BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10014
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17QG5|UB2G2_BOVIN Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2
SV=1
Length = 165
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 15 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 56
>sp|Q5RF84|UB2G2_PONAB Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2
SV=1
Length = 165
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 15 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 56
>sp|P60605|UB2G2_MOUSE Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1
SV=1
Length = 165
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 15 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 56
>sp|P60604|UB2G2_HUMAN Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1
SV=1
Length = 165
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 15 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPA 56
>sp|O00102|UBC7_SCHPO Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ubc7 PE=2 SV=2
Length = 166
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
ELT N P+GI AGP NE++FF W+ LI GP+GT FEGG++PA
Sbjct: 16 ELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPA 57
>sp|Q9Y818|UBC15_SCHPO Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ubc15 PE=3 SV=1
Length = 167
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
E+ NPP+G G V++++ FEWE +I GPE T +EGG F A
Sbjct: 16 EIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHA 57
>sp|P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1
PE=2 SV=3
Length = 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 21 NCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL NP EG AG +++ + + WE LI GP T +EGGVF A
Sbjct: 13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAH 58
>sp|P62254|UB2G1_MOUSE Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2
SV=3
Length = 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 21 NCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL NP EG AG +++ + + WE LI GP T +EGGVF A
Sbjct: 13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAH 58
>sp|P62253|UB2G1_HUMAN Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1
SV=3
Length = 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 21 NCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL NP EG AG +++ + + WE LI GP T +EGGVF A
Sbjct: 13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAH 58
>sp|Q4R5Y8|UB2G1_MACFA Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis
GN=UBE2G1 PE=2 SV=1
Length = 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 21 NCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL NP EG AG +++ + + WE LI GP T +EGGVF A
Sbjct: 13 QLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAH 58
>sp|Q9C9Y7|UBC12_ARATH Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis
thaliana GN=UBC12 PE=2 SV=1
Length = 149
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
++ +PP AGPV EE+ F W+A I GP + + GGVF
Sbjct: 12 DMQRHPPANCSAGPVAEEDIFHWQATIMGPHDSPYSGGVF 51
>sp|Q02159|UBC7_YEAST Ubiquitin-conjugating enzyme E2 7 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBC7 PE=1 SV=1
Length = 165
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L + P GI+AGP +E N F W+ LI GP T + GVF AK
Sbjct: 15 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAK 57
>sp|P52483|UB2E3_MOUSE Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1
SV=2
Length = 207
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E+T++PP AGP + N +EW + I GP G+ +EGGVF
Sbjct: 71 AEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVF 110
>sp|Q969T4|UB2E3_HUMAN Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1
SV=1
Length = 207
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E+T++PP AGP + N +EW + I GP G+ +EGGVF
Sbjct: 71 AEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVF 110
>sp|Q2T9X7|UB2E3_BOVIN Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2
SV=1
Length = 207
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E+T++PP AGP + N +EW + I GP G+ +EGGVF
Sbjct: 71 AEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVF 110
>sp|Q91W82|UB2E2_MOUSE Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2
SV=1
Length = 201
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 5 KFYTGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
K T RI+ E+T++PP AGP + N +EW + I GP G+ +EGGVF
Sbjct: 52 KLSTSAKRIQK-----ELAEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVF 104
>sp|Q96LR5|UB2E2_HUMAN Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1
SV=1
Length = 201
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 5 KFYTGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
