RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10009
(235 letters)
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis,
transferase, struc genomics, structural genomics
consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP:
d.58.6.1
Length = 169
Score = 152 bits (386), Expect = 5e-47
Identities = 45/76 (59%), Positives = 65/76 (85%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VW+GL++V+T R ++GATNPAD+ PGT+RGD CI+VG+N++HGSDSVESA++EIALWF
Sbjct: 94 VWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRA 153
Query: 220 KEVIGWTNASESWIYE 235
E++ W +++ W+YE
Sbjct: 154 DELLCWEDSAGHWLYE 169
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23
GEN, hexamer, activator, oncogene, ATP-binding, cell
cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens}
SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A
1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A*
1ndl_A*
Length = 151
Score = 151 bits (383), Expect = 1e-46
Identities = 53/76 (69%), Positives = 66/76 (86%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEGLN+VKTGRVMLG TNPADS PGT+RGD CIQVGRNI+HGSDSV+SA+KEI+LWF
Sbjct: 76 VWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKP 135
Query: 220 KEVIGWTNASESWIYE 235
+E++ + + + W+YE
Sbjct: 136 EELVDYKSCAHDWVYE 151
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, giardiasis; 2.65A {Giardia lamblia}
Length = 155
Score = 150 bits (382), Expect = 2e-46
Identities = 44/76 (57%), Positives = 56/76 (73%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG N+V R M+G T PA+SAPGT+RGD I VGRNI+HGS +++ A +EIALWF
Sbjct: 80 VWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKP 139
Query: 220 KEVIGWTNASESWIYE 235
+EV W+ + ES IYE
Sbjct: 140 EEVASWSCSLESHIYE 155
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding,
transferase, tumor suppressor; 2.10A {Homo sapiens}
Length = 172
Score = 151 bits (383), Expect = 2e-46
Identities = 56/76 (73%), Positives = 68/76 (89%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEGLN+VKTGRVMLG TNPADS PGT+RGD CIQVGRNI+HGSDSVESA+KEI LWF
Sbjct: 97 VWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHP 156
Query: 220 KEVIGWTNASESWIYE 235
+E++ +T+ +++WIYE
Sbjct: 157 EELVDYTSCAQNWIYE 172
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A
{Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Length = 153
Score = 150 bits (381), Expect = 2e-46
Identities = 38/76 (50%), Positives = 54/76 (71%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
WEG+ +V + R ++G T+P + PGT+RGDL +Q GRNI+HGSDS E+ K+EI LWF E
Sbjct: 78 AWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKE 137
Query: 220 KEVIGWTNASESWIYE 235
E+ W +A +W+ E
Sbjct: 138 GELCKWDSALATWLRE 153
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta
sandwich, ATP-binding, magnesium, metal-B mitochondrion;
3.10A {Saccharomyces cerevisiae}
Length = 161
Score = 150 bits (380), Expect = 3e-46
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG ++V+ GR +LGATNP SAPGT+RGD I +GRN+ HGSDSV+SA++EI LWF +
Sbjct: 86 VWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKK 145
Query: 220 KEVIGWTNASESWIYE 235
+E++ W + WIYE
Sbjct: 146 EELVDWESNQAKWIYE 161
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A*
4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Length = 161
Score = 150 bits (380), Expect = 4e-46
Identities = 51/76 (67%), Positives = 61/76 (80%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEGL +VK GRV+LGATNPADS PGT+RGD + VGRN+ HGSDSVESAK+EIA WF
Sbjct: 84 VWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKA 143
Query: 220 KEVIGWTNASESWIYE 235
+E++ WT+ S IYE
Sbjct: 144 EELVSWTSHSVKQIYE 159
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein
family; HET: ADP; 2.22A {Staphylococcus aureus subsp}
PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Length = 157
Score = 149 bits (378), Expect = 7e-46
