RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10009
(235 letters)
>gnl|CDD|173387 PTZ00093, PTZ00093, nucleoside diphosphate kinase, cytosolic;
Provisional.
Length = 149
Score = 133 bits (337), Expect = 1e-39
Identities = 51/75 (68%), Positives = 63/75 (84%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG N+VK GR +LGATNP +SAPGT+RGD C+ VGRN++HGSDSVESAK+EIALWF
Sbjct: 75 VWEGKNVVKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKP 134
Query: 220 KEVIGWTNASESWIY 234
+E++ WT+ S WIY
Sbjct: 135 EELVSWTSHSSKWIY 149
>gnl|CDD|239876 cd04413, NDPk_I, Nucleoside diphosphate kinase Group I
(NDPk_I)-like: NDP kinase domains are present in a large
family of structurally and functionally conserved
proteins from bacteria to humans that generally catalyze
the transfer of gamma-phosphates of a nucleoside
triphosphate (NTP) donor onto a nucleoside diphosphate
(NDP) acceptor through a phosphohistidine intermediate.
The mammalian nm23/NDP kinase gene family can be divided
into two distinct groups. The group I genes encode
proteins that generally have highly homologous
counterparts in other organisms and possess the classic
enzymatic activity of a kinase. This group includes
vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its
counterparts in bacteria, archea and other eukaryotes.
NDP kinases exist in two different quaternary
structures; all known eukaryotic enzymes are hexamers,
while some bacterial enzymes are tetramers, as in
Myxococcus. They possess the NDP kinase active site
motif (NXXH[G/A]SD) and the nine residues that are most
essential for catalysis.
Length = 130
Score = 121 bits (306), Expect = 3e-35
Identities = 41/58 (70%), Positives = 50/58 (86%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217
V EG N VKT R ++GATNPAD+APGT+RGD + +GRNI+HGSDSVESA++EIALWF
Sbjct: 73 VLEGENAVKTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130
>gnl|CDD|201162 pfam00334, NDK, Nucleoside diphosphate kinase.
Length = 135
Score = 114 bits (288), Expect = 2e-32
Identities = 37/63 (58%), Positives = 50/63 (79%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG N V R ++GATNPA++APGT+RGD + +GRN +HGSDS ESA++EIAL+F E
Sbjct: 73 VLEGENAVSVVRELMGATNPAEAAPGTIRGDFAVSIGRNAVHGSDSPESAEREIALFFPE 132
Query: 220 KEV 222
+E+
Sbjct: 133 EEI 135
>gnl|CDD|197791 smart00562, NDK, Enzymes that catalyze nonsubstrate specific
conversions of nucleoside diphosphates to nucleoside
triphosphates. These enzymes play important roles in
bacterial growth, signal transduction and pathogenicity.
Length = 135
Score = 109 bits (276), Expect = 1e-30
Identities = 35/63 (55%), Positives = 49/63 (77%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG + VKT R ++G T+P ++APGT+RGD + +GRN +HGSDS ESA++EIAL+F E
Sbjct: 73 VLEGEDAVKTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPE 132
Query: 220 KEV 222
E+
Sbjct: 133 SEI 135
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 110 bits (277), Expect = 9e-30
Identities = 42/76 (55%), Positives = 57/76 (75%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG ++K GR ++GAT+P S PGT+RGDL + VGRNI+HGSD E+AK EI LWF
Sbjct: 161 VWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKP 220
Query: 220 KEVIGWTNASESWIYE 235
+E++ +T+ +E WIY
Sbjct: 221 EELVSYTSNAEKWIYG 236
>gnl|CDD|179085 PRK00668, ndk, mulitfunctional nucleoside diphosphate
kinase/apyrimidinic endonuclease/3'-; Validated.
Length = 134
Score = 106 bits (267), Expect = 2e-29
Identities = 34/60 (56%), Positives = 47/60 (78%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG N + R ++GATNPA++APGT+RGD + +G N++HGSDS ESA +EIAL+F+E
Sbjct: 74 VLEGENAIAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133
>gnl|CDD|223183 COG0105, Ndk, Nucleoside diphosphate kinase [Nucleotide transport
and metabolism].
