Query psy10009
Match_columns 235
No_of_seqs 238 out of 1226
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 15:33:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fkx_A NDK B, nucleoside dipho 100.0 1.8E-42 6.2E-47 286.3 5.7 130 99-235 11-159 (161)
2 3l7u_A Nucleoside diphosphate 100.0 1.9E-41 6.4E-46 282.8 5.7 130 99-235 24-172 (172)
3 3q8u_A Nucleoside diphosphate 100.0 2.8E-41 9.6E-46 278.4 6.2 129 100-235 2-149 (157)
4 3r9l_A Nucleoside diphosphate 100.0 3.5E-41 1.2E-45 277.3 5.8 130 99-235 7-155 (155)
5 1xiq_A Nucleoside diphosphate 100.0 1.3E-40 4.4E-45 274.5 7.7 129 100-235 10-157 (157)
6 1nb2_A Nucleoside diphosphate 100.0 1.8E-40 6.3E-45 271.9 7.4 129 100-235 3-150 (150)
7 3b54_A NDK, NDP kinase, nucleo 100.0 7.9E-41 2.7E-45 276.8 5.1 130 99-235 13-161 (161)
8 3fkb_A NDP kinase, NDK, nucleo 100.0 1.9E-40 6.6E-45 272.9 6.8 129 99-235 8-155 (155)
9 3bbb_A Nucleoside diphosphate 100.0 3E-40 1E-44 270.9 5.5 130 99-235 3-151 (151)
10 2vu5_A Nucleoside diphosphate 100.0 4.8E-40 1.7E-44 268.9 6.4 128 100-234 2-148 (148)
11 3mpd_A Nucleoside diphosphate 100.0 4.8E-40 1.6E-44 269.6 6.3 127 99-234 5-151 (151)
12 1s57_A Nucleoside diphosphate 100.0 5.5E-40 1.9E-44 269.9 6.2 130 99-235 5-153 (153)
13 1w7w_A Nucleoside diphosphate 100.0 4.3E-40 1.5E-44 277.0 5.5 132 97-235 30-180 (182)
14 1u8w_A Nucleoside diphosphate 100.0 9.5E-40 3.2E-44 267.4 7.2 128 100-235 2-148 (149)
15 3js9_A Nucleoside diphosphate 100.0 4.9E-40 1.7E-44 270.7 5.2 128 100-234 10-156 (156)
16 1pku_A Nucleoside diphosphate 100.0 6.4E-40 2.2E-44 268.7 5.5 128 100-235 3-149 (150)
17 2az3_A Nucleoside diphosphate 100.0 1.7E-39 5.7E-44 269.6 5.3 133 96-235 5-158 (164)
18 1zs6_A Nucleoside diphosphate 100.0 1.5E-39 5.1E-44 271.0 5.0 130 99-235 21-169 (169)
19 2dxe_A Nucleoside diphosphate 100.0 1.5E-39 5.1E-44 269.0 4.6 128 100-235 8-157 (160)
20 4hr2_A Nucleoside diphosphate 100.0 2.2E-38 7.5E-43 258.0 5.9 118 100-224 8-144 (145)
21 4dz6_A Nucleoside diphosphate 100.0 5.6E-39 1.9E-43 271.6 2.2 130 99-235 26-189 (190)
22 2hur_A NDK, nucleoside diphosp 100.0 7.1E-38 2.4E-42 254.4 6.2 121 100-227 3-142 (142)
23 1nhk_R Nucleoside diphosphate 100.0 8.3E-38 2.9E-42 254.5 5.1 121 100-227 3-142 (144)
24 1ehw_A NDPK H4, nucleoside dip 100.0 1.4E-37 4.7E-42 257.5 5.9 120 99-225 24-162 (162)
25 3evo_A NDP kinase, NDK, nucleo 100.0 4.9E-37 1.7E-41 250.4 6.1 118 99-223 6-143 (146)
26 1wkj_A Nucleoside diphosphate 100.0 7.4E-37 2.5E-41 247.1 6.6 117 100-223 2-137 (137)
27 3ztp_A Nucleoside diphosphate 100.0 3.1E-37 1.1E-41 250.6 2.7 117 100-223 4-142 (142)
28 1k44_A Nucleoside diphosphate 100.0 7E-36 2.4E-40 241.1 6.2 113 100-219 3-135 (136)
29 1xqi_A Nucleoside diphosphate 100.0 6.9E-33 2.3E-37 235.6 2.3 119 99-224 15-195 (195)
30 3bh7_B Protein XRP2; protein-p 99.8 8.1E-22 2.8E-26 180.7 4.8 100 98-221 234-347 (352)
31 2rpr_A Flywch-type zinc finger 99.7 3.8E-17 1.3E-21 121.6 6.7 69 22-93 10-78 (87)
32 1wj2_A Probable WRKY transcrip 84.0 1.5 5E-05 31.4 4.5 50 36-88 16-76 (78)
33 2ayd_A WRKY transcription fact 81.4 2.4 8.3E-05 30.1 4.8 51 35-88 12-73 (76)
34 4agk_A Capsid protein, coat pr 32.7 19 0.00066 28.3 1.8 20 146-165 109-129 (158)
35 1vq3_A Phosphoribosylformylgly 27.1 90 0.0031 22.6 4.6 67 82-174 8-77 (94)
No 1
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=1.8e-42 Score=286.29 Aligned_cols=130 Identities=45% Similarity=0.709 Sum_probs=122.4
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
+++||++||||++.- .++|+||+.|.+.|+++ +.+||.+|+++|||+ |||||||
T Consensus 11 ~~rTl~iIKPDav~~-------~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvam 83 (161)
T 4fkx_A 11 SERTFIAVKPDGVQR-------NLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGM 83 (161)
T ss_dssp TCEEEEEECHHHHHT-------TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEE
T ss_pred cccEEEEECHHHhcc-------CcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEE
Confidence 478999999999872 46899999999866666 456999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.+.||||
T Consensus 84 vleg~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 159 (161)
T 4fkx_A 84 VWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWTSHSVKQIYE 159 (161)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCS
T ss_pred EEeccChHHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccchhheec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=282.78 Aligned_cols=130 Identities=47% Similarity=0.773 Sum_probs=122.4
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++.- .++|+||+.|.+.|+++ +.+||.+|+++|||+ |||||||
T Consensus 24 ~ErTl~iIKPDav~r-------~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvam 96 (172)
T 3l7u_A 24 CERTFIAIKPDGVQR-------GLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAM 96 (172)
T ss_dssp GCEEEEEECHHHHHT-------TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEE
T ss_pred hceEEEEEChHHHhc-------ccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEE
Confidence 578999999999872 46899999999977766 346999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||+|||++.++++|..+.+.||||
T Consensus 97 vleg~naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 172 (172)
T 3l7u_A 97 VWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172 (172)
T ss_dssp EEESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred EEeCCCHHHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhccccccchhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=2.8e-41 Score=278.36 Aligned_cols=129 Identities=33% Similarity=0.596 Sum_probs=121.6
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++.- .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||+
T Consensus 2 ErTl~iIKPDav~~-------~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamv 74 (157)
T 3q8u_A 2 ERTFLMIKPDAVQR-------NLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMV 74 (157)
T ss_dssp CEEEEEECHHHHHT-------TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred ceEEEEEChHHhhc-------CCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEE
Confidence 68999999999871 46899999999977766 346999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.+.|+||
T Consensus 75 leg~naV~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 149 (157)
T 3q8u_A 75 VEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149 (157)
