RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10005
(117 letters)
>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme. Proteins destined
for proteasome-mediated degradation may be
ubiquitinated. Ubiquitination follows conjugation of
ubiquitin to a conserved cysteine residue of UBC
homologues. TSG101 is one of several UBC homologues that
lacks this active site cysteine.
Length = 139
Score = 142 bits (360), Expect = 5e-45
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 12/105 (11%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ FP DYP PPK++FT +++HPN+ G +C+ IL E WSP
Sbjct: 47 KLDIEFPEDYPFKPPKVKFTTKIYHPNVDPSGEICLDILK------------DENWSPAL 94
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLV 110
++E++LLS+ S+L+EPN E N +AAK++R++REEF K+ + V
Sbjct: 95 TIEQVLLSIQSLLSEPNPEDPLNAEAAKLYRKNREEFEKKVREYV 139
>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 153
Score = 140 bits (356), Expect = 2e-44
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 13/109 (11%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ FP DYP PPK++FT ++FHPN+ G VC+ IL +RWSPV
Sbjct: 56 KLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILK-------------DRWSPVY 102
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTL 114
++E ILLS+ S+L PN +S N +AA ++RED+EE+ K+ + V+K
Sbjct: 103 TLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYA 151
>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc)
domain. This is part of the ubiquitin-mediated protein
degradation pathway in which a thiol-ester linkage forms
between a conserved cysteine and the C-terminus of
ubiquitin and complexes with ubiquitin protein ligase
enzymes, E3. This pathway regulates many fundamental
cellular processes. There are also other E2s which form
thiol-ester linkages without the use of E3s as well as
several UBC homologs (TSG101, Mms2, Croc-1 and similar
proteins) which lack the active site cysteine essential
for ubiquitination and appear to function in DNA repair
pathways which were omitted from the scope of this CD.
Length = 141
Score = 136 bits (344), Expect = 1e-42
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 12/104 (11%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ FP DYP PPK++F +++HPN+ +G++C+SIL WSP +
Sbjct: 50 LDIEFPEDYPFKPPKVRFVTKIYHPNVDENGKICLSILKTH------------GWSPAYT 97
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLV 110
+ +LLS+ S+L EPN N +AAK+++E+REEF K+A +
Sbjct: 98 LRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141
>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain
homologues. Proteins destined for proteasome-mediated
degradation may be ubiquitinated. Ubiquitination follows
conjugation of ubiquitin to a conserved cysteine residue
of UBC homologues. This pathway functions in regulating
many fundamental processes required for cell
viability.TSG101 is one of several UBC homologues that
lacks this active site cysteine.
Length = 145
Score = 131 bits (331), Expect = 1e-40
Identities = 41/110 (37%), Positives = 68/110 (61%), Gaps = 12/110 (10%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ FP DYP PPK++F +++HPN+ + G +C+ IL E+WSP
Sbjct: 48 KLTIEFPEDYPFKPPKVKFITKIYHPNVDSSGEICLDILKQ------------EKWSPAL 95
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115
++E +LLS+ S+L+EPN +S N DAA++++++REEF K+A + +K
Sbjct: 96 TLETVLLSLQSLLSEPNPDSPLNADAAELYKKNREEFKKKAREWTKKYAE 145
>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional.
Length = 147
Score = 76.7 bits (188), Expect = 3e-19
Identities = 35/104 (33%), Positives = 62/104 (59%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP DYP PPK+QFT +++HPNI ++G +C+ IL ++WSP +V
Sbjct: 54 ILFPPDYPFKPPKVQFTTKIYHPNINSNGSICLDILR-------------DQWSPALTVS 100
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++E+R + A + ++
Sbjct: 101 KVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQR 144
>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional.
Length = 152
Score = 57.5 bits (139), Expect = 1e-11
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 13/95 (13%)
Query: 12 PSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVEKIL 71
P YP+ PPK++F +++HPNI GR+C+ IL ++WSP + +L
Sbjct: 58 PEQYPMEPPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVL 104
Query: 72 LSVVSMLAEPNDESGANVDAAKMWREDREEFNKRA 106
LS+ ++L+ P + + A ++ +R + K A
Sbjct: 105 LSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVA 139
>gnl|CDD|218742 pfam05773, RWD, RWD domain. This domain was identified in WD40
repeat proteins and Ring finger domain proteins. The
function of this domain is unknown. GCN2 is the
alpha-subunit of the only translation initiation factor
(eIF2 alpha) kinase that appears in all eukaryotes. Its
function requires an interaction with GCN1 via the
domain at its N-terminus, which is termed the RWD
domain after three major RWD-containing proteins: RING
finger-containing proteins, WD-repeat-containing
proteins, and yeast DEAD (DEXD)-like helicases. The
structure forms an alpha + beta sandwich fold
consisting of two layers: a four-stranded antiparallel
beta-sheet, and three side-by-side alpha-helices.
