RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10015
(90 letters)
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP:
d.20.1.1
Length = 165
Score = 71.6 bits (176), Expect = 1e-17
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
M+ +A +RL+ E +QL + P GI+AGP +E N F W+ LI G Y F L
Sbjct: 1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKL 58
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha,
ligase, UBL conjugation pathway, endo reticulum,
membrane, metal-binding; 1.80A {Homo sapiens} PDB:
3fsh_A 2cyx_A 2kly_A
Length = 164
Score = 69.3 bits (170), Expect = 9e-17
Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 2/57 (3%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
AG+AL+RLMAEYKQLT+NPPEGI+AGP+NEENFFEWEALI G + +E+ F L
Sbjct: 1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAIL 57
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1
PDB: 1pzv_A
Length = 172
Score = 69.0 bits (169), Expect = 2e-16
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
+ L + +L NP EG AG +++ + + WE LI G LYE F +L
Sbjct: 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHL 71
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 67.1 bits (164), Expect = 9e-16
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNL 56
S+ + L+ E K L P EG V+E + + WE I G YE F L
Sbjct: 7 SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARL 61
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 64.3 bits (157), Expect = 8e-15
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
M+ A RRLM ++K++ + P G+ A P+ +N W A+I G + YE F L L
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLL 57
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation,
ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1
PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 63.8 bits (156), Expect = 8e-15
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
M+ A +RLM ++K+L +PP GI P + N W A+I G + ++ F L+L
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSL 57
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 63.5 bits (155), Expect = 2e-14
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
M G A L ++ L N +GI A PV E+ EWE I G N +++ + F L +
Sbjct: 20 MHGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTI 76
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 61.1 bits (149), Expect = 1e-13
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITGNK--LYEWMPFAL 54
M+ L+RL E K+ + P G A PV + + +WEA I G + + + +
Sbjct: 1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPI 60
Query: 55 NL 56
+
Sbjct: 61 TV 62
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 61.2 bits (149), Expect = 1e-13
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 6/62 (9%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITGNK--LYEWMPFAL 54
+ RL E KQ + P G A P + W+ I G +E + L
Sbjct: 7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 66
Query: 55 NL 56
+
Sbjct: 67 TM 68
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 60.0 bits (146), Expect = 3e-13
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
S +R+M E + + +P I V+E + + G
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLG 40
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A
3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 60.0 bits (146), Expect = 4e-13
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITG--NKLYEWMPFAL 54
M+G AL RL E K + P G +A P N WE I G +E F L
Sbjct: 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKL 63
Query: 55 NL 56
+
Sbjct: 64 RM 65
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 60.1 bits (146), Expect = 4e-13
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLC 57
G +RL E L ++ +GI A P +N F+W I G +YE + + L+L
Sbjct: 27 ARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLE 84
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 60.6 bits (147), Expect = 6e-13
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
S +R+M E + + +P I V+E + + G
Sbjct: 2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLG 41
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 59.2 bits (144), Expect = 7e-13
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
+A RRLM E +++ + V+E N W+ LI + Y+ F + +
Sbjct: 2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEI 55
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 58.8 bits (143), Expect = 8e-13
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
+ +R + E LT +PP+GI P NEE+ + + I G
Sbjct: 10 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEG 51
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum,
ligase, UBL conjugation pathway, structural genomics
consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 59.4 bits (144), Expect = 9e-13
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
+A +RL +Y ++ +P I A P+ N EW ++ G
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRG 52
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 58.4 bits (142), Expect = 1e-12
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
S +RL E + L ++ GI A P +N F+W A + G + +YE + + L L
Sbjct: 8 HSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTL 62
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 58.4 bits (142), Expect = 1e-12
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
+ A R++ E + L PP + ++ N W AL+ ++ Y F L +
Sbjct: 2 SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRI 57
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 57.2 bits (139), Expect = 2e-12
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
G+A R+ E NPP N W G N +Y + L +
Sbjct: 5 GNANYRIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLKI 59
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 57.7 bits (140), Expect = 3e-12
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
AL+R+ E L+ +PP AGPV ++ F W+A I G
Sbjct: 18 YFQGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMG 59
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 58.2 bits (141), Expect = 3e-12
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
+ ++ +R+ E +T++PP AGP +N +EW + I G +YE F L++
Sbjct: 45 LLSTSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDI 101
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 59.5 bits (144), Expect = 3e-12
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
AL+R+ E L +PP AGPV ++ F W+A I G
Sbjct: 1 GAMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMG 41
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium,
SGC, ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 58.6 bits (142), Expect = 3e-12
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
L RL E K + + I A + NFFEW I G
Sbjct: 20 QGSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKG 61
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 56.9 bits (138), Expect = 3e-12
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 3 GSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
G+A R+ E NPP N W G N +Y + + +
Sbjct: 19 GNANYRIQKELNNFLKNPPINCTIDVH-PSNIRIWIVQYVGLENTIYANEVYKIKI 73
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo
sapiens} SCOP: d.20.1.1
Length = 136
Score = 56.6 bits (137), Expect = 4e-12
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVN-EENFFEWEALITG--NKLYEWMPFALNL 56
S +RL E L +PP G+ + + + +W + G LYE F L
Sbjct: 22 SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 77
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome
pathway, structural genomics, protein structure
initiative; 1.10A {Caenorhabditis elegans} SCOP:
d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B*
4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A
3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A
...
