RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10015
(90 letters)
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 U [TaxId: 9606]}
Length = 148
Score = 56.7 bits (136), Expect = 2e-12
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
M G A L ++ L N +GI A PV E+ EWE I G + W L F
Sbjct: 1 MHGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHF 59
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}
Length = 149
Score = 52.9 bits (126), Expect = 5e-11
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKG 63
S +R+M E + + +P I V+E + + G +
Sbjct: 1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGG--KFVVDIEVP 58
Query: 64 NSGWYIP 70
+ P
Sbjct: 59 MEYPFKP 65
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), ubc9 [TaxId: 9606]}
Length = 156
Score = 51.3 bits (122), Expect = 2e-10
Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 3 GSALRRLMAEYKQLTINPPEGIIAGPVNEE----NFFEWEALITGNKLYEWMPFALNLCY 58
G AL RL E K + P G +A P N WE I G K W L
Sbjct: 1 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 60
Query: 59 FF 60
F
Sbjct: 61 LF 62
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 G1 [TaxId: 9606]}
Length = 125
Score = 50.8 bits (121), Expect = 2e-10
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLCY 58
L + +L NP EG AG +++ + + WE LI G + LYE F +L +
Sbjct: 3 LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTF 55
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam
(Spisula solidissima), E-2C [TaxId: 6584]}
Length = 156
Score = 50.9 bits (121), Expect = 4e-10
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
S +RL E + L ++ GI A P + +N F+W A + G K + L F
Sbjct: 9 SVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEF 64
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Length = 150
Score = 50.5 bits (120), Expect = 6e-10
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYEWMPFALNLCY 58
A R++ E + L PP + ++ N W AL+ ++ Y F L + +
Sbjct: 1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISF 55
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch7 [TaxId: 9606]}
Length = 144
Score = 48.6 bits (115), Expect = 2e-09
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG-NKLYEWMPFALNLCY 58
RRLM E +++ + V+E N W+ LI N Y+ F + + +
Sbjct: 2 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINF 54
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode
(Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}
Length = 161
Score = 48.2 bits (114), Expect = 4e-09
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
+ L + + P +G AG V++ + ++WE L+ G + F
Sbjct: 1 SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDF 56
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC
{Human(Homo sapiens), E2 S [TaxId: 9606]}
Length = 151
Score = 47.4 bits (112), Expect = 7e-09
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
+ +R + E LT +PP+GI P NEE+ + + I G + + +
Sbjct: 3 LPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLL 61
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}
Length = 164
Score = 47.1 bits (111), Expect = 1e-08
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
+ +A +RL+ E +QL + P GI+AGP +E N F W+ LI G + N F
Sbjct: 1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEF 59
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 45.8 bits (108), Expect = 2e-08
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGIIAGPVN-EENFFEWEALITGNKLYEWMPFALNLCYF 59
MA S +RL E L +PP G+ + + + +W + G + L +
Sbjct: 1 MA-SMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFK 59
Query: 60 F 60
F
Sbjct: 60 F 60
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId:
4932]}
Length = 153
Score = 44.7 bits (105), Expect = 8e-08
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG 43
A RRLM ++K++ + P G+ A P+ +N W A+I G
Sbjct: 4 ARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIG 41
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 44.4 bits (104), Expect = 1e-07
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFS 61
+A +RL +Y ++ +P I A P+ N EW ++ G ++ + + F
Sbjct: 1 TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFP 57
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch10 [TaxId: 9606]}
Length = 146
Score = 43.6 bits (102), Expect = 2e-07
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
+RL E L ++ +GI A P +N F+W I G + L F
Sbjct: 2 VGKRLQQELMTLMMSGDKGISAFP-ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEF 56
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubc13 [TaxId: 9606]}
Length = 149
Score = 42.8 bits (100), Expect = 4e-07
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
RR++ E ++L P GI A P +E N + +I G + + L F
Sbjct: 2 GLPRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFL 57
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25
kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 154
Score = 42.5 bits (99), Expect = 5e-07
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 1 MAGSALRRLMAEYKQLTINPPEGI--IAGPVNEENFFEWEALITGNKLYEWMPFALNLCY 58
MA A++R+ E+K++ + I + +ENF E I G + L
Sbjct: 1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 60
Query: 59 FFS 61
Sbjct: 61 KIP 63
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}
Length = 152
Score = 42.4 bits (99), Expect = 5e-07
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEW 49
A S +R++ E ++L +P GI A P +++N ++ I G + +
Sbjct: 1 AASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPY 47
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC
{Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId:
6239]}
Length = 149
Score = 41.3 bits (96), Expect = 1e-06
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALI 41
+ RRLM ++K+L +PP G+ P E+N WEA+I
Sbjct: 4 SRRRLMRDFKKLQEDPPAGVSGAP-TEDNILTWEAII 39
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 41.4 bits (96), Expect = 1e-06
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 4 SALRRLMAEYKQLTINPPE--GIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFS 61