Length = 113
Score = 28.8 bits (65), Expect = 0.30
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 8 KVTFPSDYPLSPPKMQFTCE 27
T P DYP PPK+ +
Sbjct: 55 TFTLPEDYPDEPPKISLSSP 74
>gnl|CDD|189000 cd08662, M13, Peptidase family M13 includes neprilysin,
endothelin-converting enzyme I. M13 family of
metallopeptidases includes neprilysin (neutral
endopeptidase, NEP, enkephalinase, CD10, CALLA, EC
3.4.24.11), endothelin-converting enzyme I (ECE-1, EC
3.4.24.71), erythrocyte surface antigen KELL (ECE-3),
phosphate-regulating gene on the X chromosome (PHEX),
soluble secreted endopeptidase (SEP), and damage-induced
neuronal endopeptidase (DINE)/X-converting enzyme (XCE).
These proteins consist of a short N-terminal cytoplasmic
domain, a single transmembrane helix, and a larger
C-terminal extracellular domain containing the active
site. Proteins in this family fulfill a broad range of
physiological roles due to the greater variation in the
S2' subsite allowing substrate specificity. NEP is
expressed in a variety of tissues including kidney and
brain, and is involved in many physiological and
pathological processes, including blood pressure and
inflammatory response. It degrades a wide array of
substrates such as substance P, enkephalins,
cholecystokinin, neurotensin and somatostatin. It is an
important enzyme in the regulation of amyloid-beta
(Abeta) protein that forms amyloid plaques that are
associated with Alzeimers disease (AD). ECE-1 catalyzes
the final rate-limiting step in the biosynthesis of
endothelins via post-translational conversion of the
biologically inactive big endothelins. Like NEP, it also
hydrolyses bradykinin, substance P, neurotensin and
Abeta. Endothelin-1 overproduction has been implicated
in various diseases, including stroke, asthma,
hypertension, and cardiac and renal failure. Kell is a
homolog of NEP and constitutes a major antigen on human
erythrocytes; it preferentially cleaves big endothelin-3
to produce bioactive endothelin-3, but is also known to
cleave substance P and neurokinin A. PHEX forms a
complex interaction with fibroblast growth factor 23
(FGF23) and matrix extracellular phosphoglycoprotein,
causing bone mineralization. A loss-of-function mutation
in PHEX disrupts this interaction leading to
hypophosphatemic rickets; X-linked hypophosphatemic
(XLH) rickets is the most common form of metabolic
rickets. ECEL1 is a brain metalloprotease involved in
the critical role in the nervous regulation of the
respiratory system, while DINE (damage induced neuronal
endopeptidase) is abundantly expressed in the
hypothalamus and its expression responds to nerve injury
as well. Thus, majority of these M13 proteases are prime
therapeutic targets for selective inhibition.
Length = 611
Score = 28.4 bits (64), Expect = 0.83
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 83 DESGANVDA---AKMW--REDREEFNKRANKLVR 111
D+ G D + W EDR+ F +R LV
Sbjct: 456 DDQGRQFDEDGNLRNWWTPEDRKAFEERTQCLVD 489
>gnl|CDD|224250 COG1331, COG1331, Highly conserved protein containing a thioredoxin
domain [Posttranslational modification, protein
turnover, chaperones].
Length = 667
Score = 28.5 bits (64), Expect = 0.87
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 92 AKMWREDREEFNKRANKLVR 111
+ WREDREE + A +++
Sbjct: 147 RETWREDREELLQSAERVLE 166
>gnl|CDD|203253 pfam05464, Phi-29_GP4, Phi-29-like late genes activator (early
protein GP4). This family consists of phi-29-like late
genes activator (or early protein GP4). This protein is
thought to be a positive regulator of late transcription
and may function as a sigma like component of the host
RNA polymerase.