T ss_dssp EESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred EeCCCHHHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 4
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=3.5e-41 Score=277.35 Aligned_cols=130 Identities=37% Similarity=0.635 Sum_probs=97.9
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhhh------------hhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTKN------------IRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~~------------~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++.- .++|+||+.|.+.|+++. .+||.+|+++|||+ |||||||
T Consensus 7 ~ErTl~iIKPdav~~-------~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvam 79 (155)
T 3r9l_A 7 RERTFLMVKPDGVQR-------GLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAM 79 (155)
T ss_dssp SCEEEEEECHHHHHT-------TCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEE
T ss_pred hheEEEEEChHHhhc-------CcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEE
Confidence 378999999998871 468999999999777663 46999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.+.||||
T Consensus 80 vleg~naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 155 (155)
T 3r9l_A 80 VWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE 155 (155)
T ss_dssp EEESTTHHHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTCC------------
T ss_pred EEeCCCHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhccccccchhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 5
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=1.3e-40 Score=274.49 Aligned_cols=129 Identities=34% Similarity=0.626 Sum_probs=121.7
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ ||||+||+
T Consensus 10 ~~Tl~iIKPDav~----r---~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamv 82 (157)
T 1xiq_A 10 EKSFIMIKPDGVQ----R---GLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMV 82 (157)
T ss_dssp CEEEEEECHHHHH----T---TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEE
T ss_pred heEEEEEChHHHh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEE
Confidence 7899999999987 2 56899999999976665 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.+.|+||
T Consensus 83 leg~naV~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 157 (157)
T 1xiq_A 83 WEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQWKHHMKEWICS 157 (157)
T ss_dssp EESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTCC
T ss_pred EecccchHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 6
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=1.8e-40 Score=271.87 Aligned_cols=129 Identities=36% Similarity=0.500 Sum_probs=121.5
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||+
T Consensus 3 erTl~iIKPdav~----~---~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~v 75 (150)
T 1nb2_A 3 ERTFLMVKPDGVQ----R---NLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMV 75 (150)
T ss_dssp CCEEEEECHHHHH----T---TCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEE
T ss_pred eEEEEEEChhHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEE
Confidence 7899999999986 2 56899999999976665 456999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.++|+||
T Consensus 76 l~g~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 150 (150)
T 1nb2_A 76 WEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASGTPAAAADIYG 150 (150)
T ss_dssp EESTTHHHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCCCCTTGGGTCC
T ss_pred EecCCHHHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
No 7
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-41 Score=276.79 Aligned_cols=130 Identities=39% Similarity=0.696 Sum_probs=115.1
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++.- .++|+|++.|.+.|+++ +.+||.+|.++|||+ |||||||
T Consensus 13 ~erTl~iIKPDav~~-------~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvam 85 (161)
T 3b54_A 13 TERTFIAVKPDGVQR-------GLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILAT 85 (161)
T ss_dssp CCEEEEEECHHHHHH-------TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEE
T ss_pred cceEEEEEChHHHhc-------ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEE
Confidence 478999999999871 45899999999976665 456999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||..|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.+.|+||
T Consensus 86 vleg~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 161 (161)
T 3b54_A 86 VWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 161 (161)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTCCCCCCTTHHHHCC
T ss_pred EEeccChHHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhcccccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 8
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=1.9e-40 Score=272.91 Aligned_cols=129 Identities=36% Similarity=0.556 Sum_probs=120.5
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++.- .++|+||+.|.+.|+++ +.+||.+|+++|||+ |||||||
T Consensus 8 ~ErTl~iIKPDav~~-------~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvam 80 (155)
T 3fkb_A 8 KERTFLAVKPDGVAR-------GLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAM 80 (155)
T ss_dssp TCEEEEEECHHHHHT-------TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEE
T ss_pred cceEEEEEChhHhhc-------CcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEE
Confidence 478999999999872 46899999999977666 346999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+. .|+||
T Consensus 81 vleg~naV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~-~~~~~ 155 (155)
T 3fkb_A 81 VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPN-PNLYE 155 (155)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCSCCCCC-TTSCC
T ss_pred EEeCCCHHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccc-hhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 59997
No 9
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=3e-40 Score=270.91 Aligned_cols=130 Identities=45% Similarity=0.753 Sum_probs=121.8
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++. + .++|+|++.|.+.|+++ +.++|.+|.++|||. |||||||
T Consensus 3 ~erTl~iIKPdav~----~---~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvam 75 (151)
T 3bbb_A 3 LERTFIAIKPDGVQ----R---GLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAM 75 (151)
T ss_dssp TCEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEE
T ss_pred cceEEEEEChhHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEE
