RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10005
(117 letters)
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 119 bits (299), Expect = 3e-36
Identities = 71/113 (62%), Positives = 88/113 (77%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSP 63
+ AK+ FP DYPLSPPK+ FT + HPNIY +G VCISILH+PGDDP YE + ERWSP
Sbjct: 52 VFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSP 111
Query: 64 VQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKTLGL 116
VQSVEKILLSV+SML+EPN ESGAN+DA +WR++R EF ++ + K+LG
Sbjct: 112 VQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLGF 164
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 114 bits (287), Expect = 1e-34
Identities = 65/106 (61%), Positives = 77/106 (72%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A + FP DYP PPKM+F E++HPNI +G VCISILH PGDD GYE ERW PV +
Sbjct: 52 AILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHT 111
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
VE ILLSV+SML +PN ES ANVDAAKM RE+ EF K+ + VR+
Sbjct: 112 VETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRR 157
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 88.6 bits (219), Expect = 1e-24
Identities = 45/75 (60%), Positives = 58/75 (77%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
A +TFP DYPL PPKM+F E++HPN+ +G VCISILH PG+D GYE ERW P+ +
Sbjct: 51 AHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHT 110
Query: 67 VEKILLSVVSMLAEP 81
VE I++SV+SMLA+P
Sbjct: 111 VETIMISVISMLADP 125
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 86.3 bits (213), Expect = 2e-23
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 13/107 (12%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ F +YP PP ++F EMFHPN+YA+G +C+ IL RW+P
Sbjct: 54 LLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ-------------NRWTPTYD 100
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
V IL S+ S+ +PN S ANV+AA ++++ + ++ KR + V K+
Sbjct: 101 VASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKS 147
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 83.3 bits (205), Expect = 3e-22
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ FP+DYP PPK+ FT ++HPNI ++G +C+ IL +WSP ++
Sbjct: 53 TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR-------------SQWSPALTI 99
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
K+LLS+ S+L +PN + + A++++ DRE +N+ A + +K
Sbjct: 100 SKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQK 144
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 79.0 bits (194), Expect = 1e-20
Identities = 29/106 (27%), Positives = 58/106 (54%), Gaps = 12/106 (11%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
++ FP++YP PPK+ F +++HPNI G+VC+ ++ A W P
Sbjct: 50 IEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN------------WKPATK 97
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++++ S+++++ +P E D A+ + +DR++F K A + +K
Sbjct: 98 TDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKK 143
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 78.7 bits (193), Expect = 2e-20
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+TF DYP PPK+ F ++H NI + G +C+ IL + WSP +
Sbjct: 53 LDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILK-------------DNWSPALT 99
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ K+LLS+ S+L + N A + +R E ++ A + ++
Sbjct: 100 ISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 145
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 78.3 bits (192), Expect = 2e-20
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ F +YP PP ++F +MFHPN+YADG +C+ IL RWSP
Sbjct: 54 LSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-------------NRWSPTYD 100
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRKT 113
V IL S+ S+L EPN S AN AA++++E+R E+ KR ++V ++
Sbjct: 101 VAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS 147
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 77.9 bits (191), Expect = 4e-20
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
++ P DYP+ PK++F +++HPNI GR+C+ +L WSP
Sbjct: 53 ELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLK-------------TNWSPAL 99
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ +LLS+ ++LA PN D A+ W ++ + +A + +
Sbjct: 100 QIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKL 146
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 77.9 bits (191), Expect = 4e-20
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+++FP +YP PP ++FT +++HPN+ +G++C+ I+ + W P
Sbjct: 51 LRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN------------WKPCTK 98
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++L ++ ++ PN +D A + ++ E F K A + +
Sbjct: 99 TCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLR 144
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 77.1 bits (189), Expect = 7e-20
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
++ P +YP++ PK++F +++HPN+ GR+C+ IL ++WSP
Sbjct: 53 LELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK-------------DKWSPALQ 99
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+ +LLS+ ++L+ PN + D A+ W+ + + + A R
