Query psy10015
Match_columns 90
No_of_seqs 112 out of 1066
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 15:41:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 99.8 3.8E-20 8.2E-25 124.5 8.0 68 1-70 1-77 (153)
2 KOG0419|consensus 99.8 1.1E-19 2.5E-24 119.1 5.8 61 1-64 1-63 (152)
3 KOG0417|consensus 99.8 6.2E-19 1.3E-23 117.4 6.1 72 5-78 2-79 (148)
4 KOG0426|consensus 99.7 2.4E-18 5.2E-23 113.2 6.2 76 1-85 1-78 (165)
5 PTZ00390 ubiquitin-conjugating 99.7 1.6E-17 3.5E-22 111.5 7.4 65 5-72 3-75 (152)
6 PLN00172 ubiquitin conjugating 99.7 4.7E-17 1E-21 108.7 7.3 65 5-72 2-74 (147)
7 KOG0894|consensus 99.7 7.2E-17 1.6E-21 113.2 5.4 83 1-86 1-92 (244)
8 KOG0425|consensus 99.7 3.9E-16 8.5E-21 104.9 6.9 73 4-85 5-79 (171)
9 PF00179 UQ_con: Ubiquitin-con 99.6 2.2E-15 4.7E-20 99.0 5.4 64 8-73 1-72 (140)
10 KOG0421|consensus 99.5 1.3E-14 2.9E-19 96.6 6.3 68 4-74 29-104 (175)
11 cd00195 UBCc Ubiquitin-conjuga 99.5 2.6E-14 5.6E-19 94.1 6.7 55 7-64 2-58 (141)
12 KOG0418|consensus 99.5 4E-14 8.8E-19 97.5 5.7 68 1-70 1-77 (200)
13 smart00212 UBCc Ubiquitin-conj 99.5 1.2E-13 2.5E-18 91.3 6.0 65 7-73 1-73 (145)
14 KOG0424|consensus 99.4 3.2E-13 7E-18 89.8 7.1 74 1-77 1-86 (158)
15 KOG0427|consensus 99.3 1.2E-11 2.7E-16 81.4 6.5 74 1-76 12-91 (161)
16 KOG0422|consensus 99.2 6.5E-12 1.4E-16 83.2 3.8 70 5-83 3-73 (153)
17 KOG0428|consensus 99.2 1.2E-11 2.7E-16 88.7 4.5 79 3-85 10-96 (314)
18 KOG0423|consensus 98.9 5.2E-10 1.1E-14 76.8 1.7 57 4-61 10-70 (223)
19 KOG0416|consensus 98.6 5.8E-08 1.3E-12 66.4 5.2 66 1-73 1-74 (189)
20 KOG0429|consensus 97.8 6.4E-05 1.4E-09 53.6 6.2 66 7-73 22-94 (258)
21 KOG0895|consensus 97.7 9.1E-05 2E-09 62.0 5.5 58 4-64 282-341 (1101)
22 KOG0420|consensus 97.6 0.00015 3.2E-09 49.9 4.8 69 3-83 27-100 (184)
23 KOG0895|consensus 96.9 0.00081 1.8E-08 56.5 3.0 55 7-64 854-910 (1101)
24 KOG0896|consensus 96.5 0.0052 1.1E-07 40.8 4.3 57 6-64 7-68 (138)
25 smart00340 HALZ homeobox assoc 76.1 2.6 5.6E-05 22.7 1.9 16 5-20 20-35 (44)
26 KOG0309|consensus 60.5 34 0.00074 29.2 6.1 56 34-89 448-503 (1081)
27 PF09943 DUF2175: Uncharacteri 56.4 12 0.00026 23.7 2.3 27 36-67 2-28 (101)
28 PF05773 RWD: RWD domain; Int 50.3 53 0.0011 19.5 7.2 57 6-64 3-61 (113)
29 PF05743 UEV: UEV domain; Int 47.2 57 0.0012 20.8 4.5 29 34-64 32-60 (121)
30 PF12065 DUF3545: Protein of u 45.9 17 0.00036 20.9 1.6 13 6-18 36-48 (59)
31 COG1343 CRISPR-associated prot 41.1 85 0.0018 19.3 4.4 42 2-45 40-81 (89)
32 PRK04184 DNA topoisomerase VI 36.2 64 0.0014 26.0 4.1 57 5-61 296-362 (535)
33 PF05709 Sipho_tail: Phage tai 34.1 1.5E+02 0.0033 20.1 6.9 57 6-64 54-112 (249)
34 PF14824 Sirohm_synth_M: Siroh 33.5 60 0.0013 16.0 2.3 15 2-16 15-29 (30)
35 COG1888 Uncharacterized protei 30.0 69 0.0015 20.1 2.7 40 8-48 23-63 (97)
36 smart00591 RWD domain in RING 29.5 1.2E+02 0.0027 17.7 6.3 52 13-65 2-54 (107)
37 TIGR01052 top6b DNA topoisomer 27.8 1.5E+02 0.0032 23.8 4.8 57 5-61 290-357 (488)
38 PF12627 PolyA_pol_RNAbd: Prob 26.3 49 0.0011 18.0 1.5 18 4-21 22-39 (64)
39 COG4847 Uncharacterized protei 23.7 99 0.0021 19.5 2.6 30 34-68 4-33 (103)
40 PHA02102 hypothetical protein 22.5 65 0.0014 18.9 1.5 32 6-37 14-45 (72)
41 PF05798 Phage_FRD3: Bacteriop 22.3 1.8E+02 0.0039 17.2 4.0 32 14-45 15-46 (75)
42 PF06305 DUF1049: Protein of u 20.7 85 0.0018 17.3 1.8 15 5-19 49-63 (68)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.8e-20 Score=124.53 Aligned_cols=68 Identities=46% Similarity=0.742 Sum_probs=58.7
Q ss_pred Cch-HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccC
Q psy10015 1 MAG-SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIP 70 (90)
Q Consensus 1 Ms~-~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~ 70 (90)
|++ .|.+||+||+++|+++++++|++.+.+++|+++|+++|.||+ +||||.|++.| .||.+| +.|.++
T Consensus 1 ~~s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l--~fP~~YP~~PPkv~F~t~ 77 (153)
T COG5078 1 MSSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTL--EFPEDYPFKPPKVRFTTK 77 (153)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEE--ECCCCCCCCCCeeeeccC
Confidence 444 489999999999999999999999986669999999999999 99999999887 666655 566666
No 2
>KOG0419|consensus
Probab=99.79 E-value=1.1e-19 Score=119.12 Aligned_cols=61 Identities=44% Similarity=0.745 Sum_probs=56.6
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~ 64 (90)