Confidence 37899999999887 2 56899999999977665 356999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||..|.|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.+.|+||
T Consensus 76 vleg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 151 (151)
T 3bbb_A 76 VWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151 (151)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred EEecCCHHHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhcccccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 10
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=4.8e-40 Score=268.87 Aligned_cols=128 Identities=34% Similarity=0.603 Sum_probs=120.4
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||+
T Consensus 2 ErTl~iIKPdav~----~---~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~v 74 (148)
T 2vu5_A 2 EKTFLMVKPDGVQ----R---AFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMV 74 (148)
T ss_dssp CEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEEChHHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEE
Confidence 6899999999986 2 56899999999976665 456999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCccc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIY 234 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~ 234 (235)
|+|+|||+.||+|||||||..|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.++|+|
T Consensus 75 leg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 148 (148)
T 2vu5_A 75 WQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148 (148)
T ss_dssp EESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTC
T ss_pred EeccChHHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=4.8e-40 Score=269.57 Aligned_cols=127 Identities=31% Similarity=0.538 Sum_probs=118.6
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++.- .++|+||+.|.+.|+++ +.+||.+|+++|||+ |||||||
T Consensus 5 ~erTl~iIKPdav~~-------~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvam 77 (151)
T 3mpd_A 5 MERTFIMIKPDAIKR-------RLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAM 77 (151)
T ss_dssp CCEEEEEECHHHHHT-------TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEE
T ss_pred eEEEEEEEChhHhhc-------CcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEE
Confidence 478999999998872 46899999999866666 346999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccC-CCceeccccCCcCccc
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFT-EKEVIGWTNASESWIY 234 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~-~~~~~~~~~~~~~~~~ 234 (235)
+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||+ +.++++| +.+.|||
T Consensus 78 vleg~naV~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~~~~--~~~~~~~ 151 (151)
T 3mpd_A 78 VWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSF--FDKEWIY 151 (151)
T ss_dssp EEESTTHHHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCCCCC--TTHHHHC
T ss_pred EEeCCcHHHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchheee--ccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999 8899998
No 12
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=5.5e-40 Score=269.86 Aligned_cols=130 Identities=33% Similarity=0.582 Sum_probs=121.9
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|.++|||+ ||||+||
T Consensus 5 ~erTl~iIKPDav~----~---~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvam 77 (153)
T 1s57_A 5 VEETYIMVKPDGIQ----R---GLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCM 77 (153)
T ss_dssp CEEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEE
T ss_pred cceEEEEEChhHhh----c---ccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEE
Confidence 37899999999987 2 56899999999977666 446999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|||||||..|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.++|+||
T Consensus 78 vleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 153 (153)
T 1s57_A 78 AWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 153 (153)
T ss_dssp EEEETTHHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCCCCTTHHHHCC
T ss_pred EEecccHHHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhcccccccchhhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 13
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=4.3e-40 Score=277.01 Aligned_cols=132 Identities=36% Similarity=0.618 Sum_probs=123.0
Q ss_pred CCCCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEE
Q psy10009 97 PSSEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINN 157 (235)
Q Consensus 97 ~~~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvv 157 (235)
...|+||++||||++. + .++|+||+.|.+.|+++ +.+||.+|+++|||+ |||||
T Consensus 30 ~~~erTl~iIKPDav~----r---~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvv 102 (182)
T 1w7w_A 30 AELERTFIAIKPDGVQ----R---GLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVI 102 (182)
T ss_dssp CTTCEEEEEECHHHHH----T---TCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEE
T ss_pred chhceEEEEEChHHhh----c---CcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEE
Confidence 4458899999999986 2 56899999999976666 456999999999996 99999
Q ss_pred EEEEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 158 FEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 158 al~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
||+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|+.+.++|+||
T Consensus 103 amvleG~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 180 (182)
T 1w7w_A 103 AMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTSNSEKWIYG 180 (182)
T ss_dssp EEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCCCCCTTHHHHTC
T ss_pred EEEEecccHHHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhccccccccccceec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
No 14
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=9.5e-40 Score=267.39 Aligned_cols=128 Identities=39% Similarity=0.681 Sum_probs=119.6
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|.++|||+ ||||+||+
T Consensus 2 e~Tl~iIKPdav~----~---~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~v 74 (149)
T 1u8w_A 2 EQTFIMIKPDGVQ----R---GLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMI 74 (149)
T ss_dssp CEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEE
T ss_pred eeEEEEECchHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEE
Confidence 6899999999987 2 56899999999976665 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
