RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10005
(117 letters)
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 192 bits (489), Expect = 1e-64
Identities = 94/111 (84%), Positives = 105/111 (94%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
PA ++FP DYPLSPPKM+FTCEMFHPNIY DGRVCISILHAPGDDPMGYESS+ERWSPVQ
Sbjct: 54 PAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQ 113
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
SVEKILLSVVSMLAEPNDESGANVDA+KMWR+DRE+F K A ++V+K+LGL
Sbjct: 114 SVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 192 bits (489), Expect = 1e-64
Identities = 71/111 (63%), Positives = 87/111 (78%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
AK+ FP DYPLSPPK+ FT + HPNIY +G VCISILH+PGDDP YE + ERWSPVQ
Sbjct: 55 NAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQ 114
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
SVEKILLSV+SML+EPN ESGAN+DA +WR++R EF ++ + K+LG
Sbjct: 115 SVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLGF 165
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 176 bits (447), Expect = 4e-58
Identities = 61/103 (59%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A +TFP DYPL PPKM+F E++HPN+ +G VCISILH PG+D GYE ERW P+ +
Sbjct: 69 AHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHT 128
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDRE-EFNKRANK 108
VE I++SV+SMLA+PN +S ANVDAAK WREDR EF ++ +
Sbjct: 129 VETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 171
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 176 bits (447), Expect = 5e-58
Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 2/109 (1%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A++ FP DYP SPP +F +M+HPNIY G VCISILH P DDP E SERW+P Q+
Sbjct: 59 ARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQN 118
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRA--NKLVRKT 113
V ILLSV+S+L EPN S ANVDA+ M+R+ +E K ++RK
Sbjct: 119 VRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQ 167
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 153 bits (388), Expect = 3e-49
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 11/107 (10%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ FP +YP PPK +FT +FHPN+Y G VC+SIL+ E W P
Sbjct: 65 KLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAI 113
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++++ILL + +L +PN S A +A M+++D+ E+ KR R+
Sbjct: 114 TIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARE 160
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 152 bits (386), Expect = 6e-49
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
P V +P++YP PPK++F +HPN+Y G +C+SIL+ + W P
Sbjct: 59 PITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNED-----------QDWRPAI 107
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++++I+L V +L PN S A A + + ++ E++K+ ++
Sbjct: 108 TLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQ 154
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 152 bits (386), Expect = 6e-49
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 11/107 (10%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
++ F DYP SPPK +F +FHPN+Y G VC+SIL + W P
Sbjct: 62 KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEED-----------KDWRPAI 110
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++++ILL + +L EPN +S A +A ++ ++R E+ KR +K
Sbjct: 111 TIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKK 157
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 149 bits (379), Expect = 5e-48
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ F DYP PP ++F MFHPNIYADG +C+ IL +WSP+
Sbjct: 54 KLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIY 100
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
V IL S+ S+L +PN S AN +AA+M+ E + E+N+R +V ++
Sbjct: 101 DVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 150 bits (380), Expect = 6e-48
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ F +YP PP ++F EMFHPN+YA+G +C+ IL RW+P
Sbjct: 54 RLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTY 100
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
V IL S+ S+ +PN S ANV+AA ++++ + ++ KR + V K
Sbjct: 101 DVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEK 147
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 148 bits (375), Expect = 3e-47
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYA-DGRVCISILHAPGDDPMGYESSSERWSPV 64
+ F S+Y +PP ++F FHPN+ G+ CI L P E+W+
Sbjct: 73 QLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNP-----------EKWNTN 121
Query: 65 QSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVR 111
++ ILL++ ML+ P E+ N++AA++ +D + R
Sbjct: 122 YTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLFNR 168
