BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10014
(72 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase
Gp78
Length = 168
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 18 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 59
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br
Domain Of Gp78 At 1.8-A Resolution
Length = 164
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 14 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 55
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 17 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 58
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 79.0 bits (193), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 20 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 61
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 21 NCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL NP EG AG +++ + + WE LI GP T +EGGVF A
Sbjct: 25 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAH 70
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L + P GI+AGP +E N F W+ LI GP T + GVF AK
Sbjct: 15 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAK 57
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E+T++PP AGP +N +EW + I GP G+ +EGGVF
Sbjct: 13 AEITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVF 52
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
E2 E1
Length = 194
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
++T++PP AGP +N +EW + I GP G+ +EGGVF
Sbjct: 58 ADITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVF 97
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L+ +PP AGPV ++ F W+A I GPE + + GGVF
Sbjct: 32 DLSKDPPTNCSAGPVGDD-MFHWQATIMGPEDSPYSGGVF 70
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 30 DLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVF 68
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 8 TGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
T PSR L + + +L +PP G+ P E+N WEA+I GP+ T FE G F
Sbjct: 2 TTPSRRRL---MRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTF 53
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVF 52
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 153
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 18 DLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVF 56
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 8 TGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
T PSR L + + +L +PP G+ P E+N WEA+I GP+ T FE G F
Sbjct: 5 TTPSRRRL---MRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTF 56
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 18 DLQRDPPAHCRAGPVGDD-LFHWQATIMGPPDSAYQGGVF 56
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 15 LSPEIINCV-----ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L P II V LT +PP+GI P NEE+ + + I GPEGT + GG+F K
Sbjct: 10 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMK 65
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 29 PPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
P +G AG V++ + ++WE L+ GP T +EGG F A
Sbjct: 19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKA 55
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 22 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 60
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 17 DLQRDPPAQCSAGPVGDD-LFHWQATIMGPSDSPYQGGVF 55
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 11 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 49
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 30 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 68
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 11 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 49
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 22 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 60
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 52
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 30 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 68
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 15 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 53
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCRAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 52
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b,
Wild-Type
Length = 149
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 52
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 52
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 8 TGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+ P+R L + + L +PP G+ P +E N +W A+I GPEGT FE G F
Sbjct: 2 STPARRRL---MRDFKRLQEDPPVGVSGAP-SENNIMQWNAVIFGPEGTPFEDGTF 53
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 17 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 55
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 20 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 58
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 52
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 52
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E+ +PP AGPV ++ F W A ITGP+ + ++GG+F
Sbjct: 15 EIQQDPPCNCSAGPVGDD-IFHWTATITGPDDSPYQGGLF 53
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1
(uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And
Atp/mg
Length = 163
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + + GGVF
Sbjct: 11 ADLGKDPPSSSSAGPVGDD-LFHWQATIMGPADSPYAGGVF 50
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 34 IAGPVNEENFFEWEALITGPEGTCFEGGVF 63
I + + NFFEW I GPEGT +EGG F
Sbjct: 43 IDAHIKDSNFFEWVGFIKGPEGTPYEGGHF 72
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L PP GI+A PV EN+ + LI GP+GT +EGG +
Sbjct: 13 LANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTY 50
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L PP GI+A PV EN+ + LI GP+GT +EGG +
Sbjct: 13 LANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTY 50
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPVGDD-MFHWQATAMGPNDSPYQGGVF 52
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 15 DLGRDPPAQCSAGPVGDD-LFHWQATIMGPPESPYQGGVF 53
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ + W+A I GP + + GGVF
Sbjct: 13 DLERDPPTSCSAGPVGDD-LYHWQASIMGPADSPYAGGVF 51
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L +PP GI P + N W A+I GP+ T ++GG F
Sbjct: 15 RLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTF 53
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDK 68
L P EG V+E + + WE I GP T +EGG F A+ K
Sbjct: 16 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 59
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDK 68
L P EG V+E + + WE I GP T +EGG F A+ K
Sbjct: 19 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 28 NPPEGIIAG--PVNEENFFEWEALITGPEGTCFEGGVF 63
NP GII P++E + +WEA+I+GP T +E F
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQF 67
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 28 NPPEGIIAG--PVNEENFFEWEALITGPEGTCFEGGVF 63
NP GII P++E + +WEA+I+GP T +E F
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQF 67
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 28 NPPEGIIAG--PVNEENFFEWEALITGPEGTCFEGGVF 63
NP GII P++E + +WEA+I+GP T +E F
Sbjct: 30 NPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQF 67
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell
Survival And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 30 PEGIIAGPVNEEN----FFEWEALITGPEGTCFEGGVFP 64
