RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10009
(235 letters)
>d3bbba1 d.58.6.1 (A:2-151) Nucleoside diphosphate kinase, NDK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 150
Score = 98.5 bits (245), Expect = 9e-27
Identities = 51/74 (68%), Positives = 64/74 (86%)
Query: 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEK 220
WEGLN+VKTGRVMLG TNPADS PGT+RGD CIQVGRNI+HGSDSV+SA+KEI+LWF +
Sbjct: 77 WEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPE 136
Query: 221 EVIGWTNASESWIY 234
E++ + + + W+Y
Sbjct: 137 ELVDYKSCAHDWVY 150
>d1s57a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana), chloroplast NDK2 [TaxId:
3702]}
Length = 153
Score = 94.3 bits (234), Expect = 6e-25
Identities = 38/75 (50%), Positives = 54/75 (72%)
Query: 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEK 220
WEG+ +V + R ++G T+P + PGT+RGDL +Q GRNI+HGSDS E+ K+EI LWF E
Sbjct: 79 WEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEG 138
Query: 221 EVIGWTNASESWIYE 235
E+ W +A +W+ E
Sbjct: 139 ELCKWDSALATWLRE 153
>d1zs6a1 d.58.6.1 (A:18-169) Nucleoside diphosphate kinase, NDK
{Human(Homo sapiens), NDK3 [TaxId: 9606]}
Length = 152
Score = 91.2 bits (226), Expect = 6e-24
Identities = 44/75 (58%), Positives = 64/75 (85%)
Query: 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEK 220
W+GL++V+T R ++GATNPAD+ PGT+RGD CI+VG+N++HGSDSVESA++EIALWF
Sbjct: 78 WQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRAD 137
Query: 221 EVIGWTNASESWIYE 235
E++ W +++ W+YE
Sbjct: 138 ELLCWEDSAGHWLYE 152
>d1nb2a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Bacillus
halodenitrificans [TaxId: 1482]}
Length = 149
Score = 89.4 bits (221), Expect = 4e-23
Identities = 41/82 (50%), Positives = 51/82 (62%)
Query: 153 NDINNFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKE 212
+ VWEGLN T R +LGATNP+D+APGT+RGD + GRN +HGSDS SA KE
Sbjct: 67 SGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKE 126
Query: 213 IALWFTEKEVIGWTNASESWIY 234
I +F E T A+ + IY
Sbjct: 127 IGAFFGGGEAASGTPAAAADIY 148
>d1xiqa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 149
Score = 89.3 bits (221), Expect = 4e-23
Identities = 37/74 (50%), Positives = 53/74 (71%)
Query: 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEK 220
WEG+++VK GR ++G TNP S GT+RGD C++V +N++HGSDSV SA KEI +WF +
Sbjct: 75 WEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAE 134
Query: 221 EVIGWTNASESWIY 234
E+ W + + WI
Sbjct: 135 ELTQWKHHMKEWIC 148
>d2az3a1 d.58.6.1 (A:4-155) Nucleoside diphosphate kinase, NDK
{Archaeon Halobacterium salinarum [TaxId: 2242]}
Length = 152
Score = 88.9 bits (220), Expect = 6e-23
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESA--KKEIALWFT 218
WEG + + R ++GAT+ D+APGT+RGD +G N++HGSD + ++EIAL+F
Sbjct: 76 WEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFD 135
Query: 219 EKEVIGWTNASESWIYE 235
+ E++ W + +W+YE
Sbjct: 136 DDELVDWDRDASAWVYE 152
>d1u8wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 149
Score = 88.6 bits (219), Expect = 6e-23
Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Query: 157 NFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALW 216
+WEG N+V TGR ++GATNPA S PGT+RGD I +GRN++HGSDSVESA+KEIALW
Sbjct: 71 VAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALW 130
Query: 217 FTEKEVIGWTNASESWIYE 235
F + + W ++ W+YE
Sbjct: 131 FPDGP-VNWQSSVHPWVYE 148
>d2dyaa1 d.58.6.1 (A:6-158) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 153
Score = 87.0 bits (215), Expect = 3e-22
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 153 NDINNFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGR---NIMHGSDSVESA 209
V EG V+ R M GAT+P D+APGT+RGD ++V N++H SDS ESA