Identities = 38/76 (50%), Positives = 59/76 (77%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG + V R ++G+TNP++++PG++RGDL + VGRNI+HGSDS+ESA++EI LWF E
Sbjct: 74 VVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNE 133
Query: 220 KEVIGWTNASESWIYE 235
E+ + + ++W+YE
Sbjct: 134 NEITSYASPRDAWLYE 149
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians,
transferase; 2.20A {Virgibacillus halodenitrificans}
SCOP: d.58.6.1
Length = 150
Score = 148 bits (375), Expect = 1e-45
Identities = 41/75 (54%), Positives = 50/75 (66%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEGLN T R +LGATNP+D+APGT+RGD + GRN +HGSDS SA KEI +F
Sbjct: 75 VWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGG 134
Query: 220 KEVIGWTNASESWIY 234
E T A+ + IY
Sbjct: 135 GEAASGTPAAAADIY 149
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding,
metal-binding, phosphoprotein, nucleotide metabolism,
cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Length = 148
Score = 148 bits (375), Expect = 2e-45
Identities = 36/75 (48%), Positives = 55/75 (73%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VW+G +V T R M+G T P ++APGT+RGD + V +NI+HGSDS+ESA++EI ++F E
Sbjct: 74 VWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKE 133
Query: 220 KEVIGWTNASESWIY 234
+E++ ++ WIY
Sbjct: 134 EELVDYSKLMNEWIY 148
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid,
seattle structural genomics center for infect disease,
babesiosis; 2.50A {Babesia bovis}
Length = 156
Score = 148 bits (375), Expect = 2e-45
Identities = 33/75 (44%), Positives = 48/75 (64%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
+WEG +K GR ++G T+P +SA GT+RGD + NI+H S S E A +E ALWFT
Sbjct: 82 IWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTP 141
Query: 220 KEVIGWTNASESWIY 234
++++ W + WIY
Sbjct: 142 EQLVTWERSVGGWIY 156
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative,
structural genomics, SGPP; 3.05A {Plasmodium falciparum}
SCOP: d.58.6.1
Length = 157
Score = 147 bits (374), Expect = 2e-45
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG+++VK GR ++G TNP S GT+RGD C++V +N++HGSDSV SA KEI +WF
Sbjct: 82 VWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKA 141
Query: 220 KEVIGWTNASESWIY 234
+E+ W + + WI
Sbjct: 142 EELTQWKHHMKEWIC 156
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum
sativum} SCOP: d.58.6.1
Length = 182
Score = 148 bits (375), Expect = 3e-45
Identities = 43/76 (56%), Positives = 57/76 (75%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG ++ GR ++GAT+P SAPGT+RGDL + VGRNI+HGSD E+AK EI LWF
Sbjct: 105 VWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKP 164
Query: 220 KEVIGWTNASESWIYE 235
+E++ +T+ SE WIY
Sbjct: 165 EELVSFTSNSEKWIYG 180
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza
sativa} SCOP: d.58.6.1
Length = 150
Score = 146 bits (370), Expect = 1e-44
Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG ++V TGR ++GAT P ++APGT+R D ++VGRN++HGSDSV++ KKEIALWF E
Sbjct: 75 VWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPE 134
Query: 220 KEVIGWTNASESWIYE 235
+ W + WIYE
Sbjct: 135 -GLAEWRSNLHPWIYE 149
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate,
transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Length = 149
Score = 145 bits (368), Expect = 2e-44
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
+WEG N+V TGR ++GATNPA S PGT+RGD I +GRN++HGSDSVESA+KEIALWF +
Sbjct: 74 IWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPD 133
Query: 220 KEVIGWTNASESWIYE 235
+ W ++ W+YE
Sbjct: 134 -GPVNWQSSVHPWVYE 148
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN
hexamer structure, ATP-binding, magnesium, metal-
nucleotide metabolism; HET: TNM TNV; 1.65A
{Dictyostelium discoideum} PDB: 1b4s_A* 1mn9_A* 1f3f_A*
1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A*
1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A*
1hhq_A 1lwx_A* 1npk_A ...