K T RI+ E+T++PP AGP + N +EW + I GP G+ +EGGVF
Sbjct: 52 KLSTSAKRIQK-----ELAEITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVF 104
>sp|P52485|UBCD2_DROME Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster
GN=UbcD2 PE=2 SV=1
Length = 232
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 3 RIKFYTGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGV 62
RI G S + E+ E+T++PP AGP +N +EW + I GP G+ +EGGV
Sbjct: 79 RISRALGTSAKRIQKEL---AEITLDPPPNCSAGP-KGDNLYEWVSTILGPPGSVYEGGV 134
Query: 63 F 63
F
Sbjct: 135 F 135
>sp|P52482|UB2E1_MOUSE Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2
SV=1
Length = 193
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
++T++PP AGP + N +EW + I GP G+ +EGGVF
Sbjct: 57 ADITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVF 96
>sp|P51965|UB2E1_HUMAN Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1
SV=1
Length = 193
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
++T++PP AGP +N +EW + I GP G+ +EGGVF
Sbjct: 57 ADITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVF 96
>sp|Q9LJD7|COP10_ARATH Constitutive photomorphogenesis protein 10 OS=Arabidopsis
thaliana GN=COP10 PE=1 SV=1
Length = 182
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
EL I+PP AGP +N + W A I GP GT +EGG+F
Sbjct: 46 AELNIDPPPDCSAGP-KGDNLYHWIATIIGPSGTPYEGGIF 85
>sp|C3Z724|UBE2S_BRAFL Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae
GN=BRAFLDRAFT_259979 PE=3 SV=1
Length = 213
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 8 TGPSRIE-LSPEIINCV-----ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGG 61
+G S +E LSP+II V +L +PPEG+ P NE++ + +A I GP GT +EGG
Sbjct: 2 SGSSNVENLSPQIIRQVAKEVLDLANHPPEGVKVFP-NEQDITDVQATIEGPGGTPYEGG 60
Query: 62 VFPAK 66
F K
Sbjct: 61 QFKIK 65
>sp|A5PKP9|UB2D4_XENLA Ubiquitin-conjugating enzyme E2 D4 OS=Xenopus laevis GN=ube2d4
PE=1 SV=1
Length = 147
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
++L +PP AGPV E+ F W+A I GP + F+GGVF
Sbjct: 11 MDLQRDPPAQCSAGPVGED-LFHWQATIMGPNDSPFQGGVF 50
>sp|P0C8G4|UBC_ASFP4 Ubiquitin-conjugating enzyme E2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=UBC PE=2 SV=1
Length = 217
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
LT NP E VNE N EW+ ++ GP T +EGG+F AK
Sbjct: 12 HLTENPSENFKVS-VNENNMTEWDVILKGPADTLYEGGLFKAK 53
>sp|P25869|UBC_ASFM2 Ubiquitin-conjugating enzyme E2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1
Length = 213
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L +NP E VNE+N EW+ ++ GP T +EGG+F AK
Sbjct: 13 LIVNPSEHFKIS-VNEDNLTEWDVILKGPPDTLYEGGLFKAK 53
>sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7
PE=2 SV=1
Length = 166
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 28 NPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+P +G AG V+E+N FEW I GP T +EGG F A
Sbjct: 19 HPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNA 56
>sp|Q16763|UBE2S_HUMAN Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1
SV=2
Length = 222
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 15 LSPEIINCV-----ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L P II V LT +PP+GI P NEE+ + + I GPEGT + GG+F K
Sbjct: 8 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMK 63
>sp|P0C8G3|UBC_ASFK5 Ubiquitin-conjugating enzyme E2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=UBC PE=2 SV=1
Length = 218
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
LT NP E VNE N EW+ ++ GP T +EGG+F AK
Sbjct: 13 LTENPSEHFKVS-VNENNLTEWDVILKGPSDTFYEGGLFKAK 53
>sp|Q6FQK7|UBC6_CANGA Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=UBC6 PE=3 SV=1
Length = 246
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 8 TGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
T ++ L+ E VE NPP IIA P NEEN EW +I+GP T ++GG +
Sbjct: 3 TKQAQKRLTKEYKMMVE---NPPPFIIARP-NEENILEWHYVISGPPDTPYDGGQY 54
>sp|Q1RML1|UBE2S_BOVIN Ubiquitin-conjugating enzyme E2 S OS=Bos taurus GN=UBE2S PE=2
SV=2
Length = 223
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 15 LSPEIINCV-----ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L P II V LT +PP+GI P NEE+ + + I GPEGT + GG+F K
Sbjct: 8 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMK 63
>sp|D3ZDK2|UB2D1_RAT Ubiquitin-conjugating enzyme E2 D1 OS=Rattus norvegicus GN=Ube2d1
PE=1 SV=1
Length = 147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVF 50
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2
SV=1
Length = 147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVF 50
>sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1
SV=1
Length = 147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVF 50