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 147 bits (373), Expect = 8e-47
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ P Y + PPK++ +++HPNI G +C+S+L D W+P ++
Sbjct: 65 FETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDG-------TGWAPTRT 117
Query: 67 VEKILLSVVSMLAE-PNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ ++ + S+ + N + N++AA+ D+E+F + + +++
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKR 164
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 143 bits (362), Expect = 2e-45
Identities = 29/106 (27%), Positives = 59/106 (55%), Gaps = 12/106 (11%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
++ FP++YP PPK+ F +++HPNI G+VC+ ++ +E W P
Sbjct: 53 IEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVIS------------AENWKPATK 100
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++++ S+++++ +P E D A+ + +DR++F K A + +K
Sbjct: 101 TDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 146
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 142 bits (360), Expect = 5e-45
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+++FP +YP PP ++FT +++HPN+ +G++C+ I+ SE W P
Sbjct: 55 LRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS------------SENWKPCTK 102
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++L ++ ++ PN +D A + ++ E F K A + +
Sbjct: 103 TCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLR 148
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 141 bits (358), Expect = 1e-44
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ FPSDYP PP ++FT +HPN+ G +C+ IL E W+
Sbjct: 60 LTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-------------ENWTASYD 106
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
V ILLS+ S+L EPN+ S N AA MW ++ E+ K ++ +
Sbjct: 107 VRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKT 151
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 137 bits (347), Expect = 4e-43
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL +WSP ++
Sbjct: 56 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTI 102
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE +N+ A + +K
Sbjct: 103 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 147
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 137 bits (346), Expect = 7e-43
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
K+ D+P SPPK F ++FHPN+ A+G +C+++L W+ +
Sbjct: 65 KLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK-------------RDWTAELGI 111
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+LL++ +L PN ES N +A ++ E+ EE+ RA L
Sbjct: 112 RHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI 156
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 136 bits (345), Expect = 2e-42
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ FPS YP + P ++F +HPN+ G + + IL E+WS +
Sbjct: 81 LSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK-------------EKWSALYD 127
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
V ILLS+ S+L EPN +S N AA++W+ + F K + K
Sbjct: 128 VRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSK 172
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 135 bits (342), Expect = 3e-42
Identities = 36/105 (34%), Positives = 63/105 (60%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL +WSP ++
Sbjct: 71 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTI 117
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE++N+ A + +K
Sbjct: 118 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQK 162
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 135 bits (341), Expect = 4e-42
Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 20/112 (17%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
V F DYP PP ++F ++ P + +G +C +++ + W+P Q
Sbjct: 73 LSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVN-------------DFWTPDQH 119
Query: 67 VEKILLSVVSMLA---EPNDESGANVDAAKMWREDREEFNKRANKLVRKTLG 115
++ V+ + + + N +A + ++F R VR+ G
Sbjct: 120 ASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAAR----VRRGRG 167
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 135 bits (341), Expect = 6e-42
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 7 AKVTFPSDYPLSPPKMQF-TCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPV 64
+ PS YP++PPK+ F + H N+ A G +C++IL E W+PV
Sbjct: 69 ILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILK------------PEEWTPV 116
Query: 65 QSVEKILLSVVSMLAEPNDESGANVDAAKMWRE-DREEFNKRANKLVRK 112
+ + +V +L EP +S +VD + R D + + +
Sbjct: 117 WDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAE 165
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 134 bits (339), Expect = 1e-41
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+V P YP PP+++F ++HPNI + GR+C+ +L P W P ++