||+.|.+||+|++++|+.+++.||++.|. ++|++.|.+.|.||+ ||+||+|+|.+ .|+++|
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~-~~niM~W~a~I~Gp~~tp~e~gtFkLtl--~FteeY 63 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPV-ENNIMEWNAVIFGPQDTPFEGGTFKLTL--EFTEEY 63 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCC-ccceeeeeeeEEcCCCCCcCCceEEEEE--Eccccc
Confidence 89999999999999999999999999997 679999999999999 99999998877 666665
No 3
>KOG0417|consensus
Probab=99.77 E-value=6.2e-19 Score=117.42 Aligned_cols=72 Identities=32% Similarity=0.578 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE----EecCCCcccccCccCCCchh
Q psy10015 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY----FFSKGNSGWYIPCLKSPSQT 78 (90)
Q Consensus 5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i----~f~~~~~~~~~~~~~~~~~~ 78 (90)
+.+||.||+++|+++++++|++.+. ++|+++|+++|.||. |||||.|+++|++ +|.+++|.|.|+ +++|+..
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~-~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~Tk-IyHPNI~ 79 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPV-GDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTK-IYHPNID 79 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCC-CCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecc-cccCCcC
Confidence 4579999999999999999999984 789999999999999 9999999999854 455556788888 4555543
No 4
>KOG0426|consensus
Probab=99.75 E-value=2.4e-18 Score=113.19 Aligned_cols=76 Identities=55% Similarity=0.945 Sum_probs=66.7
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCcccccCccCCCchh
Q psy10015 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQT 78 (90)
Q Consensus 1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~~ 78 (90)
|+..|.|||++|+++|..++++||.++|.++||.++|.+.|.||+ +|+||.|-.++ .||.+| +.+|+--
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l--~FP~DY-------PLsPPkm 71 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARL--SFPLDY-------PLSPPKM 71 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceee--ecCCCC-------CCCCCce
Confidence 788899999999999999999999999999999999999999999 89999998876 899998 4555555
Q ss_pred hhHhhhh
Q psy10015 79 KLLYSLF 85 (90)
Q Consensus 79 ~~~~~~~ 85 (90)
+|.-++|
T Consensus 72 ~Ftc~~f 78 (165)
T KOG0426|consen 72 RFTCEMF 78 (165)
T ss_pred eeecccc
Confidence 5555444
No 5
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.72 E-value=1.6e-17 Score=111.52 Aligned_cols=65 Identities=26% Similarity=0.428 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL 72 (90)
Q Consensus 5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~ 72 (90)
+++||+||+++++++++++|.+.+. ++|+++|+++|.||+ ||+||.|+++| .||++| +.|.|+.+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~-~~d~~~w~~~i~GP~~tpY~gg~f~~~i--~~p~~YP~~pP~v~F~t~i~ 75 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPD-PGNYRHFKILMEGPDGTPYEGGYYKLEL--FLPEQYPMEPPKVRFLTKIY 75 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEC-CCCccEEEEEEEcCCCCCCcCcEEEEEE--ECccccCCCCCEEEEecCCe
Confidence 5799999999999999999999985 679999999999998 89999998887 555554 56767643
No 6
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.70 E-value=4.7e-17 Score=108.66 Aligned_cols=65 Identities=32% Similarity=0.530 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL 72 (90)
Q Consensus 5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~ 72 (90)
|.+||+||+++|++++++++++.+. ++|+++|++.|.||+ ||+||.|+++| .||++| +.|.|+.+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~-~~nl~~w~~~i~GP~~tpyegg~f~~~i--~fp~~YP~~pP~v~f~t~i~ 74 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPS-DENLFRWTASIIGPSDSPYAGGVFFLSI--LFPPDYPFKPPKVQFTTKIY 74 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEC-CCChheEEEEEECCCCCCCCCCEEEEEE--ECCcccCCCCCEEEEecCcc
Confidence 4699999999999999999999985 679999999999999 89999998887 566554 56667643
No 7
>KOG0894|consensus
Probab=99.67 E-value=7.2e-17 Score=113.21 Aligned_cols=83 Identities=29% Similarity=0.437 Sum_probs=72.2
Q ss_pred Cc-hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCc------ccccCc
Q psy10015 1 MA-GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNS------GWYIPC 71 (90)
Q Consensus 1 Ms-~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~------~~~~~~ 71 (90)
|+ ..|.+||+||++.|.++|.+.|.+.| .++|+.+|+..|.||+ ||+||+|+-.+ .||+++. .+.||.
