RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10014
(72 letters)
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha,
ligase, UBL conjugation pathway, endo reticulum,
membrane, metal-binding; 1.80A {Homo sapiens} PDB:
3fsh_A 2cyx_A 2kly_A
Length = 164
Score = 69.7 bits (171), Expect = 3e-17
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+LT+NPPEGI+AGP+NEENFFEWEALI GPE TCFE GVFPA
Sbjct: 14 QLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAI 56
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP:
d.20.1.1
Length = 165
Score = 69.3 bits (170), Expect = 4e-17
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L + P GI+AGP +E N F W+ LI GP T + GVF AK
Sbjct: 15 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAK 57
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1
PDB: 1pzv_A
Length = 172
Score = 69.4 bits (170), Expect = 5e-17
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL NP EG AG +++ + + WE LI GP T +EGGVF A
Sbjct: 28 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAH 70
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 67.8 bits (166), Expect = 2e-16
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L P EG V+E + + WE I GP T +EGG F A+
Sbjct: 18 GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKAR 60
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 66.5 bits (163), Expect = 4e-16
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+ +P I V+E + + GP GT +EGG F
Sbjct: 12 AVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKF 51
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 66.0 bits (161), Expect = 2e-15
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+ +P I V+E + + GP GT +EGG F
Sbjct: 13 AVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKF 52
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 63.9 bits (156), Expect = 7e-15
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L N +GI A PV E+ EWE I G + + ++G VF
Sbjct: 34 DLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLT 75
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 62.7 bits (153), Expect = 1e-14
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L +PP GI P + N W A+I GP+ T ++GG F
Sbjct: 15 RLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLS 56
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome
pathway, structural genomics, protein structure
initiative; 1.10A {Caenorhabditis elegans} SCOP:
d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B*
4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A
3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A
...
Length = 150
Score = 62.6 bits (153), Expect = 1e-14
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 15 DLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLT 56
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 62.7 bits (153), Expect = 1e-14
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
LT +PP+GI P NEE+ + + I GPEGT + GG+F K
Sbjct: 24 TLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMK 65
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase,
UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 62.7 bits (153), Expect = 1e-14
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 30 DLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVF 68
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 62.7 bits (153), Expect = 2e-14
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L+ +PP AGPV ++ F W+A I GPE + + GGVF
Sbjct: 32 DLSKDPPTNCSAGPV-GDDMFHWQATIMGPEDSPYSGGVF 70
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum,
ligase, UBL conjugation pathway, structural genomics
consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 63.3 bits (154), Expect = 2e-14
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+ +P I A P+ N EW ++ GPE T +EGG + K
Sbjct: 25 RIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGK 66
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 62.7 bits (153), Expect = 2e-14
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+ + P G+ A P+ +N W A+I GP T +E G F
Sbjct: 15 RMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLL 56
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 62.3 bits (152), Expect = 2e-14
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L ++ GI A P +N F+W A + GP+ T +E +
Sbjct: 20 TLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLT 61
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo
sapiens} SCOP: d.20.1.1
Length = 136
Score = 61.6 bits (150), Expect = 3e-14
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 24 ELTINPPEGIIAGPVN-EENFFEWEALITGPEGTCFEGGVFPAK 66
L +PP G+ + + + +W + G GT +EG F
Sbjct: 33 ALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLL 76
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 63.8 bits (155), Expect = 4e-14
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 14 DLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVF 52
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 61.1 bits (149), Expect = 5e-14
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
E+ + V+E N W+ LI P+ ++ G F +
Sbjct: 13 EIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIE 54
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics
consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL
conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 62.1 bits (151), Expect = 5e-14