|+|+|||+.||+|||||||..|+|+|||++||.+..+|+||||||+|+|++||++|| +.++++|..+.+.|+||
T Consensus 75 leg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 148 (149)
T 1u8w_A 75 WEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWF-PDGPVNWQSSVHPWVYE 148 (149)
T ss_dssp EESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTGGGTSC
T ss_pred EecCCchHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhC-chhhccccccchhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 67899999999999997
No 15
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=4.9e-40 Score=270.69 Aligned_cols=128 Identities=31% Similarity=0.543 Sum_probs=120.7
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
++|+++||||++.- .++|+|++.|.+.|+++ +.+||.+|.++|||+ |||||||+
T Consensus 10 ~~~~~iIKPDaV~r-------~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamv 82 (156)
T 3js9_A 10 ERTYIMVKPDGVQR-------GLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMI 82 (156)
T ss_dssp EEEEEEECHHHHHT-------TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEE
T ss_pred hcceEEEChHHHhc-------ccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEE
Confidence 57999999999872 56899999999966666 346999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCccc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIY 234 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~ 234 (235)
|+|+|||+.||+|+|||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|+.+.+.|||
T Consensus 83 leg~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~~ 156 (156)
T 3js9_A 83 WEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWERSVGGWIY 156 (156)
T ss_dssp EEETTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGCCCCCCTTGGGTC
T ss_pred EeccchHHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhcccccccchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 16
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=6.4e-40 Score=268.67 Aligned_cols=128 Identities=36% Similarity=0.640 Sum_probs=119.8
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||. |||||||+
T Consensus 3 erTl~iIKPdav~----~---~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~v 75 (150)
T 1pku_A 3 EQSFIMIKPDGVQ----R---GLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMV 75 (150)
T ss_dssp CEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEE
T ss_pred eEEEEEEChhHhc----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEE
Confidence 7899999999886 2 56899999999976666 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
|+|+|||+.||+|||||||..|+|+|||++||.+..+|+||||||+|+|++||++|| +.++++|..+.+.|+||
T Consensus 76 leg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 149 (150)
T 1pku_A 76 WEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGLAEWRSNLHPWIYE 149 (150)
T ss_dssp EESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTHHHHCC
T ss_pred EeccchHHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhC-cHHhccccccchhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 67899999999999997
No 17
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=1.7e-39 Score=269.58 Aligned_cols=133 Identities=29% Similarity=0.539 Sum_probs=122.6
Q ss_pred CCCCCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccE
Q psy10009 96 HPSSEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDIN 156 (235)
Q Consensus 96 ~~~~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpv 156 (235)
....|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|.++|||+ ||||
T Consensus 5 ~~~~e~Tl~iIKPDav~----~---~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPv 77 (164)
T 2az3_A 5 TDHDERTFVMVKPDGVQ----R---GLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPV 77 (164)
T ss_dssp --CCCEEEEEECHHHHH----T---TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCE
T ss_pred cCccceEEEEEChhHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCE
Confidence 34458899999999987 2 56899999999976665 456999999999996 9999
Q ss_pred EEEEEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHH--HHHHHhhhccCCCceeccccCCcCccc
Q psy10009 157 NFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVE--SAKKEIALWFTEKEVIGWTNASESWIY 234 (235)
Q Consensus 157 val~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e--~a~~ei~~fF~~~~~~~~~~~~~~~~~ 234 (235)
|||+|+|+|||+.||+|||||||..|+|+|||++||.+..+|+||||||+| +|++||++||++.++++|..+.++|+|
T Consensus 78 vamvleg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~~~~~~~~~~~~~ 157 (164)
T 2az3_A 78 FAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVY 157 (164)
T ss_dssp EEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCCCTTHHHHC
T ss_pred EEEEEccccHHHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhhcccccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred C
Q psy10009 235 E 235 (235)
Q Consensus 235 ~ 235 (235)
|
T Consensus 158 ~ 158 (164)
T 2az3_A 158 E 158 (164)
T ss_dssp C
T ss_pred h
Confidence 7
No 18
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.5e-39 Score=271.04 Aligned_cols=130 Identities=38% Similarity=0.763 Sum_probs=122.2
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ ||||+||
T Consensus 21 ~erTl~iIKPDav~----~---~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvam 93 (169)
T 1zs6_A 21 HERTFLAVKPDGVQ----R---RLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAM 93 (169)
T ss_dssp GCEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEE
T ss_pred hccEEEEEChhhhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEE
Confidence 47899999999987 2 56899999999976665 456999999999996 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
+|+|+|||+.||+|+|||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|..+.+.|+||
T Consensus 94 vleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 169 (169)
T 1zs6_A 94 VWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169 (169)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCCCCCTTHHHHCC
T ss_pred EEecCCchHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhhhcccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997
No 19
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=1.5e-39 Score=268.99 Aligned_cols=128 Identities=33% Similarity=0.502 Sum_probs=120.2
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||+
T Consensus 8 erTl~iIKPDav~----~---~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamv 80 (160)
