Query psy10009
Match_columns 235
No_of_seqs 238 out of 1226
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 15:32:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00093 nucleoside diphosphat 100.0 3.9E-37 8.5E-42 253.1 9.0 129 99-234 2-149 (149)
2 PRK14543 nucleoside diphosphat 100.0 2E-36 4.3E-41 253.1 9.5 129 99-234 5-167 (169)
3 PLN02619 nucleoside-diphosphat 100.0 2.2E-36 4.7E-41 263.2 8.3 130 99-235 88-236 (238)
4 PRK14542 nucleoside diphosphat 100.0 1.2E-35 2.5E-40 241.2 8.6 116 100-222 2-136 (137)
5 PRK14541 nucleoside diphosphat 100.0 2E-35 4.2E-40 240.7 8.6 118 100-224 2-138 (140)
6 COG0105 Ndk Nucleoside diphosp 100.0 1.6E-34 3.5E-39 229.9 8.6 113 100-219 3-134 (135)
7 PRK14545 nucleoside diphosphat 100.0 2.1E-34 4.5E-39 234.4 9.0 117 99-222 3-138 (139)
8 PRK14540 nucleoside diphosphat 100.0 4.9E-34 1.1E-38 230.9 9.0 114 99-219 2-134 (134)
9 cd04415 NDPk7A Nucleoside diph 100.0 8.8E-34 1.9E-38 228.6 7.6 109 100-217 1-131 (131)
10 KOG0888|consensus 100.0 6.5E-34 1.4E-38 234.1 6.4 130 99-235 5-156 (156)
11 PRK00668 ndk mulitfunctional n 100.0 3E-33 6.5E-38 226.1 8.6 114 100-220 2-134 (134)
12 cd04418 NDPk5 Nucleoside dipho 100.0 3.6E-33 7.9E-38 225.2 7.9 110 100-218 1-132 (132)
13 PLN02931 nucleoside diphosphat 100.0 6.2E-33 1.3E-37 233.6 8.6 118 99-223 29-168 (177)
14 cd04413 NDPk_I Nucleoside diph 100.0 1.1E-32 2.4E-37 221.7 8.4 111 100-217 1-130 (130)
15 cd04412 NDPk7B Nucleoside diph 100.0 2.5E-32 5.5E-37 220.7 8.0 111 100-217 1-134 (134)
16 cd04414 NDPk6 Nucleoside dipho 100.0 2.9E-32 6.3E-37 220.8 8.3 113 100-218 1-135 (135)
17 cd04416 NDPk_TX NDP kinase dom 100.0 3E-32 6.4E-37 219.7 7.0 110 100-217 1-132 (132)
18 cd00595 NDPk Nucleoside diphos 100.0 9.3E-32 2E-36 216.9 7.6 111 100-217 1-133 (133)
19 PF00334 NDK: Nucleoside dipho 100.0 4.6E-32 1E-36 218.7 4.2 116 100-222 1-135 (135)
20 smart00562 NDK These are enzym 100.0 7.2E-31 1.6E-35 211.9 8.2 115 100-221 1-134 (135)
21 PRK14544 nucleoside diphosphat 100.0 9.7E-31 2.1E-35 221.2 9.1 119 99-224 3-183 (183)
22 PF04500 FLYWCH: FLYWCH zinc f 99.5 6.9E-14 1.5E-18 96.9 7.0 60 25-86 1-62 (62)
23 PF03106 WRKY: WRKY DNA -bindi 85.2 2 4.4E-05 30.0 4.5 46 39-87 3-59 (60)
24 smart00774 WRKY DNA binding do 63.7 7.7 0.00017 27.1 2.6 34 51-86 20-59 (59)
25 PF03101 FAR1: FAR1 DNA-bindin 49.4 46 0.00099 24.0 5.0 25 64-88 60-89 (91)
26 PF13408 Zn_ribbon_recom: Reco 48.3 22 0.00047 23.4 2.9 27 42-69 14-42 (58)
27 PF00944 Peptidase_S3: Alphavi 22.9 47 0.001 27.4 1.3 20 146-165 108-128 (158)
28 PF06839 zf-GRF: GRF zinc fing 21.4 56 0.0012 21.0 1.2 20 47-67 18-37 (45)
No 1
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=3.9e-37 Score=253.09 Aligned_cols=129 Identities=46% Similarity=0.773 Sum_probs=119.8
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+|||+||||++.. .++|+||+.|.+.|+.+ +.+||.+|.+++||. ||||+||
T Consensus 2 ~e~Tl~lIKPdav~~-------~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val 74 (149)
T PTZ00093 2 SERTFIMVKPDGVQR-------GLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCM 74 (149)
T ss_pred CceEEEEECcchhhc-------CchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEE
Confidence 478999999999851 45799999999966666 346999999999986 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCccc
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIY 234 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~ 234 (235)
+|+|+|||+.||+||||+||.+|.|+|||++||.+.++|+||||||+++|.+||+|||++.++.+|....+.|+|
T Consensus 75 ~l~g~nav~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 149 (149)
T PTZ00093 75 VWEGKNVVKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEELVSWTSHSSKWIY 149 (149)
T ss_pred EEeCCCHHHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhccCccccchhhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2e-36 Score=253.11 Aligned_cols=129 Identities=22% Similarity=0.363 Sum_probs=119.1
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhh-----cccCCCccc-------Cc
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNL-----QNITKPLNG-------ND 154 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~-----~~~~k~f~~-------sG 154 (235)
.|+||++||||++.- .++|+||+.|.+.|+.+ +.+||. +|.+++||+ ||
T Consensus 5 ~e~Tl~iIKPDav~~-------~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsG 77 (169)