Length = 135
Score = 101 bits (253), Expect = 3e-27
Identities = 34/60 (56%), Positives = 48/60 (80%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG N + R ++GATNPA++APGT+RGD + VG N++HGSDS ESA++EIAL+F++
Sbjct: 75 VLEGENAISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134
>gnl|CDD|238335 cd00595, NDPk, Nucleoside diphosphate kinases (NDP kinases, NDPks):
NDP kinases, responsible for the synthesis of nucleoside
triphosphates (NTPs), are involved in numerous
regulatory processes associated with proliferation,
development, and differentiation. They are vital for
DNA/RNA synthesis, cell division, macromolecular
metabolism and growth. The enzymes generate NTPs or
their deoxy derivatives by terminal (gamma)
phosphotransfer from an NTP such as ATP or GTP to any
nucleoside diphosphate (NDP) or its deoxy derivative.
The sequence of NDPk has been highly conserved through
evolution. There is a single histidine residue conserved
in all known NDK isozymes, which is involved in the
catalytic mechanism. The first confirmed metastasis
suppressor gene was the NDP kinase protein encoded by
the nm23 gene. Unicellular organisms generally possess
only one gene encoding NDP kinase, while most
multicellular organisms possess not only an ortholog
that provides most of the NDP kinase enzymatic activity
but also multiple divergent paralogous genes. The human
genome codes for at least nine NDP kinases and can be
classified into two groups, Groups I and II, according
to their genomic architecture and distinct enzymatic
activity. Group I isoforms (A-D) are well-conserved,
catalytically active, and share 58-88% identity between
each other, while Group II are more divergent, with only
NDPk6 shown to be active. NDP kinases exist in two
different quaternary structures; all known eukaryotic
enzymes are hexamers, while some bacterial enzymes are
tetramers, as in Myxococcus. The hexamer can be viewed
as trimer of dimers, while tetramers are dimers of
dimers, with the dimerization interface conserved.
Length = 133
Score = 88.2 bits (219), Expect = 3e-22
Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 160 VWEGLNIVKTGRVMLGATNPA---DSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALW 216
+ E N V R MLG TNP APG++R D V RN +HGSDSVESA +EIA +
Sbjct: 73 ILEKDNAVGEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFF 132
Query: 217 F 217
F
Sbjct: 133 F 133
>gnl|CDD|184733 PRK14540, PRK14540, nucleoside diphosphate kinase; Provisional.
Length = 134
Score = 73.3 bits (180), Expect = 1e-16
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG N + T R M+G TNPA++ PGT+RGD + NI+H SDS ESA++EI L+F E
Sbjct: 75 VIEGENAISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134
>gnl|CDD|203031 pfam04500, FLYWCH, FLYWCH zinc finger domain. Mutations in the
mod(mdg4) gene have effects on variegation (PEV), the
properties of insulator sequences, correct path-finding
of growing nerve cells, meiotic pairing of chromosomes,
and apoptosis. The occurrence of FLYWCH motifs in
mod(mdg4) gene product and other proteins is discussed
in.
Length = 62
Score = 62.0 bits (151), Expect = 4e-13
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 33 SRKLVYRGYYFRREKETCNKKIMWKCTSYSRTKCHSRIHTF--DGHIIFNSDKHNH 86
KLVY GY + R K N K W+C+ Y + KC +R+ T DG +I + +HNH
Sbjct: 8 RPKLVYDGYRYTRNK-RRNGKTYWRCSQYRKLKCRARVITDRGDGRVIVTNGEHNH 62
>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
Length = 140
Score = 60.7 bits (147), Expect = 8e-12
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
+ E N V R ++GAT+PA++A GTVR G NI+HGSDS E+A E +F+
Sbjct: 74 ILEKENAVADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSA 133
Query: 220 KEVI 223
+EV+
Sbjct: 134 EEVV 137
>gnl|CDD|184734 PRK14545, PRK14545, nucleoside diphosphate kinase; Provisional.