Sbjct: 68 KTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESA 127
Query: 210 KKEIALWFTEKEVIGWTNASESWIYE 235
++EI+L+F +E+ + A++ W Y+
Sbjct: 128 EREISLFFKPEELFEYPRAAD-WFYK 152
>d1w7wa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Pea
(Pisum sativum) [TaxId: 3888]}
Length = 151
Score = 86.6 bits (214), Expect = 4e-22
Identities = 42/74 (56%), Positives = 56/74 (75%)
Query: 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEK 220
WEG ++ GR ++GAT+P SAPGT+RGDL + VGRNI+HGSD E+AK EI LWF +
Sbjct: 77 WEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPE 136
Query: 221 EVIGWTNASESWIY 234
E++ +T+ SE WIY
Sbjct: 137 ELVSFTSNSEKWIY 150
>d1hlwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Dictyostelium discoideum [TaxId: 44689]}
Length = 150
Score = 86.6 bits (214), Expect = 4e-22
Identities = 39/79 (49%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 157 NFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALW 216
V+EG +V + R+M+G TNP SAPG++RGD + VGRNI+ GSDSVESA +EIALW
Sbjct: 73 VAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVESANREIALW 132
Query: 217 FTEKEVIGWTNASESWIYE 235
F +E++ +YE
Sbjct: 133 FKPEELLTEVKP-NPNLYE 150
>d1wkja1 d.58.6.1 (A:1-137) Nucleoside diphosphate kinase, NDK
{Thermus thermophilus [TaxId: 274]}
Length = 137
Score = 85.8 bits (212), Expect = 5e-22
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 157 NFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALW 216
V EG +V R M+GAT+P D+ PGT+RGD + N++HGS ++E A++EIAL+
Sbjct: 71 VAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALF 130
Query: 217 FTEKEVI 223
F +E++
Sbjct: 131 FRPEELL 137
>d1xqia1 d.58.6.1 (A:14-195) Nucleoside diphosphate kinase, NDK
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 182
Score = 85.5 bits (211), Expect = 2e-21
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
Query: 157 NFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCI----------QVGRNIMHGSDSV 206
V +G V+ R ++G T+P + PGT+RGD I +V N++H SDS
Sbjct: 105 VVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSP 164
Query: 207 ESAKKEIALWFTEKEVI 223
A++EI WF E+EV+
Sbjct: 165 SEAEREIRFWFREEEVL 181
>d1ehwa_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK {Human
(Homo sapiens), NDK4 [TaxId: 9606]}
Length = 143
Score = 83.5 bits (206), Expect = 4e-21
Identities = 34/69 (49%), Positives = 49/69 (71%)
Query: 157 NFEVWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALW 216
VWEG N+V+ R M+G T+ A++APGT+RGD + + RN++H SDSVE A++EI LW
Sbjct: 75 VAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLW 134
Query: 217 FTEKEVIGW 225
F E++ W
Sbjct: 135 FQSSELVSW 143
>d1nhkl_ d.58.6.1 (L:) Nucleoside diphosphate kinase, NDK
{Myxococcus xanthus [TaxId: 34]}
Length = 143
Score = 82.0 bits (202), Expect = 2e-20
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 7/76 (9%)
Query: 160 VWEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWFTE 219
V EG N V R ++GATNPA +A GT+R D + +N +HGSDS+E+AK EIA +F E
Sbjct: 75 VLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRE 134
Query: 220 KEVIGWTNASESWIYE 235
E+ S+ Y+
Sbjct: 135 TEIH-------SYPYQ 143
>d1k44a_ d.58.6.1 (A:) Nucleoside diphosphate kinase, NDK
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 135
Score = 76.2 bits (187), Expect = 2e-18
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 156 NNFEVWEGLNIVKTGRVMLGATNPADSA-PGTVRGDLCIQVGRNIMHGSDSVESAKKEIA 214
+ EG + R + G T+P +A PGT+RGD ++ N++HGSDS ESA++EIA
Sbjct: 70 VVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIA 129
Query: 215 LWF 217
LWF
Sbjct: 130 LWF 132
>d2b8qa1 d.58.6.1 (A:2-129) Nucleoside diphosphate kinase, NDK
{Mimivirus [TaxId: 315393]}
