Query psy10016
Match_columns 149
No_of_seqs 108 out of 171
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 15:43:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3265|consensus 100.0 1.5E-71 3.3E-76 462.5 12.7 134 16-149 1-134 (250)
2 PF04729 ASF1_hist_chap: ASF1 100.0 4E-71 8.7E-76 435.8 12.6 134 16-149 1-134 (154)
3 COG5137 Histone chaperone invo 100.0 5.9E-57 1.3E-61 376.1 11.1 133 16-148 1-138 (279)
4 PF14524 Wzt_C: Wzt C-terminal 86.4 1.2 2.5E-05 31.8 3.8 72 17-94 11-95 (142)
5 PF02221 E1_DerP2_DerF2: ML do 81.4 11 0.00023 27.2 7.1 81 18-100 14-107 (134)
6 cd00917 PG-PI_TP The phosphati 56.9 77 0.0017 23.4 10.1 82 18-102 11-99 (122)
7 PF04809 HupH_C: HupH hydrogen 48.3 27 0.00059 26.5 3.6 25 54-82 72-96 (120)
8 smart00737 ML Domain involved 46.8 88 0.0019 22.3 6.0 38 19-57 9-46 (118)
9 PF03672 UPF0154: Uncharacteri 42.0 1.4 3.1E-05 30.8 -3.8 21 124-144 13-33 (64)
10 PRK00523 hypothetical protein; 40.4 1.6 3.5E-05 31.2 -3.8 22 124-145 21-42 (72)
11 PRK01844 hypothetical protein; 40.1 1.6 3.6E-05 31.2 -3.9 22 124-145 20-41 (72)
12 COG3763 Uncharacterized protei 34.8 3.1 6.7E-05 29.8 -3.2 22 124-145 20-41 (71)
13 PF07495 Y_Y_Y: Y_Y_Y domain; 31.9 84 0.0018 19.8 3.5 27 74-100 30-56 (66)
14 PF11033 ComJ: Competence prot 30.5 83 0.0018 24.6 3.8 26 73-98 87-112 (125)
15 PF12194 Ste5_C: Protein kinas 29.2 21 0.00046 29.8 0.4 18 121-139 144-163 (191)
16 PF00845 Gemini_BL1: Geminivir 24.0 1.3E+02 0.0029 26.5 4.3 46 18-63 61-113 (276)
17 PF14289 DUF4369: Domain of un 23.3 2.4E+02 0.0052 19.0 4.8 53 38-99 12-64 (106)
18 TIGR01631 Trypano_RHS trypanos 21.5 56 0.0012 32.4 1.7 22 46-67 703-724 (760)
19 cd02851 Galactose_oxidase_C_te 21.4 3.4E+02 0.0074 20.0 6.7 56 38-101 22-78 (101)
20 PTZ00209 retrotransposon hot s 20.6 53 0.0011 32.3 1.3 25 43-67 602-626 (693)
21 cd08692 C2B_Tac2-N C2 domain s 20.4 2.1E+02 0.0045 22.1 4.4 43 33-81 67-109 (135)
22 PHA02766 hypothetical protein; 20.2 1.4E+02 0.0031 21.1 3.1 23 36-58 12-50 (73)
23 PF01410 COLFI: Fibrillar coll 20.0 2.7E+02 0.0058 22.8 5.2 62 40-103 116-192 (214)
No 1
>KOG3265|consensus
Probab=100.00 E-value=1.5e-71 Score=462.48 Aligned_cols=134 Identities=69% Similarity=1.235 Sum_probs=133.1
Q ss_pred eeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCCCC
Q psy10016 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADPPD 95 (149)
Q Consensus 16 Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pPd 95 (149)
||+|||+||+||+|||+|.+||+|+|||||++.|++|||||+||||||+|++|||+|||++|||||+|+|||+|+|||||
T Consensus 1 Ms~v~i~~V~Vl~Npa~F~dPfkFEItFEC~E~Lk~DLEWkliYVGSa~See~DQvLdsilVGPVP~G~~~FVf~AD~Pd 80 (250)
T KOG3265|consen 1 MSKVNILNVEVLDNPAKFVDPFKFEITFECLEELKHDLEWKLIYVGSAESEEYDQVLDSILVGPVPVGRHKFVFQADAPD 80 (250)
T ss_pred CceeeeeeEEEccCccccCCceeEEEEEEEhhhcCCCceEEEEEeeccccchhhhhhhheeeccccccceEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCCCCCCCC
Q psy10016 96 VNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPEKPQFDK 149 (149)
Q Consensus 96 ~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~~p~~dk 149 (149)