P G A PV + + +WEA I G EGT + GGV+P
Sbjct: 21 PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 59
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 30 PEGIIAGPVNEEN----FFEWEALITGPEGTCFEGGVFP 64
P G A PV + + +WEA I G EGT + GGV+P
Sbjct: 23 PFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 8 TGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+ P+R L + E + P G+ A P+ +N W A+I GP T +E G F
Sbjct: 2 STPARRRLMRDFKRMKE---DAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTF 53
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 21 NCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+ + + +P I A P+ N EW ++ GPE T +EGG + K
Sbjct: 22 DYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGK 66
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +P GI A P +++N ++ I GPE + +E G+F
Sbjct: 14 KLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIF 52
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +P GI A P +++N ++ I GPE + +E G+F
Sbjct: 14 KLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIF 52
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +P GI A P +++N ++ I GPE + +E G+F
Sbjct: 14 KLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIF 52
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +P GI A P +++N ++ I GPE + +E G+F
Sbjct: 16 KLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIF 54
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 23 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 21 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 58
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 21 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 58
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation
Revealed By A Complex Between Ubiquitin Conjugating
Enzyme Ubc9 And Rangap1
Length = 159
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 22 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 59
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 24 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 24 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of
E1 In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 21 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 58
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 24 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 24 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 23 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 24 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 30 PEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
P G +A P N WE I G +GT +EGG+F
Sbjct: 26 PFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 63
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L P GI A P +E N + +I GP+ + FEGG F
Sbjct: 14 RLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTF 52
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L P GI A P +E N + +I GP+ + FEGG F
Sbjct: 12 RLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTF 50
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L P GI A P +E N + +I GP+ + FEGG F
Sbjct: 16 RLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTF 54
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 10 PSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
P RI I L P GI A P +E N + +I GP+ + FEGG F
Sbjct: 10 PRRI-----IKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTF 57
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
P1 Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The
C2 Space Group
Length = 155
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L P GI A P +E N + +I GP+ + FEGG F
Sbjct: 17 RLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTF 55
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 32 GIIAGPVNEENFFEWEALITGPEGTCFEG 60
GI A P + +N F+W A + GP+ T +E
Sbjct: 28 GITAFP-DGDNLFKWVATLDGPKDTVYES 55
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 42 NFFEWEALITGPEGTCFEGGVF 63
+ W I GP GT +EGG F
Sbjct: 73 DIHRWRGFIAGPLGTPYEGGHF 94
>pdb|1YQF|A Chain A, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|B Chain B, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|C Chain C, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|D Chain D, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|E Chain E, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|F Chain F, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
Length = 203
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 2 KRIKFYTGPSRIELSPEIINCV 23
KR + YTGP EL +++NCV
Sbjct: 141 KRNELYTGPLVHELDYDLLNCV 162
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 EENFFEWEALITGPEGTCFEGGVFPAKDKI 69
+ENF E I GP T +EGG + + KI
Sbjct: 86 DENFTELRGEIAGPPDTPYEGGRYQLEIKI 115
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 EENFFEWEALITGPEGTCFEGGVFPAKDKI 69
+ENF E I GP T +EGG + + KI
Sbjct: 50 DENFTELRGEIAGPPDTPYEGGRYQLEIKI 79
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 EENFFEWEALITGPEGTCFEGGVFPAKDKI 69
+ENF E I GP T +EGG + + KI
Sbjct: 37 DENFTELRGEIAGPPDTPYEGGRYQLEIKI 66
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 EENFFEWEALITGPEGTCFEGGVFPAKDKI 69
+ENF E I GP T +EGG + + KI
Sbjct: 34 DENFTELRGEIAGPPDTPYEGGRYQLEIKI 63
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 40 EENFFEWEALITGPEGTCFEGGVFPAKDKI 69
+ENF E I GP T +EGG + + KI
Sbjct: 35 DENFTELRGEIAGPPDTPYEGGRYQLEIKI 64
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 15 LSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEG 55
L+ ++ + LT++ + AG N+ +F +WE I GP+G
Sbjct: 529 LNFDLCKTMALTVSLLRHMAAGE-NQPSFIKWEKSIAGPDG 568
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 15 LSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEG 55
L+ ++ + LT++ + AG N+ +F +WE I GP+G
Sbjct: 529 LNFDLCKTMALTVSLLRHMAAGE-NQPSFIKWEKSIAGPDG 568
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 25.8 bits (55), Expect = 5.6, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 15 LSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEG 55
L+ ++ + LT++ + AG N+ +F +WE I GP+G
Sbjct: 529 LNFDLCKTMALTVSLLRHMAAGE-NQPSFIKWEKSIAGPDG 568
>pdb|1SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With Dana
pdb|1SLL|A Chain A, Sialidase L From Leech Macrobdella Decora
pdb|2SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac, The Reaction Product
pdb|3SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2,7-
Anhydro-Neu5ac Prepared By Soaking With 3'-Sialyllactose
pdb|4SLI|A Chain A, Leech Intramolecular Trans-Sialidase Complexed With 2-
Propenyl-Neu5ac, An Inactive Substrate Analogue
Length = 679
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 4 IKFYTGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFE---- 59
IK Y+ E E+I +T AG V E N+F +L+T GT
Sbjct: 175 IKVYSNALSDE---ELIQATGVTTYGENIFYAGDVTESNYFRIPSLLTLSTGTVISAADA 231
Query: 60 --GGVFPAKDKI 69
GG +K KI
Sbjct: 232 RYGGTHDSKSKI 243
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.143 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,530,828
Number of Sequences: 62578
Number of extensions: 92604
Number of successful extensions: 240
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 93
length of query: 72
length of database: 14,973,337
effective HSP length: 42
effective length of query: 30
effective length of database: 12,345,061
effective search space: 370351830
effective search space used: 370351830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)