RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10008
(214 letters)
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 90.4 bits (223), Expect = 2e-21
Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 8/144 (5%)
Query: 77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIP 136
+ +++ TS KGR + A ++ D +F E+ + V+ C+ C
Sbjct: 5 SMENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHR 64
Query: 137 CNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVGIAHLALKLILVS-------SHS 189
C +C A YC +C+++AWL H+ EC + + I+
Sbjct: 65 CGQCKFAHYCDRTCQKDAWL-NHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTE 123
Query: 190 DRYKEVYHLETHLQDMRPEDLYQY 213
V L+ H++ E+ +
Sbjct: 124 GCLVSVDDLQNHVEHFGEEEQKEL 147
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 84.5 bits (208), Expect = 2e-19
Identities = 35/146 (23%), Positives = 51/146 (34%), Gaps = 10/146 (6%)
Query: 77 ASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIP 136
A ++ S KGR + A+ H GD LF A V+ +C C
Sbjct: 5 ARGGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSK 64
Query: 137 CNECILAVYCSESCRREAWLRYHRWECHGALRLLE---------AVGIAHLALKLILVSS 187
C C A YC C++E W H+ EC + L E K+ +
Sbjct: 65 CGRCKQAFYCDVECQKEDW-PLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERT 123
Query: 188 HSDRYKEVYHLETHLQDMRPEDLYQY 213
S++ V E+HL + E
Sbjct: 124 PSEKLLAVREFESHLDKLDNEKKDLI 149
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 76.1 bits (186), Expect = 2e-16
Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 80 KIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNE 139
K++ + +G + AV + G+ LF P+A+ + C+ C + C++
Sbjct: 6 KVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQ 65
Query: 140 CILAVYCSESCRREAWLRYHRWEC------HGALRLLEAVGIAHLALKLILVSSHSDRYK 193
C +A YCS C+++AW + R + + + S S++
Sbjct: 66 CRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLY 125
Query: 194 EVYHLETHLQDMRPEDLYQY 213
Y LE+++ + +
Sbjct: 126 SFYDLESNINKLTEDRKEGL 145
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 3e-04
Identities = 30/249 (12%), Positives = 68/249 (27%), Gaps = 66/249 (26%)
Query: 5 DVQETLSSSLKL----CRL----QDTSHLDF----KEDVLTIEKSEENSVEAMSMQVSST 52
+VQ + + C++ + DF ++++ +
Sbjct: 252 NVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL- 308
Query: 53 SSSASSSVASLPSLACGES--HTLMCASNKIKM--------QTSNAKGRHVI--AVEDVH 100
LP + + A + + K +I ++ +
Sbjct: 309 -KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 101 KGDT--LFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRY 158
+ +F + PP SA IP +L++ + + + +
Sbjct: 368 PAEYRKMFDR----LSVFPP-------------SAHIP--TILLSLIWFDVIKSDVMVVV 408
Query: 159 HRWECHGALRLLE------AVGIAHLALKL-----ILVSSHS---DRYKEVYHLETHLQD 204
+ + H L+E + I + L+L + H D Y ++
Sbjct: 409 N--KLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 205 MRPEDLYQY 213
D Y Y
Sbjct: 466 PPYLDQYFY 474
Score = 27.1 bits (59), Expect = 5.8
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 191 RYKEVYHLETHLQDMRPEDLYQYV 214
R + L L ++RP + V
Sbjct: 133 RLQPYLKLRQALLELRPA---KNV 153
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.004
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 14/40 (35%)
Query: 3 KQDVQETLSSSLKLCRLQDTSHLDFKED---VLTIEKSEE 39
KQ +++ L +SLKL + +D L I+ + E
Sbjct: 19 KQALKK-LQASLKL----------YADDSAPALAIKATME 47
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 29.6 bits (66), Expect = 0.14
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
C +C S A C+ C YC C+ + W H C
Sbjct: 18 CAYC--SAEASKRCSRCQNEWYCCRECQVKHW-EKHGKTC 54
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 60
Score = 29.1 bits (65), Expect = 0.20
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 117 PPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHG 165
S +C +C A C+ C A YC C+ + W H C G
Sbjct: 11 QEDSSESCWNC--GRKASETCSGCNTARYCGSFCQHKDW-EKHHHICSG 56
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding
protein; NMR {Homo sapiens}
Length = 60
Score = 28.7 bits (64), Expect = 0.26
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 117 PPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
S +C +C A C+ C A YC C+ + W H C
Sbjct: 9 NSDSSESCWNC--GRKASETCSGCNTARYCGSFCQHKDW-EKHHHIC 52
>1pce_A PEC-60; proteinase inhibitor(kazal type); NMR {Sus scrofa} SCOP:
g.68.1.1
Length = 60
Score = 28.3 bits (63), Expect = 0.36
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 117 PPCSMSNCNHCCTSISAPIPC--------NECILAVYCSESCRREAWLRY-HRWEC 163
P C + C+ I P+ C +EC L C + ++ EC
Sbjct: 9 PICEHMTESPDCSRIYDPV-CGTDGVTYESECKL---CLARIENKQDIQIVKDGEC 60
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Length = 52
Score = 27.9 bits (62), Expect = 0.44
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 137 CNECILAVYCSESCRREAWLRYHRWEC 163
C C YCS C+R+ W + H+ C
Sbjct: 23 CTGCHKVNYCSTFCQRKDW-KDHQHIC 48
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 28.0 bits (62), Expect = 0.48
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 110 PVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
+ S +C +C A C+ C A YC C+ + W H C
Sbjct: 6 QGENLYFQGDSSESCWNC--GRKASETCSGCNTARYCGSFCQHKDW-EKHHHIC 56
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.61
Identities = 27/143 (18%), Positives = 42/143 (29%), Gaps = 51/143 (35%)