Length = 150
Score = 56.5 bits (137), Expect = 6e-12
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
+ AL+R+ E + L +PP AGPV ++ F W+A I G
Sbjct: 2 SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMG 42
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex,
peroxisomal protein; 2.60A {Saccharomyces cerevisiae}
PDB: 2y9p_A 2y9o_A
Length = 172
Score = 57.0 bits (138), Expect = 6e-12
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 1 MAGSALRRLMAEYKQL---------TINPPEGII--AGPVNEENFFEWEALITG--NKLY 47
MA + + R++ EYK + NP GII P++E + +WEA+I+G + Y
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 48 EWMPFALNL 56
E F + +
Sbjct: 63 ENHQFRILI 71
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase,
UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 56.9 bits (138), Expect = 7e-12
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
AL+R+ E L +PP AGPV ++ F W+A I G
Sbjct: 16 RGSMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMG 57
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 55.0 bits (133), Expect = 2e-11
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
+ RR++ E ++L P GI A P E N + +I G + +E F L L
Sbjct: 3 SAGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLEL 58
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 54.2 bits (131), Expect = 6e-11
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
A S +R++ E ++L +P GI A P ++N ++ I G
Sbjct: 3 AASLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEG 43
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme;
structural genomics consortium, HSCP150, ligase, SGC;
2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 53.9 bits (130), Expect = 9e-11
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
RL E L PP GI ++ + A I G
Sbjct: 4 QRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILG 42
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 51.8 bits (125), Expect = 3e-10
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
RR+ E + L PP GI+A PV EN+ + LI G YE + L L
Sbjct: 4 RRITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKLEL 54
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 49.7 bits (119), Expect = 3e-09
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEE---NFFEWEALITG 43
+ RL+ E ++ +G ++ + ++ W +I G
Sbjct: 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIG 67
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 49.6 bits (119), Expect = 4e-09
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALI 41
+ L+ E +L N P + ++ +
Sbjct: 14 VRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV 51
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 50.1 bits (119), Expect = 5e-09
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGP---VNEENFFEWEALITG--NKLYEWMPFALNL 56
+ RRL E L+ + P + +EE + LITG + Y F ++
Sbjct: 76 ARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDV 133
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 48.6 bits (116), Expect = 8e-09
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPV---NEENFFEWEALITG--NKLYEWMPFALN 55
+ RL+ E ++ +G ++ + + W +I G +YE ++L
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 56 L 56
+
Sbjct: 92 I 92
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 47.3 bits (113), Expect = 2e-08
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 1 MAGSALRRLMAEYKQLTINPPE---GIIAGPVNEENFFEWEALITG--NKLYEWMPFALN 55
MA A++R+ E+K++ + I V +ENF E I G + YE + L
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLE 63
Query: 56 L 56
+
Sbjct: 64 I 64
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 47.1 bits (112), Expect = 4e-08
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 11/54 (20%)
Query: 1 MAGSALRRLMAEYKQL-----------TINPPEGIIAGPVNEENFFEWEALITG 43
M + +R++ + K L + P V+ + + W +
Sbjct: 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKA 58
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 47.4 bits (113), Expect = 4e-08
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 1 MAGSALRRLMAEYKQLT---INPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALN 55
MA A++R+ E+K++ I V +ENF E I G + YE + L
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLE 60
Query: 56 L 56
+
Sbjct: 61 I 61
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A
{Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 46.8 bits (111), Expect = 5e-08
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 2 AGSALRRLMAEYKQLTINPPE--GIIAGPVNEENFFEWEALITG 43
+ A RLM E + + + GI + + ++ ++W +
Sbjct: 25 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQK 68