Length = 155
Score = 145 bits (367), Expect = 3e-44
Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V+EG +V + R+M+G TNP SAPG++RGD + VGRNI+ GSDSVESA +EIALWF
Sbjct: 81 VFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKP 140
Query: 220 KEVIGWTNASESWIYE 235
+E++ + +YE
Sbjct: 141 EELLTEVKPNP-NLYE 155
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP;
2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB:
2az1_A 2zua_A
Length = 164
Score = 143 bits (364), Expect = 1e-43
Identities = 32/78 (41%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESA--KKEIALWF 217
VWEG + + R ++GAT+ D+APGT+RGD +G N++HGSD + ++EIAL+F
Sbjct: 81 VWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFF 140
Query: 218 TEKEVIGWTNASESWIYE 235
+ E++ W + +W+YE
Sbjct: 141 DDDELVDWDRDASAWVYE 158
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, encepha cuniculi, structural
genomics; 2.08A {Encephalitozoon cuniculi}
Length = 151
Score = 142 bits (361), Expect = 2e-43
Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VW G + V GR ++G TNP ++ GT+RGD + G+NI+HGSD VE+A+KEI LW +
Sbjct: 78 VWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGD 137
Query: 220 KEVIGWTNASESWIY 234
+V + + WIY
Sbjct: 138 -DVQPVSFFDKEWIY 151
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural
genomics, NPPSFA, NAT project on protein structural and
functional analyses; HET: GDP; 1.70A {Pyrococcus
horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A*
2dy9_A* 2dya_A*
Length = 160
Score = 137 bits (347), Expect = 3e-41
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 4/79 (5%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGR---NIMHGSDSVESAKKEIALW 216
V EG V+ R M GAT+P D+APGT+RGD ++V N++H SDS ESA++EI+L+
Sbjct: 80 VLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLF 139
Query: 217 FTEKEVIGWTNASESWIYE 235
F +E+ + A++ W Y+
Sbjct: 140 FKPEELFEYPRAAD-WFYK 157
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer,
signaling protein,transferase; 1.62A {Escherichia coli}
Length = 142
Score = 135 bits (342), Expect = 1e-40
Identities = 35/67 (52%), Positives = 43/67 (64%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG N V+ R +LGATNPA++ GT+R D + N HGSDSVESA +EIA +F E
Sbjct: 75 VLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGE 134
Query: 220 KEVIGWT 226
EV T
Sbjct: 135 GEVCPRT 141
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A
{Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R
3pj9_A
Length = 144
Score = 134 bits (339), Expect = 4e-40
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG N V R ++GATNPA +A GT+R D + +N +HGSDS+E+AK EIA +F E
Sbjct: 75 VLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRE 134
Query: 220 KEVIGWT 226
E+ +
Sbjct: 135 TEIHSYP 141
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition
state mimic, transition state analog, transferas; HET:
ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Length = 190
Score = 135 bits (341), Expect = 6e-40
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGR----------NIMHGSDSVESA 209
V EG+ ++ R + GAT P + PGT+RGD + N++H S + A
Sbjct: 104 VVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADA 163
Query: 210 KKEIALWFTEKEVIGWTNASESWIY 234
+EI +WF + E++ + E Y
Sbjct: 164 MREIPIWFKDNEILNYKRDDECEHY 188
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase
nucleotide binding, ATP-binding, magnesium,
metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga
mimivirus} PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A*
3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A*
2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A*
3gpa_A* ...
