Query psy10006
Match_columns 67
No_of_seqs 103 out of 1043
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 15:28:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1788 AtoD Acyl CoA:acetate/ 99.6 2.6E-15 5.5E-20 107.7 3.5 40 1-40 178-217 (220)
2 PRK09920 acetyl-CoA:acetoacety 99.5 9.9E-15 2.2E-19 103.4 4.2 40 1-40 178-217 (219)
3 TIGR02429 pcaI_scoA_fam 3-oxoa 99.5 1.7E-14 3.7E-19 102.2 3.9 40 1-40 181-220 (222)
4 KOG3822|consensus 99.4 1.3E-13 2.8E-18 106.3 3.9 54 1-54 231-284 (516)
5 COG4670 Acyl CoA:acetate/3-ket 99.3 1.6E-12 3.5E-17 102.0 1.5 51 1-53 200-254 (527)
6 PF01144 CoA_trans: Coenzyme A 98.4 1.2E-07 2.7E-12 64.8 1.2 38 2-39 180-217 (217)
7 TIGR01110 mdcA malonate decarb 97.7 2.1E-05 4.5E-10 62.8 2.5 37 1-41 166-206 (543)
8 TIGR01584 citF citrate lyase, 93.4 0.064 1.4E-06 42.8 2.5 36 2-41 176-212 (492)
9 TIGR03458 YgfH_subfam succinat 90.7 0.2 4.3E-06 39.5 2.4 40 1-40 145-210 (485)
10 PF04223 CitF: Citrate lyase, 80.8 1.4 2.9E-05 35.3 2.4 36 2-40 153-188 (466)
11 PF10295 DUF2406: Uncharacteri 57.6 5.7 0.00012 24.2 1.0 13 53-65 41-53 (69)
12 PTZ00155 40S ribosomal protein 23.9 26 0.00055 24.6 -0.0 28 7-34 120-149 (181)
13 PF02550 AcetylCoA_hydro: Acet 21.9 33 0.00071 23.3 0.2 36 3-40 155-190 (198)
14 PHA02754 hypothetical protein; 20.3 62 0.0013 19.6 1.1 10 28-37 29-38 (67)
No 1
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=99.55 E-value=2.6e-15 Score=107.65 Aligned_cols=40 Identities=55% Similarity=0.931 Sum_probs=39.0
Q ss_pred CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS 40 (67)
Q Consensus 1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~ 40 (67)
||||||+|||||||||+.|+|+|+++++||+|||+||+++
T Consensus 178 ~A~AAk~~IvevEeIV~~gel~P~~v~tPg~~Vd~vV~~~ 217 (220)
T COG1788 178 MAMAAKRTIVEVEEIVPLGELDPEEVVTPGIFVDAVVEVP 217 (220)
T ss_pred HHhhcCeEEEEEEeeeccCccCccceecchheeEEEEecC
Confidence 7999999999999999999999999999999999999976
No 2
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=99.52 E-value=9.9e-15 Score=103.37 Aligned_cols=40 Identities=40% Similarity=0.698 Sum_probs=38.3
Q ss_pred CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS 40 (67)
Q Consensus 1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~ 40 (67)
||+|||+||||||+||+.|+|+|++|++||+|||+||+.+
T Consensus 178 ~A~AA~~vIv~ve~iV~~g~l~P~~v~iPg~~VD~VV~~~ 217 (219)
T PRK09920 178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQ 217 (219)
T ss_pred HHhhCCeEEEEEEEEecCCCcCCceEEcCceeEEEEEecC
Confidence 7999999999999999999999999999999999999854
No 3
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=99.50 E-value=1.7e-14 Score=102.25 Aligned_cols=40 Identities=50% Similarity=0.900 Sum_probs=38.5
Q ss_pred CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS 40 (67)
Q Consensus 1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~ 40 (67)
||+|||.||||||+||+.|+|+|++|++||+|||+||++.
T Consensus 181 ~A~AAk~vIv~vE~IV~~g~l~P~~v~iPg~~VDaVv~~~ 220 (222)
T TIGR02429 181 MAMAAKTTIAQVSQVVELGELDPEDVITPGIFVQRVVEVR 220 (222)
T ss_pred HHhhcCcEEEEEEEEecCCCcCCceEEcCceEEEEEEeCC
Confidence 7999999999999999999999999999999999999864
No 4
>KOG3822|consensus
Probab=99.41 E-value=1.3e-13 Score=106.34 Aligned_cols=54 Identities=54% Similarity=0.865 Sum_probs=51.5
Q ss_pred CcccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceeeeeeeec
Q psy10006 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWC 54 (67)
Q Consensus 1 mA~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~~t~~~~ 54 (67)
|++|||++++||||||+.|.+.|++||+|+|||++++.+.+++|+||+.+....