T 2dxe_A 8 ERTLVIIKPDAVV----R---GLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMV 80 (160)
T ss_dssp EEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred CeEEEEEChHHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEE
Confidence 7899999999986 2 55899999999966666 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCe---eEEEcCCCHHHHHHHhhhccCCCceeccccCCcCcccC
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGR---NIMHGSDSVESAKKEIALWFTEKEVIGWTNASESWIYE 235 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~---N~vHgSds~e~a~~ei~~fF~~~~~~~~~~~~~~~~~~ 235 (235)
|+|+|||+.||+|+|||||.+|+|+|||++||.+..+ |+||||||+|+|++||++||++.++++| .+.++|+||
T Consensus 81 leg~~aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~-~~~~~~~~~ 157 (160)
T 2dxe_A 81 LEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEY-PRAADWFYK 157 (160)
T ss_dssp EEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCC-CCTTHHHHC
T ss_pred EeccCHHHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhhccc-cchhhhHhc
Confidence 9999999999999999999999999999999999999 9999999999999999999999999999 999999997
No 20
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=2.2e-38 Score=257.99 Aligned_cols=118 Identities=26% Similarity=0.416 Sum_probs=109.7
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|.++|||. |||||||+
T Consensus 8 ErTl~iIKPDav~----~---~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~v 80 (145)
T 4hr2_A 8 ERTLSIIKPDAVA----K---NVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQV 80 (145)
T ss_dssp EEEEEEECHHHHH----T---TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred HHeEEEEChHHhh----c---CCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEE
Confidence 6899999999887 2 56899999999977766 346999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceec
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIG 224 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~ 224 (235)
|+|+|||+.||+|||||||.+|.|+|||++||.+..+|+||||||+|+|++||+|||++.++++
T Consensus 81 leg~~aV~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~ei~~ 144 (145)
T 4hr2_A 81 LEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYS 144 (145)
T ss_dssp EEEETHHHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGGCCC
T ss_pred EEcCCcHhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999988764
No 21
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=5.6e-39 Score=271.63 Aligned_cols=130 Identities=23% Similarity=0.367 Sum_probs=121.5
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhh-----cccCCCccc-------Cc
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNL-----QNITKPLNG-------ND 154 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~-----~~~~k~f~~-------sG 154 (235)
.|+||++||||++.- .++|+||+.|.+.|+++ +.+||. +|++++||+ ||
T Consensus 26 ~ErTl~iIKPDav~r-------~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSG 98 (190)
T 4dz6_A 26 LQKTLCIVKPDGVRR-------GLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNS 98 (190)
T ss_dssp EEEEEEEECHHHHHT-------TCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTS
T ss_pred hhcEEEEEChHHHhc-------CcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCC
Confidence 467999999999871 56899999999977766 346999 999999996 99
Q ss_pred cEEEEEEecccHHHHHHHHhCCCCCCCCCCCCccccccccc----------CeeEEEcCCCHHHHHHHhhhccCCCceec
Q psy10009 155 INNFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQV----------GRNIMHGSDSVESAKKEIALWFTEKEVIG 224 (235)
Q Consensus 155 pvval~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~----------~~N~vHgSds~e~a~~ei~~fF~~~~~~~ 224 (235)
|||||+|+|+|||+.||+|||||||.+|+|+|||++||.+. .+|+||||||+|+|++||+|||++.++++
T Consensus 99 PvvamvleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~ 178 (190)
T 4dz6_A 99 PVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEILN 178 (190)
T ss_dssp EEEEEEEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCC
T ss_pred CEEEEEEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHhcc
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred cccCCcCcccC
Q psy10009 225 WTNASESWIYE 235 (235)
Q Consensus 225 ~~~~~~~~~~~ 235 (235)
|..+.+.|+|.
T Consensus 179 ~~~~~~~~~y~ 189 (190)
T 4dz6_A 179 YKRDDECEHYY 189 (190)
T ss_dssp CCCTTHHHHTC
T ss_pred ccccchhheec
Confidence 99999999995
No 22
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=7.1e-38 Score=254.41 Aligned_cols=121 Identities=33% Similarity=0.400 Sum_probs=112.5
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||+
T Consensus 3 erTl~iIKPdav~----~---~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~v 75 (142)
T 2hur_A 3 ERTFSIIKPNAVA----K---NVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSV 75 (142)
T ss_dssp EEEEEEECHHHHH----T---TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred eEEEEEEChHHHh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEE
Confidence 6799999999986 2 45899999999976666 456999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceecccc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTN 227 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~ 227 (235)
|+|+|||+.||+|+|||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|++
T Consensus 76 l~g~~aV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (142)
T 2hur_A 76 LEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR 142 (142)
T ss_dssp EEEETHHHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCSCCCCC
T ss_pred EecccHHHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999964
No 23
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=8.3e-38 Score=254.53 Aligned_cols=121 Identities=31% Similarity=0.449 Sum_probs=112.7
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|.++|||+ |||||||+
T Consensus 3 erTl~iIKPdav~----~---~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~v 75 (144)
T 1nhk_R 3 ERTLSIIKPDGLE----K---GVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMV 75 (144)
T ss_dssp EEEEEEECHHHHH----T---TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred eEEEEEEChHHHh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEE
Confidence 6799999999986 2 55899999999966665 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceecccc
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTN 227 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~~~ 227 (235)
|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|+.