Query: 63 LPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMS 122
+P G S+ M A N ++ S ++ VE V K VE V +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE-IVNY--------- 1846
Query: 123 NCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECHGALRLLEAVG--IAHLAL 180
N N+ V + G LR L+ V + + L
Sbjct: 1847 NVE------------NQQY--V-AA-----------------GDLRALDTVTNVLNFIKL 1874
Query: 181 KLI-----LVSSHSDRYKEVYHL 198
+ I S + + HL
Sbjct: 1875 QKIDIIELQKSLSLEEVEG--HL 1895
>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
function, plasmid, PSI-2, protein structure initiative;
1.50A {Deinococcus radiodurans}
Length = 254
Score = 27.9 bits (63), Expect = 2.4
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 24 HLDFKEDVLTIEKSEENSVEAMSMQVSSTSSSASSSVA 61
HLD D + + ++ E + + V++T ++ ++A
Sbjct: 9 HLDLYPDPVAVARACEERQLTV-LSVTTTPAAWRGTLA 45
>1f2l_A Fractalkine; chemoattractant, neurotactin, cytokine; 2.00A {Homo
sapiens} SCOP: d.9.1.1 PDB: 3ona_B 1b2t_A
Length = 76
Score = 26.3 bits (58), Expect = 2.7
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 118 PCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREA 154
++ CN C+ +++ IP I SC + A
Sbjct: 2 HHGVTKCNITCSKMTSKIPVALLIHYQQNQASCGKRA 38
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 27.9 bits (61), Expect = 3.0
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 79 NKIKMQTSNAKGRHVIAVEDVHKGDTLF 106
+M +G + A D+ +
Sbjct: 93 EGFEMVNFKEEGFGLRATRDIKAEELFL 120
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg
IONS, pyrophosphate, transition state analogue; HET:
IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB:
1dqp_A*
Length = 230
Score = 26.8 bits (60), Expect = 4.3
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 20/61 (32%)
Query: 47 MQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQ-TSNAKGRHVIAVED-VHKGDT 104
++VSS + SV + + R V+ +++ V G T
Sbjct: 92 VKVSSYKGTRQESVV------------------FDEEDLKQLKEKREVVLIDEYVDSGHT 133
Query: 105 L 105
+
Sbjct: 134 I 134
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase;
flexibility, trans CIS peptide bond isomerization,
nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1
PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A*
2vfa_A*
Length = 217
Score = 26.8 bits (60), Expect = 4.8
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 47 MQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVED-VHKGDTL 105
+++ S + S+ G+ + S G++V+ VED + G T+
Sbjct: 99 IRLKSYCNDQST----------GDIKVI------GGDDLSTLTGKNVLIVEDIIDTGKTM 142
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 26.8 bits (60), Expect = 5.8
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 165 GALRLLEAVGIAHLALKLILVSSHSDRYKEVYHLET 200
G L +L+AV ++L +++ + S S+ Y + E+
Sbjct: 104 GTLHVLDAVRDSNLDCRILTIGS-SEEYGMILPEES 138
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold,
structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus
thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A*
3acd_A*
Length = 181
Score = 25.9 bits (58), Expect = 7.7
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 17/60 (28%)
Query: 47 MQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVED-VHKGDTL 105
+ +SS ++ SS GE L I GR VI VED V G TL
Sbjct: 68 IAISSYGNAFKSS---------GEVELLKDLRLPI-------HGRDVIVVEDIVDTGLTL 111
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 26.7 bits (60), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 94 IAVEDVHKGDTLFV---EK-PV 111
+ VE+V GD + V EK PV
Sbjct: 146 VPVEEVAVGDIVIVRPGEKIPV 167
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase;
glycosyltransferase, purine salvage, transferase
(glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas
foetus} SCOP: c.61.1.1
Length = 183
Score = 25.9 bits (58), Expect = 7.8
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 20/61 (32%)
Query: 47 MQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQ-TSNAKGRHVIAVED-VHKGDT 104
+ SS S + S+ I +N +GRHV+ VED + G T
Sbjct: 69 IICSSYSGTKSTGNL------------------TISKDLKTNIEGRHVLVVEDIIDTGLT 110
Query: 105 L 105
+
Sbjct: 111 M 111
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 26.3 bits (57), Expect = 9.4
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 89 KGRHVIAVEDVHKGDTLF 106
+G ++A++D+ + D +
Sbjct: 32 EGLGLVALKDISRNDVIL 49
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2,
protein structure initiative, NE SGX research center for
structural genomics; 2.04A {Vibrio cholerae} PDB:
1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Length = 177
Score = 25.9 bits (58), Expect = 9.7
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 19/61 (31%)
Query: 47 MQVSSTSSSASSSVASLPSLACGESHTLMCASNKIKMQ-TSNAKGRHVIAVED-VHKGDT 104
M SS +S SS + +I + KG+ V+ VED + G+T
Sbjct: 64 MTASSYGNSMQSS---------RDV--------RILKDLDDDIKGKDVLLVEDIIDTGNT 106
Query: 105 L 105
L
Sbjct: 107 L 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.128 0.384
Gapped
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,006,410
Number of extensions: 165840
Number of successful extensions: 543
Number of sequences better than 10.0: 1
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 42
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.6 bits)