Query psy10014
Match_columns 72
No_of_seqs 113 out of 1043
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 15:40:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 99.9 2.9E-22 6.3E-27 123.3 8.9 62 11-72 3-64 (153)
2 KOG0417|consensus 99.9 6.4E-22 1.4E-26 120.5 6.7 58 14-72 2-59 (148)
3 KOG0426|consensus 99.9 1.7E-21 3.8E-26 117.1 6.4 63 10-72 1-63 (165)
4 KOG0419|consensus 99.8 4.1E-20 9E-25 110.9 6.6 62 10-72 1-62 (152)
5 PTZ00390 ubiquitin-conjugating 99.8 1.4E-19 3.1E-24 111.3 8.4 58 14-72 3-60 (152)
6 PLN00172 ubiquitin conjugating 99.8 1.8E-19 3.8E-24 110.3 8.4 58 14-72 2-59 (147)
7 KOG0894|consensus 99.8 1.8E-19 3.9E-24 115.4 6.5 62 10-72 2-63 (244)
8 KOG0425|consensus 99.7 1.2E-17 2.5E-22 102.7 7.1 62 11-72 3-64 (171)
9 PF00179 UQ_con: Ubiquitin-con 99.7 1.4E-17 3.1E-22 100.5 7.1 56 17-72 1-56 (140)
10 cd00195 UBCc Ubiquitin-conjuga 99.7 7E-17 1.5E-21 97.6 8.0 56 16-72 2-57 (141)
11 smart00212 UBCc Ubiquitin-conj 99.7 4.8E-16 1E-20 94.3 8.0 57 16-72 1-57 (145)
12 KOG0421|consensus 99.7 3.8E-16 8.3E-21 95.1 6.9 59 13-72 29-87 (175)
13 KOG0424|consensus 99.6 1.2E-15 2.5E-20 92.8 7.3 63 10-72 1-67 (158)
14 KOG0418|consensus 99.6 8.4E-16 1.8E-20 96.8 6.7 61 10-72 1-64 (200)
15 KOG0428|consensus 99.6 5.1E-15 1.1E-19 96.8 5.1 59 12-72 10-68 (314)
16 KOG0427|consensus 99.5 1.1E-14 2.5E-19 87.6 5.5 62 9-72 11-72 (161)
17 KOG0423|consensus 99.4 2.8E-13 6E-18 84.9 3.0 66 5-71 2-67 (223)
18 KOG0422|consensus 99.3 8.1E-12 1.8E-16 75.8 4.3 59 13-72 2-60 (153)
19 KOG0416|consensus 99.1 4.1E-10 8.9E-15 70.4 6.4 56 13-72 3-58 (189)
20 KOG0895|consensus 98.9 6.5E-09 1.4E-13 78.3 6.8 69 2-71 271-339 (1101)
21 KOG0420|consensus 98.7 8.5E-08 1.8E-12 60.1 5.7 58 11-71 26-86 (184)
22 KOG0429|consensus 98.4 8.1E-07 1.7E-11 57.8 6.3 54 17-72 23-76 (258)
23 KOG0896|consensus 98.1 8.3E-06 1.8E-10 49.4 4.2 56 15-70 7-65 (138)
24 KOG0895|consensus 98.0 3.6E-06 7.8E-11 64.0 2.8 58 14-72 852-909 (1101)
25 smart00340 HALZ homeobox assoc 73.0 3.6 7.7E-05 20.3 1.8 15 14-28 20-34 (44)
26 PF04881 Adeno_GP19K: Adenovir 59.0 22 0.00047 21.7 3.6 29 41-69 45-74 (139)
27 PF11619 P53_C: Transcription 55.9 27 0.00059 18.8 3.3 23 42-71 3-25 (71)
28 KOG3357|consensus 51.7 6.1 0.00013 24.2 0.4 51 5-62 19-69 (167)
29 PF12065 DUF3545: Protein of u 47.3 15 0.00032 19.4 1.4 13 15-27 36-48 (59)
30 PHA02102 hypothetical protein 47.1 16 0.00036 19.6 1.6 33 14-46 13-45 (72)
31 PF01107 MP: Viral movement pr 45.8 74 0.0016 19.9 5.0 38 31-69 130-167 (189)
32 PF04314 DUF461: Protein of un 41.1 45 0.00097 19.0 3.0 27 45-71 77-103 (110)
33 PF09929 DUF2161: Uncharacteri 40.7 46 0.001 19.9 3.0 25 8-32 22-46 (118)
34 COG2847 Copper(I)-binding prot 39.1 84 0.0018 19.5 4.1 27 45-71 104-130 (151)
35 PF15586 Imm47: Immunity prote 34.7 99 0.0021 18.2 4.3 31 37-68 20-50 (116)
36 PLN03005 beta-fructofuranosida 34.3 1.2E+02 0.0025 22.8 4.7 37 24-64 411-452 (550)
37 PF08694 UFC1: Ubiquitin-fold 33.2 11 0.00025 23.4 -0.4 22 5-26 16-37 (161)
38 TIGR02422 protocat_beta protoc 32.6 45 0.00098 21.8 2.3 17 44-60 204-220 (220)
39 cd02860 Pullulanase_N_term Pul 31.6 95 0.0021 17.0 3.4 22 44-69 47-68 (100)
40 KOG1932|consensus 30.4 1.5E+02 0.0033 24.3 5.0 18 55-72 193-210 (1180)
41 PF14824 Sirohm_synth_M: Siroh 29.8 65 0.0014 14.6 2.2 17 9-25 13-29 (30)
42 COG5453 Uncharacterized conser 29.6 52 0.0011 18.8 1.9 14 56-69 36-50 (96)
43 PF14501 HATPase_c_5: GHKL dom 29.4 47 0.001 18.2 1.7 12 59-70 89-100 (100)
44 PF12075 KN_motif: KN motif; 28.7 25 0.00055 16.9 0.4 12 55-69 5-16 (39)
45 PF08203 RNA_polI_A14: Yeast R 28.2 43 0.00093 18.5 1.4 12 14-25 60-71 (76)
46 PF12259 DUF3609: Protein of u 26.5 54 0.0012 23.0 1.9 55 13-70 32-86 (361)
47 PF02922 CBM_48: Carbohydrate- 25.4 1.1E+02 0.0025 15.9 3.9 26 43-71 48-74 (85)
48 PF06675 DUF1177: Protein of u 25.3 42 0.00091 22.8 1.2 15 54-68 181-195 (276)
49 PF03366 YEATS: YEATS family; 24.2 22 0.00047 19.7 -0.3 12 44-55 2-13 (84)
50 PF10069 DICT: Sensory domain 24.2 1.6E+02 0.0035 17.3 3.5 12 43-54 108-119 (129)
51 KOG0680|consensus 23.4 1.7E+02 0.0038 20.9 3.9 46 13-59 332-377 (400)
52 PF13115 YtkA: YtkA-like 23.3 85 0.0019 16.6 2.0 14 58-71 64-77 (86)
53 PF05709 Sipho_tail: Phage tai 23.1 2E+02 0.0043 17.9 6.2 56 13-70 52-109 (249)
54 PF13026 DUF3887: Protein of u 22.8 1.6E+02 0.0034 17.0 3.1 25 45-72 73-97 (101)
55 PF14135 DUF4302: Domain of un 22.8 2.2E+02 0.0049 18.4 5.9 44 13-72 9-56 (235)
56 PF07691 PA14: PA14 domain; I 22.2 1.6E+02 0.0034 16.7 3.2 20 44-68 48-67 (145)
57 PF05015 Plasmid_killer: Plasm 22.1 1.6E+02 0.0034 16.3 6.0 41 11-51 23-70 (93)
58 KOG0280|consensus 21.3 1.6E+02 0.0035 20.7 3.4 34 32-66 225-260 (339)
59 PF13086 AAA_11: AAA domain; P 21.2 64 0.0014 19.6 1.4 10 47-56 19-28 (236)
60 KOG3470|consensus 21.1 83 0.0018 18.5 1.7 20 8-27 60-79 (107)
61 PF06305 DUF1049: Protein of u 20.8 99 0.0021 15.6 1.9 16 13-28 48-63 (68)
62 PF04447 DUF550: Protein of un 20.6 1.1E+02 0.0023 17.8 2.1 25 5-29 13-38 (100)
63 PF02970 TBCA: Tubulin binding 20.3 1.2E+02 0.0025 16.9 2.2 15 13-27 7-21 (90)
64 PF09943 DUF2175: Uncharacteri 20.0 1.3E+02 0.0028 17.5 2.3 20 45-66 2-21 (101)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.9e-22 Score=123.31 Aligned_cols=62 Identities=40% Similarity=0.701 Sum_probs=57.9
Q ss_pred ChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 11 SRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 11 s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
++.+.+||++|++.|+++++++|++.+.+++|+++|+++|.||++||||||+|++.|.||++
T Consensus 3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~ 64 (153)
T COG5078 3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPED 64 (153)
T ss_pred chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCC
Confidence 34599999999999999999999999987669999999999999999999999999999975
No 2
>KOG0417|consensus
Probab=99.86 E-value=6.4e-22 Score=120.46 Aligned_cols=58 Identities=36% Similarity=0.618 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 14 ELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 14 ~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
+.+||.||+++|+.++++||++.+ +++|+++|+++|.||.+||||||+|++.|.||++
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~-~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~ 59 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGP-VGDNLFHWQATILGPPGSPYEGGVFFLEIHFPED 59 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCC-CCCceeeEEEEEECCCCCCcCCCEEEEEEECCCC
Confidence 456999999999999999999997 4689999999999999999999999999999975
No 3
>KOG0426|consensus
Probab=99.85 E-value=1.7e-21 Score=117.05 Aligned_cols=63 Identities=57% Similarity=1.061 Sum_probs=60.0
Q ss_pred CChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 10 PSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 10 ~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