T Consensus 76 l~g~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (144)
T 1nhk_R 76 LEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPY 142 (144)
T ss_dssp EEEETHHHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred EeccCHHHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999975
No 24
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.4e-37 Score=257.51 Aligned_cols=120 Identities=33% Similarity=0.623 Sum_probs=111.5
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFE 159 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval 159 (235)
.|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||
T Consensus 24 ~ErTl~iIKPDav~----~---~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvam 96 (162)
T 1ehw_A 24 RERTLVAVKPDGVQ----R---RLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAM 96 (162)
T ss_dssp GCEEEEEECHHHHH----T---TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEE
T ss_pred hceEEEEEChHHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEE
Confidence 37899999999986 2 56899999999976665 456999999999986 9999999
Q ss_pred EEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCceecc
Q psy10009 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGW 225 (235)
Q Consensus 160 ~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~~~ 225 (235)
+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++++|
T Consensus 97 vleg~naV~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 162 (162)
T 1ehw_A 97 VWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSW 162 (162)
T ss_dssp EEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGGCCCC
T ss_pred EEechhHHHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhhcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999887
No 25
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=4.9e-37 Score=250.42 Aligned_cols=118 Identities=30% Similarity=0.391 Sum_probs=104.4
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhch-------------hhhhhhhhcccCCCccc-------CccEEE
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSL-------------TKNIRLNLQNITKPLNG-------NDINNF 158 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~-------------~~~~~~y~~~~~k~f~~-------sGpvva 158 (235)
.|+||++||||++.- .++|+|++.|.+.|+ +.+.+||.+|.+++||+ ||||||
T Consensus 6 ~e~Tl~iIKPdav~~-------~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva 78 (146)
T 3evo_A 6 LQRTLVLIKPDAFER-------SLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIIS 78 (146)
T ss_dssp CEEEEEEECHHHHHT-------TCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEE
T ss_pred ceeEEEEEChHHHhc-------ccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEE
Confidence 378999999999872 458999999998444 44567999999999996 999999
Q ss_pred EEEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCcee
Q psy10009 159 EVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVI 223 (235)
Q Consensus 159 l~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~ 223 (235)
|+|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.++.
T Consensus 79 ~vleg~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 143 (146)
T 3evo_A 79 IVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKME 143 (146)
T ss_dssp EEEEETTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC-----
T ss_pred EEEeCCCHHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999987663
No 26
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=7.4e-37 Score=247.07 Aligned_cols=117 Identities=30% Similarity=0.483 Sum_probs=108.0
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||+
T Consensus 2 erTl~iIKPdav~----~---~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~v 74 (137)
T 1wkj_A 2 ERTFVMIKPDGVR----R---GLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMV 74 (137)
T ss_dssp CEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEE
T ss_pred eeEEEEEChHHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEE
Confidence 6899999999986 2 45899999999966665 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCcee
Q psy10009 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVI 223 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~ 223 (235)
|+|+|||+.||+|||||||.+|+|+|||++||.+..+|+||||||+|+|++||++||++.+++
T Consensus 75 l~g~~aV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 137 (137)
T 1wkj_A 75 LEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEELL 137 (137)
T ss_dssp EESTTHHHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGGCC
T ss_pred EeCCcHHHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChhhcC
Confidence 999999999999999999999999999999999999999999999999999999999988763
No 27
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=3.1e-37 Score=250.62 Aligned_cols=117 Identities=24% Similarity=0.360 Sum_probs=108.2
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++.- .++|+|++.|.+.|+++ +.+||.+|.++|||+ |||||||+
T Consensus 4 e~Tl~iIKPdav~~-------~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~v 76 (142)
T 3ztp_A 4 ERTLIIVKPDAMEK-------GALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAV 76 (142)
T ss_dssp EEEEEEECHHHHHH-------TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEE
T ss_pred ceEEEEEChHHHhc-------ccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEE
Confidence 67999999999872 45799999999977666 456999999999996 99999999
Q ss_pred EecccHHHHHHHHhCCCCCCCC---CCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCcee
Q psy10009 161 WEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVI 223 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~~A---~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~~~ 223 (235)
|+|+|||+.||+|+|||||.+| +|+|||++||.+..+|+||||||+|+|++||++||++.|++
T Consensus 77 l~g~naV~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 142 (142)
T 3ztp_A 77 LEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGLEIV 142 (142)
T ss_dssp EEEETHHHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGGGCC
T ss_pred EeCCCHHHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCccccC
Confidence 9999999999999999999999 99999999999999999999999999999999999988763
No 28
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=7e-36 Score=241.07 Aligned_cols=113 Identities=34% Similarity=0.506 Sum_probs=105.0
Q ss_pred CCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccCCCccc-------CccEEEEE
Q psy10009 100 EPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNITKPLNG-------NDINNFEV 160 (235)
Q Consensus 100 e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~k~f~~-------sGpvval~ 160 (235)
|+||++||||++. + .++|+|++.|.+.|+++ +.+||.+|+++|||+ |||||||+
T Consensus 3 e~Tl~iIKPdav~----~---~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~v 75 (136)
T 1k44_A 3 ERTLVLIKPDGIE----R---QLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAI 75 (136)
T ss_dssp EEEEEEECHHHHH----T---TCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEEChHHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEE
Confidence 6899999999986 2 45899999999966665 456999999999986 99999999
Q ss_pred EecccHHHHHHHHhCCCCCC-CCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCC
Q psy10009 161 WEGLNIVKTGRVMLGATNPA-DSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219 (235)
Q Consensus 161 l~g~nav~~~r~l~Gptdp~-~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~ 219 (235)
|+|+|||+.||+|+|||||. +|+|+|||++||.+..+|+||||||+|+|++||++||++
T Consensus 76 l~g~~aV~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 76 VEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG 135 (136)
T ss_dssp EEETTHHHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred EeCCCHHHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCC
Confidence 99999999999999999999 999999999999999999999999999999999999975
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=99.97 E-value=6.9e-33 Score=235.60 Aligned_cols=119 Identities=30% Similarity=0.473 Sum_probs=108.5
Q ss_pred CCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhhh------------hhhh-------------h----------
Q psy10009 99 SEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTKN------------IRLN-------------L---------- 143 (235)
Q Consensus 99 ~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~~------------~~~y-------------~---------- 143 (235)
.|+||++||||++. . .++|+|++.+.+.|+++. .+|| .