T PRK14543 5 IQKTLCIIKPDGVRR-------GLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSS 77 (169)
T ss_pred cceEEEEECcchhhc-------CchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccC
Confidence 578999999999861 46899999999966666 346895 799999986 99
Q ss_pred cEEEEEEecccHHHHHHHHhCCCCCCCCCCCCcccccccc----------cCeeEEEcCCCHHHHHHHhhhccCCCceec
Q psy10009 155 INNFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQ----------VGRNIMHGSDSVESAKKEIALWFTEKEVIG 224 (235)
Q Consensus 155 pvval~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~----------~~~N~vHgSds~e~a~~ei~~fF~~~~~~~ 224 (235)
|++||+|+|+|||+.||+|||||||..|.|+|||++||.+ .++|+||||||+|+|++||+|||++.++.+
T Consensus 78 P~valvl~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~ 157 (169)
T PRK14543 78 PVFVFVVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILT 157 (169)
T ss_pred CeEEEEEECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCcccccc
Confidence 9999999999999999999999999999999999999987 799999999999999999999999999999
Q ss_pred cccCCcCccc
Q psy10009 225 WTNASESWIY 234 (235)
Q Consensus 225 ~~~~~~~~~~ 234 (235)
|....+.|+|
T Consensus 158 ~~~~~~~~~~ 167 (169)
T PRK14543 158 YKRDDECEHY 167 (169)
T ss_pred cccccceeEe
Confidence 9999999998
No 3
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=2.2e-36 Score=263.25 Aligned_cols=130 Identities=36% Similarity=0.633 Sum_probs=121.4
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++. + +++|+||+.|.+.|+++ +.+||.+|++++||+ ||||++|
T Consensus 88 ~ErTlaiIKPDaV~----r---glvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvam 160 (238)
T PLN02619 88 MERTFIAIKPDGVQ----R---GLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAM 160 (238)
T ss_pred hceEEEEECcchhh----c---CchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEE
Confidence 57899999999986 2 56899999999977665 346999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||..+.|+|||++||.+.++|+|||||++|+|++||+|||++.|+++|....+.|+|+
T Consensus 161 vL~GenaV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei~~y~~~~~~~~y~ 236 (238)
T PLN02619 161 VWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKWIYG 236 (238)
T ss_pred EEECCcHHHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhccCCcccchhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.2e-35 Score=241.21 Aligned_cols=116 Identities=24% Similarity=0.304 Sum_probs=107.1
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|||+||||++.. .++|+||+.|.+.|+.+ +.+||.+|++++||+ ||||+||+
T Consensus 2 e~Tl~iIKPdav~~-------~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~ 74 (137)
T PRK14542 2 SRTFIMIKPDGVKN-------KHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAA 74 (137)
T ss_pred ceEEEEECcchhhc-------CchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEE
Confidence 68999999999861 46899999999966665 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCce
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEV 222 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~ 222 (235)
|+|+|||+.||+|||||||..|.|+|||++||.+.++|+||||||+++|++||+|||++.++
T Consensus 75 l~g~nav~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~ 136 (137)
T PRK14542 75 LERDNAVLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNEL 136 (137)
T ss_pred EeCCCHHHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999998765
No 5
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2e-35 Score=240.71 Aligned_cols=118 Identities=28% Similarity=0.371 Sum_probs=108.6
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|||+||||++. + .++|+|++.|.+.|+.+ +.+||.+|.+++||+ ||||+||+
T Consensus 2 e~TlaiIKPdav~----~---~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~ 74 (140)
T PRK14541 2 ERTLTILKPDCVR----K---QLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMI 74 (140)
T ss_pred ceEEEEECcchhh----c---CchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEE
Confidence 6899999999986 1 45799999999966665 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceec
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIG 224 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~ 224 (235)
|+|+|||+.||+||||+||..|.|+|||++||.+.++|+||||||+++|++||+|||++.++.+
T Consensus 75 l~g~nav~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~~~~ 138 (140)