|+..+++||++|+++|..++|+||.+.|.+++|++.|.+.|+||++|||+||+|..++.||.+
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~D 63 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLD 63 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCC
Confidence 456799999999999999999999999999999999999999999999999999999999975
No 4
>KOG0419|consensus
Probab=99.82 E-value=4.1e-20 Score=110.87 Aligned_cols=62 Identities=37% Similarity=0.575 Sum_probs=58.6
Q ss_pred CChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 10 PSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 10 ~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
|+..|.+||+++++.|+++++.||+..|. ++|++.|.+.|.||++|||+||+|++.++|+++
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl~Ftee 62 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEE 62 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEEEcccc
Confidence 67789999999999999999999999996 579999999999999999999999999999874
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.81 E-value=1.4e-19 Score=111.29 Aligned_cols=58 Identities=28% Similarity=0.427 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 14 ELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 14 ~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
+.+||++|+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|++.|.||++
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~ 60 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQ 60 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEEECccc
Confidence 6799999999999999999999985 579999999999999999999999999999974
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.81 E-value=1.8e-19 Score=110.31 Aligned_cols=58 Identities=31% Similarity=0.507 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 14 ELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 14 ~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
+.+||++|+++|++++++++.+.+. ++|+++|+++|.||++|||+||.|++.|.||++
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~ 59 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSILFPPD 59 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEEECCcc
Confidence 4689999999999999999999985 579999999999999999999999999999974
No 7
>KOG0894|consensus
Probab=99.79 E-value=1.8e-19 Score=115.40 Aligned_cols=62 Identities=27% Similarity=0.428 Sum_probs=58.7
Q ss_pred CChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 10 PSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 10 ~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
.+..|.+||+|||+.|.++|.++|.+.| +++|+.+||..|.||++|||+||.|+.++.||++
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P-~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~e 63 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARP-NPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPE 63 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCC-CccceeeeEEEeeCCCCCCccCceeeeEEeCCCC
Confidence 4678999999999999999999999998 6789999999999999999999999999999975
No 8
>KOG0425|consensus
Probab=99.73 E-value=1.2e-17 Score=102.68 Aligned_cols=62 Identities=35% Similarity=0.543 Sum_probs=57.8
Q ss_pred ChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 11 SRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 11 s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
+.++..-|.+++++|++.+.+|+.+...|+.|+++|.|.|.||++|+|+||.|+..|.||.+
T Consensus 3 ~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~d 64 (171)
T KOG0425|consen 3 SSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQD 64 (171)
T ss_pred cchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCccc
Confidence 34577889999999999999999999998889999999999999999999999999999975
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.73 E-value=1.4e-17 Score=100.45 Aligned_cols=56 Identities=38% Similarity=0.662 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 17 PEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 17 Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
||++|+++|+++++.|+.+.+.+++|++.|+++|.||.+|||+||.|++.|.||++
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~ 56 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPD 56 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTT
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccc
Confidence 89999999999999999999975459999999999999999999999999999974
No 10
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.71 E-value=7e-17 Score=97.60 Aligned_cols=56 Identities=38% Similarity=0.641 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 16 SPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 16 ~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
+||++|+++|++++++|+.+.+. ++|+++|+++|.||++|||+||.|+++|.||++
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~ 57 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPED 57 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEEECCCc
Confidence 79999999999999999999985 569999999999999999999999999999975
No 11
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.67 E-value=4.8e-16 Score=94.32 Aligned_cols=57 Identities=39% Similarity=0.676 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 16 SPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 16 ~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
+||++|++++++++++|+.+.+.+++|++.|+++|.||++|||+||.|++.|.||++
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~ 57 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPD 57 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcc
Confidence 599999999999999999998865459999999999999999999999999999874
No 12
>KOG0421|consensus
Probab=99.66 E-value=3.8e-16 Score=95.14 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=55.4
Q ss_pred hhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 13 IELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
...+||++|+..|.....+||++.|. ++||+.|..+|.||.+|+|+|-.|++.+.||.+
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~ 87 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNN 87 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEEecCCC
Confidence 56899999999999999999999995 569999999999999999999999999999974
No 13
>KOG0424|consensus
Probab=99.64 E-value=1.2e-15 Score=92.76 Aligned_cols=63 Identities=29% Similarity=0.402 Sum_probs=57.8
Q ss_pred CChhhhhHHHHHHHHHhhCCCCCEEEeecC----CCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 10 PSRIELSPEIINCVELTINPPEGIIAGPVN----EENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 10 ~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~----~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
||..++.||+.|-+.+.++.+-|+.+.|.. ..|++.|++.|.||.+|+||||.|.+.|.||++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~d 67 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDD 67 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCcc
