RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10008
(214 letters)
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger.
Length = 39
Score = 39.7 bits (93), Expect = 3e-05
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
C C + C+ C YCS+ C++ W YH+ EC
Sbjct: 1 CAVCGKEALKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39
>gnl|CDD|234565 PRK00002, aroB, 3-dehydroquinate synthase; Reviewed.
Length = 358
Score = 37.0 bits (87), Expect = 0.004
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 153 EAWLRYHRWECHGALRLLEAVGI-----AHLALKLILVS-SHSDRYKEV---YHLETHLQ 203
EA Y +W HG EAV I A L+ +L L+S + ++R + + L T L
Sbjct: 251 EAETGYGKWL-HG-----EAVAIGMVMAARLSERLGLLSEADAERIRALLERAGLPTSLP 304
Query: 204 DMRPEDLYQY 213
D+ E L +
Sbjct: 305 DLDAEALLEA 314
>gnl|CDD|173954 cd08195, DHQS, Dehydroquinate synthase (DHQS) catalyzes the
conversion of DAHP to DHQ in shikimate pathway for
aromatic compounds synthesis. Dehydroquinate synthase
(DHQS) catalyzes the conversion of
3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
dehydroquinate (DHQ) in the second step of the shikimate
pathway. This pathway, which involves seven sequential
enzymatic steps in the conversion of erythrose
4-phosphate and phosphoenolpyruvate into chorismate for
subsequent synthesis of aromatic compounds, is found in
bacteria, microbial eukaryotes, and plants, but not in
mammals. Therefore, enzymes of this pathway are
attractive targets for the development of non-toxic
antimicrobial compounds, herbicides and anti-parasitic
agents. The activity of DHQS requires nicotinamide
adenine dinucleotide (NAD) as cofactor. A single active
site in DHQS catalyzes five sequential reactions
involving alcohol oxidation, phosphate elimination,
carbonyl reduction, ring opening, and intramolecular
aldol condensation. The binding of substrates and
ligands induces domain conformational changes. In some
fungi and protozoa, this domain is fused with the other
four domains in shikimate pathway and forms a
penta-domain AROM protein, which catalyzes steps 2-6 in
the shikimate pathway.
Length = 345
Score = 31.3 bits (72), Expect = 0.38
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 153 EAWLRYHRWECHGALRLLEAVGI-----AHLALKL-ILVSSHSDRYKEV---YHLETHLQ 203
EA Y HG EAV I A L+ +L +L +R +++ L T L
Sbjct: 244 EALTGYGTLL-HG-----EAVAIGMVAAARLSERLGLLSEEDLERIEKLLKKLGLPTSLP 297
Query: 204 DMRPEDLYQY 213
D+ EDL +
Sbjct: 298 DLDAEDLLEA 307
>gnl|CDD|198356 cd07778, FGGY_L-RBK_like, L-ribulokinase-like proteins; a subfamily
of the FGGY family of carbohydrate kinases. This
subfamily is composed of a group of putative bacterial
L-ribulokinases (RBK; EC 2.7.1.16) and similar proteins.
L-RBK catalyzes the MgATP-dependent phosphorylation of a
variety of sugar substrates. Members of this subfamily
belong to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 466
Score = 30.3 bits (69), Expect = 0.78
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 25/79 (31%)
Query: 69 GESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLF----VEKPVA-------FVILP 117
G++ T M A+N + +T N V G ++F +EKP++ V P
Sbjct: 250 GDAGTGMVATNSVAPRTGN-----------VSAGTSIFAMIVLEKPLSKVYPEIDIVTTP 298
Query: 118 ---PCSMSNCNHCCTSISA 133
P +M + N+C + ++A
Sbjct: 299 DGSPVAMVHANNCTSDLNA 317
>gnl|CDD|177934 PLN02297, PLN02297, ribose-phosphate pyrophosphokinase.
