RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10006
         (67 letters)



>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 242

 Score = 83.5 bits (206), Expect = 3e-22
 Identities = 29/48 (60%), Positives = 40/48 (83%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSNYDKRIER 48
           MCKAA+TT+VEVEE+V+IG   P+ IH+P I+V+R+V+   Y+KRIER
Sbjct: 195 MCKAAETTVVEVEEIVDIGSFAPEDIHIPKIYVHRLVKGEKYEKRIER 242


>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia
           coli [TaxId: 562]}
          Length = 219

 Score = 62.9 bits (152), Expect = 1e-14
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQC 39
           +  AA  T+VE +ELV  G+L PD I  PG  ++ I+  
Sbjct: 178 IALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVS 216


>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 273

 Score = 57.7 bits (139), Expect = 1e-12
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIVQCSN 41
           +       +++V+++V    L P S+ +PG  V+ +V   +
Sbjct: 212 VHNNGGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPD 252


>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
           {Acidaminococcus fermentans [TaxId: 905]}
          Length = 317

 Score = 54.2 bits (130), Expect = 3e-11
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 1   MCKAAKTTIVEVEELVNIGDL--DPDSIHVPGIFVNRIVQCSN 41
           + +AAK TIV  EE+++  ++  DP    +PG+ V+ +V    
Sbjct: 200 IAEAAKYTIVTCEEIISDEEIRRDPTKNDIPGMCVDAVVLAPY 242


>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 221

 Score = 36.8 bits (85), Expect = 5e-05
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 1   MCKAAKTTIVEVEELVNIGDLDPDSIHVPGIFVNRIV 37
               AK  IVE+    +        I++P     R  
Sbjct: 151 FAIFAKQVIVEINLAHSTNLEGLHDIYIPTYRPTRTP 187


>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 570

 Score = 28.2 bits (62), Expect = 0.065
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 48 RSVDGWCNRRENPN 61
          R++ G CN R +P 
Sbjct: 8  RTITGMCNNRRSPT 21


>d1o59a2 b.18.1.22 (A:194-343) Allantoicase {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 150

 Score = 22.9 bits (49), Expect = 4.1
 Identities = 5/15 (33%), Positives = 7/15 (46%)

Query: 51 DGWCNRRENPNRNRD 65
          DGW  +R     + D
Sbjct: 39 DGWETKRSRQPGHTD 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 277,238
Number of extensions: 10287
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 8
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)