Confidence 577899999999999999999999999863 247999999999999999999999999999874
No 14
>KOG0418|consensus
Probab=99.64 E-value=8.4e-16 Score=96.76 Aligned_cols=61 Identities=38% Similarity=0.431 Sum_probs=55.8
Q ss_pred CChhhhhHHHHHHHHHhhCC---CCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 10 PSRIELSPEIINCVELTINP---PEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 10 ~s~~~~~Rl~kE~~~l~~~~---~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
|+. +.+||++|++++..++ ..||.+...+ +|+++..+.|.||++||||||+|.+.|+||++
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn-~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~ 64 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVN-ENLKEIKGHIAGPEDTPYEGGVFELDIKIPEN 64 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEcc-CChhhceeEecCCCCCCCCCceEEEEEecCCC
Confidence 455 8999999999999887 6899999986 69999999999999999999999999999975
No 15
>KOG0428|consensus
Probab=99.56 E-value=5.1e-15 Score=96.82 Aligned_cols=59 Identities=31% Similarity=0.586 Sum_probs=54.4
Q ss_pred hhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 12 RIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 12 ~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
..+.+||+||.++|+ +|...+.+.|. ++||++|+++|.||.+|-|+||+|+.+|.||.+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPad 68 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPAD 68 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeEecCCC
Confidence 478999999999998 78888888885 789999999999999999999999999999975
No 16
>KOG0427|consensus
Probab=99.55 E-value=1.1e-14 Score=87.59 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=57.0
Q ss_pred CCChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 9 GPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 9 ~~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
.++..+.+||+||+.+|+.+||+|+.... .+||..|.+.+.|.++|.|+|.+|.+.++||+.
T Consensus 11 ~ls~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~ 72 (161)
T KOG0427|consen 11 ALSKIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEH 72 (161)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCC
Confidence 45568999999999999999999999995 369999999999999999999999999999974
No 17
>KOG0423|consensus
Probab=99.38 E-value=2.8e-13 Score=84.91 Aligned_cols=66 Identities=27% Similarity=0.328 Sum_probs=58.3
Q ss_pred ccCCCCChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy10014 5 KFYTGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILL 71 (72)
Q Consensus 5 ~~~~~~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~ 71 (72)
.++.......++.+.+|+++|..+||.||.|.+ +++|+...++.|-||.+|||++|.|+.++.+..
T Consensus 2 ~snenlpp~vik~~~kEl~~l~~~PPdGIKV~~-NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~k 67 (223)
T KOG0423|consen 2 ASNENLPPNVIKQLAKELKSLDESPPDGIKVVV-NEEDFTDIQADIEGPVGTPYANGLFRMKLALSK 67 (223)
T ss_pred CcccCCChHHHHHHHHHHHhcccCCCCceEEec-ChHHhHHHHhhccCCCCCccccceeeehhhhcC
Confidence 445556667889999999999999999999998 678999999999999999999999999886643
No 18
>KOG0422|consensus
Probab=99.25 E-value=8.1e-12 Score=75.77 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=52.5
Q ss_pred hhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 13 IELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
.+.+||.||+.+|++++...+.-...++.|+..|++.|. |++.||..|.|+++|+||.+
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~e 60 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVE 60 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCC
Confidence 478999999999999988777766667789999999998 89999999999999999964
No 19
>KOG0416|consensus
Probab=99.09 E-value=4.1e-10 Score=70.37 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 13 IELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
...+|+..++..|..+ +..|...+ +++.+++|.+.||.+|||+||+|++++++|+.
T Consensus 3 ~~~rRid~Dv~KL~~s---~yeV~~in-d~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~ 58 (189)
T KOG0416|consen 3 SGKRRIDTDVMKLLMS---DYEVTIIN-DGMQEFYVKFHGPKDSPYEGGVWKVRVELPDN 58 (189)
T ss_pred CcccchhhHHHHHHhc---CCeEEEec-CcccEEEEEeeCCCCCcccCceEEEEEECCCC
Confidence 3568899999998754 35666654 57999999999999999999999999999974
No 20
>KOG0895|consensus
Probab=98.88 E-value=6.5e-09 Score=78.34 Aligned_cols=69 Identities=28% Similarity=0.272 Sum_probs=63.3
Q ss_pred cccccCCCCChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy10014 2 KRIKFYTGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILL 71 (72)
Q Consensus 2 ~~~~~~~~~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~ 71 (72)
++.++..+.+....+|+++|++.+.++.++|+.+.+ ++..+....+.|.||.+|||++|+|.|.|.||.
T Consensus 271 ~k~~~~k~hs~~~skrv~ke~~llskdlpEgifvrp-~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~ 339 (1101)
T KOG0895|consen 271 KKGKSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRP-DEGRMDLIKALIIGPDGTPYADGLFLFDIQFPD 339 (1101)
T ss_pred ccCCCCCccchhhHHHHHHHhhhhcccCCCCccccc-cccccceeeeEEecCCCCCCcCCceeeEeecCC
Confidence 456777778889999999999999999999999998 567899999999999999999999999999996
No 21
>KOG0420|consensus
Probab=98.65 E-value=8.5e-08 Score=60.10 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=44.7
Q ss_pred ChhhhhHHHHHHHHHhhCCCCCEEEeecC-CCCcc--eEEEEEECCCCCCCCCcEEEEEEEecC
Q psy10014 11 SRIELSPEIINCVELTINPPEGIIAGPVN-EENFF--EWEALITGPEGTCFEGGVFPAKDKILL 71 (72)
Q Consensus 11 s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~-~~nl~--~w~~~i~GP~~tpy~gg~f~~~i~fp~ 71 (72)
++.+..||++++-+++. +++++...++ .+++. +++++|. |+++.|+||.|+|.+.+|+
T Consensus 26 ~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~ 86 (184)
T KOG0420|consen 26 VSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPN 86 (184)
T ss_pred ccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCC
Confidence 35678888888888754 6677654332 33444 5999999 9999999999999999986
No 22
>KOG0429|consensus
Probab=98.45 E-value=8.1e-07 Score=57.80 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 17 PEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 17 Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
-|..|+..+.+.+.+||.|.|+ -.|-+.|.++|.+ -.+.|.||+|+|+|.+|++
T Consensus 23 ~llAEf~lV~~ekL~gIyviPS-yan~l~WFGViFv-r~GiyaggVFRFtIliPdn 76 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPS-YANKLLWFGVIFV-RKGIYAGGVFRFTILIPDN 76 (258)
T ss_pred HHHHHHHHHHhccCCceEEccc-ccccceEEEEEEE-ecccccCceEEEEEEcCcc
Confidence 4667777778899999999995 5688999999996 5669999999999999874
No 23
>KOG0896|consensus
Probab=98.05 E-value=8.3e-06 Score=49.38 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHhhCC-CCCEEEeecCCCC--cceEEEEEECCCCCCCCCcEEEEEEEec
Q psy10014 15 LSPEIINCVELTINP-PEGIIAGPVNEEN--FFEWEALITGPEGTCFEGGVFPAKDKIL 70 (72)
Q Consensus 15 ~~Rl~kE~~~l~~~~-~~~i~~~~~~~~n--l~~w~~~i~GP~~tpy~gg~f~~~i~fp 70 (72)
.-||.+|+..=++.- +..++....|++| +..|..+|.||..|+||+.+|.++|...
