RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10014
(72 letters)
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 51.3 bits (122), Expect = 1e-10
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
+ +P I V+E + + GP GT +EGG F
Sbjct: 12 AVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVV 53
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 51.3 bits (122), Expect = 2e-10
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
++ P +G AG V++ + ++WE L+ GP T +EGG F A
Sbjct: 11 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAI 53
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 49.7 bits (118), Expect = 3e-10
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
EL NP EG AG +++ + + WE LI GP T +EGGVF A
Sbjct: 10 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAH 52
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 49.0 bits (116), Expect = 1e-09
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L ++ GI A P + +N F+W A + GP+ T +E +
Sbjct: 20 TLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKY 58
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 48.6 bits (115), Expect = 2e-09
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 24 ELTINPPEGIIAGPVNEE----NFFEWEALITGPEGTCFEGGVF 63
+ P G +A P N WE I G +GT +EGG+F
Sbjct: 13 AWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 56
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 47.0 bits (111), Expect = 5e-09
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+L N +GI A PV E+ EWE I G + + ++G VF
Sbjct: 15 DLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVF 53
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 46.7 bits (110), Expect = 7e-09
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E+ + V+E N W+ LI P+ ++ G F
Sbjct: 10 EIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAF 48
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 46.7 bits (110), Expect = 8e-09
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 25 LTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
T + G+ A V + W I GP GT +EGG F
Sbjct: 26 ATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHF 63
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 44.3 bits (104), Expect = 6e-08
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+ + P G+ A P+ +N W A+I GP T +E G F
Sbjct: 14 RMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLL 55
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 42.4 bits (99), Expect = 3e-07
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 8 TGPSRIELSPEIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
T PSR L + +L +PP G+ P E+N WEA+I GP+ T FE G F
Sbjct: 1 TTPSRRRLMRDF---KKLQEDPPAGVSGAP-TEDNILTWEAIIFGPQETPFEDGTFKLS 55
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 42.5 bits (99), Expect = 3e-07
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L + P GI+AGP +E N F W+ LI GP T + GVF AK
Sbjct: 14 QLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAK 56
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 41.6 bits (97), Expect = 4e-07
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
NPP + N W G E T + V+
Sbjct: 9 NFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKL 49
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 42.0 bits (98), Expect = 4e-07
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L PP + ++ N W AL+ P+ + F +
Sbjct: 11 DLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLR 52
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 41.6 bits (97), Expect = 4e-07
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 24 ELTINPPEGIIAGPVN-EENFFEWEALITGPEGTCFEGGVFPAK 66
L +PP G+ + + + +W + G GT +EG F
Sbjct: 14 ALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLL 57
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 41.7 bits (97), Expect = 5e-07
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
E+T++PP AGP +N +EW + I GP G+ +EGGVF
Sbjct: 13 EITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVFFLD 54
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 40.8 bits (95), Expect = 1e-06
Identities = 6/37 (16%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 27 INPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+N P+ + ++ ++ +I P+ ++ G F
Sbjct: 15 LNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKF 50
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 40.1 bits (93), Expect = 2e-06
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
L ++ +GI A P +N F+W I G GT +E +
Sbjct: 12 TLMMSGDKGISAFP-ESDNLFKWVGTIHGAAGTVYEDLRYKL 52
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 39.7 bits (92), Expect = 3e-06
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 23 VELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
V+L + E I E+ GP+GT +EGGV+ +
Sbjct: 13 VKLIESKHEVTI-----LGGLNEFVVKFYGPQGTPYEGGVWKVR 51
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 39.4 bits (91), Expect = 4e-06
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
L P GI A P +E N + +I GP+ + FEGG F
Sbjct: 13 RLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTF 51
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 39.5 bits (91), Expect = 4e-06
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L PP GI +++ + A I G T +E GVF +
Sbjct: 13 MLATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLE 54
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 37.5 bits (86), Expect = 2e-05
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L +PP AGPV ++ F W+A I GP + ++GGVF
Sbjct: 12 DLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLT 53
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 37.4 bits (86), Expect = 2e-05
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
+L +P GI A P +++N ++ I GPE + +E G+F +
Sbjct: 14 KLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELE 55
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 36.9 bits (85), Expect = 3e-05
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 28 NPPEGIIAGPVNEE--NFFEWEALITGPEGTCFEGGVFPAK 66
PE G + + +W I GP + E ++
Sbjct: 20 FGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLS 60
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 37.4 bits (86), Expect = 3e-05
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
+ +P I A P+ N EW ++ GPE T +EGG +
Sbjct: 12 RIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYY 50
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25
kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 35.6 bits (81), Expect = 1e-04
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 18 EIINCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVF 63
E ++ I V +ENF E I GP T +EGG +
Sbjct: 12 EFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRY 56
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 35.5 bits (81), Expect = 1e-04
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 24 ELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPA 65
LT +PP+GI P NEE+ + + I GPEGT + GG+F
Sbjct: 17 TLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRM 57
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 34.7 bits (79), Expect = 2e-04
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 40 EENFFEWEALITGPEGTCFEGGVF 63
+ E+ GPEGT +E G +
Sbjct: 22 SDTVAEFWVEFKGPEGTPYEDGTW 45
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 33.8 bits (77), Expect = 5e-04
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 24 ELTINPPEGIIAGPV---NEENFFEWEALITGPEGTCFEGGVFPAK 66
E +G ++ + + W +I GP T +E ++ K
Sbjct: 16 EGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 61
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 32.9 bits (74), Expect = 0.001
Identities = 5/42 (11%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 28 NPPEGIIAGPVNEENFFEWEALITG-PEGTCFEGGVFPAKDK 68
+ GI + + ++ ++W + + + K+K
Sbjct: 21 SYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK 62
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 29.2 bits (65), Expect = 0.022
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 38 VNEENFFEWEALITGPEGTCFEGGVFPAKDKILL 71
V + +TG + G + + L
Sbjct: 41 VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWL 74
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 24.3 bits (52), Expect = 1.2
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 20 INCVELTINPPEGIIAGPVNEENFFEWEALITGPEGTCFEGGVFPAK 66
L+ G + ++ + W+A + + G P+K
Sbjct: 18 FLSQALSFR--FGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSK 62
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 200
Score = 22.2 bits (46), Expect = 7.9
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 54 EGTCFEGGVFPAKDKIL 70
E TC EG +I+
Sbjct: 14 EATCEEGNPPEFVHEII 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.143 0.441
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 300,885
Number of extensions: 12159
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 32
Length of query: 72
Length of database: 2,407,596
Length adjustment: 40
Effective length of query: 32
Effective length of database: 1,858,396
Effective search space: 59468672
Effective search space used: 59468672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.4 bits)