RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10006
         (67 letters)



>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU;
           MCSG,PSI-biology, structural genomics, midwest center
           for ST genomics; 2.29A {Helicobacter pylori}
          Length = 235

 Score = 94.3 bits (235), Expect = 3e-26
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
              AAK  + EVEE+V  G+LDPD IH+PGI+V  I +   ++KRIE+
Sbjct: 181 CAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEKRIEK 228


>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A;
           CO-expressed complex, hetero-tetramer, structural
           genomics, PSI-2; 2.59A {Bacillus subtilis}
          Length = 241

 Score = 92.4 bits (230), Expect = 2e-25
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
              A K TI E EE+V  G+LDPD IH PGI+V  +V  ++ +KRIE+
Sbjct: 181 AAMAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEK 228


>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI,
           protein structure initiative, midwest center for
           structural genomics, MCSG; 1.90A {Escherichia coli}
           SCOP: c.124.1.2
          Length = 220

 Score = 81.1 bits (201), Expect = 3e-21
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNY 42
           +  AA  T+VE +ELV  G+L PD I  PG  ++ I+     
Sbjct: 178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQES 219


>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial;
           SCOT, COA transferase, dynamic domain, glycerol,
           mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A*
           1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
          Length = 481

 Score = 78.3 bits (193), Expect = 3e-19
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242


>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
           structural genomi montreal-kingston bacterial structural
           genomics initiative; 1.90A {Escherichia coli} SCOP:
           c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
          Length = 531

 Score = 69.7 bits (171), Expect = 3e-16
 Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 1   MCKAA-----KTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERS 49
           +   A        +++V+++V    L P S+ +PG  V+ +V   +  +    +
Sbjct: 210 VIAQAVHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGA 263


>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein
           fermentation; 2.50A {Acidaminococcus fermentans} SCOP:
           c.124.1.2
          Length = 317

 Score = 66.3 bits (162), Expect = 4e-15
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 1   MCKAAKTTIVEVEELVNIGDL--DPDSIHVPGIFVNRIVQC 39
           + +AAK TIV  EE+++  ++  DP    +PG+ V+ +V  
Sbjct: 200 IAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVVLA 240


>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase,
          peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A
          {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A*
          1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A*
          1myp_A* 3zs0_A*
          Length = 104

 Score = 28.4 bits (63), Expect = 0.084
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 48 RSVDGWCNRRENPNR 62
          R++ G CN R +P  
Sbjct: 8  RTITGMCNNRRSPTL 22


>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
          phenyl isothiocyanat iodide, PEG, edman reagent; HET:
          SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
          2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
          3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
          3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
          Length = 595

 Score = 28.4 bits (62), Expect = 0.15
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 48 RSVDGWCNRRENPNR 62
          R++ G CN R +P  
Sbjct: 22 RTITGDCNNRRSPAL 36


>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
           protein; HET: ADP; 2.11A {Methanothermobacter
           thermautotrophicusorganism_taxid}
          Length = 324

 Score = 25.2 bits (55), Expect = 1.7
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 10/56 (17%)

Query: 2   CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIERSVDGWCNRR 57
               + +I E E  +    L+  SIH  G+ VN+++         E S   +CN R
Sbjct: 229 VIPEEMSIYESERAM--KALEKYSIHADGVIVNQVLP--------EESDCEFCNAR 274


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
          programmed cell death; HET: DTP; 6.90A {Drosophila
          melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 1.9
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 10/59 (16%)

Query: 9  IVEVEELVNIGDLD----PDSIHVPGIF----VNRIVQCSNYDKRIERSVDGWCNRREN 59
          I+ V E   + + D     D      I     ++ I+   +      R      +++E 
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77


>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
           alpha beta, substrate AS catalysis; 2.10A
           {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
          Length = 438

 Score = 24.6 bits (54), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 11  EVEELVNIGDLDPDSIHV--PGIFVNR 35
           E+++L++  D DPD I V  PG  V  
Sbjct: 195 EMQDLMHHYDADPDRISVVSPGADVEL 221


>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
           ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
           coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
           1ii9_A*
          Length = 589

 Score = 24.5 bits (53), Expect = 2.7
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 2   CKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
                T ++E   L    DL+   IH  G  +N  +
Sbjct: 497 TLPETTPVLEAANLQ--ADLERAGIHPWGWIINNSL 530


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0611    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,096,882
Number of extensions: 51199
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 13
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)