T Consensus 1 ma~k~a~kRl~keY~~l~k~Pv~~i~A~P-~p~nILEWHYvl~GpedTPy~GG~YhGkl--~FP~eyP~KPPaI~MiTPN 77 (244)
T KOG0894|consen 1 MASKAAVKRLQKEYRALCKDPVPYIVARP-NPNNILEWHYVLRGPEDTPYYGGYYHGKL--IFPPEYPFKPPAITMITPN 77 (244)
T ss_pred CcchHHHHHHHHHHHHHHhCCchhhccCC-CccceeeeEEEeeCCCCCCccCceeeeEE--eCCCCCCCCCCeeEEECCC
Confidence 44 37899999999999999999999999 5889999999999999 99999999887 6776652 556999
Q ss_pred cCCCchhhhHhhhhh
Q psy10015 72 LKSPSQTKLLYSLFN 86 (90)
Q Consensus 72 ~~~~~~~~~~~~~~~ 86 (90)
..+-+++|+|-|+..
T Consensus 78 GRFktntRLCLSiSD 92 (244)
T KOG0894|consen 78 GRFKTNTRLCLSISD 92 (244)
T ss_pred CceecCceEEEeccc
Confidence 999999999988653
No 8
>KOG0425|consensus
Probab=99.65 E-value=3.9e-16 Score=104.89 Aligned_cols=73 Identities=30% Similarity=0.493 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCcccccCccCCCchhhhH
Q psy10015 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLL 81 (90)
Q Consensus 4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~~~~~ 81 (90)
.+...|+++|++|++.+.++++++.+++.|+++|.+.|.||+ .|+||.|+..+ .||.+| +.+|+..||+
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m--~FP~dY-------P~sPP~~rF~ 75 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHM--KFPQDY-------PLSPPTFRFT 75 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEE--eCcccC-------CCCCCceeee
Confidence 467899999999999999999999998889999999999998 79999999987 999999 7999999999
Q ss_pred hhhh
Q psy10015 82 YSLF 85 (90)
Q Consensus 82 ~~~~ 85 (90)
+.||
T Consensus 76 s~mw 79 (171)
T KOG0425|consen 76 SKMW 79 (171)
T ss_pred hhhc
Confidence 9987
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.59 E-value=2.2e-15 Score=98.98 Aligned_cols=64 Identities=34% Similarity=0.611 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015 8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK 73 (90)
Q Consensus 8 RL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~ 73 (90)
||++|+++++++++.++.+.+.+++|+.+|++.|.||+ +|+||.|+++| .||++| +.|.|+.+|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i--~~p~~YP~~pP~v~f~t~i~H 72 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRI--SFPPDYPFSPPKVRFLTPIFH 72 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEE--EETTTTTTS--EEEESSS-SB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceecccccccc--ccccccccccccccccccccc
Confidence 89999999999999999999875459999999999977 99999998887 666664 466676443
No 10
>KOG0421|consensus
Probab=99.55 E-value=1.3e-14 Score=96.65 Aligned_cols=68 Identities=34% Similarity=0.633 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCC------CcccccCccCC
Q psy10015 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKG------NSGWYIPCLKS 74 (90)
Q Consensus 4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~------~~~~~~~~~~~ 74 (90)
...+||++||..|.....+||++.|. +||++.|.++|+||. +|+|-.|++++ .||.+ .|.|.|||+|+
T Consensus 29 ~V~KRLq~ELm~Lmms~~~gISAFP~-~dnlf~WvGtItGp~dTvyegl~yklSl--~Fp~~YPy~pP~vkFltpc~HP 104 (175)
T KOG0421|consen 29 SVTKRLQSELMGLMMSNTPGISAFPE-SDNLFKWVGTITGPKDTVYEGLKYKLSL--SFPNNYPYKPPTVKFLTPCFHP 104 (175)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccCcC-cCceeEEeeEeeCCCCccccCcEEEEEE--ecCCCCCCCCCeeEeeccccCC
Confidence 46799999999999999999999995 679999999999999 89999998887 66655 46888888874
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.53 E-value=2.6e-14 Score=94.05 Aligned_cols=55 Identities=44% Similarity=0.715 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~ 64 (90)
+||++|++++++++++++.+.+. ++|+++|+++|.||+ +|+||.|++.+ .||+++
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~-~~~~~~w~~~i~g~~~t~y~g~~~~~~~--~~p~~y 58 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDI--EFPEDY 58 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEEC-CCChhEEEEEEecCCCCCccCCEEEEEE--ECCCcc
Confidence 79999999999999999999985 569999999999996 89999998876 566665
No 12
>KOG0418|consensus
Probab=99.50 E-value=4e-14 Score=97.54 Aligned_cols=68 Identities=31% Similarity=0.405 Sum_probs=57.0
Q ss_pred CchHHHHHHHHHHHHhhhCC---CCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE----EecCCCcccccC