T Consensus 15 ~erTlviIKPDav~----r---~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~ 87 (195)
T 1xqi_A 15 VEKTLLILKPDAVA----R---GLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGID 87 (195)
T ss_dssp CCEEEEEECHHHHH----T---TCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhcEEEEEchhHhh----c---ccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCC
Confidence 47899999999887 2 568999999999776663 4699 7
Q ss_pred ----------cccCCCccc-------CccEEEEEEecccHHHHHHHHhCCCCCCCCCCCCcccccccccCe---------
Q psy10009 144 ----------QNITKPLNG-------NDINNFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGR--------- 197 (235)
Q Consensus 144 ----------~~~~k~f~~-------sGpvval~l~g~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~--------- 197 (235)
+|.+++||. |||||||+|+|+|||+.||+|+|||||.+|+|+|||++||.+..+
T Consensus 88 ~~~~~~~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~ 167 (195)
T 1xqi_A 88 PRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVV 167 (195)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCC
T ss_pred hhhhhccccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhcccccccc
Confidence 889999985 999999999999999999999999999999999999999999999
Q ss_pred -eEEEcCCCHHHHHHHhhhccCCCceec
Q psy10009 198 -NIMHGSDSVESAKKEIALWFTEKEVIG 224 (235)
Q Consensus 198 -N~vHgSds~e~a~~ei~~fF~~~~~~~ 224 (235)
|+||||||+|+|++||++||++.++++
T Consensus 168 ~N~vHgSDS~esA~rEi~~~F~~~e~~~ 195 (195)
T 1xqi_A 168 FNLVHASDSPSEAEREIRFWFREEEVLE 195 (195)
T ss_dssp CCSEEECSSHHHHHHHHHHHCCGGGSCC
T ss_pred ceEEEcCCCHHHHHHHHHHhCChhhccC
Confidence 999999999999999999999988763
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.84 E-value=8.1e-22 Score=180.71 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=85.8
Q ss_pred CCCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhh------------hhhhhhcccC--CCcccCccEEEEEEec
Q psy10009 98 SSEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTK------------NIRLNLQNIT--KPLNGNDINNFEVWEG 163 (235)
Q Consensus 98 ~~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~------------~~~~y~~~~~--k~f~~sGpvval~l~g 163 (235)
..|+||++||||++. ..++|+|++.|.+.|+++ +.+||.+|.. -.|+.|||||||+|+|
T Consensus 234 ~~erTl~iiKPd~v~-------r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~~~Lv~~mtsGPvva~vleG 306 (352)
T 3bh7_B 234 SDESCLVVLFAGDYT-------IANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIALEFNG 306 (352)
T ss_dssp CCCEEEEEECCSTTH-------HHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGGGGTGGGGGGSCEEEEEEES
T ss_pred cccceEEEEcchHhh-------hcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHHHHHHHHhccCCEEEEEEEC
Confidence 347799999999987 156899999999866555 4569999974 3456799999999999
Q ss_pred ccHHHHHHHHhCCCCCCCCCCCCcccccccccCeeEEEcCCCHHHHHHHhhhccCCCc
Q psy10009 164 LNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKE 221 (235)
Q Consensus 164 ~nav~~~r~l~Gptdp~~A~P~siRa~fg~~~~~N~vHgSds~e~a~~ei~~fF~~~~ 221 (235)
+|||+.||+|||+|+| .|+||||||+|+|++||++||+..+
T Consensus 307 ~~av~~~R~l~g~t~p-----------------gN~vHgSds~esA~~Ei~~fF~~~~ 347 (352)
T 3bh7_B 307 DGAVEVCQLIVNEIFN-----------------GTKMFVSESKETASGDVDSFYNFAD 347 (352)
T ss_dssp TTHHHHHHHHHHHHCT-----------------TSCEEECSCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCC-----------------CceEEecCCHHHHHHHHHHhcCccc
Confidence 9999999999999995 2999999999999999999997654
No 31
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=3.8e-17 Score=121.57 Aligned_cols=69 Identities=29% Similarity=0.455 Sum_probs=59.7
Q ss_pred ccceeeecccCcceEEEcceEeeeeccccCCceEEEeecCCCcceeeEEEeeCCeEEeccCCCCCCcccccc
Q psy10009 22 DLSKYETAKIVSRKLVYRGYYFRREKETCNKKIMWKCTSYSRTKCHSRIHTFDGHIIFNSDKHNHLPHTMES 93 (235)
Q Consensus 22 ~~~~~~s~rgg~~~L~y~g~~y~r~k~~k~~k~yWrC~~~~~~kC~aRv~T~~~~iv~~~~~HnH~P~~te~ 93 (235)
++.|..|+|| +++|+|+||.|++++.. ++++||+|+++.+.+|+||++|..+.++ ....|||+|.....
