BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10006
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29551|SCOT1_PIG Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Sus scrofa GN=OXCT1 PE=1 SV=2
Length = 520
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/48 (60%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+V+ Y+KRIER
Sbjct: 234 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 281
>sp|P55809|SCOT1_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Homo sapiens GN=OXCT1 PE=1 SV=1
Length = 520
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 40/48 (83%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA+TT+VEVEE+V+IG P+ IH+P I+V+R+++ Y+KRIER
Sbjct: 234 MCKAAETTVVEVEEIVDIGAFAPEDIHIPQIYVHRLIKGEKYEKRIER 281
>sp|B2GV06|SCOT1_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Rattus norvegicus GN=Oxct1 PE=1 SV=1
Length = 520
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA TT+VEVEE+V+IG P+ IH+P I+V+R+++ Y+KRIER
Sbjct: 234 MCKAAGTTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIER 281
>sp|Q9D0K2|SCOT1_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Mus musculus GN=Oxct1 PE=1 SV=1
Length = 520
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA TT+VEVEE+V+IG P+ IH+P I+V+R+++ Y+KRIER
Sbjct: 234 MCKAAGTTVVEVEEIVDIGSFAPEDIHIPKIYVHRLIKGEKYEKRIER 281
>sp|Q54JD9|SCOT_DICDI Probable succinyl-CoA:3-ketoacid coenzyme A transferase,
mitochondrial OS=Dictyostelium discoideum GN=oxct1 PE=3
SV=1
Length = 509
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 38/48 (79%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
M AAK TI EVEE+V+ G++ PD +HVPGI++ RIV+ +++KRIER
Sbjct: 223 MATAAKITIAEVEEIVDAGEIKPDEVHVPGIYIQRIVKGPSFEKRIER 270
>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid coenzyme A transferase,
mitochondrial OS=Caenorhabditis elegans GN=C05C10.3 PE=3
SV=1
Length = 521
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKA+K TIVEVEE+V G + P+ +H+P I+ +R+V NY K IER
Sbjct: 233 MCKASKCTIVEVEEIVEPGVIAPNDVHIPSIYCHRLVLGKNYKKPIER 280
>sp|Q9ZLE3|SCOA_HELPJ Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
OS=Helicobacter pylori (strain J99) GN=scoA PE=3 SV=1
Length = 232
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERS 49
AAK + EVEE+V G+LDPD IH+PGI+V I + ++KRIE++
Sbjct: 181 AAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEKT 226
>sp|P56006|SCOA_HELPY Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
OS=Helicobacter pylori (strain ATCC 700392 / 26695)
GN=scoA PE=1 SV=1
Length = 232
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
AAK + EVEE+V G+LDPD IH+PGI+V I + ++KRIE+
Sbjct: 181 AAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEK 225
>sp|P42315|SCOA_BACSU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
OS=Bacillus subtilis (strain 168) GN=scoA PE=1 SV=1
Length = 238
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
A K TI E EE+V G+LDPD IH PGI+V +V ++ +KRIE+
Sbjct: 181 AGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEK 225
>sp|P63648|SCOA_MYCTU Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
OS=Mycobacterium tuberculosis GN=scoA PE=3 SV=1
Length = 248
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
A + TI EVE LV G++DP ++H PG+FV+R+V N K+IER
Sbjct: 199 AGRITIAEVEHLVEPGEIDPATVHTPGVFVHRVVHVPNPAKKIER 243
>sp|P63649|SCOA_MYCBO Probable succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=scoA PE=3 SV=1
Length = 248
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
A + TI EVE LV G++DP ++H PG+FV+R+V N K+IER
Sbjct: 199 AGRITIAEVEHLVEPGEIDPATVHTPGVFVHRVVHVPNPAKKIER 243
>sp|B0RVK4|SCOA_XANCB Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
OS=Xanthomonas campestris pv. campestris (strain B100)
GN=lpsI PE=3 SV=1
Length = 242
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
A + I EVEE+V +G +DPD +H+PGI+V+R+V + +KRIE+
Sbjct: 190 AGRICIAEVEEIVELGAIDPDQVHLPGIYVDRLVLNATPEKRIEQ 234
>sp|P0C7I7|SCOA_XANCP Succinyl-CoA:3-ketoacid coenzyme A transferase subunit A
OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=lpsI PE=3 SV=1