++|||.+|++|||+|||||||++||||||||||||+|++++||||||++|++||
T Consensus 81 ~~kIP~~d~vGVTviLltC~Y~gQEFIRvGYyVnNeY~~~elrEnpP~k~~idK 134 (250)
T KOG3265|consen 81 PSKIPEDDIVGVTVILLTCSYRGQEFIRVGYYVNNEYTEEELRENPPSKPLIDK 134 (250)
T ss_pred cccCcccceeeeEEEEEEEEEcCceeEEEEEEecCCCCchhhccCCCCchhHHH
Confidence 999999999999999999999999999999999999999999999999999986
No 2
>PF04729 ASF1_hist_chap: ASF1 like histone chaperone; InterPro: IPR006818 This family includes the yeast and human ASF1 protein. These proteins have histone chaperone activity []. ASF1 participates in both the replication-dependent and replication-independent pathways. The structure three-dimensional has been determined as a compact immunoglobulin-like beta sandwich fold topped by three helical linkers [].; GO: 0006333 chromatin assembly or disassembly, 0005634 nucleus; PDB: 2YGV_C 1WG3_A 2HUE_A 2IDC_A 4EO5_A 1ROC_A 1TEY_A 2IO5_A 3AAD_D 2IIJ_A ....
Probab=100.00 E-value=4e-71 Score=435.80 Aligned_cols=134 Identities=70% Similarity=1.273 Sum_probs=120.2
Q ss_pred eeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCCCC
Q psy10016 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADPPD 95 (149)
Q Consensus 16 Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pPd 95 (149)
||+|+|+||+|+||||+|++||+|||+|||+++|++|+|||++|||||+|++|||+||+++|||+++|+|||+|+|+|||
T Consensus 1 Ms~V~l~~V~vl~np~~f~~p~~feI~fE~~e~L~~dleWkiiYVgSa~~~~~DQ~Ld~v~vGPi~~G~~kF~~~adpPd 80 (154)
T PF04729_consen 1 MSRVNLTNVEVLNNPAPFTDPFQFEITFECLEPLEDDLEWKIIYVGSAESEEYDQELDSVLVGPIPVGVNKFVFEADPPD 80 (154)
T ss_dssp --SEEEEEEEESSTSEETTS-EEEEEEEEESSE-SS-EEEEEEEESSSSSGGGEEEEEEEEECS-ESEEEEEEEEE----
T ss_pred CCeEEEEEEEEeCCccccCCCEEEEEEEEECccccCCcEEEEEEEecccccCCcEEEeeEEECCCcceeEEEEEEccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCCCCCCCC
Q psy10016 96 VNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPEKPQFDK 149 (149)
Q Consensus 96 ~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~~p~~dk 149 (149)
+++||.+|++|||||||||||++|||+||||||||+|.|+||+||||.+|++||
T Consensus 81 ~~~Ip~~dllGvTvillt~sY~~~EFiRVGYYVnney~d~el~e~pp~~~~~~~ 134 (154)
T PF04729_consen 81 PSKIPPEDLLGVTVILLTCSYRGQEFIRVGYYVNNEYPDPELRENPPEKPDIDK 134 (154)
T ss_dssp GGGSSCCHHSEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHS-HSS--GGG
T ss_pred hhhCChhhccccEEEEEEEEECCeEEEEEeeEEEeeeCCHHHhhCcCCCcCHHH
Confidence 999999999999999999999999999999999999999999999999999886
No 3
>COG5137 Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-57 Score=376.10 Aligned_cols=133 Identities=57% Similarity=1.047 Sum_probs=130.0
Q ss_pred eeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCCCC
Q psy10016 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADPPD 95 (149)
Q Consensus 16 Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pPd 95 (149)
||.|++.+|+|+|||++|.+||+|+|||||+++|+.|||||++||||+.|.++||+||+++|||||+|++||+|.||||+
T Consensus 1 Msiv~llsi~VlnnpaKf~DPykFeitFeClE~lK~dlEwkltYvgs~~S~~~DQvLd~ilVgPiP~G~nkFvf~ADpP~ 80 (279)
