RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10006
(67 letters)
>gnl|CDD|224702 COG1788, AtoD, Acyl CoA:acetate/3-ketoacid CoA transferase, alpha
subunit [Lipid metabolism].
Length = 220
Score = 68.4 bits (168), Expect = 4e-16
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
M AAK TIVEVEE+V +G+LDP+ + PGIFV+ +V
Sbjct: 178 MAMAAKRTIVEVEEIVPLGELDPEEVVTPGIFVDAVV 214
>gnl|CDD|131482 TIGR02429, pcaI_scoA_fam, 3-oxoacid CoA-transferase, A subunit.
Various members of this family are characterized as the
A subunits of succinyl-CoA:3-ketoacid-CoA transferase
(EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase
(EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase
(EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase
(EC 2.8.3.9). This represents a very distinct clade with
strong sequence conservation within the larger family
defined by pfam01144. The B subunit represents a
different clade in pfam01144, described by TIGR02428.
The two are found in general as tandem genes and
occasionally as a fusion.
Length = 222
Score = 64.4 bits (157), Expect = 1e-14
Identities = 20/41 (48%), Positives = 30/41 (73%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN 41
M AAKTTI +V ++V +G+LDP+ + PGIFV R+V+ +
Sbjct: 181 MAMAAKTTIAQVSQVVELGELDPEDVITPGIFVQRVVEVRD 221
>gnl|CDD|214882 smart00882, CoA_trans, Coenzyme A transferase. Coenzyme A (CoA)
transferases belong to an evolutionary conserved family
of enzymes catalyzing the reversible transfer of CoA
from one carboxylic acid to another. They have been
identified in many prokaryotes and in mammalian tissues.
The bacterial enzymes are heterodimer of two subunits (A
and B) of about 25 Kd each while eukaryotic SCOT consist
of a single chain which is colinear with the two
bacterial subunits.
Length = 212
Score = 53.4 bits (129), Expect = 2e-10
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 1 MCKAAKTTIVEVEELVNIGDLDPDSIH--VPGIFVNRIV 37
AAK IV+VEE+V++G LDPD + +PG+ V+ +V
Sbjct: 174 TAAAAKKVIVQVEEIVDLGVLDPDPVRLLIPGVLVDAVV 212
>gnl|CDD|201623 pfam01144, CoA_trans, Coenzyme A transferase.
Length = 216
Score = 52.3 bits (126), Expect = 4e-10
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
AAK TI+EVEE+V +G+L P ++H+PG+ V+ +V
Sbjct: 181 AAKVTILEVEEIVEVGELLPLTVHIPGVLVDAVV 214
>gnl|CDD|182146 PRK09920, PRK09920, acetyl-CoA:acetoacetyl-CoA transferase subunit
alpha; Provisional.
Length = 219
Score = 45.1 bits (107), Expect = 2e-07
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 4 AAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
AA T+VE +ELV G+L PD I PG ++ I+
Sbjct: 181 AADITLVEPDELVETGELQPDHIVTPGAVIDHII 214
>gnl|CDD|227016 COG4670, COG4670, Acyl CoA:acetate/3-ketoacid CoA transferase
[Lipid metabolism].
Length = 527
Score = 33.8 bits (78), Expect = 0.002
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 1 MCKAAK----TTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
+ +AAK I +V+ +V G L P + VPGI V+ ++
Sbjct: 200 IAQAAKNNGGIVIAQVKRVVKKGTLKPKDVRVPGILVDYVI 240
>gnl|CDD|217366 pfam03098, An_peroxidase, Animal haem peroxidase.
Length = 521
Score = 27.3 bits (61), Expect = 0.42
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 48 RSVDGWCNRRENPN 61
RS DG CN +NP
Sbjct: 2 RSADGSCNNLQNPL 15
>gnl|CDD|240408 PTZ00413, PTZ00413, lipoate synthase; Provisional.
Length = 398
Score = 25.9 bits (57), Expect = 1.3
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 2 CKAAKTTIVE-VEELVN-IGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGW 53
AK I + E + + D+ P V IF+ R + N DK + S++G+
Sbjct: 16 AARAKCGIGKPSESTKSAVADVPPKDPQVKQIFLERFRERLNSDKTGKNSLEGF 69
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 25.4 bits (55), Expect = 2.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 10 VEVEELVNIGDLDPDSIHVPGIFVNRIVQ--CSN 41
+E + ++ GDL PDS+ V GI +RI + C N
Sbjct: 48 IEAKRYMDAGDLVPDSV-VIGIIKDRIREADCKN 80
>gnl|CDD|235005 PRK02122, PRK02122, glucosamine-6-phosphate deaminase-like protein;
Validated.
Length = 652
Score = 25.0 bits (55), Expect = 3.1
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 13 EELVNIGDLDPDSIHVPG--IFVNRIVQ-CSNYDKRIER 48
E L + D+ P++IH+P I I + C +Y+++IE
Sbjct: 117 ENLFDHVDIPPENIHIPDGTIPKEEIDEYCRDYEEKIEA 155
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
to the GT1 family of glycosyltransferases. The
sucrose-phosphate synthases in this family may be unique
to plants and photosynthetic bacteria. This enzyme
catalyzes the synthesis of sucrose 6-phosphate from
fructose 6-phosphate and uridine 5'-diphosphate-glucose,
a key regulatory step of sucrose metabolism. The
activity of this enzyme is regulated by phosphorylation
and moderated by the concentration of various
metabolites and light.
Length = 398
Score = 24.8 bits (55), Expect = 3.2
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 7 TTIVEVEELVNIGDLDPDSIHV--PGI 31
+T E EEL ++ P I V PG+
Sbjct: 170 STPQEAEELYSLYGAYPRRIRVVPPGV 196
>gnl|CDD|147008 pfam04639, Baculo_E56, Baculoviral E56 protein, specific to ODV
envelope. This family represents the E56 protein, which
is localises to the occlusion derived virus (ODV)
envelope, but not to the budded virus (BV) envelope.
Length = 308
Score = 23.8 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 39 CSNYDKRIERSVDGWCNRRENPNRNRD 65
C+ Y+ E+SV C R +PN + D
Sbjct: 200 CNGYNYETEKSV---C-RASDPNADPD 222
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.421
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,413,572
Number of extensions: 248107
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 12
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)