Q psy10015 1 MAGSALRRLMAEYKQLTINP---PEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY----FFSKGNSGWYIP 70 (90)
Q Consensus 1 Ms~~a~rRL~kEl~~l~~~~---~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i----~f~~~~~~~~~~ 70 (90)
||. +.+||+||.+++.+++ ..+|.+..++ +|+.+.++.|.||+ |||||.|.++|++ +|.+++|.|.|-
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn-~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~Tk 77 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVN-ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITK 77 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEcc-CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeee
Confidence 777 7899999999999998 6889999984 69999999999999 9999999998854 444555555554
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.47 E-value=1.2e-13 Score=91.27 Aligned_cols=65 Identities=35% Similarity=0.585 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCccC
Q psy10015 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCLK 73 (90)
Q Consensus 7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~~ 73 (90)
+||++|++++++++++++.+.+.+++|+++|++.|.||+ +|+||.|.+.+ .||+++ +.|.+|++|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l--~~p~~yP~~pP~v~f~~~i~H 73 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTI--EFPPDYPFKPPKVKFITKIYH 73 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEE--ECCcccCCCCCEEEEeCCceE
Confidence 599999999999999999998865459999999999998 89999997766 666654 456666443
No 14
>KOG0424|consensus
Probab=99.45 E-value=3.2e-13 Score=89.80 Aligned_cols=74 Identities=34% Similarity=0.502 Sum_probs=62.3
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEeecCC----CCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccc
Q psy10015 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNE----ENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWY 68 (90)
Q Consensus 1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~----~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~ 68 (90)
||+.+..||+.|-+.+.++.+-|+.+.|+.. .|++.|.++|.||. +||||.|.+.+ .||+++ +.|.
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v--~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTV--NFPDDYPSSPPKCKFK 78 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEE--eCCccCCCCCCccccC
Confidence 8889999999999999999999999988642 47999999999999 89999998887 666554 5677
Q ss_pred cCccCCCch
Q psy10015 69 IPCLKSPSQ 77 (90)
Q Consensus 69 ~~~~~~~~~ 77 (90)
+| +++|++
T Consensus 79 ~p-l~HPNV 86 (158)
T KOG0424|consen 79 PP-LFHPNV 86 (158)
T ss_pred CC-CcCCCc
Confidence 77 666654
No 15
>KOG0427|consensus
Probab=99.28 E-value=1.2e-11 Score=81.42 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=59.8
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE----EecCCCcccccCccCC
Q psy10015 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY----FFSKGNSGWYIPCLKS 74 (90)
Q Consensus 1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i----~f~~~~~~~~~~~~~~ 74 (90)
|+..|.+||+|||.+++.+++.|+.... .||+..|.+.+.|.+ .|+|+.|.|.+++ +|..++|-|.-|++.+
T Consensus 12 ls~~at~RLqKEl~e~q~~pP~G~~~~v--~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~H 89 (161)
T KOG0427|consen 12 LSKIATNRLQKELSEWQNNPPTGFKHRV--TDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLH 89 (161)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcceeec--ccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCC
Confidence 3456889999999999999999999874 469999999999988 7999999888742 3334456777776666
Q ss_pred Cc
Q psy10015 75 PS 76 (90)
Q Consensus 75 ~~ 76 (90)
|-
T Consensus 90 PH 91 (161)
T KOG0427|consen 90 PH 91 (161)
T ss_pred Cc
Confidence 63
No 16
>KOG0422|consensus
Probab=99.24 E-value=6.5e-12 Score=83.23 Aligned_cols=70 Identities=27% Similarity=0.324 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC-CCCCCeEEEEEEEEecCCCcccccCccCCCchhhhHhh
Q psy10015 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYS 83 (90)
Q Consensus 5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~-~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~~~~~~~ 83 (90)
+.+||+|||.+|+++....+.-..++++|+..|++.|.+-. ||.-|.|+++| +||.+| ++.|+..+|++.