Sbjct: 56 EVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKG---------AWRPSLNI 106
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+L S+ +++EPN + D + ++ ++ F K A + K
Sbjct: 107 ATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 151
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 133 bits (338), Expect = 1e-41
Identities = 35/105 (33%), Positives = 61/105 (58%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ FPSDYP PPK+ FT +++HPNI + G +C+ IL ++WSP ++
Sbjct: 73 NIHFPSDYPFKPPKVNFTTKIYHPNINSQGAICLDILK-------------DQWSPALTI 119
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A +++ DR +++ A + +K
Sbjct: 120 SKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQK 164
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 130 bits (328), Expect = 2e-40
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P YP+ PPK++F +++HPNI GR+C+ IL ++WSP +
Sbjct: 53 ELFLPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILK-------------DKWSPALQI 99
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+LLS+ ++L+ P + + A+ +++D+ + A + +
Sbjct: 100 RTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKI 144
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 130 bits (328), Expect = 3e-40
Identities = 28/105 (26%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P +YP++ PK++F +++HPN+ GR+C+ IL ++WSP +
Sbjct: 57 ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-------------DKWSPALQI 103
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+LLS+ ++L+ PN + D A+ W+ + + + A R
Sbjct: 104 RTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 148
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 126 bits (319), Expect = 7e-39
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
++ P DYP+ PK++F +++HPNI GR+C+ +L WSP +
Sbjct: 57 ELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK-------------TNWSPALQI 103
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+LLS+ ++LA PN D A+ W ++ + +A + +
Sbjct: 104 RTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 148
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 125 bits (316), Expect = 2e-38
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ P +YP PPKMQF +++HPNI G +C+ IL WSPV +
Sbjct: 54 DIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK-------------NAWSPVIT 100
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ L+S+ ++L P + + A+ + DRE FNK A R
Sbjct: 101 LKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 146
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 125 bits (316), Expect = 3e-38
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
YP PPK++ ++HPNI +G VC++IL E W PV ++
Sbjct: 56 SFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNIL-------------REDWKPVLTI 102
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
I+ + + EPN E N +AA++ + +R F + + +R
Sbjct: 103 NSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 125 bits (316), Expect = 5e-38
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+TF +YP PPK+ F ++H NI + G +C+ IL + WSP ++
Sbjct: 100 DITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILK-------------DNWSPALTI 146
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L + N A + +R E ++ A + ++
Sbjct: 147 SKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 191
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 124 bits (314), Expect = 7e-38
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
YP PPK++ ++HPNI +G V ++IL E W PV ++
Sbjct: 76 SFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILR-------------EDWKPVLTI 122
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
I+ + + EPN E N +AA++ + +R F + + +R
Sbjct: 123 NSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 167
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 120 bits (302), Expect = 6e-36
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ F YP+ PPK+ ++FHPNI G VC++IL E WSP +
Sbjct: 85 NLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNIL-------------REDWSPALDL 131
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ I+ ++ + EPN N DAAK+ E +EF + +
Sbjct: 132 QSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSG 176
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 119 bits (301), Expect = 2e-35
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 14/106 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYAD-GRVCISILHAPGDDPMGYESSSERWSPVQS 66
+T P+DYP +PPK++F +++HPNI + G +C+ +L WSP +
Sbjct: 75 AITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLK-------------NEWSPALT 121
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ LLS+ ++L++P + + + AKM++E+ F K A+ +
Sbjct: 122 IRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKT 167