Length = 128
Score = 65.1 bits (158), Expect = 3e-14
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 161 WEGLNIVKTGRVMLGATNPADSAPGTVRGDLCIQVGRNIMHGSDSVESAKKEIALWF 217
+EG + + R + G PGT+RGDL + N++H SDS +SA EI++WF
Sbjct: 75 YEGTDAISKIRRLQGNILT----PGTIRGDLANDIRENLIHASDSEDSAVDEISIWF 127
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 25.9 bits (56), Expect = 4.3
Identities = 12/160 (7%), Positives = 37/160 (23%), Gaps = 6/160 (3%)
Query: 35 KLVYRGYYFRREKETCNKKIMWKCTSYSRTKC--HSRIHTFDGHIIFNSDKHNHLPHTME 92
K+ Y + +R + R + + +
Sbjct: 72 KVWYADFVYRYSGSDLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASEFFEGPVIVEIGH 131
Query: 93 SDLHPSSEPTLALPSGSESNDCHDNPADKKKSTIMKTYSKLSLTKNIRLNLQNITKPLNG 152
+ ++ + + + D + + K+ L++ ++ +I +
Sbjct: 132 TGVYEDLLKEIPKDLHEKVLNLIDTKNLAEIEFLSHM-KKIDLSRVEKIIEDSIYRRSPE 190
Query: 153 NDINNFEVWEGLNIVKTGRVMLGATNPADSA---PGTVRG 189
+ + + L P S R
Sbjct: 191 HLKTMDLPLSVREDLLSASSFLQEKFPTVSVEIDLTLART 230
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 23.6 bits (51), Expect = 4.8
Identities = 5/28 (17%), Positives = 8/28 (28%)
Query: 45 REKETCNKKIMWKCTSYSRTKCHSRIHT 72
+ + + S H R HT
Sbjct: 9 ERRRYKCDECGKSFSHSSDLSKHRRTHT 36
>d1cc1l_ e.18.1.1 (L:) Nickel-iron hydrogenase, large subunit
{Desulfomicrobium baculatum [TaxId: 899]}
Length = 487
Score = 25.5 bits (55), Expect = 6.0
Identities = 27/162 (16%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 68 SRIHTFDGHIIFNSDKHNHLPHTMESDLHPSSEPTLALPSGSESNDCHDNPADKKKSTIM 127
+ FD ++ H+ H+ LH S T P + P K K +
Sbjct: 262 GKDEEFDSKLVKEYVGHSFFDHSAPGGLHYSVGETNPNPDKPGAYSFVKAPRYKDKPCEV 321
Query: 128 KTYSKLSLT-KNIRLNLQNITKPLNGNDINNFEVWEGLNIVKTGRVMLGATNPADSAPGT 186
+++ + + Q + K L G + F GR +L A +A
Sbjct: 322 GPLARMWVQNPELSPVGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLRAEETWLTA--- 378
Query: 187 VRGDLCIQVGRNIMHGSDSVESAKKEIALWFTEKEVIGWTNA 228
+ + + G+++ ++ E G+T A
Sbjct: 379 ---VAVEKWLKQVQPGAETYVKSE-----IPDAAEGTGFTEA 412
>d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste
dyscritum) [TaxId: 6436]}
Length = 113
Score = 24.5 bits (53), Expect = 6.3
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 21 HDLSKYETAKIVSRKLVYRGYYFRREKETCNKKIMWKCTSYSRTKCHSRIH 71
LS+ + A ++ G +F E++ + + + Y+ H + H
Sbjct: 33 LLLSQADNADHLNELRRCTGKHFLNEQQ------LMQASQYAGYAEHKKAH 77
>d1m9sa4 b.34.11.1 (A:552-629) Internalin B, C-terminal domains
{Listeria monocytogenes [TaxId: 1639]}
Length = 78
Score = 23.6 bits (51), Expect = 9.8
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 206 VESAKKEIALWF---TEKEVIGWTNAS 229
A E LW+ T IGWT A+
Sbjct: 47 DCQATIEGQLWYRIRTSSTFIGWTKAA 73
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand
binding core {Rat (Rattus norvegicus), GluR5 [TaxId:
10116]}
Length = 246
Score = 24.8 bits (52), Expect = 10.0
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 8/118 (6%)
Query: 1 MFREQDSPSPGNDRLLGLFPHDLSKYETAKIVSRKLVYRGYYFRREKETCNKKIMWKCTS 60
M+R+ D P GNDR G + DL K +S L + Y +
Sbjct: 14 MYRKSDKPLYGNDRFEG-YCLDL-----LKELSNILGFL--YDVKLVPDGKYGAQNDKGE 65
Query: 61 YSRTKCHSRIHTFDGHIIFNSDKHNHLPHTMESDLHPSSEPTLALPSGSESNDCHDNP 118
++ H D + + + S + ++ +S D
Sbjct: 66 WNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPIDSADDLAKQ 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.403
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 872,981
Number of extensions: 38297
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 28
Length of query: 235
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 152
Effective length of database: 1,268,006
Effective search space: 192736912
Effective search space used: 192736912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)