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I--~fp~eY-------PFKPP~i~f~tk 73 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEI--DFPVEY-------PFKPPKIKFKTK 73 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEecCCCCCccCcceEEEe--eCCCCC-------CCCCCeeeeeee
Confidence 57999999999999998877766667889999999998444 89999998887 777777 455555554443
No 17
>KOG0428|consensus
Probab=99.22 E-value=1.2e-11 Score=88.68 Aligned_cols=79 Identities=25% Similarity=0.377 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCCc------ccccCccCC
Q psy10015 3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGNS------GWYIPCLKS 74 (90)
Q Consensus 3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~------~~~~~~~~~ 74 (90)
+.+.|||+||.++|+ +|-+.+.+.|. +||+++|+.+|.||. .++||+|+-+| .||.+|. --.||+..+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~pl-EdNlFEWhFtiRGp~dtdFeGGiYHGRI--~lPadYPmKPPs~iLLTpNGRF 85 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPL-EDNLFEWHFTIRGPPDTDFEGGIYHGRI--VLPADYPMKPPSIILLTPNGRF 85 (314)
T ss_pred CHHHHHHHHHHHHhc-Cchhhhhhccc-hhceeeEEEEeeCCCCCCccCceeeeeE--ecCCCCCCCCCeEEEEcCCCce
Confidence 468899999999998 88888998887 789999999999999 79999999987 7777762 123666665
Q ss_pred CchhhhHhhhh
Q psy10015 75 PSQTKLLYSLF 85 (90)
Q Consensus 75 ~~~~~~~~~~~ 85 (90)
-...|-|-|++
T Consensus 86 E~nkKiCLSIS 96 (314)
T KOG0428|consen 86 EVNKKICLSIS 96 (314)
T ss_pred eeCceEEEEec
Confidence 55555555543
No 18
>KOG0423|consensus
Probab=98.90 E-value=5.2e-10 Score=76.80 Aligned_cols=57 Identities=33% Similarity=0.480 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEE--Eec
Q psy10015 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY--FFS 61 (90)
Q Consensus 4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i--~f~ 61 (90)
...+.++||++.|..+|++||.+.+ +++|+....+.|.||. ||++|.|++.+.+ .||
T Consensus 10 ~vik~~~kEl~~l~~~PPdGIKV~~-NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP 70 (223)
T KOG0423|consen 10 NVIKQLAKELKSLDESPPDGIKVVV-NEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFP 70 (223)
T ss_pred HHHHHHHHHHHhcccCCCCceEEec-ChHHhHHHHhhccCCCCCccccceeeehhhhcCCCC
Confidence 4578999999999999999999988 6789999999999999 9999999988754 455
No 19
>KOG0416|consensus
Probab=98.65 E-value=5.8e-08 Score=66.44 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC------cccccCcc
Q psy10015 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN------SGWYIPCL 72 (90)
Q Consensus 1 Ms~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~------~~~~~~~~ 72 (90)
||+ ..||+..++.+|.... ..+..+ ++++.++++.+.||. +|+||.|++++ ..|.+| ++|.+-++
T Consensus 1 ms~-~~rRid~Dv~KL~~s~---yeV~~i-nd~m~ef~V~f~GP~ds~YegGvWkv~V--~lPd~YP~KSPSIGFvnKIf 73 (189)
T KOG0416|consen 1 MSS-GKRRIDTDVMKLLMSD---YEVTII-NDGMQEFYVKFHGPKDSPYEGGVWKVRV--ELPDNYPFKSPSIGFVNKIF 73 (189)
T ss_pred CCC-cccchhhHHHHHHhcC---CeEEEe-cCcccEEEEEeeCCCCCcccCceEEEEE--ECCCCCCCCCCcccceeecc
Confidence 554 4689999999986543 555554 567999999999999 99999998887 556554 46666644
Q ss_pred C
Q psy10015 73 K 73 (90)
Q Consensus 73 ~ 73 (90)
|
T Consensus 74 H 74 (189)
T KOG0416|consen 74 H 74 (189)
T ss_pred C
Confidence 4
No 20
>KOG0429|consensus
Probab=97.83 E-value=6.4e-05 Score=53.60 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC-CCCCCeEEEEEEE--EecCCC----cccccCccC
Q psy10015 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNLCY--FFSKGN----SGWYIPCLK 73 (90)
Q Consensus 7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~-~Yegg~f~l~i~i--~f~~~~----~~~~~~~~~ 73 (90)
--|..|+....+.+.+||.+.| +-.|-..|-+.|.+-. .|.||.|++.|.+ +||++. +.|.++-+|
T Consensus 22 y~llAEf~lV~~ekL~gIyviP-Syan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfH 94 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIP-SYANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFH 94 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcc-cccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeeccccc
Confidence 3466778888889999999999 4678999999999888 8999999999987 788663 467677443
No 21
>KOG0895|consensus
Probab=97.66 E-value=9.1e-05 Score=61.96 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 4 ~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~ 64 (90)
...+|+++|++-+.++.++++.+.+ .+.++...++.|.||+ ||++|.|.++| +||..|
T Consensus 282 ~~skrv~ke~~llskdlpEgifvrp-~e~RMd~I~alIig~~gtPy~~glf~Fdi--q~P~~y 341 (1101)
T KOG0895|consen 282 NWSKKVAKELKLLSKDLPEGIFVRP-DEGRMDLIKALIIGPDGTPYADGLFLFDI--QFPDTY 341 (1101)
T ss_pred hhHHHHHHHhhhhcccCCCCccccc-cccccceeeeEEecCCCCCCcCCceeeEe--ecCCCC
Confidence 3568999999999999999999888 4778999999999999 99999998665 888865
No 22
>KOG0420|consensus
Probab=97.58 E-value=0.00015 Score=49.90 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhhhCCCCCEEEeecC-CCCce--EEEEEEeccC--CCCCCeEEEEEEEEecCCCcccccCccCCCch
Q psy10015 3 GSALRRLMAEYKQLTINPPEGIIAGPVN-EENFF--EWEALITGNK--LYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQ 77 (90)
Q Consensus 3 ~~a~rRL~kEl~~l~~~~~~~i~~~p~~-~~nl~--~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~ 77 (90)
+.++-|+++|..+++ -+++++....+ .+++. +++.+|. |+ .|+||.|++.+ ++|+.| +|-|+-
T Consensus 27 s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~--~v~~~Y-------p~~PPK 94 (184)
T KOG0420|consen 27 SAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKF--KVPNAY-------PHEPPK 94 (184)
T ss_pred cHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEE--ECCCCC-------CCCCCe
Confidence 345667777766664 55555532222 23333 5899998 76 69999998886 777777 455554
Q ss_pred hhhHhh
Q psy10015 78 TKLLYS 83 (90)
Q Consensus 78 ~~~~~~ 83 (90)
.|=++.