Length = 139
Score = 59.1 bits (143), Expect = 3e-11
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
+ E N V+ R ++GATNPAD+A GT+R +G N +HGSDS E+A+ E A F
Sbjct: 76 ILEKENAVEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAG 135
Query: 220 KE 221
+E
Sbjct: 136 RE 137
>gnl|CDD|173010 PRK14544, PRK14544, nucleoside diphosphate kinase; Provisional.
Length = 183
Score = 59.8 bits (145), Expect = 4e-11
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 10/74 (13%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCI----------QVGRNIMHGSDSVESA 209
V +G V+ R ++G T+P + PGT+RGD I +V N++H SDS E A
Sbjct: 109 VLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHASDSPEEA 168
Query: 210 KKEIALWFTEKEVI 223
++EI WF E+E++
Sbjct: 169 EREIKFWFREEEIL 182
>gnl|CDD|237749 PRK14543, PRK14543, nucleoside diphosphate kinase; Provisional.
Length = 169
Score = 53.4 bits (128), Expect = 5e-09
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGR----------NIMHGSDSVESA 209
V EG+ V+ R G+T P + PGT+RGD N++H S + + A
Sbjct: 83 VVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDA 142
Query: 210 KKEIALWFTEKEVIGWTNASE 230
+EI +WF + E++ + E
Sbjct: 143 LREIPIWFKDNEILTYKRDDE 163
>gnl|CDD|239877 cd04414, NDPk6, Nucleoside diphosphate kinase 6 (NDP kinase 6,
NDPk6, NM23-H6; NME6; Inhibitor of p53-induced
apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding
NDPk6 is expressed mainly in mitochondria, but also
found at a lower level in most tissues. NDPk6 has all
nine residues considered crucial for enzyme structure
and activity, and has been found to have NDP kinase
activity. It may play a role in cell growth and cell
cycle progression. The nm23-H6 gene locus has been
implicated in a variety of malignant tumors.
Length = 135
Score = 50.5 bits (121), Expect = 4e-08
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 165 NIVKTGRVMLGATN---PADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217
N +KT R ++G T SAP ++RG + RN HGSDS SA++EIAL+F
Sbjct: 79 NAIKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFF 134
>gnl|CDD|173008 PRK14542, PRK14542, nucleoside diphosphate kinase; Provisional.
Length = 137
Score = 46.2 bits (109), Expect = 1e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 165 NIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEV 222
N V R ++GAT+P ++A GT+R N +HGSDS +A EI+ +F E+
Sbjct: 79 NAVLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNEL 136
>gnl|CDD|239878 cd04415, NDPk7A, Nucleoside diphosphate kinase 7 domain A (NDPk7A):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 131
Score = 39.7 bits (93), Expect = 2e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 163 GLNIVKTGRVMLGATNPA---DSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217
G + + R +LG TN + AP ++R RN HGSDSV SA +E+ +F
Sbjct: 74 GDDAISEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131
>gnl|CDD|239879 cd04416, NDPk_TX, NDP kinase domain of thioredoxin
domain-containing proteins (TXNDC3 and TXNDC6): Txl-2
(TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of
Group II N-terminal thioredoxin domains followed by one
or three NDP kinase domains, respectively. Sptrx-2,
which has a tissue specific distribution in human
testis, has been considered as a member of the nm23
family (nm23-H8) and exhibits a high homology with sea
urchin IC1 (intermediate chain-1) protein, a component
of the sperm axonemal outer dynein arm complex. Txl-2 is
mainly represented in close association with
microtubules within tissues with cilia and flagella such
as seminiferous epithelium (spermatids) and lung airway
epithelium, suggesting possible role in control of
microtubule stability and maintenance.
Length = 132
Score = 38.7 bits (91), Expect = 5e-04
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 165 NIVKTGRVMLGATNPAD---SAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217
N V+ R ++G T+P + P ++R N +HGS S E A+KEI +F
Sbjct: 77 NAVEEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132
>gnl|CDD|215503 PLN02931, PLN02931, nucleoside diphosphate kinase family protein.
