BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10006
(67 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OOZ|B Chain B, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|A Chain A, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|1OPE|B Chain B, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 475
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+V+ Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242
>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|B Chain B, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|C Chain C, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1O9L|D Chain D, Succinate:coenzyme-A Transferase (Pig Heart)
pdb|1OOY|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|1OOY|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
pdb|3K6M|A Chain A, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|D Chain D, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|C Chain C, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart.
pdb|3K6M|B Chain B, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
Transferase From Pig Heart
Length = 481
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+V+ Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242
>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|E Chain E, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|F Chain F, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|G Chain G, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
pdb|3OXO|H Chain H, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
Covalently Bound To Coa
Length = 488
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+V+ Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242
>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|B Chain B, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|C Chain C, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRC|D Chain D, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+V+ Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242
>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|B Chain B, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|C Chain C, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
pdb|2NRB|D Chain D, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
From Pig Heart
Length = 481
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+V+ Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242
>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|B Chain B, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|C Chain C, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
pdb|3DLX|D Chain D, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
Length = 489
Score = 69.3 bits (168), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+++ Y+KRIER
Sbjct: 196 MCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIER 243
>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
pdb|1M3E|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
(Selenomethionine)
Length = 481
Score = 68.2 bits (165), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/47 (59%), Positives = 39/47 (82%)
Query: 2 CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
CKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+V+ Y+KRIER
Sbjct: 196 CKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242
>pdb|3RRL|A Chain A, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit
A And B From Helicobacter Pylori 26695
pdb|3RRL|C Chain C, Complex Structure Of 3-Oxoadipate Coa-Transferase Subunit
A And B From Helicobacter Pylori 26695
Length = 235
Score = 57.4 bits (137), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
AAK + EVEE+V G+LDPD IH+PGI+V I + ++KRIE+
Sbjct: 184 AAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEK 228
>pdb|3CDK|A Chain A, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
pdb|3CDK|C Chain C, Crystal Structure Of The Co-Expressed Succinyl-Coa
Transferase A And B Complex From Bacillus Subtilis
Length = 241
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
A K TI E EE+V G+LDPD IH PGI+V +V ++ +KRIE+
Sbjct: 184 AGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEK 228
>pdb|1K6D|A Chain A, Crystal Structure Of Acetate Coa-Transferase Alpha Subunit
pdb|1K6D|B Chain B, Crystal Structure Of Acetate Coa-Transferase Alpha Subunit
Length = 220
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
AA T+VE +ELV G+L PD I PG ++ I+
Sbjct: 181 AADITLVEPDELVETGELQPDHIVTPGAVIDHII 214
>pdb|1POI|A Chain A, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
pdb|1POI|C Chain C, Crystal Structure Of Glutaconate Coenzyme A-transferase
From Acidaminococcus Fermentans To 2.55 Angstoms
Resolution
Length = 317
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 1 MCKAAKTTIVEVEELVNIGDL--DPDSIHVPGIFVNRIV 37
+ +AAK TIV EE+++ ++ DP +PG+ V+ +V
Sbjct: 200 IAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVV 238
>pdb|4FNV|A Chain A, Crystal Structure Of Heparinase Iii
Length = 702
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 32 FVNRIVQCSNYDKRIERSVDGWCNRREN 59
F N+ V CS + RI VDG N R++
Sbjct: 613 FANKAVTCSPFTGRIAYLVDGAYNTRQS 640
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,942,685
Number of Sequences: 62578
Number of extensions: 59940
Number of successful extensions: 105
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 12
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)