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
++T++PP AGP +N +EW + I GP G+ +EGGVF
Sbjct: 59 DITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVF 97
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 61.1 bits (149), Expect = 5e-14
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 24 ELTINPPEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVFPAK 66
+ + P G A PV + + +WEA I G EGT + GGV+P
Sbjct: 15 KWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPIT 61
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 61.1 bits (149), Expect = 5e-14
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L PP GI+A PV EN+ + LI GP+GT +EGG +
Sbjct: 12 NLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTY 50
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 61.6 bits (150), Expect = 6e-14
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L ++ +GI A P +N F+W I G GT +E +
Sbjct: 41 TLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRY 79
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 61.1 bits (149), Expect = 6e-14
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L P GI A P E N + +I GP+ + FEGG F
Sbjct: 16 RLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTF 54
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 60.3 bits (147), Expect = 7e-14
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
NPP N W G E T + V+ K
Sbjct: 17 NFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLK 58
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 60.8 bits (148), Expect = 8e-14
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 24 ELTINPPEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVFPAK 66
+ + P G A P + W+ I G T +EGG++
Sbjct: 21 QWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium,
SGC, ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 61.7 bits (150), Expect = 8e-14
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
++ + I A + NFFEW I GPEGT +EGG F
Sbjct: 34 DIENENVQEIDAHIK-DSNFFEWVGFIKGPEGTPYEGGHF 72
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex,
peroxisomal protein; 2.60A {Saccharomyces cerevisiae}
PDB: 2y9p_A 2y9o_A
Length = 172
Score = 60.9 bits (148), Expect = 9e-14
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 24 ELTINPPEGII--AGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+ NP GII P++E + +WEA+I+GP T +E F
Sbjct: 26 DPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRIL 70
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 60.0 bits (146), Expect = 1e-13
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
NPP N W G E T + V+ K
Sbjct: 31 NFLKNPPINCTIDVH-PSNIRIWIVQYVGLENTIYANEVYKIK 72
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 60.4 bits (147), Expect = 1e-13
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L +P GI A P ++N ++ I GPE + +E G+F
Sbjct: 16 KLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIF 54
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 59.6 bits (145), Expect = 2e-13
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L PP + ++ N W AL+ P+ + F +
Sbjct: 15 DLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLR 56
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A
3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 59.6 bits (145), Expect = 3e-13
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 24 ELTINPPEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVFPAK 66
+ P G +A P N WE I G +GT +EGG+F +
Sbjct: 18 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme;
structural genomics consortium, HSCP150, ligase, SGC;
2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 59.7 bits (145), Expect = 3e-13
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L PP GI ++ + A I G T +E GVF
Sbjct: 15 MLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVF 53
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating
tgtwinscan_2721, structural genomics, structural
genomics consortium, SGC; 2.11A {Toxoplasma gondii}
SCOP: d.20.1.1
Length = 193
Score = 58.3 bits (141), Expect = 1e-12
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
T + G+ A V + W I GP GT +EGG F
Sbjct: 56 AATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHF 94
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 55.7 bits (135), Expect = 7e-12
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+ T G + +++ + GP GT +EGG++
Sbjct: 10 DFTKLIMAGYDLELN-NGSTQDFDVMFHGPNGTAYEGGIW 48
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 55.4 bits (134), Expect = 9e-12
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 28 NPPEGIIAGPVNEE--NFFEWEALITGPEGTCFEGGVFPAK 66
N EG+ G + + W I G GT FE ++
Sbjct: 37 NVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLT 77
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 55.5 bits (134), Expect = 1e-11
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 24 ELTINPPEGIIAGPVNEE---NFFEWEALITGPEGTCFEGGVF 63
E +G ++ + ++ W +I GP T +E ++
Sbjct: 36 EGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 78
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 55.4 bits (134), Expect = 1e-11
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL N P + ++ + P+ ++GG F +
Sbjct: 25 ELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFE 66
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 55.4 bits (134), Expect = 1e-11