Length = 242
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 34/45 (75%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
A + I EVEE+V +G +DPD +H+PGI+++R+V + +KRIE+
Sbjct: 190 AGRVCIAEVEEIVELGAIDPDQVHLPGIYIDRLVLNATPEKRIEQ 234
>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial
OS=Homo sapiens GN=OXCT2 PE=2 SV=2
Length = 517
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
MCKAA T VEVEE+V +G P+ IHVP I+V+R+++ Y+KRIER
Sbjct: 234 MCKAADVTAVEVEEIVEVGAFPPEDIHVPNIYVDRVIKGQKYEKRIER 281
>sp|Q9JJN4|SCO2A_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial
OS=Mus musculus GN=Oxct2a PE=2 SV=2
Length = 520
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER-----SVDGWCN 55
MCKAA ++VEVEE+V++G P+ IHVP I+V+R+++ ++KRIER S +
Sbjct: 234 MCKAADISVVEVEEIVDVGTFAPEDIHVPNIYVDRVIKGPKFEKRIERLTTRDSKPAPGS 293
Query: 56 RRENPNRNR 64
+ +P+R R
Sbjct: 294 KDNDPSRTR 302
>sp|Q9ESL0|SCO2B_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial
OS=Mus musculus GN=Oxct2b PE=2 SV=1
Length = 520
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 5/69 (7%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER-----SVDGWCN 55
MCKAA ++VEVEE+V++G P+ IH+P I+V+R+++ ++KRIER S +
Sbjct: 234 MCKAADISVVEVEEIVDVGTFAPEDIHIPNIYVDRVIKGPKFEKRIERLTTRDSKPAPGS 293
Query: 56 RRENPNRNR 64
+ +P+R R
Sbjct: 294 KDNDPSRTR 302
>sp|Q5XIJ9|SCO2A_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial
OS=Rattus norvegicus GN=Oxct2a PE=1 SV=1
Length = 520
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 5/69 (7%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER-----SVDGWCN 55
MCKAA ++VEVEE+V++G P+ IH+P I+V R+++ ++KRIER S +
Sbjct: 234 MCKAADISVVEVEEIVDVGTFAPEDIHIPNIYVKRVIKGPRFEKRIERLTTRDSPPAPGS 293
Query: 56 RRENPNRNR 64
+ ++P R R
Sbjct: 294 KDQDPKRTR 302
>sp|Q01103|PCAI_PSEPU 3-oxoadipate CoA-transferase subunit A OS=Pseudomonas putida
GN=pcaI PE=1 SV=2
Length = 231
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNR 35
M AAKT I +V+++V +G+LDP+ I PGIFV R
Sbjct: 181 MAMAAKTAIAQVDQVVELGELDPEHIITPGIFVQR 215
>sp|Q43973|PCAI_ACIAD 3-oxoadipate CoA-transferase subunit A OS=Acinetobacter sp. (strain
ADP1) GN=pcaI PE=1 SV=1
Length = 228
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
M AA TI +V E+V +G+LDP+++ PGIFV +V
Sbjct: 181 MAMAANVTIAQVSEVVALGELDPENVVTPGIFVQHVV 217
>sp|P76458|ATOD_ECOLI Acetate CoA-transferase subunit alpha OS=Escherichia coli (strain
K12) GN=atoD PE=1 SV=1
Length = 220
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
AA T+VE +ELV G+L PD I PG ++ I+
Sbjct: 181 AADITLVEPDELVETGELQPDHIVTPGAVIDHII 214
>sp|P33752|CTFA_CLOAB Butyrate--acetoacetate CoA-transferase subunit A OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ctfA PE=1 SV=1
Length = 218
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQ 38
M AAKT IVE E LV+ L+ + PG+ +N IV+
Sbjct: 178 MAMAAKTVIVEAENLVSCEKLEKEKAMTPGVLINYIVK 215
>sp|P44875|ATOD_HAEIN Acetate CoA-transferase subunit alpha OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=atoD PE=3
SV=1
Length = 217
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS 40
AAKT I +V+ L+ +G L PD + P ++ IV CS
Sbjct: 181 AAKTVIAQVDNLLEVGQLPPDEVITPAALIDYIV-CS 216
>sp|O34317|YODS_BACSU Probable coenzyme A transferase subunit alpha OS=Bacillus subtilis
(strain 168) GN=yodS PE=3 SV=1
Length = 229
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQ 38
M AA+ T E E +V +G++ + I PG+FV +V+
Sbjct: 181 MAMAARRTFAEAERIVPMGEISEEMIVTPGVFVEGVVR 218
>sp|F4JN05|BIG4_ARATH Brefeldin A-inhibited guanine nucleotide-exchange protein 4
OS=Arabidopsis thaliana GN=BIG4 PE=2 SV=1
Length = 1706
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 9 IVEVEEL----VNIGDLDPDSIHVPGIFVNR 35
I +VE L VNIGDLD DS+H+ V+R
Sbjct: 1464 IEDVETLSGQSVNIGDLDDDSLHIMSYVVSR 1494
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,430,991
Number of Sequences: 539616
Number of extensions: 751443
Number of successful extensions: 1418
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1394
Number of HSP's gapped (non-prelim): 24
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)