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cg 65 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECG 65 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecC
Confidence 345777766655433 3335555555555 7799999999999999999999999875
No 24
>KOG0895|consensus
Probab=98.02 E-value=3.6e-06 Score=64.03 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 14 ELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 14 ~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
-++..+.|+..|..+.+.||.|.. .++.+.-..+.|.||.+|||++|.|.|.+.||.+
T Consensus 852 ~~~~~~~~~~~~~~~~~~~~~vr~-~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~ 909 (1101)
T KOG0895|consen 852 WAKKVQTEWKILPLSLPSGIFVRA-YEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQD 909 (1101)
T ss_pred HHHHHHHHHHhhhccCCCceEEEe-chHHHHHHHHHhhCCCCCccccceEEEEeecCCC
Confidence 345566677777788899999997 5667777899999999999999999999999974
No 25
>smart00340 HALZ homeobox associated leucin zipper.
Probab=73.01 E-value=3.6 Score=20.32 Aligned_cols=15 Identities=20% Similarity=-0.093 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHhhC
Q psy10014 14 ELSPEIINCVELTIN 28 (72)
Q Consensus 14 ~~~Rl~kE~~~l~~~ 28 (72)
-.+||++|+++|...
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 468999999999753
No 26
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=58.96 E-value=22 Score=21.73 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=20.6
Q ss_pred CCcceEEEEEECCCCCCCC-CcEEEEEEEe
Q psy10014 41 ENFFEWEALITGPEGTCFE-GGVFPAKDKI 69 (72)
Q Consensus 41 ~nl~~w~~~i~GP~~tpy~-gg~f~~~i~f 69 (72)
.|-..|.|++.|+++|+.. .-+|-+.+-|
T Consensus 45 Gd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 45 GDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred CCCcceEEEEECCCCcceeccccchheeeH
Confidence 4667799999999998864 4555544443
No 27
>PF11619 P53_C: Transcription factor P53 - C terminal domain; InterPro: IPR024631 The p53 tumour suppressor [, , , , ] is a protein found in increased amounts in a wide variety of transformed cells. It is also detectable in many proliferating non-transformed cells, but it is undetectable or present at low levels in resting cells. It is frequently mutated or inactivated in many types of cancer. p53 seems to act as a tumour suppressor in some, but probably not all, tumour types. p53 has been implicated in cell cycle regulation, particularly in the monitoring of genomic DNA integrity prior to replication; for this reason it has been dubbed `guardian of the genome'. p53 is a sequence-specific DNA-binding protein and transcription factor. The structure of p53 comprises 4 domains: an N-terminal transactivation domain; a central DNA-binding domain; an oligomerisation domain; and a C-terminal, basic, regulatory domain [, ]. The structure of the oligomerisation domain consists of a dimer of dimers, each dimer consisting of 2 anti-parallel alpha-helices and an anti-parallel beta-sheet. The sheets lie on opposite sides of the tetramer and the helices form an unusual 4-helix bundle [, ]. While the majority of p53 mutations found in human cancers are located in the DNA-binding domain, some are also found in the oligomerisation domain. This entry represents the C-terminal domain of Drosophila transcription factor p53. While the rest of the protein is quite conserved between the different transcription factors such as p53 and p73, the C-terminal domain is highly divergent. The Drosophila p53 structure is characterised by an additional N-terminal beta-strand and a C-terminal helix [].; PDB: 2RP4_B.
Probab=55.89 E-value=27 Score=18.84 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=16.1
Q ss_pred CcceEEEEEECCCCCCCCCcEEEEEEEecC
Q psy10014 42 NFFEWEALITGPEGTCFEGGVFPAKDKILL 71 (72)
Q Consensus 42 nl~~w~~~i~GP~~tpy~gg~f~~~i~fp~ 71 (72)
.-.+|+|.-. .+|-|++.|++|.
T Consensus 3 ~~~dW~Vsrt-------~dGdYrL~itcp~ 25 (71)
T PF11619_consen 3 SAADWEVSRT-------LDGDYRLVITCPK 25 (71)
T ss_dssp TT-S-EEEEE-------TTTCEEEEEEESS
T ss_pred ccccceeeec-------cCCceEEEEecCc
Confidence 4567988776 2477999999985
No 28
>KOG3357|consensus
Probab=51.70 E-value=6.1 Score=24.25 Aligned_cols=51 Identities=20% Similarity=0.106 Sum_probs=28.1
Q ss_pred ccCCCCChhhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcE
Q psy10014 5 KFYTGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGV 62 (72)
Q Consensus 5 ~~~~~~s~~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~ 62 (72)
+..++-...-.+||+.|++.|...- .. +.++=..|.-.=..+++|-|-|-.