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 18 EIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E ++ I V +ENF E I GP T +EGG +
Sbjct: 16 EFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRY 60
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 55.5 bits (134), Expect = 2e-11
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 18 EIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E ++ I V +ENF E I GP T +EGG +
Sbjct: 13 EFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRY 57
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 53.5 bits (129), Expect = 4e-11
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 28 NPPEGIIAGPVNEE--NFFEWEALITGPEGTCFEGGVFPAK 66
PE G + + +W I GP + E ++
Sbjct: 22 FGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 62
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 54.0 bits (130), Expect = 5e-11
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 24 ELTINPPEGIIAGPV---NEENFFEWEALITGPEGTCFEGGVF 63
E +G ++ + + W +I GP T +E ++
Sbjct: 46 EGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 88
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 54.3 bits (130), Expect = 1e-10
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 24 ELTINPPEGIIAGP---VNEENFFEWEALITGPEGTCFEGGVFPAK 66
L+ + P + +EE + LITGP T + G F
Sbjct: 87 TLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFD 132
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 53.4 bits (128), Expect = 2e-10
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 18 EIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E ++ I V +ENF E I GP T +EGG +
Sbjct: 65 EFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRY 109
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 50.5 bits (121), Expect = 9e-10
Identities = 6/48 (12%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 21 NCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCF--EGGVFPAK 66
N + P V+ + + W + P + + G +
Sbjct: 27 NNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLS 74
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 48.9 bits (117), Expect = 3e-09
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L + E I G E+ GP+GT +EGGV+
Sbjct: 36 KLIESKHEVTILG-----GLNEFVVKFYGPQGTPYEGGVW 70
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 48.5 bits (116), Expect = 5e-09
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+ P + E+ GPEGT +E G +
Sbjct: 20 DYMRLCNSTRKVYP--SDTVAEFWVEFKGPEGTPYEDGTW 57
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 45.7 bits (109), Expect = 6e-08
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 27 INPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+N P+ + ++ ++ +I P+ ++ G F
Sbjct: 18 LNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKF 53
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 45.1 bits (107), Expect = 1e-07
Identities = 5/44 (11%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEA----LITGPEGTCFEGGVF 63
L + P + ++ ++ +I P+ + G
Sbjct: 40 SLDLPPTVTLNVITS-PDSADRSQSPKLEVIVRPDEGYYNYGSI 82
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 43.5 bits (103), Expect = 4e-07
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
EL + I + ++ ++ +I P+ ++ G F
Sbjct: 37 ELNLPKTCDI--SFSDPDDLLNFKLVI-CPDEGFYKSGKF 73
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A
{Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 37.2 bits (86), Expect = 9e-05
Identities = 5/42 (11%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 28 NPPEGIIAGPVNEENFFEWEALITG-PEGTCFEGGVFPAKDK 68
+ GI + + ++ ++W + + + K+K
Sbjct: 44 SYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK 85
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Length = 620
Score = 27.0 bits (59), Expect = 0.43
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 32 GIIAGPVNEENFFEWEALITGPEGTCF 58
G+IA + F W L T E T F
Sbjct: 14 GLIAVQTEQGVFVSWRFLGTDHETTAF 40
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM;
1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Length = 591
Score = 27.0 bits (59), Expect = 0.44
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 32 GIIAGPVNEENFFEWEALITGPEGTCF 58
G++A + F W L T F
Sbjct: 11 GLVAVKTDGGIFVSWRFLGTENASVLF 37
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 25.1 bits (55), Expect = 1.5
Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 10/47 (21%)
Query: 31 EGIIAGPVNEENFF----------EWEALITGPEGTCFEGGVFPAKD 67
G+ V +++ F + GP C E V
Sbjct: 7 LGLSKAYVGQKSSFTVDCSKAGNNMLLVGVHGPRTPCEEILVKHVGS 53
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Length = 96
Score = 23.6 bits (51), Expect = 5.8
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 10/47 (21%)
Query: 31 EGIIAGPVNEENFF----------EWEALITGPEGTCFEGGVFPAKD 67
G+ V ++N F + GP+ C E V +
Sbjct: 14 PGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGN 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.143 0.441
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,185,675
Number of extensions: 58826
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 54
Length of query: 72
Length of database: 6,701,793
Length adjustment: 42
Effective length of query: 30
Effective length of database: 5,529,111
Effective search space: 165873330
Effective search space used: 165873330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)