T PRK14541 75 LEKENAVADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEEVVR 138 (140)
T ss_pred EecCcHHHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999988754
No 6
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=229.94 Aligned_cols=113 Identities=38% Similarity=0.555 Sum_probs=106.3
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhhh------------hhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTKN------------IRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~~------------~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||.+||||++. .+++|+|+..+...|+++. .++|.+|+++|||. |||+++|+
T Consensus 3 erT~~iiKPDaV~-------R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~V 75 (135)
T COG0105 3 ERTLSIIKPDAVK-------RGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMV 75 (135)
T ss_pred ceEEEEECcchhh-------hhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEE
Confidence 6899999999987 2789999999999777764 45999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~ 219 (235)
|+|+|||+.+|.|||+|||..|+|||||++||.+..+|+||||||+|+|+|||+|||++
T Consensus 76 leGe~ai~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 76 LEGENAISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred EecHhHHHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999975
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.1e-34 Score=234.43 Aligned_cols=117 Identities=28% Similarity=0.383 Sum_probs=107.3
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.++|||+||||++. + .++|+|++.|.+.|+++ +.+||.+|.+++||. ||||+||
T Consensus 3 ~e~Tl~iIKPdav~----~---~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~ 75 (139)
T PRK14545 3 GNRTFTMIKPDAVE----N---GHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAA 75 (139)
T ss_pred cceEEEEECchhhh----c---CcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEE
Confidence 36899999999985 1 45799999999966666 356999999999986 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCce
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEV 222 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~ 222 (235)
+|+|+|||+.||+++||+||+.|.|+|||++||.+.++|+||||||+++|++||+|||+..++
T Consensus 76 ~l~g~nav~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~ 138 (139)
T PRK14545 76 ILEKENAVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGREM 138 (139)
T ss_pred EEecCCHHHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHHHHHHHHHHhCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999988664
No 8
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.9e-34 Score=230.90 Aligned_cols=114 Identities=32% Similarity=0.426 Sum_probs=105.0
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++. + .++|+||+.|.+.|+.+ +.+||.+|.+++||. ||||+||
T Consensus 2 ~e~Tl~lIKPda~~----~---~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val 74 (134)
T PRK14540 2 KERTFVALKPDAVE----R---KLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAM 74 (134)
T ss_pred ceeEEEEECcchhh----c---CchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEE
Confidence 37899999999985 1 45799999999966665 456999999999986 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~ 219 (235)
+|+|+|||+.||++|||+||+.|+|+|||++||.+.++|+|||||++++|.+||+|||++
T Consensus 75 ~l~g~nav~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 75 VIEGENAISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred EEeCCChHHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999974
No 9
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=8.8e-34 Score=228.61 Aligned_cols=109 Identities=28% Similarity=0.349 Sum_probs=101.8
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|+|+||||++. . +|+|++.|.+.|+.+ +.+||.+|++++||. ||||+||+
T Consensus 1 erTl~iIKPdav~--------~-~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~ 71 (131)
T cd04415 1 EKTLALIKPDAYS--------K-IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAME 71 (131)
T ss_pred CeEEEEECcHHHH--------h-HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEE
Confidence 5799999999986 3 799999999966666 346999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhcc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF 217 (235)
|+|+|||+.||++|||+||..| .|+|||++||.+.++|+||||||+++|++||++||