T Consensus 19 kagprd~~~wvqrlkeey~sli~yv----qn---nk~~d~dwfrlesn~egtrwfgkc 69 (167)
T KOG3357|consen 19 KAGPRDGDLWVQRLKEEYQSLIAYV----QN---NKSNDNDWFRLESNKEGTRWFGKC 69 (167)
T ss_pred cCCCccchHHHHHHHHHHHHHHHHH----Hh---CcccCCcceEeccCccccceehhh
Confidence 4444545567899999999985411 00 112223344333456667666543
No 29
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=47.32 E-value=15 Score=19.39 Aligned_cols=13 Identities=0% Similarity=-0.107 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHhh
Q psy10014 15 LSPEIINCVELTI 27 (72)
Q Consensus 15 ~~Rl~kE~~~l~~ 27 (72)
.+||.+|++++.-
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4589999999853
No 30
>PHA02102 hypothetical protein
Probab=47.06 E-value=16 Score=19.60 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHhhCCCCCEEEeecCCCCcceE
Q psy10014 14 ELSPEIINCVELTINPPEGIIAGPVNEENFFEW 46 (72)
Q Consensus 14 ~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w 46 (72)
.+..|.+|.++|.....-|+.+.-.++-++..|
T Consensus 13 eLqkLl~eV~dlAse~~yGvein~~nev~f~DW 45 (72)
T PHA02102 13 ELQKLLKEVKDLASEQDYGVEINDDNEVRFEDW 45 (72)
T ss_pred HHHHHHHHHHHHhhhhccceeeCCCCcEeHHHh
Confidence 456778888888888787887765333345556
No 31
>PF01107 MP: Viral movement protein (MP); InterPro: IPR001022 The movement protein of tobamoviruses is necessary for the initial cell-to-cell movement during the early stages of a viral infection. This movement is active, and involves the interaction of the movement protein with the plasmodesmata. The movement protein possesses the ability to bind to RNA to achieve its role []. The N terminus contains two particularly well-conserved regions, substitutions in one of these results in temperature-sensitive cell-to-cell movement. The C terminus contains three sub-regions characterised by the distributions of charged amino acid residues [].; GO: 0003676 nucleic acid binding, 0006810 transport
Probab=45.84 E-value=74 Score=19.92 Aligned_cols=38 Identities=13% Similarity=0.019 Sum_probs=26.1
Q ss_pred CCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEe
Q psy10014 31 EGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKI 69 (72)
Q Consensus 31 ~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~f 69 (72)
|++.+...|.+.-..|++.+. -.+..++.|..-+.|++
T Consensus 130 Pn~~vsl~D~~~~~~l~l~~~-~~g~~~~~G~~p~SI~~ 167 (189)
T PF01107_consen 130 PNYSVSLDDPNLNDSLQLSVK-FEGVDMEDGSHPFSIEY 167 (189)
T ss_pred CCcEEEecchhcCCcEEEEEE-ccccccCCCcEeEEEEE
Confidence 344444433234567888877 67777999999998876
No 32
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=41.08 E-value=45 Score=19.04 Aligned_cols=27 Identities=11% Similarity=0.130 Sum_probs=21.8
Q ss_pred eEEEEEECCCCCCCCCcEEEEEEEecC
Q psy10014 45 EWEALITGPEGTCFEGGVFPAKDKILL 71 (72)
Q Consensus 45 ~w~~~i~GP~~tpy~gg~f~~~i~fp~ 71 (72)
-.++.+.|+...+=.|..+.+.+.|-+
T Consensus 77 g~HlmL~g~~~~l~~G~~v~ltL~f~~ 103 (110)
T PF04314_consen 77 GYHLMLMGLKRPLKPGDTVPLTLTFED 103 (110)
T ss_dssp CCEEEEECESS-B-TTEEEEEEEEETT
T ss_pred CEEEEEeCCcccCCCCCEEEEEEEECC
Confidence 368889999999999999999999864
No 33
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=40.67 E-value=46 Score=19.88 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=19.1
Q ss_pred CCCChhhhhHHHHHHHHHhhCCCCC
Q psy10014 8 TGPSRIELSPEIINCVELTINPPEG 32 (72)
Q Consensus 8 ~~~s~~~~~Rl~kE~~~l~~~~~~~ 32 (72)
++.+.....||.+|++....+|..|
T Consensus 22 pRk~~krr~rLl~Ef~rR~GDpn~G 46 (118)
T PF09929_consen 22 PRKNKKRRSRLLREFQRRSGDPNVG 46 (118)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 4456677889999999998877543
No 34
>COG2847 Copper(I)-binding protein [Inorganic ion transport and metabolism]
Probab=39.12 E-value=84 Score=19.53 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.8
Q ss_pred eEEEEEECCCCCCCCCcEEEEEEEecC
Q psy10014 45 EWEALITGPEGTCFEGGVFPAKDKILL 71 (72)
Q Consensus 45 ~w~~~i~GP~~tpy~gg~f~~~i~fp~ 71 (72)
-.|+.|.|++...=+|-.|.++++|-+
T Consensus 104 gyHvMlm~lK~pl~eGd~v~vtL~f~~ 130 (151)
T COG2847 104 GYHVMLMGLKKPLKEGDKVPVTLKFEK 130 (151)
T ss_pred CEEEEEeccCCCccCCCEEEEEEEEec
Confidence 478899999999999999999999854
No 35
>PF15586 Imm47: Immunity protein 47
Probab=34.67 E-value=99 Score=18.16 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=21.5
Q ss_pred ecCCCCcceEEEEEECCCCCCCCCcEEEEEEE
Q psy10014 37 PVNEENFFEWEALITGPEGTCFEGGVFPAKDK 68 (72)
Q Consensus 37 ~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~ 68 (72)
|.+.+|..-|.-...||++.+ .+-.|.+.+-
T Consensus 20 Ped~~~F~~~l~l~IG~~~~~-G~d~F~v~Vc 50 (116)
T PF15586_consen 20 PEDPDNFCFWLELDIGPEGED-GSDYFQVFVC 50 (116)
T ss_pred CCCCcceEEEEEEEECCCCCC-ccceEEEEEE
Confidence 445567778877888998876 3455666654
No 36
>PLN03005 beta-fructofuranosidase
Probab=34.32 E-value=1.2e+02 Score=22.83 Aligned_cols=37 Identities=41% Similarity=0.727 Sum_probs=22.9
Q ss_pred HHhhCCCCCEEEeecCCCCcceEEEEEEC--CCCCCCC---CcEEE
Q psy10014 24 ELTINPPEGIIAGPVNEENFFEWEALITG--PEGTCFE---GGVFP 64 (72)
Q Consensus 24 ~l~~~~~~~i~~~~~~~~nl~~w~~~i~G--P~~tpy~---gg~f~ 64 (72)
+|..+-|-.| +.|.-+.+ +|+. ++| |+++||+ ||.|-
T Consensus 411 ~Lv~~MPlkI-cyPa~e~~--eWri-~tG~dpKN~PWSYHNGGsWP 452 (550)
T PLN03005 411 ELVGEMPLKI-CYPCLEGH--EWRI-VTGCDPKNTRWSYHNGGSWP 452 (550)
T ss_pred HHhccCCcce-eecccCCc--ccee-cccCCCCCCCccccCCCcch
Confidence 5555444444 44654444 8988 344 8999974 77764
No 37
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=33.23 E-value=11 Score=23.39 Aligned_cols=22 Identities=9% Similarity=-0.153 Sum_probs=14.8
Q ss_pred ccCCCCChhhhhHHHHHHHHHh
Q psy10014 5 KFYTGPSRIELSPEIINCVELT 26 (72)
Q Consensus 5 ~~~~~~s~~~~~Rl~kE~~~l~ 26 (72)
+..++-...-..||+.|++.|.