Sbjct: 100 IRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRL 145
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 76.7 bits (188), Expect = 9e-20
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
++ F DYP SPPK +F +FHPN+Y G V +SIL D W P +
Sbjct: 58 LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKD-----------WRPAIT 106
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+++ILL + +L EPN + A +A ++ ++R E+ KR +K
Sbjct: 107 IKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKK 152
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 73.2 bits (179), Expect = 3e-18
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
YP PPK++ ++HPNI +G VC++IL E W PV ++
Sbjct: 53 SFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTI 99
Query: 68 EKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
I+ + + EPN E N +AA++ + +R F + + +R
Sbjct: 100 NSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 144
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 72.5 bits (177), Expect = 5e-18
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 14/106 (13%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ FPSDYP PP ++FT +HPN+ G +C+ IL E W+
Sbjct: 60 LTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILK-------------ENWTASYD 106
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
V ILLS+ S+L EPN+ S N AA MW ++ E+ K ++ +
Sbjct: 107 VRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKT 151
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 72.1 bits (176), Expect = 6e-18
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 2 DTITPAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERW 61
D + FPS YP + P ++F +HPN+ G + + IL E+W
Sbjct: 47 DLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILK-------------EKW 93
Query: 62 SPVQSVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
S + V ILLS+ S+L EPN +S N AA++W+ + F K + K
Sbjct: 94 SALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSK 143
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 72.1 bits (176), Expect = 7e-18
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 13/104 (12%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ D+P SPPK F ++FHPN+ A+G +C+++L W+ +
Sbjct: 59 LLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLK-------------RDWTAELGIR 105
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
+LL++ +L PN ES N +A ++ E+ EE+ RA L
Sbjct: 106 HVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI 149
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 71.7 bits (175), Expect = 9e-18
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ P +YP PPKMQF +++HPNI + + WSPV +++
Sbjct: 55 IEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKN------------AWSPVITLK 102
Query: 69 KILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
L+S+ ++L P + + A+ + DRE FNK A R
Sbjct: 103 SALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL 146
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 70.9 bits (173), Expect = 2e-17
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ F S+Y +PP ++F FHPN+ + + + E+W+ +
Sbjct: 55 LTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPC----------IDFLDNPEKWNTNYT 104
Query: 67 VEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRA 106
+ ILL++ ML+ P E+ N++AA++ +D +
Sbjct: 105 LSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTIL 144
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 70.3 bits (171), Expect = 4e-17
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+V P YP PP+++F ++HPNI + GR+C+ +L P W P
Sbjct: 52 KLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA---------WRPSL 102
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ +L S+ +++EPN + D + ++ ++ F K A + K
Sbjct: 103 NIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEK 149
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 70.1 bits (171), Expect = 4e-17
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+V P YP P + F ++FHPNI + W+ + +
Sbjct: 51 RVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQ------------TWTALYDL 98
Query: 68 EKILLSVVS-MLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
I S + +LA PN N DAA M+ EE+ ++ + ++K
Sbjct: 99 TNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQK 144
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa,
E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 69.9 bits (170), Expect = 5e-17
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIY-ADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
++ P YP +PPK++F +++HPNI G +C+ I ++W+
Sbjct: 58 LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDI-------------LKDQWAAAM 104
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ +LLS+ ++LA + + A ++++ E F + A
Sbjct: 105 TLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHV 151
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 68.3 bits (166), Expect = 2e-16
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Query: 7 AKVTFPSDYPLSPPKMQF-TCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQ 65
+ P DYP +PPKM+F T G +C+ I WSP