Length = 123
Score = 27.6 bits (61), Expect = 1.0
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 95 WREDREEFNKRANKLVRKTLGLD 117
++E RE+FNK+ ++ +D
Sbjct: 40 YQEYREKFNKKIERVAVTPWNMD 62
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 27.3 bits (60), Expect = 1.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 77 MLAEPNDESGANVDAAKMWREDREEFNKRANKLV 110
M ++ N+D AK W E+++E +KRA + +
Sbjct: 289 MCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFM 322
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 26.8 bits (60), Expect = 3.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 99 REEFNKRANKLVRKTLG 115
REEF K + LV+KTL
Sbjct: 277 REEFEKLIDPLVKKTLN 293
>gnl|CDD|216499 pfam01431, Peptidase_M13, Peptidase family M13. Mammalian enzymes
are typically type-II membrane anchored enzymes which
are known, or believed to activate or inactivate
oligopeptide (pro)-hormones such as opioid peptides. The
family also contains a bacterial member believed to be
involved with milk protein cleavage.
Length = 206
Score = 26.6 bits (59), Expect = 3.2
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 83 DESGANVDAA-----KMWREDREEFNKRANKLVR 111
D+ G D ED EF A L+
Sbjct: 49 DDQGIQFDKDGNLCGWWTDEDEAEFKDAAQCLID 82
>gnl|CDD|202571 pfam03190, DUF255, Protein of unknown function, DUF255.
Length = 163
Score = 26.4 bits (59), Expect = 3.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 92 AKMWREDREEFNKRANKLVR 111
A+ WREDRE+ + A ++
Sbjct: 141 AEAWREDREKLLESAERITE 160
>gnl|CDD|133907 PHA00510, PHA00510, transcriptional regulator.
Length = 125
Score = 26.1 bits (57), Expect = 4.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 95 WREDREEFNKRANKLVRKTLGLD 117
++E+RE+FNK+ ++L +D
Sbjct: 41 YQENREKFNKKISRLKDTPSNMD 63
>gnl|CDD|201244 pfam00463, ICL, Isocitrate lyase family.
Length = 526
Score = 26.0 bits (57), Expect = 5.1
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 57 SSERWSPVQ---SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
S RW + S E I VS E +NV A K+W+ F N T
Sbjct: 10 SDPRWRGTKRPYSAEDI----VSKRGNLKIEYPSNVQAKKLWKLLEGHF---KNGTASFT 62
Query: 114 LGL 116
G
Sbjct: 63 YGA 65
>gnl|CDD|235393 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 25.8 bits (58), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 85 SGANVDAAKMWREDREEFNKRANKL 109
S +D A EDRE F+K KL
Sbjct: 660 SPDAIDLA----EDRERFSKLLEKL 680
>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM)
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
GEM interacts with CDT1, a pre-replication complex
component that is involved in DNA replication, and with
TTG1 (Transparent Testa GLABRA 1), a transcriptional
regulator of epidermal cell fate. GEM controls the
level of histone H3K9 methylation at the promoters of
the GLABRA 2 and CAPRICE (CPC) genes, which are
essential for epidermis patterning. GEM also regulates
cell division in different root cell types. GEM
regulates proliferation-differentiation decisions by
integrating DNA replication, cell division and
transcriptional controls. The GRAM domain is found in
glucosyltransferases, myotubularins and other putative
membrane-associated proteins. The GRAM domain is part
of a larger motif with a pleckstrin homology (PH)
domain fold.
Length = 127
Score = 25.1 bits (56), Expect = 6.5
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 4 ITPAKVTFPSDYPLS--PPKMQFT 25
I+ AKV F SD PLS P Q
Sbjct: 43 ISTAKVAFCSDRPLSFTSPSGQLV 66
>gnl|CDD|227439 COG5108, RPO41, Mitochondrial DNA-directed RNA polymerase
[Transcription].
Length = 1117
Score = 25.7 bits (56), Expect = 7.0
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 84 ESGANVDAAKMWREDREEFNKRANKLVRKTL 114
E A A +MW+ E F KR K K
Sbjct: 257 EKSAIALAEEMWKAGIERFEKRGEKNREKNA 287
>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing
proteins and DEXDc-like helicases subfamily related to
the UBCc domain.
Length = 107
Score = 25.0 bits (55), Expect = 7.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 8 KVTFPSDYPLSPPKMQFT 25
+V P +YP P +
Sbjct: 46 QVKLPENYPDEAPPISLL 63
>gnl|CDD|129553 TIGR00461, gcvP, glycine dehydrogenase (decarboxylating). This
apparently ubiquitous enzyme is found in bacterial,
mammalian and plant sources. The enzyme catalyzes the
reaction: GLYCINE + LIPOYLPROTEIN =
S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of
the glycine decarboxylase multienzyme complex (GDC)
consisting of four proteins P, H, L and T. Active site
in E.coli is located as the (K) residues at position 713
of the SEED alignment [Energy metabolism, Amino acids
and amines].