T Consensus 95 VkCltk 100 (184)
T KOG0420|consen 95 VKCLTK 100 (184)
T ss_pred eeeeec
Confidence 444333
No 23
>KOG0895|consensus
Probab=96.87 E-value=0.00081 Score=56.49 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=46.1
Q ss_pred HHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 7 rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~ 64 (90)
+..+.|++-|..+.+.+|.+.-. ++.+.-.++.|.||. ||++|.|.++| .||.+|
T Consensus 854 ~~~~~~~~~~~~~~~~~~~vr~~-e~r~d~~~~~~~g~~~tpy~~~~f~fd~--~~~~~y 910 (1101)
T KOG0895|consen 854 KKVQTEWKILPLSLPSGIFVRAY-EDRMDLLRAVIVGAAGTPYQDGLFFFDF--QFPQDY 910 (1101)
T ss_pred HHHHHHHHhhhccCCCceEEEec-hHHHHHHHHHhhCCCCCccccceEEEEe--ecCCCC
Confidence 44556677777788999998874 778888899999999 99999999987 899988
No 24
>KOG0896|consensus
Probab=96.53 E-value=0.0052 Score=40.76 Aligned_cols=57 Identities=19% Similarity=0.325 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhCCCCC-EEEeecCCCC--ceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015 6 LRRLMAEYKQLTINPPEG-IIAGPVNEEN--FFEWEALITGNK--LYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 6 ~rRL~kEl~~l~~~~~~~-i~~~p~~~~n--l~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~ 64 (90)
.-||.+|+.+=++.-.++ ++-...+++| +..|...|.||+ +||+.+|-|+| +.-++|
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI--~Cgp~Y 68 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKI--ECGPKY 68 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEE--ecCCCC
Confidence 346777777665544333 4434433344 789999999999 89999998877 444444
No 25
>smart00340 HALZ homeobox associated leucin zipper.
Probab=76.12 E-value=2.6 Score=22.71 Aligned_cols=16 Identities=31% Similarity=0.295 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhhCC
Q psy10015 5 ALRRLMAEYKQLTINP 20 (90)
Q Consensus 5 a~rRL~kEl~~l~~~~ 20 (90)
-.+||++|+++|....
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3689999999998643
No 26
>KOG0309|consensus
Probab=60.49 E-value=34 Score=29.23 Aligned_cols=56 Identities=9% Similarity=-0.056 Sum_probs=40.7
Q ss_pred ceEEEEEEeccCCCCCCeEEEEEEEEecCCCcccccCccCCCchhhhHhhhhhhhc
Q psy10015 34 FFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWYIPCLKSPSQTKLLYSLFNILL 89 (90)
Q Consensus 34 l~~w~~~I~GP~~Yegg~f~l~i~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (90)
-+...+.+.||.--++|+-.+++.+.||.+|.-=.+|-|..-..+-+..++++-||
T Consensus 448 ~Rsctvsln~p~~~~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~s~~t~~~~~~~l 503 (1081)
T KOG0309|consen 448 DRSCTVSLNCPNHRVDDYIFLRMLVKFPANYPNNAAPSFQFENPSTITSTMKAKLL 503 (1081)
T ss_pred cceEEEEecCCCCccccceeEEEEEeccccCCCCCCCceEEecCccccHHHHHHHH
Confidence 46667778888855688888999999999996546676666666666666555444
No 27
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=56.39 E-value=12 Score=23.70 Aligned_cols=27 Identities=30% Similarity=0.680 Sum_probs=21.8
Q ss_pred EEEEEEeccCCCCCCeEEEEEEEEecCCCccc
Q psy10015 36 EWEALITGNKLYEWMPFALNLCYFFSKGNSGW 67 (90)
Q Consensus 36 ~w~~~I~GP~~Yegg~f~l~i~i~f~~~~~~~ 67 (90)
+|.+.|=|-+.|+|..|.+- ++..|+|
T Consensus 2 kWkC~iCg~~I~~gqlFTF~-----~kG~VH~ 28 (101)
T PF09943_consen 2 KWKCYICGKPIYEGQLFTFT-----KKGPVHY 28 (101)
T ss_pred ceEEEecCCeeeecceEEEe-----cCCcEeH
Confidence 69999999999999988543 4567777
No 28
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=50.32 E-value=53 Score=19.51 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015 6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~ 64 (90)
..+...|+..|+.--+..+ ... ...+-..+.+.+.+.. .-..+...+.+.+.||++|
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~Y 61 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEI-ESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGY 61 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSS-TSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SST
T ss_pred HHHHHHHHHHHHHHcCCCc-ccc-ccCCCCceeeeecccccccccccceeEEEEEeCCCcC
Confidence 4567888888887655555 111 2345566677774333 4556667888888999999
No 29
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=47.22 E-value=57 Score=20.81 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=21.9
Q ss_pred ceEEEEEEeccCCCCCCeEEEEEEEEecCCC
Q psy10015 34 FFEWEALITGNKLYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 34 l~~w~~~I~GP~~Yegg~f~l~i~i~f~~~~ 64 (90)
+....++| |-.|+|..|.+-+.+-+|.++
T Consensus 32 LL~L~Gti--pi~y~g~~y~iPi~Iwlp~~y 60 (121)
T PF05743_consen 32 LLCLYGTI--PITYKGSTYNIPICIWLPENY 60 (121)
T ss_dssp EEEEEEEE--EECCTTCCEEEEEEEEE-TTT
T ss_pred EEEEecCc--ccccCCcccceeEEEEEcccC