A RLM E + + + GI + + ++ ++W + P +L
Sbjct: 4 QASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVD--PDSPLHSDLQILKE 61
Query: 62 KGNSGWYIPCLKSPSQTK 79
K + +
Sbjct: 62 KEGIEYILLNFSFKDNFP 79
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme,
E2 domain {Plasmodium chabaudi [TaxId: 5825]}
Length = 109
Score = 40.5 bits (94), Expect = 2e-06
Identities = 10/54 (18%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFS 61
R+ E NPP + N W G + + L F
Sbjct: 2 RIQKELHNFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKIIFP 54
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 40.8 bits (95), Expect = 2e-06
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 2 AGSALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK-LYE--WMPFALNLCY 58
A +A R+ + +L N P+ + ++ ++ +I ++ Y+ F+ +
Sbjct: 1 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQ 58
Query: 59 FF 60
+
Sbjct: 59 GY 60
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), ubch8 [TaxId: 9606]}
Length = 148
Score = 40.5 bits (94), Expect = 3e-06
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFF 60
++ +R+ E ++T++PP AGP +N +EW + I G + L F
Sbjct: 2 TSAKRIQKELAEITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVFFLDITF 57
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC
{Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Length = 147
Score = 40.5 bits (94), Expect = 3e-06
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 5 ALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNK--LYEWMPFALNLCY 58
AL+R+ E + L +PP AGPV ++ F W+A I G Y+ F L + +
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIHF 56
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 39.1 bits (90), Expect = 1e-05
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLCY 58
RL E L PP GI +++ + A I G N YE F L +
Sbjct: 2 QRASRLKRELHMLATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLEVII 57
>d2z5da1 d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 H [TaxId: 9606]}
Length = 152
Score = 34.7 bits (79), Expect = 5e-04
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 7/55 (12%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNL 56
RR+ + +L + E I E+ G YE + + +
Sbjct: 3 PGKRRMDTDVVKLIESKHEVTI-----LGGLNEFVVKFYGPQGTPYEGGVWKVRV 52
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 34.2 bits (78), Expect = 6e-04
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 7 RRLMAEYKQLTINPPEGIIAGPV---NEENFFEWEALITG 43
RL+ E ++ +G ++ + + W +I G
Sbjct: 8 FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIG 47
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721,
E2 domain {Toxoplasma gondii [TaxId: 5811]}
Length = 161
Score = 32.5 bits (73), Expect = 0.003
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLCY 58
L+R T + G+ A V + W I G YE F L++
Sbjct: 16 LQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVI 69
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's
yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}
Length = 136
Score = 31.9 bits (72), Expect = 0.004
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 7 RRLMAEYKQL-TINPPEGIIAGPVNEE--NFFEWEALITGNKLYEWMPFALNLCYFFS 61
RL+ E ++ PE G + + +W I G +L
Sbjct: 7 FRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 64
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC
{Leishmania major [TaxId: 5664]}
Length = 158
Score = 27.8 bits (61), Expect = 0.11
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 7 RRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITG--NKLYEWMPFALNLC----YFF 60
RR +Y +L + + + E+ G YE + L++ Y F
Sbjct: 3 RRREMDYMRLCNSTRKVYP-----SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 57
Query: 61 SKGNSGWYIPC 71
+ G+
Sbjct: 58 KSPSIGFCNRI 68
>d1laue_ c.18.1.1 (E:) Uracil-DNA glycosylase {Herpes simplex
virus type 1 [TaxId: 10298]}
Length = 228
Score = 25.0 bits (54), Expect = 1.3
Identities = 9/58 (15%), Positives = 14/58 (24%)
Query: 6 LRRLMAEYKQLTINPPEGIIAGPVNEENFFEWEALITGNKLYEWMPFALNLCYFFSKG 63
L + + PP + E +I G Y A L +
Sbjct: 33 LAEYNRRCQTEEVLPPREDVFSWTRYCTPDEVRVVIIGQDPYHHPGQAHGLAFSVRAN 90
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 86
Score = 23.3 bits (50), Expect = 3.1
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 8 RLMAEYKQLTINPPEGIIAGPVNEENFFEWEA 39
+ + YKQ T+ G ++ + +W+A
Sbjct: 26 FIYSHYKQATVGDINTERPGMLDFKGKAKWDA 57
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 23.3 bits (50), Expect = 5.5
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 3/27 (11%)
Query: 4 SALRRLMAEYKQLTINPPEGIIAGPVN 30
+ RL Y + +N P V
Sbjct: 357 THRHRLGPNYLHIPVNCP---YRARVA 380
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus [TaxId:
1270]}
Length = 498
Score = 23.4 bits (50), Expect = 6.1
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 2 AGSALRRLMAEYKQLTINPP 21
+ L R+ A QL +N P
Sbjct: 339 HDAQLYRVGAHVNQLPVNRP 358
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 22.9 bits (49), Expect = 7.8
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 4 SALRRLMAEYKQLTINPP 21
+ RL + Q+ +N P
Sbjct: 337 AHRYRLGVNHHQIPVNAP 354
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 22.6 bits (47), Expect = 8.7
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 18 INPPEGIIAGP----VNEENFFEWEALITGNKLYEWMPFALNLCYFFSKGNSGW--YIPC 71
I+ + I+ P +N + E ++L W+ L L S+ +S W Y
Sbjct: 41 ISRNDVILQVPKRLWINPDAVAASEIGRVCSELKPWLSVILFLIRERSREDSVWKHYFGI 100
Query: 72 LKSPSQTKLLYS 83
L + + + +S
Sbjct: 101 LPQETDSTIYWS 112
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493
{Bacillus halodurans [TaxId: 86665]}
Length = 415
Score = 22.6 bits (48), Expect = 8.9
Identities = 6/31 (19%), Positives = 7/31 (22%)
Query: 20 PPEGIIAGPVNEENFFEWEALITGNKLYEWM 50
E A E+ WE L
Sbjct: 61 SIEAFWAMSKREQADLIWEELFIKRSPVSEA 91
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.448
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,961
Number of extensions: 14596
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 40
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)