T Consensus 72 l~g~nav~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 72 LVGDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred EECCcHHHHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 9999999999999999999998 89999999999999999999999999999999998
No 10
>KOG0888|consensus
Probab=100.00 E-value=6.5e-34 Score=234.14 Aligned_cols=130 Identities=37% Similarity=0.547 Sum_probs=121.1
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.++|+++||||++.- +++++|+.++.+.+|++ +.++|.+|.++|||+ |||++||
T Consensus 5 ~e~tfi~iKpd~v~~-------~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvam 77 (156)
T KOG0888|consen 5 LERTFILIKPDGVQR-------GLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAM 77 (156)
T ss_pred hhhhhheeCcchhhh-------hhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceeh
Confidence 478999999999962 66899999988877665 346999999999997 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|.|||+.||.++|||+++.| +|+|||++||++.++|++|||||.++|+|||.+||+..++..|+...+.|+||
T Consensus 78 v~~g~~~V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~~~~~~~~~~~e 156 (156)
T KOG0888|consen 78 VLEGDNVVQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVVYESQPERWLYE 156 (156)
T ss_pred hhcCCCHHHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhheecccchhhhhcC
Confidence 99999999999999999999998 99999999999999999999999999999999999999999999999999997
No 11
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=3e-33 Score=226.11 Aligned_cols=114 Identities=37% Similarity=0.562 Sum_probs=104.7
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|+|+||||++. + .++|+||+.|.+.|+.+ +.+||.+|.+++||. |||++||+
T Consensus 2 e~Tl~iIKPd~~~----~---~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~ 74 (134)
T PRK00668 2 ERTFSIIKPDAVQ----R---GLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMV 74 (134)
T ss_pred ceEEEEECchHhh----c---CcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEE
Confidence 6799999999985 2 45799999999966665 456999999999986 89999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEK 220 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~ 220 (235)
|+|+|||+.||++|||+||..|.|+|||+.||.+.++|+|||||++++|.+||+|||+++
T Consensus 75 l~g~nav~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~~ 134 (134)
T PRK00668 75 LEGENAIAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIALFFSEE 134 (134)
T ss_pred EeCchHHHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 12
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=99.98 E-value=3.6e-33 Score=225.25 Aligned_cols=110 Identities=25% Similarity=0.238 Sum_probs=102.4
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|+++||||++. . +|+||+.|.+.|+++ +.+||.+|.+++||. |||++||+
T Consensus 1 e~Tl~iIKPda~~--------~-~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~ 71 (132)
T cd04418 1 ERTLAIIKPDAVH--------K-AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMV 71 (132)
T ss_pred CeEEEEECcHHHh--------h-HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEE
Confidence 5799999999986 3 799999999966666 456999999999985 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFT 218 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~ 218 (235)
|+|+|||+.||+||||+||+.| .|+|||++||.+.++|+|||||++++|++||++||+
T Consensus 72 l~g~~aV~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 72 LARHNAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred EecCCHHHHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 9999999999999999999998 899999999999999999999999999999999996
No 13
>PLN02931 nucleoside diphosphate kinase family protein
Probab=99.98 E-value=6.2e-33 Score=233.61 Aligned_cols=118 Identities=22% Similarity=0.270 Sum_probs=107.3
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+|+|+||||++. + .++|+|++.|.+.|+++ +.+||.+|.+++||+ ||||+||
T Consensus 29 ~erTlalIKPdav~----~---~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam 101 (177)
T PLN02931 29 EERTLAMIKPDGLS----G---NYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVM 101 (177)
T ss_pred ceeEEEEECchhhh----c---ccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEE
Confidence 57899999999985 1 45799999999966666 346999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCcee
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVI 223 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~ 223 (235)
+|+|+|||+.||++|||+||..| +|+|||++||.+.++|+|||||++++|++||++||+.....