Length = 177
Score = 38.7 bits (90), Expect = 8e-04
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 160 VWEGLNIVKTGRVMLGATNPAD---SAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALW 216
V E N V R ++G T+ S P ++R + +N +HGSDS ESA++EI+ +
Sbjct: 102 VLEKENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFF 161
Query: 217 FTE 219
F +
Sbjct: 162 FGD 164
>gnl|CDD|239875 cd04412, NDPk7B, Nucleoside diphosphate kinase 7 domain B (NDPk7B):
The nm23-H7 class of nucleoside diphosphate kinase
(NDPk7) consists of an N-terminal DM10 domain and two
functional catalytic NDPk modules, NDPk7A and NDPk7B.
The function of the DM10 domain, which also occurs in
multiple copies in other proteins, is unknown. NDPk7 is
predominantly expressed in testes, although appreciable
amount are also found in liver, heart, brain, ovary,
small intestine and spleen. The nm23-H7 gene is located
in or near the hereditary prostrate cancer
susceptibility locus. Nm23-H7 may be involved in the
development of colon and gastric carcinoma, the latter
possibly in a type-specific manner.
Length = 134
Score = 34.9 bits (81), Expect = 0.009
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 163 GLNIVKTGRVMLGATNPAD---SAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217
G N VKT R G +P P T+R +N +H +D E E+ +F
Sbjct: 77 GENAVKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134
>gnl|CDD|239880 cd04418, NDPk5, Nucleoside diphosphate kinase homolog 5 (NDP kinase
homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced
apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is
almost exclusively found in testis, especially in the
flagella of spermatids and spermatozoa, in association
with axoneme microtubules, and may play a role in
spermatogenesis by increasing the ability of late-stage
spermatids to eliminate reactive oxygen species. It
belongs to the nm23 Group II genes and appears to differ
from the other human NDPks in that it lacks two
important catalytic site residues, and thus does not
appear to possess NDP kinase activity. NDPk5 confers
protection from cell death by Bax and alters the
cellular levels of several antioxidant enzymes,
including glutathione peroxidase 5 (Gpx5).
Length = 132
Score = 34.0 bits (78), Expect = 0.022
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 165 NIVKTGRVMLGATNPA---DSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217
N + + +LG TN ++ P ++R RN +HGSDS SA++EI F
Sbjct: 76 NAISYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMF 131
>gnl|CDD|201420 pfam00735, Septin, Septin. Members of this family include CDC3,
CDC10, CDC11 and CDC12/Septin. Members of this family
bind GTP. As regards the septins, these are polypeptides
of 30-65kDa with three characteristic GTPase motifs
(G-1, G-3 and G-4) that are similar to those of the Ras
family. The G-4 motif is strictly conserved with a
unique septin consensus of AKAD. Most septins are
thought to have at least one coiled-coil region, which
in some cases is necessary for intermolecular
interactions that allow septins to polymerise to form
rod-shaped complexes. In turn, these are arranged into
tandem arrays to form filaments. They are
multifunctional proteins, with roles in cytokinesis,
sporulation, germ cell development, exocytosis and
apoptosis.
Length = 280
Score = 28.8 bits (65), Expect = 2.1
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 116 DNPADKKKSTI-MKTYSKLSLTKNIRLNLQNITKPLNGNDINNFEVWE 162
P++K K T+ +K + ++LNL I P G+ I+N W+
Sbjct: 36 PGPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPGFGDAIDNSNCWK 83
>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
Length = 1419
Score = 28.5 bits (63), Expect = 3.6
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 21/108 (19%)
Query: 83 KHNHLPHTMESDLHP------SSEPTLALPSGSESNDCHDNPAD----KKKSTIMKTYSK 132
+H H ++ DL P +PTL SE +N D KK +K + K
Sbjct: 95 EHGH-SASLNDDLSPLQYERIKYQPTLPKALASEYQILEENHGDDFINKKDYEEVKRFLK 153
Query: 133 LSLTKNIRLNLQNITKPLNGNDINNFEVWEGLNIVKTGRVMLGATNPA 180
NL N+ LN + NN E ++G N++K G ++ G P
Sbjct: 154 ---------NLHNLPI-LNVKETNNHESFKGGNVLKIGIILSGGPAPG 191
>gnl|CDD|193443 pfam12970, DUF3858, Domain of Unknown Function with PDB structure
(DUF3858). This family is based on the third domain of
the PDB structure 3KD4(residues 410-525). It is
structurally similar to part of neuropilin-2 (Z=4.6,
rmsd 3.6A for 83 CA, 7% seq id). This domain and the
second domain appears to be part of peptide-n-glycanase
(1x3w, 2g9f).