Length = 326
Score = 28.9 bits (65), Expect = 2.1
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 81 IKMQTSNAKGRHVIAVED-VHKGDTL 105
++++ N GRHV+ V+D V G TL
Sbjct: 221 VRIKEGNPAGRHVVIVDDLVQSGGTL 246
>gnl|CDD|200086 TIGR01225, hutH, histidine ammonia-lyase. This enzyme deaminates
histidine to urocanic acid, the first step in histidine
degradation. It is closely related to phenylalanine
ammonia-lyase [Energy metabolism, Amino acids and
amines].
Length = 506
Score = 28.5 bits (64), Expect = 2.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 58 SSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVE 97
+SV S+P+ A E H M A K++ R VIA+E
Sbjct: 399 ASVDSIPTSANQEDHVSMGAHAARKLREMIENVRRVIAIE 438
>gnl|CDD|235249 PRK04194, PRK04194, hypothetical protein; Provisional.
Length = 392
Score = 27.8 bits (63), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 180 LKLILVSSHSD-RYKEVYHLETHLQDMRPEDL 210
L+L+L + +EV LET++ D+ PE L
Sbjct: 232 LRLVLGEAEEGPEREEVVVLETNIDDLSPEVL 263
>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase.
This family represents a region of the glutamate
synthase protein. This region is expressed as a
separate subunit in the glutamate synthase alpha
subunit from archaebacteria, or part of a large
multidomain enzyme in other organisms. The aligned
region of these proteins contains a putative FMN
binding site and Fe-S cluster.
Length = 367
Score = 27.7 bits (62), Expect = 5.3
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 7 QETLSSSLKLCRLQDTSHLDFKEDVLTIEKSEENSV-------EAMSMQVSSTSSSASSS 59
+E L+ + + L+D D+ ED + IE+ E AMS + S A +
Sbjct: 27 REPLNERVPIGALRDLLEFDYAEDPIPIEEVEPALEIKTRFCTGAMSY--GALSEEAHEA 84
Query: 60 VASLPSLACGESHT 73
+A + +S+T
Sbjct: 85 LAKAMNRLGTKSNT 98
>gnl|CDD|148326 pfam06656, Tenui_PVC2, Tenuivirus PVC2 protein. This family
consists of several Tenuivirus PVC2 proteins from Rice
grassy stunt virus, Maize stripe virus and Rice hoja
blanca virus. The function of this family is unknown.
Length = 785
Score = 27.8 bits (62), Expect = 5.8
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 16/65 (24%)
Query: 90 GRHVIAVEDVHKGDTLFVEK---------------PVAFVILP-PCSMSNCNHCCTSISA 133
++A ED ++ + P + LP S +NC +S+S
Sbjct: 292 DEGLLADEDSIAPNSNVPDTVPTKARKRENGLIYIPYILMFLPLVLSSANCQDLVSSLSN 351
Query: 134 PIPCN 138
CN
Sbjct: 352 IEVCN 356
>gnl|CDD|150661 pfam10013, DUF2256, Uncharacterized protein conserved in bacteria
(DUF2256). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 42
Score = 24.9 bits (55), Expect = 6.5
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 144 VYCSESCRREA 154
YCSE CRR
Sbjct: 32 KYCSERCRRNK 42
>gnl|CDD|222400 pfam13824, zf-Mss51, Zinc-finger of mitochondrial splicing
suppressor 51. Mss51 regulates the expression of
cytochrome oxidase, so this domain is probably
DNA-binding.
Length = 55
Score = 25.0 bits (55), Expect = 7.6
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 124 CNHCCTSISAPI--PCNECILAVYCSESCRREAW---LRYHRWECHGALR 168
C HC + A + C +C + +CSE E W HR C LR
Sbjct: 2 CPHCKHDLPARVNFECPDCGIPTHCSE----EHWEDDYEEHRELC-ETLR 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.128 0.384
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,807,068
Number of extensions: 827237
Number of successful extensions: 867
Number of sequences better than 10.0: 1
Number of HSP's gapped: 866
Number of HSP's successfully gapped: 21
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)