T Consensus 102 ~L~g~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~~~~ 168 (177)
T PLN02931 102 VLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVSSG 168 (177)
T ss_pred EEecCCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCccccc
Confidence 99999999999999999999998 79999999999999999999999999999999999976543
No 14
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=99.98 E-value=1.1e-32 Score=221.70 Aligned_cols=111 Identities=43% Similarity=0.620 Sum_probs=102.3
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|+|+||||++. + .++|+||+.|.+.|+.+ +.+||.+|.+++||. ||||+||+
T Consensus 1 e~Tl~lIKPda~~----~---~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~ 73 (130)
T cd04413 1 ERTLVIIKPDGVQ----R---GLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMV 73 (130)
T ss_pred CeeEEEECchHhh----c---CcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEE
Confidence 5799999999985 1 34799999999866655 457999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhcc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF 217 (235)
|+|+|||++||++|||+||+.|+|+|||+.||.+.++|+|||||++++|.+||+|||
T Consensus 74 l~~~nav~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 74 LEGENAVKTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred EeCCcHHHHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999998
No 15
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=99.97 E-value=2.5e-32 Score=220.75 Aligned_cols=111 Identities=18% Similarity=0.117 Sum_probs=102.0
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCC-Cccc-------CccEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITK-PLNG-------NDINNFE 159 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k-~f~~-------sGpvval 159 (235)
++|+++||||++. + .++|+||+.|.+.|+.+ +.+||.+|.++ +||+ |||++||
T Consensus 1 ~~Tl~lIKPda~~----~---~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val 73 (134)
T cd04412 1 NCTVCIIKPHAVS----H---GLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIAL 73 (134)
T ss_pred CcEEEEECchHhh----c---CchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEE
Confidence 4699999999986 2 45899999999866665 45699999999 8885 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhcc
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF 217 (235)
+|.|+|||++||+++||+||..| +|+|||+.||.+.++|+|||||++++|++|++|||
T Consensus 74 ~l~g~nav~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 74 EIAGENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred EEECCcHHHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 99999999999999999999988 89999999999999999999999999999999998
No 16
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=99.97 E-value=2.9e-32 Score=220.78 Aligned_cols=113 Identities=28% Similarity=0.312 Sum_probs=100.6
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. +. ...+.|++.|.+.|+.+ +.+||.+|.+++||. ||||+||+
T Consensus 1 e~Tl~lIKPda~~----~~--~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~ 74 (135)
T cd04414 1 QLTLALIKPDAVA----HP--LALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALI 74 (135)
T ss_pred CeEEEEECchHHh----CC--chHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEE
Confidence 5799999999986 11 22478888887755555 457999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFT 218 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~ 218 (235)
|+|+|||+.||++|||+||..| .|+|||++||.+.++|+|||||++++|++||+||||
T Consensus 75 l~~~naV~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 75 LAHENAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred EEcCCHHHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 9999999999999999999987 899999999999999999999999999999999997
No 17
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=99.97 E-value=3e-32 Score=219.72 Aligned_cols=110 Identities=25% Similarity=0.333 Sum_probs=102.0
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|+|+||||++. .++|+|++.|.+.|+.+ +.+||.+|.+++||+ |||+++|+
T Consensus 1 e~Tl~iIKPdav~--------~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~ 72 (132)
T cd04416 1 EYTLALIKPDAVA--------EKKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILV 72 (132)
T ss_pred CeEEEEEChHHHH--------HHHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEE
Confidence 5799999999886 35799999999966665 456999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhcc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF 217 (235)
|+|+|||+.||+++||+||..| .|+|||++||.+.++|+|||||++++|++||+|||
T Consensus 73 l~~~~av~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 73 LSKENAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred EeCCCHHHHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 9999999999999999999988 89999999999999999999999999999999998
No 18
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=99.97 E-value=9.3e-32 Score=216.91 Aligned_cols=111 Identities=34% Similarity=0.413 Sum_probs=102.0
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|+++||||++.. +++|+|++.|.+.|+.+ +.+||.+|.+++||. |||+++|+
T Consensus 1 e~tl~iIKPd~~~~-------~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~ 73 (133)
T cd00595 1 ERTLALIKPDAVAE-------GLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMI 73 (133)
