RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10008
         (214 letters)



>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
           pea (Pisum sativum) [TaxId: 3888]}
          Length = 261

 Score = 40.3 bits (93), Expect = 6e-05
 Identities = 8/76 (10%), Positives = 26/76 (34%)

Query: 89  KGRHVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSE 148
           +G  ++A++D+ + D +       ++     + S     C+ +   +     ++     E
Sbjct: 31  EGLGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSRE 90

Query: 149 SCRREAWLRYHRWECH 164
               + +      E  
Sbjct: 91  DSVWKHYFGILPQETD 106


>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing
           protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 38

 Score = 31.5 bits (71), Expect = 0.006
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 123 NCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
           +C +C     A   C  C    YCS  C+R+ W + H+  C
Sbjct: 1   SCVNC--GREAMSECTGCHKVNYCSTFCQRKDW-KDHQHIC 38


>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
           protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 29.6 bits (66), Expect = 0.034
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 120 SMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
           S  +C +C     A   C+ C  A YC   C+ + W   H   C
Sbjct: 7   SSESCWNC--GRKASETCSGCNTARYCGSFCQHKDW-EKHHHIC 47


>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
           protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 28.8 bits (64), Expect = 0.058
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)

Query: 124 CNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWEC 163
           C +C     A   C+ C    YC   C+ + W   H   C
Sbjct: 11  CAYCSAE--ASKRCSRCQNEWYCCRECQVKHW-EKHGKTC 47


>d1f2la_ d.9.1.1 (A:) Chemokine domain of fractalkine {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 64

 Score = 26.6 bits (59), Expect = 0.47
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 121 MSNCNHCCTSISAPIPCNECILAVYCSESCRREA 154
           ++ CN  C+ +++ IP    I       SC + A
Sbjct: 1   VTKCNITCSKMTSKIPVALLIHYQQNQASCGKRA 34


>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 193

 Score = 26.1 bits (57), Expect = 2.7
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 92  HVIAVEDVHKGDTLFVEKPVAFVILPPCSMSNCNHCCTSISAPIPCN 138
            V+ V D         E     V +P  ++ + N+    +   IP N
Sbjct: 112 EVVFVNDPAIDKQAVSE--ATAVGIPVVALCDSNNSSADVDLVIPTN 156


>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit
           {Methylococcus capsulatus [TaxId: 414]}
          Length = 512

 Score = 26.4 bits (58), Expect = 3.2
 Identities = 6/53 (11%), Positives = 12/53 (22%), Gaps = 4/53 (7%)

Query: 116 LPPCSMSNCNHCCTSISAPIPCNECILA----VYCSESCRREAWLRYHRWECH 164
           +    +S    C +                   +  +   R       R+EC 
Sbjct: 401 IYIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWLAEPERYECQ 453


>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II
           {Streptomyces exfoliatus [TaxId: 1905]}
          Length = 273

 Score = 26.3 bits (56), Expect = 3.4
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 5/117 (4%)

Query: 50  SSTSSSASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVEDVHKGDTLFV-- 107
           ++  + A S V ++   A G  H L     K+    +N  G+  +        D +    
Sbjct: 18  ATVPAEAQSGVDAI---AGGYFHGLALKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGN 74

Query: 108 EKPVAFVILPPCSMSNCNHCCTSISAPIPCNECILAVYCSESCRREAWLRYHRWECH 164
              +A       +        T++ A        +A     S   +        +  
Sbjct: 75  YHSLALKDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDS 131


>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm
           (Ancylostoma caninum) [TaxId: 29170]}
          Length = 78

 Score = 24.6 bits (53), Expect = 3.8
 Identities = 5/33 (15%), Positives = 7/33 (21%)

Query: 118 PCSMSNCNHCCTSISAPIPCNECILAVYCSESC 150
            C    C+  C         +E          C
Sbjct: 9   SCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVC 41


>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
           (Rhodosporidium toruloides) [TaxId: 5286]}
          Length = 678

 Score = 25.7 bits (56), Expect = 5.5
 Identities = 4/43 (9%), Positives = 14/43 (32%)

Query: 55  SASSSVASLPSLACGESHTLMCASNKIKMQTSNAKGRHVIAVE 97
           +   +    P+    ++   +   +  +   SN     ++A  
Sbjct: 447 ANPVTTHVQPAEMANQAVNSLALISARRTTESNDVLSLLLATH 489


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.128    0.384 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 734,507
Number of extensions: 31877
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 17
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)