T Consensus 231 MCkAak~TvvEVEEIV~iGa~aP~diHvP~IYv~RlikG~~Y~KriERl~i~~e 284 (516)
T KOG3822|consen 231 MCKAAKVTVVEVEEIVEIGAFAPEDIHVPNIYVHRLIKGQKYEKRIERLTILKE 284 (516)
T ss_pred cchhccceEEEEeeeeccCccChhhccccceeeeeeeccccccchhhhceeccc
Confidence 899999999999999999999999999999999999999999999999997653
No 5
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=99.25 E-value=1.6e-12 Score=101.97 Aligned_cols=51 Identities=27% Similarity=0.529 Sum_probs=45.6
Q ss_pred Cccccc----EeEEEeceEeeCCCCCCCceeCCceeeeEEEecCCcccceeeeeeee
Q psy10006 1 MCKAAK----TTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGW 53 (67)
Q Consensus 1 mA~AAk----~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~~e~~ie~~t~~~ 53 (67)
||+||| +|||||+++|+.|+|.|++|.+||++|||||+.+++++| +||...
T Consensus 200 iAqAakn~gG~VIaQVkrvv~~gsl~pk~V~VPG~LVDyvvV~~~~~~h--~Qt~~~ 254 (527)
T COG4670 200 IAQAAKNNGGIVIAQVKRVVKKGTLKPKDVRVPGILVDYVIVVEDPEDH--WQTGST 254 (527)
T ss_pred HHHHHHhcCCeEEEEehhhhhccCCCcceeEcCcceeeEEEEecChhhh--hhhccc
Confidence 588998 999999999999999999999999999999988766788 777644
No 6
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=98.37 E-value=1.2e-07 Score=64.81 Aligned_cols=38 Identities=45% Similarity=0.708 Sum_probs=35.3
Q ss_pred cccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEec
Q psy10006 2 CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQC 39 (67)
Q Consensus 2 A~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~ 39 (67)
|+|+++||++|+++|+.+.+.|..+.+||++||+||+.
T Consensus 180 a~a~~~tiv~ve~iv~~~~~~~~~~~iPg~~Vd~Vvea 217 (217)
T PF01144_consen 180 AMAAKITIVTVEEIVEEGRRDPLRVVIPGVLVDAVVEA 217 (217)
T ss_dssp HHCEEEEEEEEEEEECTTTSEEEEEEBTGGGHSEEEET
T ss_pred cccceEEEEEEEEEeccCCccceEEEeCCCchHHeEeC
Confidence 45799999999999999999999999999999999963
No 7
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=97.72 E-value=2.1e-05 Score=62.76 Aligned_cols=37 Identities=22% Similarity=0.491 Sum_probs=32.4
Q ss_pred Cccccc----EeEEEeceEeeCCCCCCCceeCCceeeeEEEecCC
Q psy10006 1 MCKAAK----TTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN 41 (67)
Q Consensus 1 mA~AAk----~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~~ 41 (67)
+|+||+ +|||||++||+ .+..+.+|+.+||+||+++.
T Consensus 166 aaeAAk~~agiVIVEVNeIVd----~~PrV~IP~s~VD~VVEa~~ 206 (543)
T TIGR01110 166 IVEATAFRDGIVIAQVNELVD----KLPRVDIPASWVDFVIESPK 206 (543)
T ss_pred HHHhhhhcCCEEEEEECccCC----CCCcEEcChhheEEEEEcCC
Confidence 356777 99999999999 47888999999999999874
No 8
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=93.41 E-value=0.064 Score=42.77 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=30.4
Q ss_pred cccccEeEEEeceEeeCCCCCCC-ceeCCceeeeEEEecCC
Q psy10006 2 CKAAKTTIVEVEELVNIGDLDPD-SIHVPGIFVNRIVQCSN 41 (67)
Q Consensus 2 A~AAk~vIvqve~iV~~G~l~P~-~V~iPGi~VD~VV~~~~ 41 (67)
|.+|++||++++++++. |. ...+|.-.|||||++..
T Consensus 176 A~~A~kVIaevn~~vP~----p~g~~~Ih~s~VD~VVEvd~ 212 (492)
T TIGR01584 176 AQYADKVVAITDSLVPY----PNTPASIKQTQVDYVVKVDA 212 (492)
T ss_pred HHhCCEEEEEECCCCCC----CCCCCccChhheEEEEEeCC
Confidence 67799999999999987 22 47889999999999753
No 9
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=90.69 E-value=0.2 Score=39.50 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=28.6
Q ss_pred CcccccEeEEEeceEeeCC----------CCCCCceeCCce----------------eeeEEEecC
Q psy10006 1 MCKAAKTTIVEVEELVNIG----------DLDPDSIHVPGI----------------FVNRIVQCS 40 (67)
Q Consensus 1 mA~AAk~vIvqve~iV~~G----------~l~P~~V~iPGi----------------~VD~VV~~~ 40 (67)
||+|||+||+||++.++.- ..+|+...+|.. =||+||+..