T ss_pred CcEEEEECchHHhc-------CcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEE
Confidence 57999999999861 46799999999966666 346999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhcc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF 217 (235)
|+|+|||+.||+++||+||+.| .|+|||++||.+.++|+|||||++++|.+||+|||
T Consensus 74 l~g~~av~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 74 LEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred EecCChHHHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 9999999999999999999966 89999999999999999999999999999999998
No 19
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=99.97 E-value=4.6e-32 Score=218.74 Aligned_cols=116 Identities=31% Similarity=0.416 Sum_probs=99.4
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhhh------------hhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTKN------------IRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~~------------~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|++|||||++.. +++|+|++.|.+.||.+. .+||.++.++++|. ||||++|+
T Consensus 1 E~tl~lIKPda~~~-------~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~ 73 (135)
T PF00334_consen 1 ERTLALIKPDAVAR-------GHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALV 73 (135)
T ss_dssp EEEEEEE-HHHHHT-------T-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEE
T ss_pred CeEEEEEChhHhhc-------cchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEE
Confidence 46999999998862 468999999999877774 46999999999885 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCce
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEV 222 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~ 222 (235)
|+|+|||++||+++||+||+.|+|+|||++||.+..+|+|||||++++|.+|++|||++.++
T Consensus 74 l~g~~av~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~~~ 135 (135)
T PF00334_consen 74 LEGENAVEKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEFEI 135 (135)
T ss_dssp EESTTHHHHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGGGS
T ss_pred eecchhhHHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 20
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=99.97 E-value=7.2e-31 Score=211.93 Aligned_cols=115 Identities=37% Similarity=0.549 Sum_probs=104.9
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+|+++||||++. + .++|+||+.|.+.|+.+ +.+||.+|.+++||. |||+++|+
T Consensus 1 e~tl~iIKPda~~----~---~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~ 73 (135)
T smart00562 1 ERTLAIIKPDAVQ----R---GLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMV 73 (135)
T ss_pred CeEEEEECchhhh----c---ccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEE
Confidence 4799999999985 1 45799999999977666 346999999999986 89999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKE 221 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~ 221 (235)
|+|+|||+.||+++||+||..+.|+|||++||.+.++|+|||||++++|.+|+++||+..+
T Consensus 74 l~g~nav~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~~ 134 (135)
T smart00562 74 LEGEDAVKTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPESE 134 (135)
T ss_pred EecCCHHHHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCccc
Confidence 9999999999999999999888999999999999999999999999999999999998765
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=99.97 E-value=9.7e-31 Score=221.16 Aligned_cols=119 Identities=29% Similarity=0.448 Sum_probs=105.0
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhhh------------hhhhhc----------------------
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTKN------------IRLNLQ---------------------- 144 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~~------------~~~y~~---------------------- 144 (235)
.|+||++||||++. + .++|+||+.|.+.|+++. .+||.+
T Consensus 3 ~E~TlviIKPdav~----~---~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~ 75 (183)
T PRK14544 3 IERTLVILKPDAVK----R---GLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGID 75 (183)
T ss_pred cceEEEEECchhhh----c---ccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhcccc
Confidence 37899999999985 1 457999999999666663 458874
Q ss_pred -----------ccCCCccc-------CccEEEEEEecccHHHHHHHHhCCCCCCCCCCCCccccccccc----------C
Q psy10009 145 -----------NITKPLNG-------NDINNFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQV----------G 196 (235)
Q Consensus 145 -----------~~~k~f~~-------sGpvval~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~----------~ 196 (235)
+.+++||. ||||+||+|.|+|||++||+||||++|..|.|+|||++||.+. +
T Consensus 76 ~~~~~~~~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~ 155 (183)
T PRK14544 76 PRARLGTDDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVV 155 (183)
T ss_pred cccccccccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccce
Confidence 46788885 9999999999999999999999999999999999999999884 8
Q ss_pred eeEEEcCCCHHHHHHHhhhccCCCceec
Q psy10009 197 RNIMHGSDSVESAKKEIALWFTEKEVIG 224 (235)
Q Consensus 197 ~N~vHgSds~e~a~~ei~~fF~~~~~~~ 224 (235)
+|+||||||+++|++||+|||++.++.+
T Consensus 156 ~NavH~Sds~e~A~rEi~~fF~~~~~~~ 183 (183)
T PRK14544 156 YNLVHASDSPEEAEREIKFWFREEEILD 183 (183)
T ss_pred eeEEECCCCHHHHHHHHHHhCChhhccC
Confidence 9999999999999999999999887753
No 22
>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.