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 44.2 bits (105), Expect = 2e-07
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 1 MAGS-ALRRLMAEYKQLTIN-PPEGIIAGPVNEE--NFFEWEALITG--NKLYEWMPFAL 54
M+ RL+ E ++ PE G + + +W I G + +E ++L
Sbjct: 2 MSKVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSL 61
Query: 55 NL 56
++
Sbjct: 62 SI 63
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 44.6 bits (106), Expect = 3e-07
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 5 ALRRLMAEYKQL-TINPPEGIIAGPVNEE--NFFEWEALITG--NKLYEWMPFALNL 56
RL+ E ++ N EG+ G + + W I G ++E ++L +
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTI 78
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 45.3 bits (107), Expect = 3e-07
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 1 MAGSALRRLMAEYKQLTINPPE---GIIAGPVNEENFFEWEALITG--NKLYEWMPFALN 55
MA A++R+ E+K++ + I V +ENF E I G + YE + L
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLE 112
Query: 56 L 56
+
Sbjct: 113 I 113
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme
E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 42.7 bits (101), Expect = 1e-06
Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
MA +A R+ + +L N P+ + ++ ++ +I ++ Y+ F +
Sbjct: 3 MASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSF 57
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating
tgtwinscan_2721, structural genomics, structural
genomics consortium, SGC; 2.11A {Toxoplasma gondii}
SCOP: d.20.1.1
Length = 193
Score = 42.1 bits (99), Expect = 2e-06
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 14/53 (26%)
Query: 4 SALRRLMAEYKQL-------------TINPPEGIIAGPVNEENFFEWEALITG 43
RL+ E + T + G+ A V + W I G
Sbjct: 32 REQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAG 83
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 40.5 bits (95), Expect = 1e-05
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
RR+ + +L + E I G E+ G
Sbjct: 23 PSPGKRRMDTDVIKLIESKHEVTILG-----GLNEFVVKFYG 59
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 39.2 bits (92), Expect = 2e-05
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
L + T G + +++ + G
Sbjct: 2 TSLTRKQCDFTKLIMAGYDLELN-NGSTQDFDVMFHG 37
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 38.2 bits (89), Expect = 7e-05
Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
+A RL + L + P + + ++ ++
Sbjct: 29 AARIRLKRDLDSLDLPPTVTLNVIT-SPDSADRSQSPKLE 67
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 37.7 bits (88), Expect = 1e-04
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNL 56
+A R+ + +L + I + ++ ++ +I ++ Y+ F +
Sbjct: 26 AAQLRIQKDINELNLPKTCDI--SFSDPDDLLNFKLVICPDEGFYKSGKFVFSF 77
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 35.8 bits (83), Expect = 4e-04
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 5/42 (11%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
+ RR +Y +L P + E+ G
Sbjct: 10 NLRSNRRREMDYMRL---CNSTRKVYP--SDTVAEFWVEFKG 46
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component;
rieske center, oxygen binding/activation, substrate
bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2
d.129.3.3 PDB: 1z02_A 1z03_A*
Length = 446
Score = 26.3 bits (57), Expect = 1.7
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK 45
++ R+L + + + I P +AG V ++ ++ G +
Sbjct: 392 ISPITWRKLASRWNR-GIAKPGRGVAGAV-KDTSLIFKQTADGKR 434
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 25.2 bits (54), Expect = 3.9
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 29 VNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGW--YIPCLKSPSQTKLLYS 83
+N + E ++L W+ L L S+ +S W Y L + + + +S
Sbjct: 57 INPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWS 113
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 24.4 bits (53), Expect = 4.2
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEA 39
+ YKQ T+ G ++ +W+A
Sbjct: 27 FIYGHYKQATVGDINTERPGMLDFTGKAKWDA 58
>3bdw_B NKG2-A/NKG2-B type II integral membrane protein; NK cells,
receptor, glycoprotein, lectin, signal-A transmembrane,
immune system receptor; 2.50A {Homo sapiens} PDB:
3cdg_K 3cii_H
Length = 120
Score = 24.3 bits (53), Expect = 4.7
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
EW+ ++ + CY+ K W
Sbjct: 10 EWITYSNS-CYYIGKERRTW 28
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 24.3 bits (53), Expect = 4.9
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
WM + + CY+FS W
Sbjct: 4 RWMKYGNH-CYYFSVEEKDW 22
>3bdw_A Natural killer cells antigen CD94; NK cells, receptor,