T Consensus 16 ~AGPrd~~~W~~RLKEEy~aLI 37 (161)
T PF08694_consen 16 KAGPRDGDLWVQRLKEEYQALI 37 (161)
T ss_dssp ---TTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHH
Confidence 3444444567899999999975
No 38
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=32.64 E-value=45 Score=21.84 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=15.4
Q ss_pred ceEEEEEECCCCCCCCC
Q psy10014 44 FEWEALITGPEGTCFEG 60 (72)
Q Consensus 44 ~~w~~~i~GP~~tpy~g 60 (72)
+.|.+.+.|..+|+||+
T Consensus 204 y~FDI~Lqg~~etvf~~ 220 (220)
T TIGR02422 204 YRFDIVLRGRRATPFEN 220 (220)
T ss_pred EEEEEEEcCCCcCcCCC
Confidence 78999999999999984
No 39
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.61 E-value=95 Score=17.02 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=14.7
Q ss_pred ceEEEEEECCCCCCCCCcEEEEEEEe
Q psy10014 44 FEWEALITGPEGTCFEGGVFPAKDKI 69 (72)
Q Consensus 44 ~~w~~~i~GP~~tpy~gg~f~~~i~f 69 (72)
--|++.|.|. ++|..|.+.+.-
T Consensus 47 gvw~~~v~~~----~~g~~Y~y~i~~ 68 (100)
T cd02860 47 GVWSVTLDGD----LEGYYYLYEVKV 68 (100)
T ss_pred CEEEEEeCCc----cCCcEEEEEEEE
Confidence 4688888653 556677777754
No 40
>KOG1932|consensus
Probab=30.39 E-value=1.5e+02 Score=24.33 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=15.8
Q ss_pred CCCCCCcEEEEEEEecCC
Q psy10014 55 GTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 55 ~tpy~gg~f~~~i~fp~~ 72 (72)
|++|+-++|.|++++|.+
T Consensus 193 D~~~e~~tWeLeftvp~~ 210 (1180)
T KOG1932|consen 193 DSSYERCTWELEFTVPKN 210 (1180)
T ss_pred CCccccceEEEEEEeccc
Confidence 578999999999999964
No 41
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=29.81 E-value=65 Score=14.57 Aligned_cols=17 Identities=18% Similarity=-0.125 Sum_probs=11.9
Q ss_pred CCChhhhhHHHHHHHHH
Q psy10014 9 GPSRIELSPEIINCVEL 25 (72)
Q Consensus 9 ~~s~~~~~Rl~kE~~~l 25 (72)
+.|+.-+++|.+|++..
T Consensus 13 G~sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 13 GKSPRLARLIRKEIERL 29 (30)
T ss_dssp SS-HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHh
Confidence 45667788888888764
No 42
>COG5453 Uncharacterized conserved protein [Function unknown]
Probab=29.63 E-value=52 Score=18.85 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=9.5
Q ss_pred CCC-CCcEEEEEEEe
Q psy10014 56 TCF-EGGVFPAKDKI 69 (72)
Q Consensus 56 tpy-~gg~f~~~i~f 69 (72)
||| +||.|++-=.+
T Consensus 36 tP~~eggQyr~aG~I 50 (96)
T COG5453 36 TPISEGGQYRLAGRI 50 (96)
T ss_pred eecccCCeEEEeeEe
Confidence 565 68888875444
No 43
>PF14501 HATPase_c_5: GHKL domain
Probab=29.35 E-value=47 Score=18.18 Aligned_cols=12 Identities=42% Similarity=0.556 Sum_probs=7.3
Q ss_pred CCcEEEEEEEec
Q psy10014 59 EGGVFPAKDKIL 70 (72)
Q Consensus 59 ~gg~f~~~i~fp 70 (72)
+++.|.++|.||
T Consensus 89 ~~~~f~~~i~ip 100 (100)
T PF14501_consen 89 EDGIFTVKIVIP 100 (100)
T ss_pred ECCEEEEEEEEC
Confidence 345666666665
No 44
>PF12075 KN_motif: KN motif; InterPro: IPR021939 This small motif is found at the N terminus of Kank proteins and has been called the KN (for Kank N-terminal) motif. This protein is found in eukaryotes. Proteins in this family are typically between 413 to 1202 amino acids in length. This protein is found associated with PF00023 from PFAM. This protein has two conserved sequence motifs: TPYG and LDLDF. Kank1 was obtained by positional cloning of a tumor suppressor gene in renal cell carcinoma, while the other members were found by homology search. The family is involved in the regulation of actin polymerisation and cell motility through signaling pathways containing PI3K/Akt and/or unidentified modulators/effectors [].
Probab=28.66 E-value=25 Score=16.95 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=6.4
Q ss_pred CCCCCCcEEEEEEEe
Q psy10014 55 GTCFEGGVFPAKDKI 69 (72)
Q Consensus 55 ~tpy~gg~f~~~i~f 69 (72)
.||| | |++.+.|
T Consensus 5 ~tPY--G-yhiDLDF 16 (39)
T PF12075_consen 5 ETPY--G-YHIDLDF 16 (39)
T ss_pred cCCc--c-eeecchH
Confidence 3566 3 5555544
No 45
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=28.21 E-value=43 Score=18.46 Aligned_cols=12 Identities=17% Similarity=-0.003 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHH
Q psy10014 14 ELSPEIINCVEL 25 (72)
Q Consensus 14 ~~~Rl~kE~~~l 25 (72)
-++||+++++-|
T Consensus 60 QLKRiQRdlrGL 71 (76)
T PF08203_consen 60 QLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHhhCCC
Confidence 478999998876
No 46
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=26.48 E-value=54 Score=23.03 Aligned_cols=55 Identities=7% Similarity=-0.038 Sum_probs=30.7
Q ss_pred hhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCCCcEEEEEEEec
Q psy10014 13 IELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAKDKIL 70 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~gg~f~~~i~fp 70 (72)
...++|..|+..+....+.+..+-+ +..+++...-++. -...+.+....|.|++|
T Consensus 32 lsP~~L~~em~~V~~~L~~~~~lp~-~~~~m~~ly~l~~--v~~~~~~~~liF~i~VP 86 (361)
T PF12259_consen 32 LSPKQLLDEMKNVSSHLPRDWSLPL-EKSNMHDLYRLIK--VHFITPDNKLIFVIEVP 86 (361)
T ss_pred CCHHHHHHHHHHHHhcCCcccccCc-cccHHHHHhhhEE--EEEEeeCCEEEEEEEec
Confidence 5688999999999776666655433 3333333322221 11223355666666665
No 47
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=25.38 E-value=1.1e+02 Score=15.88 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=15.8
Q ss_pred cceEEEEEECCCCCCCCCc-EEEEEEEecC
Q psy10014 43 FFEWEALITGPEGTCFEGG-VFPAKDKILL 71 (72)
Q Consensus 43 l~~w~~~i~GP~~tpy~gg-~f~~~i~fp~ 71 (72)
--.|+++|.+ ..-+|+ .|.+.|..+.