Confidence 44555554 457999999999999999887
No 30
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=45.95 E-value=17 Score=20.87 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhh
Q psy10015 6 LRRLMAEYKQLTI 18 (90)
Q Consensus 6 ~rRL~kEl~~l~~ 18 (90)
.+||+|||+++--
T Consensus 36 r~rL~kEL~d~D~ 48 (59)
T PF12065_consen 36 RQRLRKELQDMDM 48 (59)
T ss_pred HHHHHHHHHHccc
Confidence 4799999999853
No 31
>COG1343 CRISPR-associated protein Cas2 [Defense mechanisms]
Probab=41.11 E-value=85 Score=19.27 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=30.6
Q ss_pred chHHHHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC
Q psy10015 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK 45 (90)
Q Consensus 2 s~~a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~ 45 (90)
+.+...+|.+++.++.+.....|.+.+... -........|++
T Consensus 40 ~~~~~~~l~~~~~kii~~~~Dsi~iy~~~~--~~~~~~~~iG~~ 81 (89)
T COG1343 40 TPADLEKLKRRLKKIIDEDEDSIRIYPLRR--RAARTREVIGPE 81 (89)
T ss_pred CHHHHHHHHHHHHhhhccccceEEEEEccc--hhhccceeccCC
Confidence 445678999999999998889999988643 233344556776
No 32
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=36.22 E-value=64 Score=26.02 Aligned_cols=57 Identities=25% Similarity=0.434 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEeecCCCCc---------eEEEEEEeccC-CCCCCeEEEEEEEEec
Q psy10015 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENF---------FEWEALITGNK-LYEWMPFALNLCYFFS 61 (90)
Q Consensus 5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl---------~~w~~~I~GP~-~Yegg~f~l~i~i~f~ 61 (90)
-+.||.+=+++..-..|++-++.|..++++ -+|.+.++.|+ .|.|+.|.++.-+-+-
T Consensus 296 ~~~~l~~~~~~~~~~~pp~~~lspige~~i~~gl~~~~~p~f~~~~tr~p~~y~g~pfiVE~~iayG 362 (535)
T PRK04184 296 ELERLVEAFKKYKFMAPPTACLSPIGEELIEKGLKKILKPEFVAAVTRKPKVYSGHPFIVEVGIAYG 362 (535)
T ss_pred HHHHHHHHHHhccCcCCCCccCCCCCHHHHHHHHHHhcCccEEEEeccCCcccCCCCeEEEEEeeec
Confidence 456777777777555555557778766543 34888887777 8999999999988553
No 33
>PF05709 Sipho_tail: Phage tail protein; InterPro: IPR008841 This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 4DIV_X 2X8K_C.
Probab=34.09 E-value=1.5e+02 Score=20.06 Aligned_cols=57 Identities=5% Similarity=-0.092 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC--CCCCCeEEEEEEEEecCCC
Q psy10015 6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCYFFSKGN 64 (90)
Q Consensus 6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~--~Yegg~f~l~i~i~f~~~~ 64 (90)
..++.+++.++-..... ..+.. +++.-..|.+.+.+.. ........+.+.+.+++++
T Consensus 54 ~~~~~~~l~~~l~~~~~-~~l~f-~d~p~~~y~~~~~~~~~~~~~~~~~~~ti~f~c~dPy 112 (249)
T PF05709_consen 54 FEQKRRELASWLNPKEP-VKLIF-DDDPDKYYYAKVSGSPDPDEGNNSGTFTITFTCPDPY 112 (249)
T ss_dssp HHHHHHHHHHHH--SS--EEEEE-TTSTT-EEEEEEEEEEE--SSSSCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCcCCC-EEEEE-ECCCCEEEEEEECCcccccccceeEEEEEEEEECCce
Confidence 35667777777644433 66666 3556788888887765 2223444555555655554
No 34
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=33.49 E-value=60 Score=16.04 Aligned_cols=15 Identities=20% Similarity=0.217 Sum_probs=10.2
Q ss_pred chHHHHHHHHHHHHh
Q psy10015 2 AGSALRRLMAEYKQL 16 (90)
Q Consensus 2 s~~a~rRL~kEl~~l 16 (90)
|...+++|++|+++.
T Consensus 15 sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 15 SPRLARLIRKEIERL 29 (30)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHh
Confidence 335678888888764
No 35
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.03 E-value=69 Score=20.07 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhCCCCCEEEeecCCCCceEEEEEEeccC-CCC
Q psy10015 8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYE 48 (90)
Q Consensus 8 RL~kEl~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~-~Ye 48 (90)
-+.+++.+|+.-..-+|++.-+ |-......++|.|++ .|+
T Consensus 23 e~A~~lskl~gVegVNItv~ei-D~et~~~~itIeG~~ldyd 63 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEI-DVETENLKITIEGTNLDYD 63 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEe-eehhcceEEEEEcCCCCHH
Confidence 4567777776655666777665 346788899999998 553
No 36
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=29.48 E-value=1.2e+02 Score=17.70 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=25.5
Q ss_pred HHHhhhCCCCCEEEeecCCCCceEEEEEEeccC-CCCCCeEEEEEEEEecCCCc
Q psy10015 13 YKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNLCYFFSKGNS 65 (90)
Q Consensus 13 l~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~-~Yegg~f~l~i~i~f~~~~~ 65 (90)
+..|+.--+..+.... ++.+...+.+.+..+. .-+...-.+.+.+.||++|.