Length = 116
Score = 27.0 bits (60), Expect = 4.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 116 DNPADKKKSTIMKTYSKLSLTKNIRLNLQNIT 147
N K T+ K K+ + ++++L Q IT
Sbjct: 61 SNAVGKLTITVKKEGDKIEVVRSLKLKKQLIT 92
>gnl|CDD|226026 COG3495, COG3495, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 166
Score = 27.6 bits (61), Expect = 4.4
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 84 HNHLPHTMESDLHPSSEPTLALPSGSESNDCHDNPADKKKS 124
P DL P +E + D + ++
Sbjct: 22 AAETPELDWLDLIPENERNAFDQQPHDMPDANGGEPASQQI 62
>gnl|CDD|218354 pfam04966, OprB, Carbohydrate-selective porin, OprB family.
Length = 365
Score = 27.8 bits (62), Expect = 4.8
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 124 STIMKTYSKLSLTKNIRL--NLQNITKPLNGNDINN 157
+++ + LT N+ L +LQ I P +D +N
Sbjct: 318 EYVLELFYGYQLTPNLTLTPDLQYIINPGGNSDNDN 353
>gnl|CDD|179387 PRK02228, PRK02228, V-type ATP synthase subunit F; Provisional.
Length = 100
Score = 26.4 bits (59), Expect = 4.9
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 75 GHIIFNSDKHNHLPHTMESDLHPSSEPTL-ALPSGSES 111
G ++ + D LP + L S EPT+ L G S
Sbjct: 46 GILVMHDDDLEKLPRRLRRTLEESVEPTVVTLGGGGGS 83
>gnl|CDD|238567 cd01147, HemV-2, Metal binding protein HemV-2. These proteins are
predicted to function as initial receptors in ABC
transport of metal ions. They belong to the TroA
superfamily of helical backbone metal receptor proteins
that share a distinct fold and ligand binding mechanism.
A typical TroA protein is comprised of two globular
subdomains connected by a single helix and can bind the
metal ion in the cleft between these domains. In
addition, these proteins sometimes have a low complexity
region containing a metal-binding histidine-rich motif
(repetitive HDH sequence).
Length = 262
Score = 27.7 bits (62), Expect = 5.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 157 NFEVWEGLNIVKTGRVMLGATNP 179
N W+ L VK GRV L P
Sbjct: 233 NRPFWQSLKAVKNGRVYLLPALP 255
>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase. This protein is a
tetrameric, zinc-binding, NAD-dependent enzyme of
threonine catabolism. Closely related proteins include
sorbitol dehydrogenase, xylitol dehydrogenase, and
benzyl alcohol dehydrogenase. Eukaryotic examples of
this enzyme have been demonstrated experimentally but do
not appear in database search results.E. coli His-90
modulates substrate specificity and is believed part of
the active site [Energy metabolism, Amino acids and
amines].
Length = 340
Score = 27.5 bits (61), Expect = 7.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 11 GNDRLLGLFPHDLSKYETAKIVSRKLVYRGYYFRREKET 49
G LLGL P ++ T K++ + L G R ET
Sbjct: 255 GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFET 293
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.403
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,369,771
Number of extensions: 986446
Number of successful extensions: 728
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 36
Length of query: 235
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 141
Effective length of database: 6,768,326
Effective search space: 954333966
Effective search space used: 954333966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)