T Consensus 48 ~G~w~~~~~~---~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 48 DGVWEVTVPG---DLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TTEEEEEEEG---CGTTTT-EEEEEEEETT
T ss_pred CCEEEEEEcC---CcCCCCEEEEEEEEeCC
Confidence 3468888875 112234 7888877653
No 48
>PF06675 DUF1177: Protein of unknown function (DUF1177); InterPro: IPR009561 This family consists of several hypothetical archaeal and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=25.32 E-value=42 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=12.2
Q ss_pred CCCCCCCcEEEEEEE
Q psy10014 54 EGTCFEGGVFPAKDK 68 (72)
Q Consensus 54 ~~tpy~gg~f~~~i~ 68 (72)
+=|||.+|+|++.--
T Consensus 181 DITPygNgvyHiNSI 195 (276)
T PF06675_consen 181 DITPYGNGVYHINSI 195 (276)
T ss_pred ccccCCCCceeeecc
Confidence 448999999998744
No 49
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=24.23 E-value=22 Score=19.72 Aligned_cols=12 Identities=17% Similarity=0.711 Sum_probs=7.4
Q ss_pred ceEEEEEECCCC
Q psy10014 44 FEWEALITGPEG 55 (72)
Q Consensus 44 ~~w~~~i~GP~~ 55 (72)
++|.+.|.|+.+
T Consensus 2 h~W~v~Vr~~~~ 13 (84)
T PF03366_consen 2 HKWTVYVRGLDN 13 (84)
T ss_dssp EEEEEEEEECCC
T ss_pred cEEEEEEEeCCC
Confidence 456666666555
No 50
>PF10069 DICT: Sensory domain found in DIguanylate Cyclases & Two-component systems; InterPro: IPR019278 This entry, found in various cyanobacterial sensor proteins that catalyse the reaction [ATP + protein L-histidine = ADP + protein N- phospho-L-histidine], has no known function.
Probab=24.17 E-value=1.6e+02 Score=17.27 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.0
Q ss_pred cceEEEEEECCC
Q psy10014 43 FFEWEALITGPE 54 (72)
Q Consensus 43 l~~w~~~i~GP~ 54 (72)
-.+|++++.||.
T Consensus 108 ~~EWfvvv~~~~ 119 (129)
T PF10069_consen 108 RREWFVVVDGPH 119 (129)
T ss_pred eeEEEEEEECCC
Confidence 457888888776
No 51
>KOG0680|consensus
Probab=23.37 E-value=1.7e+02 Score=20.88 Aligned_cols=46 Identities=13% Similarity=-0.030 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCCCCC
Q psy10014 13 IELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFE 59 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~tpy~ 59 (72)
-...||.+|++.|.-.. -++.|.-+.+--.+-|++.-.-++.+-|+
T Consensus 332 gF~~RL~~Elr~l~P~d-~~v~V~~p~dp~~~~W~~g~~~~~~~~~~ 377 (400)
T KOG0680|consen 332 GFRQRLARELRSLLPAD-WEVSVSVPEDPITFAWEGGSEFAKTDSFE 377 (400)
T ss_pred chHHHHHHHHHhhCCcc-ceEEEecCCCcceeeehhccccccCcchh
Confidence 35789999999985321 12444332112366776644434444343
No 52
>PF13115 YtkA: YtkA-like
Probab=23.26 E-value=85 Score=16.58 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=10.6
Q ss_pred CCCcEEEEEEEecC
Q psy10014 58 FEGGVFPAKDKILL 71 (72)
Q Consensus 58 y~gg~f~~~i~fp~ 71 (72)
.+.|.|.+.+.|+.
T Consensus 64 ~~~G~Y~~~~~f~m 77 (86)
T PF13115_consen 64 TGPGVYEAEVTFSM 77 (86)
T ss_pred CCCCeEEEEeecCC
Confidence 46788888888864
No 53
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=23.06 E-value=2e+02 Score=17.92 Aligned_cols=56 Identities=9% Similarity=-0.055 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHhhCCCCCEEEeecCCCCcceEEEEEECCCCC--CCCCcEEEEEEEec
Q psy10014 13 IELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGT--CFEGGVFPAKDKIL 70 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~~~~~~i~~~~~~~~nl~~w~~~i~GP~~t--py~gg~f~~~i~fp 70 (72)
.....+.+++..+... .....+...+ +.-..|.+.+.+..+- -...+.|.+++.+|
T Consensus 52 ~~~~~~~~~l~~~l~~-~~~~~l~f~d-~p~~~y~~~~~~~~~~~~~~~~~~~ti~f~c~ 109 (249)
T PF05709_consen 52 EDFEQKRRELASWLNP-KEPVKLIFDD-DPDKYYYAKVSGSPDPDEGNNSGTFTITFTCP 109 (249)
T ss_dssp HHHHHHHHHHHHHH---SS-EEEEETT-STT-EEEEEEEEEEE--SSSSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCc-CCCEEEEEEC-CCCEEEEEEECCcccccccceeEEEEEEEEEC
Confidence 4455677788887643 3347787743 4457888888775321 13335666666653
No 54
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=22.82 E-value=1.6e+02 Score=16.99 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=19.1
Q ss_pred eEEEEEECCCCCCCCCcEEEEEEEecCC
Q psy10014 45 EWEALITGPEGTCFEGGVFPAKDKILLS 72 (72)
Q Consensus 45 ~w~~~i~GP~~tpy~gg~f~~~i~fp~~ 72 (72)
.....|.-|+ |+.|...+.|.|.++
T Consensus 73 ~~~~vV~vak---Yen~~~~ftitF~~e 97 (101)
T PF13026_consen 73 GYATVVQVAK---YENGKHQFTITFDNE 97 (101)
T ss_pred cceEEEEEec---ccCccEEEEEEeCcc
Confidence 5555565555 999999999999764
No 55
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=22.79 E-value=2.2e+02 Score=18.39 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHHhh---CCCCCEEEeecCCCCcceEEEEEECCCC-CCCCCcEEEEEEEecCC
Q psy10014 13 IELSPEIINCVELTI---NPPEGIIAGPVNEENFFEWEALITGPEG-TCFEGGVFPAKDKILLS 72 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~---~~~~~i~~~~~~~~nl~~w~~~i~GP~~-tpy~gg~f~~~i~fp~~ 72 (72)
.+..||...+++++. +.+. -|.+... |.. .-| || |.+-|.|.++
T Consensus 9 s~~eR~~e~~~~~k~~L~~a~~-------------GW~~~yy-p~~~~~~-GG-y~f~~kF~~~ 56 (235)
T PF14135_consen 9 SPAERINEALAEYKKILTSAPN-------------GWKLEYY-PKTDQSY-GG-YTFLMKFDDD 56 (235)
T ss_pred CHHHHHHHHHHHHHHHHhcCCC-------------ceEEEEE-CCCCccC-Cc-EEEEEEECCC
Confidence 356677776666654 2222 3666666 333 234 33 8888888653
No 56
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=22.15 E-value=1.6e+02 Score=16.73 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=13.2
Q ss_pred ceEEEEEECCCCCCCCCcEEEEEEE
Q psy10014 44 FEWEALITGPEGTCFEGGVFPAKDK 68 (72)
Q Consensus 44 ~~w~~~i~GP~~tpy~gg~f~~~i~ 68 (72)
..|...|.-|.+ |.|.|.+.