T Consensus 2 ieaL~sIy~~~~~~~~-~~~~~~~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP 54 (107)
T smart00591 2 LEALESIYPEDFEVID-EDARIPEITIKLSPSSDEGEDQYVSLTLQVKLPENYP 54 (107)
T ss_pred hHHHHhhccceeEEec-CCCCccEEEEEEecCCCCCCccceEEEEEEECCCCCC
Confidence 4444444444444332 1222224445543221 12445566777889999984
No 37
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=27.78 E-value=1.5e+02 Score=23.76 Aligned_cols=57 Identities=19% Similarity=0.363 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhCCCCCEEEeecCCCCc---------eEEEEEEeccC-CCCCC-eEEEEEEEEec
Q psy10015 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENF---------FEWEALITGNK-LYEWM-PFALNLCYFFS 61 (90)
Q Consensus 5 a~rRL~kEl~~l~~~~~~~i~~~p~~~~nl---------~~w~~~I~GP~-~Yegg-~f~l~i~i~f~ 61 (90)
-+.||.+=+++..-..|+.-++.|..++++ -+|.+.++.|+ .|.|| .|.++.-+-+-
T Consensus 290 ~~~~l~~~~~~~~~~~P~~~~lspige~~i~~gl~~~~~p~f~~~~tr~p~~y~g~~pfiVE~~iayG 357 (488)
T TIGR01052 290 EAEKIVNAFKEMKFMAPPTDGLSPIGEENIEKGLKEILQPEFVGAVTRSPKTYRGGIPFIVEVGIAYG 357 (488)
T ss_pred HHHHHHHHHHhcCCCCCCccccCCCCHHHHHHHHHHhcCccEEEEeccCCccccCCCCeEEEEeeecC
Confidence 356666666665545566666677665443 35777887777 89996 99999887544
No 38
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=26.32 E-value=49 Score=18.02 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhCCC
Q psy10015 4 SALRRLMAEYKQLTINPP 21 (90)
Q Consensus 4 ~a~rRL~kEl~~l~~~~~ 21 (90)
.+..||..|+.++-..+.
T Consensus 22 is~ERi~~El~kil~~~~ 39 (64)
T PF12627_consen 22 ISKERIREELEKILSSPN 39 (64)
T ss_dssp S-HHHHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 457899999999976553
No 39
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.69 E-value=99 Score=19.52 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=23.7
Q ss_pred ceEEEEEEeccCCCCCCeEEEEEEEEecCCCcccc
Q psy10015 34 FFEWEALITGNKLYEWMPFALNLCYFFSKGNSGWY 68 (90)
Q Consensus 34 l~~w~~~I~GP~~Yegg~f~l~i~i~f~~~~~~~~ 68 (90)
+-+|++.+-|-+.-+|..|.+. ++..|+|.
T Consensus 4 lkewkC~VCg~~iieGqkFTF~-----~kGsVH~e 33 (103)
T COG4847 4 LKEWKCYVCGGTIIEGQKFTFT-----KKGSVHYE 33 (103)
T ss_pred cceeeEeeeCCEeeeccEEEEe-----eCCcchHH
Confidence 6789999988888889888653 57888883
No 40
>PHA02102 hypothetical protein
Probab=22.50 E-value=65 Score=18.87 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhCCCCCEEEeecCCCCceEE
Q psy10015 6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEW 37 (90)
Q Consensus 6 ~rRL~kEl~~l~~~~~~~i~~~p~~~~nl~~w 37 (90)
...|.+|.++|.....-|+.+.-.++-++..|
T Consensus 14 LqkLl~eV~dlAse~~yGvein~~nev~f~DW 45 (72)
T PHA02102 14 LQKLLKEVKDLASEQDYGVEINDDNEVRFEDW 45 (72)
T ss_pred HHHHHHHHHHHhhhhccceeeCCCCcEeHHHh
Confidence 45677888888888888877643222245566
No 41
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=22.33 E-value=1.8e+02 Score=17.17 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=21.5
Q ss_pred HHhhhCCCCCEEEeecCCCCceEEEEEEeccC
Q psy10015 14 KQLTINPPEGIIAGPVNEENFFEWEALITGNK 45 (90)
Q Consensus 14 ~~l~~~~~~~i~~~p~~~~nl~~w~~~I~GP~ 45 (90)
.++.++.-|.+++..+.++......+.|.||-
T Consensus 15 eEvIRNRyPelsi~si~d~~f~~~~i~i~GPl 46 (75)
T PF05798_consen 15 EEVIRNRYPELSITSIQDSKFCSIQIVIEGPL 46 (75)
T ss_pred HHHHHccCCceEEEEeecCCcceEEEEEeccH
Confidence 45667777777776554555566667788886
No 42
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.71 E-value=85 Score=17.32 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhC
Q psy10015 5 ALRRLMAEYKQLTIN 19 (90)
Q Consensus 5 a~rRL~kEl~~l~~~ 19 (90)
..+|++||++++++.
T Consensus 49 ~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 49 RIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777777654
Done!