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 118 bits (298), Expect = 5e-35
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ P +YP PPKMQF +++HPNI G +C+ IL WSPV +
Sbjct: 55 DIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR-------------NAWSPVIT 101
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ L+S+ ++L P + + A+ + DRE FNK A R
Sbjct: 102 LKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 147
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 115 bits (289), Expect = 3e-34
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 13/94 (13%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ +YP SPP ++F ++ + GRV + LH + W+
Sbjct: 75 SLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHI-----------LKNWNRNY 123
Query: 66 SVEKILLSVV-SMLAEPNDESGANVDAAKMWRED 98
++E IL+S+ ML+ N + +++ +
Sbjct: 124 TIETILISLRQEMLSSANKRLPQPNE-GEVYSNN 156
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 114 bits (287), Expect = 6e-34
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
++ P YP +PPK++F +++HPNI G +C+ IL ++W+ +
Sbjct: 63 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-------------DQWAAAMT 109
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ +LLS+ ++LA + + A ++++ E F + A
Sbjct: 110 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 155
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 114 bits (287), Expect = 2e-33
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYAD-GRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ P DYP +PPKM+F +++HPNI + G +C+ IL WSP +
Sbjct: 97 DIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILK-------------HEWSPALT 143
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ LLS+ +MLA+P + + AKM E+ F + A
Sbjct: 144 IRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET 189
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 115 bits (289), Expect = 4e-32
Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 13/99 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ FP+DYP PPK+ FT ++HPNI ++G + + IL +WSP ++
Sbjct: 55 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR-------------SQWSPALTI 101
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRA 106
K+LLS+ S+L +PN + + A++++ DRE++N+ A
Sbjct: 102 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIA 140
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 108 bits (272), Expect = 4e-32
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 14/80 (17%)
Query: 7 AKVTFPSDYPLSPPKMQF-TCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
K+ FP DYPL PP + F H ++Y++G +C+S+L + ++P
Sbjct: 57 LKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLG-------------DDYNPSL 103
Query: 66 SVEKILLSVVSMLAEPNDES 85
S+ ++LS++SML+ ++
Sbjct: 104 SISGLVLSIISMLSSAKEKK 123
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 106 bits (267), Expect = 3e-31
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 14/79 (17%)
Query: 7 AKVTFPSDYPLSPPKMQF-TCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
K+ FP +YPL PP + F H ++Y++G +C+S+L + ++P
Sbjct: 71 IKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLG-------------DDYNPSL 117
Query: 66 SVEKILLSVVSMLAEPNDE 84
S+ ++LS++SML+ ++
Sbjct: 118 SISGLILSIISMLSSAKEK 136
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 108 bits (272), Expect = 3e-31
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
++ P YP +PPK++F +++HPNI G +C+ IL ++W+ +
Sbjct: 60 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-------------DQWAAAMT 106
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ +LLS+ ++LA + + A ++++ E F + A
Sbjct: 107 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 152
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 104 bits (261), Expect = 7e-30
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPN-IYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+F ++P PP ++ + + G +C+ +L G WS
Sbjct: 93 LNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQG------------WSSAY 140
Query: 66 SVEKILLSVVSMLAEPN--DESGANVDAAKMWREDREEFNKRA 106
S+E +++ + + L + + GAN + + R ++ +N
Sbjct: 141 SIESVIMQINATLVKGKARVQFGANKNQYNLAR-AQQSYNSIV 182
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 103 bits (259), Expect = 8e-30
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
VT P DYP + P + F ++ HPN+ A G VC+ ++ ++ W+P+ S
Sbjct: 51 HVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVI-------------NQTWTPLYS 97
Query: 67 VEKIL-LSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ + + + +L PN N DAA + +D+ + ++ + V+
Sbjct: 98 LVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKL 144
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 104 bits (261), Expect = 9e-30
