BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10016
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IO5|A Chain A, Crystal Structure Of The Cia- Histone H3-H4 Complex
Length = 175
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 112/136 (82%)
Query: 14 KRMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLD 73
MAKVQ+ NV VLDN SPF F+FE+ FECIE+L EDLEWK+IYVGSAESEEYDQVLD
Sbjct: 2 SHMAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLD 61
Query: 74 TIYVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYA 133
++ VGP+P G+HMFVF+AD P+ IP+ D +GVTVVL+TC+YRG EF+RVG++VNNEY
Sbjct: 62 SVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYT 121
Query: 134 DPELKENPPEKPQFDK 149
+ EL+ENPP KP F K
Sbjct: 122 ETELRENPPVKPDFSK 137
>pdb|3AAD|B Chain B, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
pdb|3AAD|D Chain D, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 158
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 92/136 (67%), Positives = 112/136 (82%)
Query: 14 KRMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLD 73
MAKVQ+ NV VLDN SPF F+FE+ FECIE+L EDLEWK+IYVGSAESEEYDQVLD
Sbjct: 2 SHMAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLD 61
Query: 74 TIYVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYA 133
++ VGP+P G+HMFVF+AD P+ IP+ D +GVTVVL+TC+YRG EF+RVG++VNNEY
Sbjct: 62 SVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYT 121
Query: 134 DPELKENPPEKPQFDK 149
+ EL+ENPP KP F K
Sbjct: 122 ETELRENPPVKPDFSK 137
>pdb|2I32|A Chain A, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
pdb|2I32|B Chain B, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
Length = 182
Score = 203 bits (517), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/134 (68%), Positives = 112/134 (83%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
MAKVQ+ NV VLDN SPF F+FE+ FECIE+L EDLEWK+IYVGSAESEEYDQVLD++
Sbjct: 26 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 85
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADP 135
VGP+P G+HMFVF+AD P+ IP+ D +GVTVVL+TC+YRG EF+RVG++VNNEY +
Sbjct: 86 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 145
Query: 136 ELKENPPEKPQFDK 149
EL+ENPP KP F K
Sbjct: 146 ELRENPPVKPDFSK 159
>pdb|1TEY|A Chain A, Nmr Structure Of Human Histone Chaperone, Asf1a
pdb|2IIJ|A Chain A, Structure Of Human Asf1a In Complex With Histone H3
Length = 158
Score = 203 bits (516), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 92/134 (68%), Positives = 112/134 (83%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
MAKVQ+ NV VLDN SPF F+FE+ FECIE+L EDLEWK+IYVGSAESEEYDQVLD++
Sbjct: 3 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 62
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADP 135
VGP+P G+HMFVF+AD P+ IP+ D +GVTVVL+TC+YRG EF+RVG++VNNEY +
Sbjct: 63 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 122
Query: 136 ELKENPPEKPQFDK 149
EL+ENPP KP F K
Sbjct: 123 ELRENPPVKPDFSK 136
>pdb|2YGV|A Chain A, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|B Chain B, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|C Chain C, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
pdb|2YGV|D Chain D, Conserved N-Terminal Domain Of The Yeast Histone Chaperone
Asf1 In Complex With The C-Terminal Fragment Of Rad53
Length = 158
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 97/134 (72%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
M+ V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I
Sbjct: 3 MSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSI 62
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADP 135
VGP+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY +
Sbjct: 63 LVGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEE 122
Query: 136 ELKENPPEKPQFDK 149
EL+ENPP K Q D
Sbjct: 123 ELRENPPAKVQVDH 136
>pdb|1WG3|A Chain A, Structural Analysis Of Yeast Nucleosome-Assembly Factor
Cia1p
Length = 175
Score = 159 bits (401), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 97/134 (72%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
M+ V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I
Sbjct: 7 MSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSI 66
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADP 135
VGP+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY +
Sbjct: 67 LVGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEE 126
Query: 136 ELKENPPEKPQFDK 149
EL+ENPP K Q D
Sbjct: 127 ELRENPPAKVQVDH 140
>pdb|2IDC|A Chain A, Structure Of The Histone H3-Asf1 Chaperone Interaction
Length = 179
Score = 158 bits (400), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 95/130 (73%)
Query: 19 VQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVG 78
V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I VG
Sbjct: 6 VSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVG 65
Query: 79 PIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELK 138
P+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY + EL+
Sbjct: 66 PVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELR 125
Query: 139 ENPPEKPQFD 148
ENPP K Q D
Sbjct: 126 ENPPAKVQVD 135