Length = 146
Score = 133 bits (336), Expect = 9e-40
Identities = 29/66 (43%), Positives = 42/66 (63%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V+EG + + R + G TNP SAPGT+RGDL + N++H SDS +SA EI++WF E
Sbjct: 80 VYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPE 139
Query: 220 KEVIGW 225
++
Sbjct: 140 TKMETD 145
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 133 bits (336), Expect = 1e-39
Identities = 34/66 (51%), Positives = 49/66 (74%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
VWEG N+V+ R M+G T+ A++APGT+RGD + + RN++H SDSVE A++EI LWF
Sbjct: 97 VWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQS 156
Query: 220 KEVIGW 225
E++ W
Sbjct: 157 SELVSW 162
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Length = 137
Score = 131 bits (333), Expect = 2e-39
Identities = 29/64 (45%), Positives = 45/64 (70%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG +V R M+GAT+P D+ PGT+RGD + N++HGS ++E A++EIAL+F
Sbjct: 74 VLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRP 133
Query: 220 KEVI 223
+E++
Sbjct: 134 EELL 137
>4ek2_A Nucleoside diphosphate kinase; seattle structural genomics center
for infectious disease, S DAMP, niaid; HET: DA; 2.00A
{Burkholderia thailandensis} PDB: 4dut_A*
Length = 145
Score = 127 bits (322), Expect = 1e-37
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG + + R ++GAT+P + GT+R D + N +HGSD+ E+A+ EIA +F E
Sbjct: 80 VLEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPE 139
Query: 220 KEVI 223
V
Sbjct: 140 MNVY 143
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A
{Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Length = 142
Score = 122 bits (309), Expect = 8e-36
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 160 VWEGLNIVKTGRVMLGATNPADS---APGTVRGDLCIQVGRNIMHGSDSVESAKKEIALW 216
V EG + +K R ++G T+ ++ AP ++R G+N +H SDS ESA+ EI
Sbjct: 76 VLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFI 135
Query: 217 FTEKEVI 223
F+ E++
Sbjct: 136 FSGLEIV 142
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate,
transferase; 2.60A {Mycobacterium tuberculosis} SCOP:
d.58.6.1
Length = 136
Score = 121 bits (305), Expect = 3e-35
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 160 VWEGLNIVKTGRVMLGATNPAD-SAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFT 218
+ EG + R + G T+P +APGT+RGD ++ N++HGSDS ESA++EIALWF
Sbjct: 75 IVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFP 134
Query: 219 E 219
Sbjct: 135 G 135
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin
fold, transferase; HET: PGE; 2.50A {Pyrobaculum
aerophilum} SCOP: d.58.6.1
Length = 195
Score = 121 bits (304), Expect = 2e-34
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 10/74 (13%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCI----------QVGRNIMHGSDSVESA 209
V +G V+ R ++G T+P + PGT+RGD I +V N++H SDS A
Sbjct: 121 VLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEA 180
Query: 210 KKEIALWFTEKEVI 223
++EI WF E+EV+
Sbjct: 181 EREIRFWFREEEVL 194
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain,
alternative splicing, DNA-binding, metal- binding,
nucleus, metal binding protein; NMR {Homo sapiens}
Length = 87
Score = 61.6 bits (149), Expect = 6e-13
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 33 SRKLVYRGYYFRREKETCNKKIMWKCTSYSRTKCHSRIHTFDGHIIFNSDKHNHLPHT 90
R LV+ + +R+EK +K+ W C +R C SR T I+ H H P
Sbjct: 20 GRFLVHESFLYRKEK-AAGEKVYWMCRDQARLGCRSRAITQGHRIMVMRS-HCHQPDL 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.011
Identities = 6/23 (26%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 91 MESDLH---PSSEPTLALPSGSE 110
+++ L S P LA+ + E
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