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 15/107 (14%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+V P YP P + F ++FHPNI A G VC+ ++ ++ W+ +
Sbjct: 73 RVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVI-------------NQTWTALYD 119
Query: 67 VEKILLSVV-SMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ I S + +LA PN N DAA M+ EE+ ++ + ++K
Sbjct: 120 LTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQK 166
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 106 bits (265), Expect = 1e-29
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 14/106 (13%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
++ P YP +PPK++F +++HPNI G +C+ IL ++W+ +
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILK-------------DQWAAAMT 158
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ +LLS+ ++LA + + A ++++ E F + A
Sbjct: 159 LRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 204
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 100 bits (252), Expect = 1e-28
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRV----CISILHAPGDDPMGYESSSERWSP 63
K+ YP +PP ++F ++ + + V IS+L +W
Sbjct: 81 KIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA--------------KWQN 126
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWR 96
S++ +L + ++ + + +
Sbjct: 127 SYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS 159
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 99.7 bits (249), Expect = 2e-28
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYAD-GRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ +YP SPPK+ F ++ P + G V + W +
Sbjct: 62 SIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFH------------TLRDWKRAYT 109
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKM 94
+E +LL + +A P ++ +
Sbjct: 110 METLLLDLRKEMATPANKKLRQPKEGET 137
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 100 bits (250), Expect = 3e-28
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 15/107 (14%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
V PSDYP P + F + HPN+ G VC+ ++ ++ W+P+
Sbjct: 60 HVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVI-------------NQTWTPMYQ 106
Query: 67 VEKIL-LSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+E I + + +L PN NV AA + DR F+ + V
Sbjct: 107 LENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVST 153
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 103 bits (258), Expect = 4e-28
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 7 AKVTFPSDYPLSPPKMQFT-----CEMFHPNIYADGRVCISILHAPGDDPMGYESSSERW 61
V FP DYP SPP + F+PN+Y DG+VC+SIL+ P E+W
Sbjct: 131 FDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRP------EEKW 184
Query: 62 SP-VQSVEKILLSVVSMLAEPN---DESG-ANVDAAKMWREDREEFNKRANKLVRKT 113
+P S ++L+SV S++ +E G + E++ + K
Sbjct: 185 NPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKW 241
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 99.8 bits (249), Expect = 4e-28
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRV----CISILHAPGDDPMGYESSSERWSP 63
K+ YP +PP ++F ++ + + V IS+L +W
Sbjct: 91 KIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA--------------KWQN 136
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWR 96
S++ +L + ++ + + +
Sbjct: 137 SYSIKVVLQELRRLMMSKENMKLPQPPEGQCYS 169
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 97.4 bits (243), Expect = 1e-27
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEM--FHPNIYADGRVCISILHAPGDDPMGYESSSERWSPV 64
F S YP P++ FT E HP++Y++G +C+SIL +E WSP
Sbjct: 75 LLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL-------------TEDWSPA 121
Query: 65 QSVEKILLSVVSMLA 79
SV+ + LS++SML+
Sbjct: 122 LSVQSVCLSIISMLS 136
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 98.7 bits (246), Expect = 1e-27
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
K+ FP ++P PP + + + R+C+SI + W+P S
Sbjct: 65 GKLIFPREFPFKPPSIYMI--TPNGRFKCNTRLCLSITDFHP----------DTWNPAWS 112
Query: 67 VEKILLSVVSMLAEPNDESG--ANVDAAKMWR-EDREEFNKRA 106
V IL ++S + E G D K FN +
Sbjct: 113 VSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKD 155
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 35.3 bits (81), Expect = 0.001
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 6 PAKVTFPSDYPLSPPKMQF--TCEMF---HPNIYADGRVCISILH 45
P + YP +PP T M ++ A+G++ + LH
Sbjct: 72 PICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLH 116
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor
and arginine permease...; endosomal sorting, ESCRT-I;
1.45A {Saccharomyces cerevisiae} PDB: 3r42_A 1uzx_A*
Length = 162
Score = 32.3 bits (73), Expect = 0.017
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 6 PAKVTFPSDYPLSPP--------KMQFTCEMF---HPNIYADGRVCISILH 45
P + PS YP+ PP T I ++G + + ILH
