BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10008
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82 KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
K T+N +G + AV + G+ LF P+A+ + C+ C + C++C
Sbjct: 44 KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 102
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
+A YCS C+++AW H+ EC ++RLL + KL+ S S
Sbjct: 103 VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 156
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
++ Y LE+++ + R E L Q V
Sbjct: 157 EKLYSFYDLESNINKLTEDRKEGLRQLV 184
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82 KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
K T+N +G + AV + G+ LF P+A+ + C+ C + C++C
Sbjct: 8 KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 66
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
+A YCS C+++AW H+ EC ++RLL + KL+ S S
Sbjct: 67 VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 120
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
++ Y LE+++ + R E L Q V
Sbjct: 121 EKLYSFYDLESNINKLTEDRKEGLRQLV 148
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82 KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
K T+N +G + AV + G+ LF P+A+ + C+ C + C++C
Sbjct: 8 KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 66
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
+A YCS C+++AW H+ EC ++RLL + KL+ S S
Sbjct: 67 VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 120
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
++ Y LE+++ + R E L Q V
Sbjct: 121 EKLYSFYDLESNINKLTEDRKEGLRQLV 148
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82 KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
K T+N +G + AV + G+ LF P+A+ + C+ C + C++C
Sbjct: 9 KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 67
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
+A YCS C+++AW H+ EC ++RLL + KL+ S S
Sbjct: 68 VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 121
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
++ Y LE+++ + R E L Q V
Sbjct: 122 EKLYSFYDLESNINKLTEDRKEGLRQLV 149
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 81 IKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNEC 140
+++ TS KGR + A ++ D +F E+ + V+ C+ C C +C
Sbjct: 9 VEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQC 68
Query: 141 ILAVYCSESCRREAWLRYHRWEC 163
A YC +C+++AWL H+ EC
Sbjct: 69 KFAHYCDRTCQKDAWLN-HKNEC 90
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 22/148 (14%)
Query: 82 KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
K T+N +G + AV + G+ LF P+A+ + C+ C + C++C
Sbjct: 10 KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCR 68
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
+A YCS C+++AW H+ EC ++RLL + KL+ S S
Sbjct: 69 VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLMDGAPSES 122
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
++ Y LE+++ + + E L Q V
Sbjct: 123 EKLYSFYDLESNINKLTEDKKEGLRQLV 150
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 82 KMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECI 141
K T+N +G + AV + G+ LF P+A+ + C+ C C++C
Sbjct: 9 KFATAN-RGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLXRCSQCR 67
Query: 142 LAVYCSESCRREAWLRYHRWECH-----------GALRLLEAVGIAHLALKLI-LVSSHS 189
+A YCS C+++AW H+ EC ++RLL + KL S S
Sbjct: 68 VAKYCSAKCQKKAWPD-HKRECKCLKSCKPRYPPDSVRLL-----GRVVFKLXDGAPSES 121
Query: 190 DRYKEVYHLETHLQDM---RPEDLYQYV 214
++ Y LE+++ + R E L Q V
Sbjct: 122 EKLYSFYDLESNINKLTEDRKEGLRQLV 149
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 86 SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
S KGR + A++ GD LF A+V+ ++C +C T C C A Y
Sbjct: 14 SPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFY 73
Query: 146 CSESCRREAWLRYHRWEC 163
C+ C++E W H+ EC
Sbjct: 74 CNVECQKEDW-PMHKLEC 90
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 86 SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
S KGR + A++ GD LF A+V+ ++C +C T C C A Y
Sbjct: 14 SPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFY 73
Query: 146 CSESCRREAWLRYHRWEC 163
C+ C++E W H+ EC
Sbjct: 74 CNVECQKEDW-PMHKLEC 90
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 86 SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
S KGR + A++ GD LF A+V+ ++C +C T C C A Y
Sbjct: 14 SPGKGRGLRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCKQAFY 73
Query: 146 CSESCRREAWLRYHRWEC 163
C+ C++E W H+ EC
Sbjct: 74 CNVECQKEDW-PMHKLEC 90
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 86 SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVY 145
S KGR + A+ H GD LF A V+ +C C C C A Y
Sbjct: 14 SAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFY 73
Query: 146 CSESCRREAWLRYHRWECHGALRLLE 171
C C++E W H+ EC + L E
Sbjct: 74 CDVECQKEDW-PLHKLECSSMVVLGE 98
>pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
pdb|1HGX|B Chain B, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
Length = 183
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 86 SNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAP---IPCNECIL 142
+N +GRHV+ VED+ + + P S+ C C I +P + C
Sbjct: 91 TNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKPASLKVCTLCDKDIGKKAYDVPIDYCGF 150
Query: 143 AVYCSESCRREAWLRYHRWECHGALRLLEAVGI 175
V ++ + ++ H R L +GI
Sbjct: 151 VV-------ENRYIIGYGFDFHNKYRNLPVIGI 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,314,760
Number of Sequences: 62578
Number of extensions: 174363
Number of successful extensions: 359
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 16
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)