Score = 29.9 bits (66), Expect = 0.47
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 18/47 (38%)
Query: 162 EGLNIVK-TGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVE 207
E + K + L A DSAP L I+ ++E
Sbjct: 18 EKQALKKLQASLKLYA--D-DSAPA-----LAIKA---------TME 47
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.5 bits (68), Expect = 0.42
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 16/69 (23%)
Query: 1 MFR-----EQDSPSPGNDRLLGLF---PHDLSKYET-A-KIVSRKLVYRGYYFRREKETC 50
+ R E + L + P +E A ++ ++++
Sbjct: 144 LIRIVSGLELSDTKQKGKKFL-VIAYEP-----FENIAIELPPNEILFSENNDMDNNNDG 197
Query: 51 NKKIMWKCT 59
++ KCT
Sbjct: 198 VDELNKKCT 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.99
Identities = 19/175 (10%), Positives = 50/175 (28%), Gaps = 42/175 (24%)
Query: 67 HSRIHTFDGHI----IFNSDKHNHLPHTMESDLHPSSEPTLALPSGSESNDCHDNPADKK 122
+ D I + N + + ++ L+ + S + + +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 123 KSTIM--KTYSKLSLTKNIRLNLQNITKPLNGNDINNFEVWEGLNIVKTGRVMLGATNPA 180
++ K Y L L L ++ N + W N+ + +++L
Sbjct: 234 LRRLLKSKPYEN-CL-----LVL---------LNVQNAKAWNAFNL--SCKILL------ 270
Query: 181 DSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIG----WTNASES 231
T R + + + + + + ++ T EV + +
Sbjct: 271 -----TTR-FKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 4.4
Identities = 23/176 (13%), Positives = 47/176 (26%), Gaps = 56/176 (31%)
Query: 84 HNHLPHTME--SDLHPSSEPTL------ALPSGSESNDCHDNP--------------ADK 121
H L H + + + L LP +E D P +
Sbjct: 13 HGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 122 KKSTIMKTYSKLSLTKNIRLNLQNITKP-LNGNDINNFEVWEGLNIVKTGRVMLGATNPA 180
+ + + + ++ + L L L GNDI+ +++
Sbjct: 72 VEPSKVGQFDQV-----LNLCLTEFENCYLEGNDIHAL----------AAKLLQENDTTL 116
Query: 181 DSAPGTVRG--DLCIQVGRNIMHGSDS--VESAKKE----IAL---------WFTE 219
++ I R S+S + + +A+ +F E
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE 172
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay,
zinc-finger, ATP-binding, metal-BIN UPF2, UPF1,
helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A
2iyk_A
Length = 800
Score = 27.2 bits (60), Expect = 5.2
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 57 KCTSYSRTKCHSRIHTFDGHIIFNSDKHNHLPHTMESDLHPSS 99
C + + C+ R +T HI+ + + E LH
Sbjct: 22 YCNTSKKWFCNGRGNTSGSHIVNHLVRAKC----KEVTLHKDG 60
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 27.2 bits (60), Expect = 6.5
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 57 KCTSYSRTKCHSRIHTFDGHIIFNSDKHNHLPHTMESDLHPSS 99
KC S + C+++ T HI+ + +H LHP S
Sbjct: 27 KCNSCKKWFCNTKNGTSSSHIVNHLVLSHH----NVVSLHPDS 65
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 6.6
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 112 NDCHDNPADKKKSTIMKTYSKLSLT-KNIRLNLQNITKPLNGNDINNFEVWE 162
+ + P+ + K T+ SK+ + ++L L + P G+ ++N W+
Sbjct: 58 SPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 26.7 bits (58), Expect = 9.1
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Query: 85 NHLPHTMESDLHPSSEPTLAL---PSGSESNDCHDNPADKKKSTIMKTYSKLSLTKNIRL 141
+H H S L P + +E+ K + + L +N R+
Sbjct: 4 SHHHHHHSSGLVPRGSHMASAVVQEVSAEAQAPAVVKNPPKLALKIDRADVNQLPRNFRM 63
Query: 142 NLQNITKPLNGNDINNFEVWEGLNI 166
+ + + +N+
Sbjct: 64 GSDKYVGVTKTGIMPTRKGMDTMNV 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.403
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,451,074
Number of extensions: 185358
Number of successful extensions: 528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 43
Length of query: 235
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 144
Effective length of database: 4,160,982
Effective search space: 599181408
Effective search space used: 599181408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)