T Consensus 10 ~~~fv~s~rG-~~~Lv~~Gy~Y~~~~~~-~~~~yWrC~~~~~~kCrARi~T~~~~~~-~~~~HnH~p~~~~~ 78 (87)
T 2rpr_A 10 PLEFLRTSLG-GRFLVHESFLYRKEKAA-GEKVYWMCRDQARLGCRSRAITQGHRIM-VMRSHCHQPDLAGL 78 (87)
T ss_dssp CCEEEEETTT-EEEEEETTEEEEEEEEC-SSCEEEEEGGGTTSCCCCEEEEETTEEE-ECSCCSSCCCHHHH
T ss_pred ceEEEEcCCC-CcEEEECCEEEEeeecC-CCcEEEEecCCCCCCCCEEEEEcCCCEE-CCCCcCCCCchhHh
Confidence 5778888888 99999999999999997 8899999999988899999999876665 35679999976553
No 32
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=84.05 E-value=1.5 Score=31.45 Aligned_cols=50 Identities=30% Similarity=0.475 Sum_probs=32.9
Q ss_pred EEEcceEeeeeccc-----cCCceEEEeecCCCcceeeEEEee----CCe--EEeccCCCCCCc
Q psy10009 36 LVYRGYYFRREKET-----CNKKIMWKCTSYSRTKCHSRIHTF----DGH--IIFNSDKHNHLP 88 (235)
Q Consensus 36 L~y~g~~y~r~k~~-----k~~k~yWrC~~~~~~kC~aRv~T~----~~~--iv~~~~~HnH~P 88 (235)
+.-+||..++-.+. +.-+.|.||+. ..|.|+-... +.. ++.+...|||++
T Consensus 16 ~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 76 (78)
T 1wj2_A 16 LLDDGYRWRKYGQKVVKGNPYPRSYYKCTT---PGCGVRKHVERAATDPKAVVTTYEGKHNHDL 76 (78)
T ss_dssp CCCSSSCBCCCEEECCTTCSSCEEEEEEEC---SSCEEEEEEEEETTTTSEEEEEEESCCSSCC
T ss_pred cCCCCchhhhCcccccCCCcCeeEEeecCc---CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCC
Confidence 44577777665432 35589999996 4799865443 222 245788999985
No 33
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=81.37 E-value=2.4 Score=30.13 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=34.3
Q ss_pred eEEEcceEeeeeccc-----cCCceEEEeecCCCcceeeEEEee----CCe--EEeccCCCCCCc
Q psy10009 35 KLVYRGYYFRREKET-----CNKKIMWKCTSYSRTKCHSRIHTF----DGH--IIFNSDKHNHLP 88 (235)
Q Consensus 35 ~L~y~g~~y~r~k~~-----k~~k~yWrC~~~~~~kC~aRv~T~----~~~--iv~~~~~HnH~P 88 (235)
.+.-+||..++-.+. +.-+.|.||+. ..|.|+-... +.. ++.+...|||..
T Consensus 12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~---~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~ 73 (76)
T 2ayd_A 12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS---PGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73 (76)
T ss_dssp SCCCCSSCEEEEEEECCTTCSSCEEEEEECS---TTCCCEEEEEECSSSTTEEEEEEESCCSSCC
T ss_pred CcCCCCchhhhCcccccCCCCCceeEeEcCC---CCCCceeeEEEECCCCCEEEEEEccCcCCCC
Confidence 345688888776543 34589999995 4899865442 222 246788999984
No 34
>4agk_A Capsid protein, coat protein, C; hydrolase, viral protein; 1.81A {Aura virus} PDB: 4agj_A 1kxa_A 2snw_A 1svp_A 1kxb_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=32.75 E-value=19 Score=28.28 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.3
Q ss_pred cCCCccc-CccEEEEEEeccc
Q psy10009 146 ITKPLNG-NDINNFEVWEGLN 165 (235)
Q Consensus 146 ~~k~f~~-sGpvval~l~g~n 165 (235)
.++|+++ +|.|||++|-|-|
T Consensus 109 SGrPi~Dn~GrVVaIVlGG~n 129 (158)
T 4agk_A 109 SGRPILDNSGKVVAIVLGGAN 129 (158)
T ss_dssp TTCEEECTTSCEEEEEEEEEE
T ss_pred CCCccccCCCCEEEEEecCCC
Confidence 5677776 8999999998854
No 35
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=27.12 E-value=90 Score=22.65 Aligned_cols=67 Identities=15% Similarity=0.027 Sum_probs=39.2
Q ss_pred CCCCCCcccccccCCCCCCCccccCCCCCCCcCCCCCchhHHHHHHHHHHhhchhhhhhhhhcccCCCcccCccEEEEEE
Q psy10009 82 DKHNHLPHTMESDLHPSSEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTKNIRLNLQNITKPLNGNDINNFEVW 161 (235)
Q Consensus 82 ~~HnH~P~~te~el~~~~e~t~alikP~~~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~y~~~~~k~f~~sGpvval~l 161 (235)
..|.|.|.... ...+++||.+++ | . =..|...+..+|+......- .|-.+-+.+
T Consensus 8 ~~~~~~~~~~~--------~V~V~lKpgVlD-----P--q-G~aV~~aL~~LG~~~V~~VR----------~GK~~el~~ 61 (94)
T 1vq3_A 8 HHHHHLPLFKF--------AIDVQYRSNVRD-----P--R-GETIERVLREEKGLPVKKLR----------LGKSIHLEV 61 (94)
T ss_dssp -CCCCCCEEEE--------EEEEEECTTSCC-----H--H-HHHHHHHHHHTTCCCEEEEE----------EEEEEEEEE
T ss_pred ccccccceEEE--------EEEEEECCCCcC-----c--H-HHHHHHHHHHcCCCccceee----------eeeEEEEEe
Confidence 34667665433 578889999988 3 1 13455556667776432221 344777777
Q ss_pred eccc---HHHHHHHHh
Q psy10009 162 EGLN---IVKTGRVML 174 (235)
Q Consensus 162 ~g~n---av~~~r~l~ 174 (235)
.+++ |-+...+|+
T Consensus 62 ~~~~~~~a~~~v~~mc 77 (94)
T 1vq3_A 62 EAENKEKAYEIVKKAC 77 (94)
T ss_dssp ECSSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH
Confidence 7653 455555555
Done!