T Consensus 48 ~~~~G~~~~~~~-----G~y~f~~~ 67 (145)
T PF07691_consen 48 VRWTGYFKPPET-----GTYTFSLT 67 (145)
T ss_dssp EEEEEEEEESSS-----EEEEEEEE
T ss_pred EEEEEEEecccC-----ceEEEEEE
Confidence 367888873333 77887665
No 57
>PF05015 Plasmid_killer: Plasmid maintenance system killer protein; InterPro: IPR007711 Several plasmids with proteic killer gene systems have been reported. All of them encode a stable toxin and an unstable antidote. Upon loss of the plasmid, the less stable inhibitor is inactivated more rapidly than the toxin, allowing the toxin to be activated. The activation of those systems result in cell filamentation and cessation of viable cell production. It has been verified that both the stable killer and the unstable inhibitor of the systems are short polypeptides. This family corresponds to the toxin.
Probab=22.12 E-value=1.6e+02 Score=16.29 Aligned_cols=41 Identities=10% Similarity=-0.014 Sum_probs=22.0
Q ss_pred ChhhhhHHHHHHHHHhhC-------CCCCEEEeecCCCCcceEEEEEE
Q psy10014 11 SRIELSPEIINCVELTIN-------PPEGIIAGPVNEENFFEWEALIT 51 (72)
Q Consensus 11 s~~~~~Rl~kE~~~l~~~-------~~~~i~~~~~~~~nl~~w~~~i~ 51 (72)
++...+++.+=+..|... .+|+....+...+.--.|.+.|.
T Consensus 23 ~~~~~~~~~~~L~~L~aa~~~~dl~~~p~~r~h~L~G~~~g~~Si~i~ 70 (93)
T PF05015_consen 23 PADIAKKLRRRLDQLDAATSLEDLRSPPSNRLHKLKGDRKGQWSIRIN 70 (93)
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHhcCcCCCcccccCCCCCcEEEEeC
Confidence 345677777777777643 24455555433222335555554
No 58
>KOG0280|consensus
Probab=21.34 E-value=1.6e+02 Score=20.66 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=24.7
Q ss_pred CEEEeecCCCCcceEEEEEEC-C-CCCCCCCcEEEEE
Q psy10014 32 GIIAGPVNEENFFEWEALITG-P-EGTCFEGGVFPAK 66 (72)
Q Consensus 32 ~i~~~~~~~~nl~~w~~~i~G-P-~~tpy~gg~f~~~ 66 (72)
.|..+.. ++++..|.-.-.| | ..++-.||+|++.
T Consensus 225 ~I~TGsY-De~i~~~DtRnm~kPl~~~~v~GGVWRi~ 260 (339)
T KOG0280|consen 225 YIATGSY-DECIRVLDTRNMGKPLFKAKVGGGVWRIK 260 (339)
T ss_pred eEEEecc-ccceeeeehhcccCccccCccccceEEEE
Confidence 4555554 4689999988555 5 4578889999985
No 59
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=21.19 E-value=64 Score=19.57 Aligned_cols=10 Identities=60% Similarity=0.956 Sum_probs=6.6
Q ss_pred EEEEECCCCC
Q psy10014 47 EALITGPEGT 56 (72)
Q Consensus 47 ~~~i~GP~~t 56 (72)
...|.||+||
T Consensus 19 ~~~i~GpPGT 28 (236)
T PF13086_consen 19 ITLIQGPPGT 28 (236)
T ss_dssp -EEEE-STTS
T ss_pred CEEEECCCCC
Confidence 4678999987
No 60
>KOG3470|consensus
Probab=21.07 E-value=83 Score=18.48 Aligned_cols=20 Identities=5% Similarity=-0.340 Sum_probs=16.6
Q ss_pred CCCChhhhhHHHHHHHHHhh
Q psy10014 8 TGPSRIELSPEIINCVELTI 27 (72)
Q Consensus 8 ~~~s~~~~~Rl~kE~~~l~~ 27 (72)
.+|-+.+.+||++.+.+|+.
T Consensus 60 ~~mlPD~~~RL~~a~~DLe~ 79 (107)
T KOG3470|consen 60 RMMLPDSQRRLRKAYEDLES 79 (107)
T ss_pred HHHChHHHHHHHHHHHHHHH
Confidence 35667899999999999976
No 61
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.78 E-value=99 Score=15.65 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHHHhhC
Q psy10014 13 IELSPEIINCVELTIN 28 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~~ 28 (72)
...+|+++|+++++++
T Consensus 48 ~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777777777653
No 62
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=20.62 E-value=1.1e+02 Score=17.81 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=17.8
Q ss_pred ccCCCCCh-hhhhHHHHHHHHHhhCC
Q psy10014 5 KFYTGPSR-IELSPEIINCVELTINP 29 (72)
Q Consensus 5 ~~~~~~s~-~~~~Rl~kE~~~l~~~~ 29 (72)
.|.+.... -.+++|.||+.++..+|
T Consensus 13 TFGp~~~p~g~lkHl~kE~~E~~~~p 38 (100)
T PF04447_consen 13 TFGPGVGPVGPLKHLSKEALEAEAAP 38 (100)
T ss_pred hcCCCCCcchHHHHHHHHHHHHHhCC
Confidence 35544333 46889999999998865
No 63
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=20.32 E-value=1.2e+02 Score=16.92 Aligned_cols=15 Identities=0% Similarity=-0.252 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHhh
Q psy10014 13 IELSPEIINCVELTI 27 (72)
Q Consensus 13 ~~~~Rl~kE~~~l~~ 27 (72)
.+++||.||.....+
T Consensus 7 ~~vkRL~KE~~~Y~k 21 (90)
T PF02970_consen 7 GVVKRLLKEEASYEK 21 (90)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999877653
No 64
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=20.04 E-value=1.3e+02 Score=17.52 Aligned_cols=20 Identities=30% Similarity=0.768 Sum_probs=15.2
Q ss_pred eEEEEEECCCCCCCCCcEEEEE
Q psy10014 45 EWEALITGPEGTCFEGGVFPAK 66 (72)
Q Consensus 45 ~w~~~i~GP~~tpy~gg~f~~~ 66 (72)
+|.+.|=| +..|+|..|.|.
T Consensus 2 kWkC~iCg--~~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICG--KPIYEGQLFTFT 21 (101)
T ss_pred ceEEEecC--CeeeecceEEEe
Confidence 68888863 567888888774
Done!