Sbjct: 84 PVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH 134
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.32
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 17/69 (24%)
Query: 50 DPMGYESSSER-WSPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWRE----DREEFNK 104
D + E S R W Q L E D + + WRE D EE+N+
Sbjct: 78 DRLTQEPESIRKWREEQRKR---------LQE-LDAASK--VMEQEWREKAKKDLEEWNQ 125
Query: 105 RANKLVRKT 113
R ++ V K
Sbjct: 126 RQSEQVEKN 134
Score = 27.8 bits (61), Expect = 0.74
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 75 VSMLAEPNDESGANVDAAKMWREDREE 101
++ E ++ + WRE++ +
Sbjct: 74 IAQADRLTQEP----ESIRKWREEQRK 96
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold,
structural genomics, protein structure initiative, PSI;
NMR {Escherichia coli} SCOP: d.58.54.1
Length = 109
Score = 26.7 bits (59), Expect = 1.1
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 1 MDTITPAKVTFPSDYPLSPPK-MQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSS 58
M T + FP+ + K M + + HAPGD + SS
Sbjct: 23 MKTKLNELLEFPTPFTY---KVMGQALPELVDQVVE-----VVQRHAPGDYTPTVKPSS 73
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 358
Score = 27.3 bits (60), Expect = 1.1
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 13 SDYPLSPPKMQFTCEMFHPNIYADGR-------VCISILHAPG 48
+ PLS + +F DGR + IS G
Sbjct: 19 KETPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYG 61
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 305
Score = 27.4 bits (60), Expect = 1.3
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 7/44 (15%)
Query: 12 PSDYPLSPPKMQFTCEMFHPNIYADGR-------VCISILHAPG 48
D +S + +F E N DGR V I+ G
Sbjct: 2 AKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFG 45
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 27.0 bits (60), Expect = 1.6
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 83 DESGANVDAA---KMW--REDREEFNKRANKLV 110
D+ GA D W +DR EF R L+
Sbjct: 536 DDQGAKYDGDGNLVDWWTDDDRTEFAARTKALI 568
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.3
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 18/73 (24%)
Query: 59 ERWSPVQS--VEKILLSVVSMLAEPND-----------ESGANVDAAKM---WRE-DREE 101
+ W V + I+ S +++L EP + A++ + W + + +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 102 FNKRANKLVRKTL 114
NKL + +L
Sbjct: 404 VMVVVNKLHKYSL 416
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 128
Score = 25.2 bits (55), Expect = 5.1
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 8 KVTFPSDYPLSPPKMQFTCE 27
P +YP P + E
Sbjct: 61 VFHLPVNYPSCLPGISINSE 80
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG,
protein structure initiative, midwest center for STRU
genomics; 2.10A {Methanosarcina mazei}
Length = 173
Score = 25.0 bits (55), Expect = 5.6
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 92 AKMWREDREEFNKRANKLVR 111
++W + EE A K+
Sbjct: 143 KEIWEQQHEEVLDSAEKITS 162
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A
{Phaeospirillum molischianum} SCOP: a.24.3.2
Length = 128
Score = 24.7 bits (53), Expect = 6.3
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 79 AEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
A+ + + + EF + L ++ L
Sbjct: 59 AKGTEALPNGETKPEAFGSKSAEFLEGWKALATESTKL 96
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 24.9 bits (55), Expect = 7.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 3 TITPAKVTFPSDYPLSPPKMQFT 25
T++ AK T PS YPL+P
Sbjct: 335 TVSAAKTTPPSVYPLAPGSAAAA 357
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 24.8 bits (55), Expect = 8.2
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 12/40 (30%)
Query: 78 LAEPNDESGANV--------DAAKMWREDREEFNKRANKL 109
LA + +G V D A EDRE F +L
Sbjct: 650 LARALEAAGVPVIGTSPDAIDRA----EDRERFQHAVERL 685
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 25.1 bits (55), Expect = 8.4
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 83 DESGANVDAA---KMW--REDREEFNKRANKLV 110
D++G N + W ++ F +++ +V
Sbjct: 537 DDNGRNFNKDGDLVDWWTQQSASNFKEQSQCMV 569
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 25.0 bits (55), Expect = 8.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 97 EDREEFNKRANKLVRKTLGLD 117
ED + R ++++ LG+D
Sbjct: 389 EDPQTHANRIYRMIKLGLGID 409
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 24.6 bits (54), Expect = 9.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 97 EDREEFNKRANKLVRKTLGLD 117
ED + +R N++++ L LD
Sbjct: 405 EDPTGYAERINRMIKLGLSLD 425
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.398
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,769,646
Number of extensions: 89489
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 76
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)