glycoprotein, lectin, signal-A transmembrane, immune
system receptor; 2.50A {Homo sapiens} SCOP: d.169.1.1
PDB: 3cdg_J 1b6e_A 3cii_G
Length = 123
Score = 24.3 bits (53), Expect = 5.6
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
+W+ + N CYF S W
Sbjct: 8 KWVGYRCN-CYFISSEQKTW 26
>3cq0_A Putative transaldolase YGR043C; alpha/beta barrel, pentose shunt,
transferase; HET: PG4; 1.90A {Saccharomyces cerevisiae}
Length = 339
Score = 24.5 bits (53), Expect = 5.6
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 6/55 (10%)
Query: 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFS 61
++ YK + +I WE + +L N+ FS
Sbjct: 125 LHIIKLYKDAGVPKERVLIKIAST------WEGIQAARELEVKHGIHCNMTLLFS 173
>3hup_A Early activation antigen CD69; C-type lectin-like domain,
disulfide bond, glycoprotein, LEC membrane,
phosphoprotein, signal-anchor, transmembrane; 1.37A
{Homo sapiens} PDB: 1e87_A 1e8i_A 3cck_A
Length = 130
Score = 24.3 bits (53), Expect = 5.8
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
+W+ + CYF S W
Sbjct: 19 DWVGYQRK-CYFISTVKRSW 37
>2bpd_A Dectin-1; receptor, beta-glucan, fungal recognition, C-type
lectin-like domain, CTLD, carbohydrate; 1.5A {Mus
musculus} PDB: 2bph_A 2bpe_A 2cl8_A*
Length = 142
Score = 24.4 bits (53), Expect = 6.0
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W+ + CY FS + W
Sbjct: 20 NWIMHGKS-CYLFSFSGNSW 38
>1mpu_A NKG2-D type II integral membrane protein; C-type lectin-like
domain, immune system; 2.50A {Homo sapiens} SCOP:
d.169.1.1 PDB: 1hyr_B
Length = 138
Score = 24.4 bits (53), Expect = 6.3
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W+ + N CY F + W
Sbjct: 24 NWICYKNN-CYQFFDESKNW 42
>2c6u_A CLEC1B protein; lectin, rhodocytin, aggretin, C-type lectin-like,
platelets, thrombosis; 1.6A {Homo sapiens}
Length = 122
Score = 23.9 bits (52), Expect = 6.7
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W + + CY F + N W
Sbjct: 6 NWRYYGDS-CYGFFRHNLTW 24
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural
killer cell receptor, lectin, C-type lectin, immune
system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Length = 199
Score = 24.2 bits (52), Expect = 6.8
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
+W+ + CYF S W
Sbjct: 88 DWVGYQRK-CYFISTVKRSW 106
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 23.9 bits (52), Expect = 6.8
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W + + CY+F W
Sbjct: 10 YWFCYGIK-CYYFVMDRKTW 28
>1ypq_A Oxidised low density lipoprotein (lectin-like) receptor 1;
oxidized low density lipoprotein receptor, LOX-1, CTLD,
C- type lectin like domain; 1.40A {Homo sapiens} SCOP:
d.169.1.1 PDB: 1ypu_A 1yxk_A 3vlg_A 1ypo_A 1yxj_A
Length = 135
Score = 23.9 bits (52), Expect = 7.5
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
+W+ N CY FS G+ W
Sbjct: 12 DWIWHGEN-CYLFSSGSFNW 30
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A
{Homo sapiens}
Length = 118
Score = 23.9 bits (52), Expect = 8.5
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
+W + C+F S S W
Sbjct: 5 DWEFYQAR-CFFLSTSESSW 23
>1hq8_A NKG2-D; homodimer, CIS-proline, apoptosis; 1.95A {Mus musculus}
SCOP: d.169.1.1 PDB: 1jsk_A 1kcg_A*
Length = 123
Score = 23.9 bits (52), Expect = 8.6
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W+ N CY F W
Sbjct: 9 NWICHRNN-CYQFFNEEKTW 27
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 24.1 bits (52), Expect = 8.7
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W + + CY+F W
Sbjct: 70 YWFCYGIK-CYYFVMDRKTW 88
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 24.1 bits (52), Expect = 8.9
Identities = 5/20 (25%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W ++ CY+F + W
Sbjct: 83 YWFCYSTK-CYYFIMNKTTW 101
>3ff9_A Killer cell lectin-like receptor subfamily G member 1; natural
killer cell receptor KLTG1, glycoprotein, membrane,
phosphoprotein, signal-anchor; 1.80A {Mus musculus}
PDB: 3ff8_C
Length = 115
Score = 23.5 bits (51), Expect = 9.0
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 48 EWMPFALNLCYFFSKGNSGW 67
W + CY+FS W
Sbjct: 5 LWTRNGSH-CYYFSMEKKDW 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.448
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,398,285
Number of extensions: 69150
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 74
Length of query: 90
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 33
Effective length of database: 5,110,296
Effective search space: 168639768
Effective search space used: 168639768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)