>pdb|1ROC|A Chain A, Crystal Structure Of The Histone Deposition Protein Asf1
Length = 155
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 95/131 (72%)
Query: 19 VQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVG 78
V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I VG
Sbjct: 5 VSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVG 64
Query: 79 PIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELK 138
P+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY + EL+
Sbjct: 65 PVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELR 124
Query: 139 ENPPEKPQFDK 149
ENPP K Q D
Sbjct: 125 ENPPAKVQVDH 135
>pdb|4EO5|A Chain A, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 169
Score = 157 bits (396), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 95/131 (72%)
Query: 19 VQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVG 78
V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I VG
Sbjct: 4 VSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVG 63
Query: 79 PIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELK 138
P+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY + EL+
Sbjct: 64 PVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELR 123
Query: 139 ENPPEKPQFDK 149
ENPP K Q D
Sbjct: 124 ENPPAKVQVDH 134
>pdb|2HUE|A Chain A, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 175
Score = 156 bits (395), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 95/131 (72%)
Query: 19 VQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVG 78
V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I VG
Sbjct: 10 VSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVG 69
Query: 79 PIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELK 138
P+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY + EL+
Sbjct: 70 PVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELR 129
Query: 139 ENPPEKPQFDK 149
ENPP K Q D
Sbjct: 130 ENPPAKVQVDH 140
>pdb|2CU9|A Chain A, Crystal Structure Of Histone Chaperone Cia1
pdb|2DZE|A Chain A, Crystal Structure Of Histone Chaperone Asf1 In Complex
With A C-Terminus Of Histone H3
pdb|2DZE|B Chain B, Crystal Structure Of Histone Chaperone Asf1 In Complex
With A C-Terminus Of Histone H3
pdb|2Z34|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
pdb|2Z34|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEX WITH HIP1
pdb|2Z3F|A Chain A, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|B Chain B, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|C Chain C, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|D Chain D, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|E Chain E, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|F Chain F, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|G Chain G, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
pdb|2Z3F|H Chain H, Crystal Structure Of Spcia1ASF1 COMPLEXED WITH CAC2
PEPTIDE
Length = 161
Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/125 (57%), Positives = 97/125 (77%), Gaps = 1/125 (0%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
M+ V + +V VL+N + FS ++FE+ FEC+E LK DLEWK+ YVGSA S+ YDQ+LDT+
Sbjct: 1 MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTL 60
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPE-KDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYAD 134
VGPIP G + FVFEADPP+++ +P+ DVLGVTV+LL+C+Y NEFVRVG++VNNE
Sbjct: 61 LVGPIPIGINKFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEG 120
Query: 135 PELKE 139
L+E
Sbjct: 121 LNLQE 125
>pdb|2ZNI|A Chain A, Crystal Structure Of Pyrrolysyl-Trna
Synthetase-Trna(Pyl) Complex From Desulfitobacterium
Hafniense
pdb|2ZNI|B Chain B, Crystal Structure Of Pyrrolysyl-Trna
Synthetase-Trna(Pyl) Complex From Desulfitobacterium
Hafniense
pdb|2ZNJ|A Chain A, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|B Chain B, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
pdb|2ZNJ|C Chain C, Crystal Structure Of Pyrrolysyl-Trna Synthetase From
Desulfitobacterium Hafniense
Length = 308
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 78 GPIPEGKHMFVFEADPP 94
G +P G HMF+ DPP
Sbjct: 13 GLVPRGSHMFLTRRDPP 29
>pdb|1W2T|A Chain A, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|B Chain B, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|C Chain C, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|D Chain D, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|E Chain E, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|F Chain F, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
Length = 432
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 50 KEDLEWKMIYVGSAESEEYDQVL--------DTIYVGPIPEGKHMFVFEADPPDVNKIPE 101
+ + EW+M+ +GS + E+ +VL Y G I E + E D PD+ +I E
Sbjct: 143 RSNGEWRMV-LGSGKDEKIGRVLLYTSDDLFHWKYEGAIFEDET--TKEIDCPDLVRIGE 199
Query: 102 KDVL 105
KD+L
Sbjct: 200 KDIL 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,831,316
Number of Sequences: 62578
Number of extensions: 200036
Number of successful extensions: 423
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 14
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)