Probab=99.50 E-value=6.9e-14 Score=96.91 Aligned_cols=60 Identities=30% Similarity=0.614 Sum_probs=44.6
Q ss_pred eeeecccCcceEEEcceEeeeeccccCCceEEEeecCCCcceeeEEEee--CCeEEeccCCCCC
Q psy10009 25 KYETAKIVSRKLVYRGYYFRREKETCNKKIMWKCTSYSRTKCHSRIHTF--DGHIIFNSDKHNH 86 (235)
Q Consensus 25 ~~~s~rgg~~~L~y~g~~y~r~k~~k~~k~yWrC~~~~~~kC~aRv~T~--~~~iv~~~~~HnH 86 (235)
|+.|++| +++|+|+||.|..++.. ++++||+|+.+.+.+|+|+|+|. ++.++.....|||
T Consensus 1 f~~s~~g-~~~L~~~Gy~y~~~~~~-~~~~~WrC~~~~~~~C~a~~~~~~~~~~~~~~~~~HnH 62 (62)
T PF04500_consen 1 FIKSRRG-RPKLVYDGYRYYFNKRN-DGKTYWRCSRRRSHGCRARLITDAGDGRVVRTNGEHNH 62 (62)
T ss_dssp EEEETTT-EEEEEETTEEEEEEEE--SS-EEEEEGGGTTS----EEEEE--TTEEEE-S---SS
T ss_pred CeECCCC-CEEEEECCeEEECcCCC-CCcEEEEeCCCCCCCCeEEEEEECCCCEEEECCCccCC
Confidence 5678888 99999999999999998 99999999999889999999998 5667655678998
No 23
>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif. The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.
Probab=85.23 E-value=2 Score=30.02 Aligned_cols=46 Identities=24% Similarity=0.485 Sum_probs=26.3
Q ss_pred cceEeeeeccc-----cCCceEEEeecCCCcceeeEEEee----CCeE--EeccCCCCCC
Q psy10009 39 RGYYFRREKET-----CNKKIMWKCTSYSRTKCHSRIHTF----DGHI--IFNSDKHNHL 87 (235)
Q Consensus 39 ~g~~y~r~k~~-----k~~k~yWrC~~~~~~kC~aRv~T~----~~~i--v~~~~~HnH~ 87 (235)
|||..++-.+. +..+.|-||+.. .|+|+-... +..+ +.+..+|||+
T Consensus 3 Dgy~WRKYGqK~i~g~~~pRsYYrCt~~---~C~akK~Vqr~~~d~~~~~vtY~G~H~h~ 59 (60)
T PF03106_consen 3 DGYRWRKYGQKNIKGSPYPRSYYRCTHP---GCPAKKQVQRSADDPNIVIVTYEGEHNHP 59 (60)
T ss_dssp SSS-EEEEEEEEETTTTCEEEEEEEECT---TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred CCCchhhccCcccCCCceeeEeeecccc---ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence 45555554322 345889999986 799865442 2223 4678899996
No 24
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=63.69 E-value=7.7 Score=27.14 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=22.0
Q ss_pred CCceEEEeecCCCcceeeEEE-ee---CCeE--EeccCCCCC
Q psy10009 51 NKKIMWKCTSYSRTKCHSRIH-TF---DGHI--IFNSDKHNH 86 (235)
Q Consensus 51 ~~k~yWrC~~~~~~kC~aRv~-T~---~~~i--v~~~~~HnH 86 (235)
.-+.|-||+. ...|.|+-. .. +..+ +.+..+|||
T Consensus 20 ~pRsYYrCt~--~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h 59 (59)
T smart00774 20 FPRSYYRCTY--SQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59 (59)
T ss_pred CcceEEeccc--cCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence 4588999988 456887532 22 2222 457778998
No 25
>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants. It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.