Sbjct: 65 LDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDI-------------LKHEWSPAL 111
Query: 66 SVEKILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
++ LLS+ +MLA+P + + AKM E+ F + A
Sbjct: 112 TIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLWTET 158
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 67.8 bits (165), Expect = 4e-16
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 13/106 (12%)
Query: 8 KVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
V PSDYP P + F + HPN+ + + ++ W+P+ +
Sbjct: 48 HVQLPSDYPFKSPSIGFCNRILHPNVD------------ERSGSVCLDVINQTWTPMYQL 95
Query: 68 EK-ILLSVVSMLAEPNDESGANVDAAKMWREDREEFNKRANKLVRK 112
E + + +L PN NV AA + DR F+ + V
Sbjct: 96 ENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVST 141
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 61.0 bits (147), Expect = 1e-13
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 8 KVTFPSDYPLSPPKMQF-TCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+F ++P PP ++ + + G +C+ +L + WS S
Sbjct: 71 NFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLT------------KQGWSSAYS 118
Query: 67 VEKILLSVVSMLAEPN--DESGANVDAAKMWREDREEFNKRA 106
+E +++ + + L + + GAN + + R ++ +N
Sbjct: 119 IESVIMQINATLVKGKARVQFGANKNQYNLAR-AQQSYNSIV 159
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 60.4 bits (146), Expect = 1e-13
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQS 66
+ +YP SPPK+ F ++ P + + H W +
Sbjct: 59 LSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTL-----------RDWKRAYT 107
Query: 67 VEKILLSVVSMLAEPNDESGAN 88
+E +LL + +A P ++
Sbjct: 108 METLLLDLRKEMATPANKKLRQ 129
>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 152
Score = 60.4 bits (146), Expect = 2e-13
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 24/87 (27%)
Query: 8 KVTFPSDYPLSPPKMQFTCEM-----------FHPNIYADGRVCISILHAPGDDPMGYES 56
+ PS YP+ PP + E I ++G + + ILH
Sbjct: 77 IMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIALPILH----------- 125
Query: 57 SSERWSPVQSVEKILLSVVSMLAEPND 83
++ ++ ++S+L EP
Sbjct: 126 --CWDPAAMNLIMVVQELMSLLHEPPQ 150
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 60.4 bits (146), Expect = 2e-13
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 4 ITPAKVTFPSDYPLSPPKMQFTCEMFHPNI-YADGRVCISILHAPGDDPMGYESSSERWS 62
I K+ YP +PP ++F ++ + ++G V + +W
Sbjct: 57 IYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLA-----------KWQ 105
Query: 63 PVQSVEKILLSVVSMLAEPN 82
S++ +L + ++
Sbjct: 106 NSYSIKVVLQELRRLMMSKE 125
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 59.3 bits (143), Expect = 2e-13
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 15/75 (20%)
Query: 7 AKVTFPSDYPLSPPKMQFTCEMF--HPNIYADGRVCISILHAPGDDPMGYESSSERWSPV 64
F S YP P++ FT E HP++Y++G +C+SIL +E WSP
Sbjct: 56 LLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL-------------TEDWSPA 102
Query: 65 QSVEKILLSVVSMLA 79
SV+ + LS++SML+
Sbjct: 103 LSVQSVCLSIISMLS 117
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 59.8 bits (144), Expect = 3e-13
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 15/107 (14%)
Query: 9 VTFPSDYPLSPPKMQFTCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSVE 68
+ FP ++P PP + + R+C+SI + W+P SV
Sbjct: 54 LIFPREFPFKPPSIYMITPNGRFKC--NTRLCLSITDFHP----------DTWNPAWSVS 101
Query: 69 KILLSVVSMLAEPNDESGA---NVDAAKMWREDREEFNKRANKLVRK 112
IL ++S + E G+ + + FN +
Sbjct: 102 TILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCEL 148
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 56.5 bits (136), Expect = 5e-12
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 18/82 (21%)
Query: 6 PAKVTFPSDYPLSPPKMQFTCEM-----FHPNIYADGRVCISILHAPGDDPMGYESSSER 60
P + YP +PP ++ A+G++ + LH E
Sbjct: 69 PICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLH-------------EW 115
Query: 61 WSPVQSVEKILLSVVSMLAEPN 82
P + ++ ++ + +
Sbjct: 116 KHPQSDLLGLIQVMIVVFGDEP 137
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 54.3 bits (130), Expect = 2e-11
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 14/72 (19%)
Query: 9 VTFPSDYPLSPPKMQF-TCEMFHPNIYADGRVCISILHAPGDDPMGYESSSERWSPVQSV 67
+ FP DYPL PP + F H ++Y++G +C+S+L + ++P S+
Sbjct: 51 IIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLL-------------GDDYNPSLSI 97
Query: 68 EKILLSVVSMLA 79
++LS++SML+
Sbjct: 98 SGLVLSIISMLS 109
>d2bo9b1 d.17.1.5 (B:1-98) Latexin {Human (Homo sapiens) [TaxId:
9606]}
Length = 98
Score = 24.0 bits (52), Expect = 3.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 7 AKVTFPSDYPLSPPKMQFTCE 27
A+V +PS + P++ FT E
Sbjct: 72 AEVLYPSTGQETAPEVNFTFE 92
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45
{Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 23.6 bits (50), Expect = 7.6
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 13 SDYPLSPPKMQFTCEMFHPNIYADGR 38
+ PLS + +F DGR
Sbjct: 2 KETPLSNCERRFLLRAIEEKKRLDGR 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.398
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 437,551
Number of extensions: 17875
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 36
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)