPSDYPLSPPKMQFTCE 27 (117)
Q Consensus 3 g~f~~~i~-------fp~~YP~~pP~v~f~t~ 27 (117)
.+|++.++ +|++||...|...|..-
T Consensus 2 A~Y~~~f~g~Ws~~~hpk~yP~~~~~~~fSpl 33 (196)
T PF06468_consen 2 ATYEVTFEGIWSRNTHPKDYPSNRPPAHFSPL 33 (196)
T ss_dssp EEEEEEEEEE-STTTS-TT--CTSSCSEEEEE
T ss_pred ceEEEEEEEEECCccCcccccccccccccchh
Confidence 35777776 89999998777777754
No 82
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=22.37 E-value=1.8e+02 Score=17.04 Aligned_cols=30 Identities=27% Similarity=0.120 Sum_probs=24.8
Q ss_pred CccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Q psy10005 86 GANVDAAKMWREDREEFNKRANKLVRKTLG 115 (117)
Q Consensus 86 ~~n~~a~~~~~~~~~~f~~~~~~~~~k~a~ 115 (117)
.++.+++.....+-+.+.+.+-+-+.+|+.
T Consensus 19 ris~~a~~~l~~~~e~rl~~i~~~A~k~~~ 48 (65)
T smart00803 19 NLSDEAAKLLAEDVEYRIKEIVQEALKFMR 48 (65)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999888888888888887764
No 83
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=21.19 E-value=1.6e+02 Score=22.35 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.6
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP------------------LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 25 (117)
+.|.|.|.-..|--|| .+||-|-|.
T Consensus 155 ~~G~y~f~Ti~P~~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 197 (256)
T cd03458 155 EDGRYRFRTIRPVPYPIPPDGPTGELLEALGRHPWRPAHIHFM 197 (256)
T ss_pred CCCCEEEEEECCCCccCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 4699999999998886 578888776
No 84
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=20.86 E-value=2.2e+02 Score=21.13 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=31.3
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHH
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~ 113 (117)
-|-.-.....+...|...|..-++. -+..|..|.+.|.+...+..+++
T Consensus 115 ~Wldp~~~~~~a~~Ia~~L~~~dP~------~~~~y~~N~~~~~~~L~~l~~~~ 162 (282)
T cd01017 115 VWLSPVLAIQQVENIKDALIKLDPD------NKEYYEKNAAAYAKKLEALDQEY 162 (282)
T ss_pred cccCHHHHHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 5766666777788887777543322 25677778888877766555544
No 85
>PF09458 H_lectin: H-type lectin domain; InterPro: IPR019019 The H-type lectin domain is a unit of six beta chains, combined into a homo-hexamer. It is involved in self/non-self recognition of cells, through binding with carbohydrates []. It is sometimes found in association with the C-terminal domain of coagulation factor F5/8 (IPR000421 from INTERPRO). ; GO: 0005529 sugar binding, 0007155 cell adhesion; PDB: 2CGY_A 2CGZ_A 2CCV_A 2CE6_A 2VME_B 2VMC_A 2VMD_A 2VM9_A 2W94_A 2WN3_C ....
Probab=20.82 E-value=1.3e+02 Score=17.33 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=11.9
Q ss_pred EEEEEEEcCCCCCCCCCeEEEe
Q psy10005 4 ITPAKVTFPSDYPLSPPKMQFT 25 (117)
Q Consensus 4 ~f~~~i~fp~~YP~~pP~v~f~ 25 (117)
.+...|.|+..|.. ||+|..-
T Consensus 2 ~~~~~I~F~~~F~~-~P~V~~~ 22 (72)
T PF09458_consen 2 EYSQTITFSKPFSS-PPQVIVS 22 (72)
T ss_dssp EEEEEEE-SS--SS---EEEEE
T ss_pred ceEEEeEcChhcCC-CCEEEEE
Confidence 35678999998887 8887655
No 86
>COG4468 GalT Galactose-1-phosphate uridyltransferase [Carbohydrate transport and metabolism]
Probab=20.66 E-value=94 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.494 Sum_probs=17.6
Q ss_pred CCEEEEEEEcCC-----CCCCCCCeEEEeccccccccc
Q psy10005 2 DTITPAKVTFPS-----DYPLSPPKMQFTCEMFHPNIY 34 (117)
Q Consensus 2 gg~f~~~i~fp~-----~YP~~pP~v~f~t~i~HpnV~ 34 (117)
||.|+++|++-+ .||. .||||+-.
T Consensus 363 ~~~yELDlVLRnNrT~e~yPd---------GIFHPH~e 391 (503)
T COG4468 363 GGLYELDLVLRNNRTSEEYPD---------GIFHPHQE 391 (503)
T ss_pred CCeeEEEEEEecCCccccCCC---------cccCCcHH
Confidence 799999999854 4553 48888753
No 87
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=20.65 E-value=1.6e+02 Score=22.15 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=20.4
Q ss_pred CCCEEEEEEEcCCCCC------------------CCCCeEEEe
Q psy10005 1 MDTITPAKVTFPSDYP------------------LSPPKMQFT 25 (117)
Q Consensus 1 ~gg~f~~~i~fp~~YP------------------~~pP~v~f~ 25 (117)
+.|.|.|.-..|--|| .+||-|-|.
T Consensus 150 ~~G~y~F~Ti~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 192 (247)
T cd03462 150 EDGRYEVRTTVPVPYQIPNDGPTGALLEAMGGHSWRPAHVHFK 192 (247)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhcccCCCCCCeEEEE
Confidence 4689999999998885 577888776
No 88
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=20.38 E-value=1.9e+02 Score=22.11 Aligned_cols=49 Identities=8% Similarity=0.130 Sum_probs=32.9
Q ss_pred CCCCcccHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHCHHHHHHHHHHHHHHHh
Q psy10005 60 RWSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114 (117)
Q Consensus 60 ~W~p~~t~~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~~k~a 114 (117)
-|-.-.....+...|..-|..-++ +-+..|++|.+.|.++.++.-+++.
T Consensus 147 iWldp~~~~~~a~~I~~~L~~~dP------~~~~~y~~N~~~~~~~L~~l~~~~~ 195 (311)
T PRK09545 147 IWLSPEIARATAVAIHDKLVELMP------QSKAKLDANLKDFEAQLAQTDKQIG 195 (311)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCh------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676666777778888777754332 2367788888888877766555443
Done!