T Consensus 145 aa~aAk~VIvEVN~~mP~~~~~~~~~~~~~~~p~~~~ip~~~~~~~~G~~~i~i~~s~vd~ive~~ 210 (485)
T TIGR03458 145 FLELADKVIVEVNTWQPLELEGMHDIYEPGDPPHRRPIPITTPGDRIGTPYIQIDPDKIVAVVETN 210 (485)
T ss_pred HHHhCCEEEEEECCCCChhhhccccccccCCCCcCccccccCccccCCCcceeCCHHHeEEEEEcC
Confidence 5789999999999999843 335555544433 378888764
No 10
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=80.84 E-value=1.4 Score=35.27 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=24.8
Q ss_pred cccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006 2 CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS 40 (67)
Q Consensus 2 A~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~ 40 (67)
|+-|++||+=.+.+|+.-..+ +.+|..+|||||+..
T Consensus 153 A~yA~~VV~iTD~Lv~yP~~p---~sI~q~~VDyVV~Vd 188 (466)
T PF04223_consen 153 AQYADKVVAITDNLVPYPNTP---ASIPQTQVDYVVVVD 188 (466)
T ss_dssp HHH-SEEEEEESSEE-SS-SS----SB-GGG-SEEEE-S
T ss_pred HHhcCcEEEEecCCCCCCCCC---CCcccceeeEEEEec
Confidence 456889999999999987653 779999999999875
No 11
>PF10295 DUF2406: Uncharacterised protein (DUF2406); InterPro: IPR018809 This entry represents a family of small proteins conserved in fungi. The function is not known.
Probab=57.62 E-value=5.7 Score=24.24 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=10.8
Q ss_pred eccccCCCCCCCC
Q psy10006 53 WCNRRENPNRNRD 65 (67)
Q Consensus 53 ~~~~~~~~~~~~~ 65 (67)
..++..||+|+|+
T Consensus 41 ~~PD~SNPTR~R~ 53 (69)
T PF10295_consen 41 TDPDRSNPTRSRD 53 (69)
T ss_pred CCCCCCCCCcccc
Confidence 3577999999996
No 12
>PTZ00155 40S ribosomal protein S9; Provisional
Probab=23.95 E-value=26 Score=24.65 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=23.4
Q ss_pred EeEEEeceEeeCCCC--CCCceeCCceeee
Q psy10006 7 TTIVEVEELVNIGDL--DPDSIHVPGIFVN 34 (67)
Q Consensus 7 ~vIvqve~iV~~G~l--~P~~V~iPGi~VD 34 (67)
.+|-|+..+|+-|.| +++.|.+|+++|-
T Consensus 120 ~ti~~ARqlI~HGHI~V~~~~V~~Ps~~V~ 149 (181)
T PTZ00155 120 KSIHHARVLIRQRHIRVGKQIVDIPSFLVR 149 (181)
T ss_pred CCHHHhhhheeCCCEEECCEEeccCceEec
Confidence 456778889999988 8999999998764
No 13
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=21.88 E-value=33 Score=23.30 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=20.1
Q ss_pred ccccEeEEEeceEeeCCCCCCCceeCCceeeeEEEecC
Q psy10006 3 KAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCS 40 (67)
Q Consensus 3 ~AAk~vIvqve~iV~~G~l~P~~V~iPGi~VD~VV~~~ 40 (67)
..|+++|+||-+=.+.-.=....+|+--| |+||+.+
T Consensus 155 e~A~~vI~eVN~~~P~~~G~~~~ihis~V--d~Ive~~ 190 (198)
T PF02550_consen 155 EQAKKVIVEVNPNMPRTFGIDTLIHISEV--DYIVEDD 190 (198)
T ss_dssp HHTSEEEEEEETTSTS-EETSTEEEGGG---SEEEEEG
T ss_pred hcCCeEEEEcCCCCCCCCCCCCccccccC--CEEEeCC
Confidence 45789999987432221112344445444 9998854
No 14
>PHA02754 hypothetical protein; Provisional
Probab=20.34 E-value=62 Score=19.60 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=8.0
Q ss_pred CCceeeeEEE
Q psy10006 28 VPGIFVNRIV 37 (67)
Q Consensus 28 iPGi~VD~VV 37 (67)
--|+|+|++=
T Consensus 29 e~GiYi~RIk 38 (67)
T PHA02754 29 EAGIYIDRIK 38 (67)
T ss_pred hCceEEEEEE
Confidence 4699999874
Done!