Probab=49.37 E-value=46 Score=24.00 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=17.4
Q ss_pred cceeeEEEee---CCe--EEeccCCCCCCc
Q psy10009 64 TKCHSRIHTF---DGH--IIFNSDKHNHLP 88 (235)
Q Consensus 64 ~kC~aRv~T~---~~~--iv~~~~~HnH~P 88 (235)
..|+|++... ++. |.....+|||+.
T Consensus 60 tgC~a~i~v~~~~~~~w~v~~~~~~HNH~L 89 (91)
T PF03101_consen 60 TGCKARINVKRRKDGKWRVTSFVLEHNHPL 89 (91)
T ss_pred cCCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence 5699988775 343 344567899984
No 26
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=48.31 E-value=22 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.536 Sum_probs=17.1
Q ss_pred EeeeeccccCCceEEEeecCCCc--ceeeE
Q psy10009 42 YFRREKETCNKKIMWKCTSYSRT--KCHSR 69 (235)
Q Consensus 42 ~y~r~k~~k~~k~yWrC~~~~~~--kC~aR 69 (235)
.+...+.. +++.||+|..+... +|..+
T Consensus 14 ~m~~~~~~-~~~~yy~C~~~~~~~~~C~~~ 42 (58)
T PF13408_consen 14 KMTRRKRK-GKYRYYRCSNRRRKGKGCPNK 42 (58)
T ss_pred EeEEEECC-CCceEEEcCCCcCCCCCCCCC
Confidence 33334443 66799999877543 48865
No 27
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=22.91 E-value=47 Score=27.36 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=15.9
Q ss_pred cCCCccc-CccEEEEEEeccc
Q psy10009 146 ITKPLNG-NDINNFEVWEGLN 165 (235)
Q Consensus 146 ~~k~f~~-sGpvval~l~g~n 165 (235)
.++|+++ +|-|||++|-|.|
T Consensus 108 SGRpi~DNsGrVVaIVLGG~n 128 (158)
T PF00944_consen 108 SGRPIFDNSGRVVAIVLGGAN 128 (158)
T ss_dssp TTEEEESTTSBEEEEEEEEEE
T ss_pred CCCccCcCCCCEEEEEecCCC
Confidence 4566665 8999999998865
No 28
>PF06839 zf-GRF: GRF zinc finger; InterPro: IPR010666 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This presumed zinc-binding domain is found in a variety of DNA-binding proteins. It seems likely that this domain is involved in nucleic acid binding. It is named GRF after three conserved residues in the centre of the alignment of the domain. This zinc finger may be related to IPR000380 from INTERPRO. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=21.43 E-value=56 Score=21.01 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=14.6
Q ss_pred ccccCCceEEEeecCCCccee
Q psy10009 47 KETCNKKIMWKCTSYSRTKCH 67 (235)
Q Consensus 47 k~~k~~k~yWrC~~~~~~kC~ 67 (235)
..+ .+|.||+|..+...+|.
T Consensus 18 ~~N-~GR~Fy~C~~~~~~~C~ 37 (45)
T PF06839_consen 18 GPN-PGRRFYKCPNYKDKGCN 37 (45)
T ss_pred CCC-CCCcceECCCCCCCCcC
Confidence 344 67999999987655564
Done!