Length = 939
Score = 25.6 bits (56), Expect = 7.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHP---NIYADG 37
D + VT+PS + + P +Q C++ H +Y DG
Sbjct: 627 DELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDG 665
>gnl|CDD|233577 TIGR01786, TonB-hemlactrns, TonB-dependent
hemoglobin/transferrin/lactoferrin receptor family
protein. This model represents a family of
TonB-dependent outer membrane receptor/transporters
acting on iron-containing proteins such as hemoglobin,
transferrin and lactoferrin. Two subfamily models with a
narrower scope are contained within this model, the
heme/hemoglobin receptor family protein model
(TIGR01785) and the transferrin/lactoferrin receptor
family model (TIGR01776). Accessions which score above
trusted to this model while not scoring above trusted to
the more specific models are most likely to be
hemoglobin transporters. Nearly all of the species
containing trusted hits to this model have access to
hemoglobin, transferrin or lactoferrin or related
proteins in their biological niche [Transport and
binding proteins, Cations and iron carrying compounds,
Transport and binding proteins, Porins].
Length = 715
Score = 25.4 bits (56), Expect = 7.9
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 2/25 (8%)
Query: 1 MDTITPAKVTFPSDYPLSPPKMQFT 25
++ ITP KV Y P ++
Sbjct: 596 LNAITPLKVVLGLGYDH--PDEKWG 618
>gnl|CDD|99828 cd05785, DNA_polB_like2_exo, Uncharacterized bacterial subgroup of
the DEDDy 3'-5' exonuclease domain of family-B DNA
polymerases. A subfamily of the 3'-5' exonuclease
domain of family-B DNA polymerases. This subfamily is
composed of uncharacterized bacterial family-B DNA
polymerases. Family-B DNA polymerases contain an
N-terminal DEDDy DnaQ-like exonuclease domain in the
same polypeptide chain as the polymerase domain, similar
to family-A DNA polymerases. This exonuclease domain
contains three sequence motifs termed ExoI, ExoII and
ExoIII, with a specific YX(3)D pattern at ExoIII. These
motifs are involved in metal binding and catalysis. The
exonuclease domain of family-B DNA polymerases has a
fundamental role in proofreading activity. It contains a
beta hairpin structure that plays an important role in
active site switching in the event of a nucleotide
misincorporation. Family-B DNA polymerases are
predominantly involved in DNA replication and DNA
repair.
Length = 207
Score = 25.4 bits (56), Expect = 8.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 78 LAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
LA P+ A++WR D A VR+T GL
Sbjct: 167 LASPDRTYIDGRQIAEVWRSDPARLLAYALDDVRETEGL 205
>gnl|CDD|222765 pfam14461, Prok-E2_B, Prokaryotic E2 family B. A member of the
E2/UBC superfamily of proteins found in several
bacteria. The active site residues are similar to the
eukaryotic E2 proteins but lack the conserved
asparagine. Members of this family are usually fused to
an E1 domain at the C-terminus. The protein is usually
in the gene neighborhood of a gene encoding a member of
the pol-beta nucleotidyltransferase superfamily. Many
of the operons in this family are in ICE-like mobile
elements and plasmids.
Length = 131
Score = 25.1 bits (55), Expect = 8.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 11 FPSDYPLSPPKMQFTC--EMFHPNIYADGRVC 40
P D+PL PK+ E P++ +DG +C
Sbjct: 44 IPDDFPLVLPKVFLADREERLLPHVESDGTLC 75
>gnl|CDD|153335 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe
Cdc15, and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Schizosaccharomyces pombe Cdc15 and Imp2, and similar
proteins. These proteins contain an N-terminal F-BAR
domain and a C-terminal SH3 domain. S. pombe Cdc15 and
Imp2 play both distinct and overlapping roles in the
maintenance and strengthening of the contractile ring at
the division site, which is required in cell division.
Cdc15 is a component of the actomyosin ring and is
required in normal cytokinesis. Imp2 colocalizes with
the medial ring during septation and is required for
normal septation. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 236
Score = 25.3 bits (56), Expect = 8.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 100 EEFNKRANKLVRKTLG 115
EE+ KR KL RK+LG
Sbjct: 36 EEYAKRLEKLSRKSLG 51
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.398
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,829,282
Number of extensions: 472192
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 32
Length of query: 117
Length of database: 10,937,602
Length adjustment: 80
Effective length of query: 37
Effective length of database: 7,389,282
Effective search space: 273403434
Effective search space used: 273403434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.2 bits)