>sp|Q2TA10|UB2D1_BOVIN Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2
SV=1
Length = 147
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLQRDPPAHCSAGPVGDD-LFHWQATIMGPPDSAYQGGVF 50
>sp|P52478|UBC1_CAEEL Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans
GN=ubc-1 PE=1 SV=1
Length = 192
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 8 TGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
T PSR L + + +L +PP G+ P E+N WEA+I GP+ T FE G F
Sbjct: 2 TTPSRRRL---MRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTF 53
>sp|Q42541|UBC13_ARATH Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana
GN=UBC13 PE=2 SV=1
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 28 NPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+P +G AG V+E+N FEW I GP T +EGG F A
Sbjct: 19 HPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYA 56
>sp|B5DFI8|UBE2S_RAT Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s
PE=2 SV=1
Length = 223
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 15 LSPEIINCV-----ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKI 69
L P II V LT +PP+GI P NEE+ + + I GPEGT + GG+F + K+
Sbjct: 8 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLF--RMKL 64
Query: 70 LL 71
LL
Sbjct: 65 LL 66
>sp|Q94F47|UBC28_ARATH Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana
GN=UBC28 PE=2 SV=1
Length = 148
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV E+ F W+A I GP + + GGVF
Sbjct: 12 DLQKDPPTSCSAGPV-AEDMFHWQATIMGPSDSPYSGGVF 50
>sp|Q6BYG4|UBC6_DEBHA Ubiquitin-conjugating enzyme E2 6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=UBC6 PE=3 SV=2
Length = 242
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+T+NPP + A P N+EN EW +ITGP T FE G +
Sbjct: 17 ITLNPPPYVSAKP-NDENILEWHYVITGPPHTPFEEGQY 54
>sp|P35132|UBC9_ARATH SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1
SV=1
Length = 148
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV E+ F W+A I GP + + GGVF
Sbjct: 12 DLQKDPPTSCSAGPV-AEDMFHWQATIMGPSDSPYSGGVF 50
>sp|Q921J4|UBE2S_MOUSE Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2
SV=1
Length = 223
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 15 LSPEIINCV-----ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L P II V LT +PP+GI P NEE+ + + I GPEGT + GG+F K
Sbjct: 8 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMK 63
>sp|A1L3K1|UB2SA_XENLA Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-a
PE=2 SV=1
Length = 223
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 15 LSPEIINCV-----ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L P II V LT +PP+GI P NEE+ + + I GPEGT + GG+F K
Sbjct: 8 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMK 63
>sp|P33296|UBC6_YEAST Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBC6 PE=1 SV=1
Length = 250
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 28 NPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
NPP I+A P NE+N EW +ITGP T ++GG +
Sbjct: 20 NPPPYILARP-NEDNILEWHYIITGPADTPYKGGQY 54
>sp|Q8S920|UBC5A_ORYSJ Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp.
japonica GN=UBC5A PE=2 SV=1
Length = 147
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV E+ F W+A I GP + + GGVF
Sbjct: 12 DLQKDPPTSCSAGPVGED-MFHWQATIMGPSDSPYAGGVF 50
>sp|P34477|UBC7_CAEEL Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis
elegans GN=ubc-7 PE=1 SV=1
Length = 164
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 29 PPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
P +G AG V++ + ++WE L+ GP T +EGG F A
Sbjct: 19 PVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKA 55
>sp|Q3ZCF7|UB2D3_BOVIN Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2
SV=1
Length = 147
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3
PE=2 SV=1
Length = 147
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
>sp|Q5R4V7|UB2D3_PONAB Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2
SV=1
Length = 147
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
>sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=1
SV=1
Length = 147
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
>sp|Q4R5N4|UB2D3_MACFA Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis
GN=UBE2D3 PE=2 SV=1
Length = 147
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLARDPPAQCSAGPVGDD-MFHWQATIMGPNDSPYQGGVF 50
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.143 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,460,748
Number of Sequences: 539616
Number of extensions: 1171605
Number of successful extensions: 1900
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1718
Number of HSP's gapped (non-prelim): 185
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)