T COG5137 1 MSIVKLLSIEVLNNPAKFGDPYKFEITFECLEELKCDLEWKLTYVGSVHSDENDQVLDEILVGPIPKGKNKFVFDADPPD 80 (279)
T ss_pred CceeeeEEEEeecChhhcCCCeeeEEEEEEhhhhcCCceEEEEEeeccccccchhhhhheeeccccccceeEEeecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccC-----CcccccCCCCCCCCC
Q psy10016 96 VNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYA-----DPELKENPPEKPQFD 148 (149)
Q Consensus 96 ~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~-----d~eL~enpP~~p~~d 148 (149)
..+||.++++|||+|||+|+|++|||+||||||||+|. ..+++|+||.+.+.+
T Consensus 81 v~liPlse~~gvTvILlsc~Y~g~eFvRvGYyVnney~gi~~~e~~d~E~p~~kvd~~ 138 (279)
T COG5137 81 VNLIPLSEMFGVTVILLSCRYKGQEFVRVGYYVNNEYPGITKLEKSDVEEPSEKVDEE 138 (279)
T ss_pred ccccchhhhhceeEEEEEEeecCceeEEEEEEeccCCcchhhhhhhhhcCCchhcCHH
Confidence 99999999999999999999999999999999999999 788899999987654
No 4
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=86.37 E-value=1.2 Score=31.84 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=42.0
Q ss_pred eeeEEeeEEEccC------CCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeee-------eeEEecccccc
Q psy10016 17 AKVQLTNVTVLDN------SSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVL-------DTIYVGPIPEG 83 (149)
Q Consensus 17 s~V~v~~V~v~~n------p~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~L-------ds~~VGPi~~G 83 (149)
..+.|++|.++|. .-...+++.|+|+|+|.+++++ +..-+.--.+ ..|.+ ....+...+.|
T Consensus 11 ~~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~-~~~~~~i~~~-----~g~~v~~~~t~~~~~~~~~~~~g 84 (142)
T PF14524_consen 11 GEARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDD-PVFGFAIRDS-----DGQRVFGTNTYDSGFPIPLSEGG 84 (142)
T ss_dssp SSEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEE-EEEEEEEEET-----T--EEEEEEHHHHT--EEE-TT-
T ss_pred CCEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCc-cEEEEEEEcC-----CCCEEEEECccccCccccccCCC
Confidence 5688999999883 2457899999999999998887 3333322211 11111 11223333388
Q ss_pred eEEEEEEeCCC
Q psy10016 84 KHMFVFEADPP 94 (149)
Q Consensus 84 ~~kF~~ea~pP 94 (149)
++++.++.+.+
T Consensus 85 ~~~~~~~i~~~ 95 (142)
T PF14524_consen 85 TYEVTFTIPKP 95 (142)
T ss_dssp EEEEEEEEE--
T ss_pred EEEEEEEEcCc
Confidence 88888888776
No 5
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=81.43 E-value=11 Score=27.23 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=51.0
Q ss_pred eeEEeeEEEccC-CCcCCCceeEEEEEEEcccccCCeEEEEEEEecC-CC--C-CCCeeeeeEE----ec---ccccceE
Q psy10016 18 KVQLTNVTVLDN-SSPFSQQFRFELVFECIEELKEDLEWKMIYVGSA-ES--E-EYDQVLDTIY----VG---PIPEGKH 85 (149)
Q Consensus 18 ~V~v~~V~v~~n-p~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa-~s--~-~~DQ~Lds~~----VG---Pi~~G~~ 85 (149)
..++++|.+-.+ |-....++.++++|+..+...+++..++...-.. -. . ..++..|-+. .| |++.|..
T Consensus 14 ~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~ 93 (134)
T PF02221_consen 14 PGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEY 93 (134)
T ss_dssp CECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEE
T ss_pred CceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcE
Confidence 356777777633 5667789999999988888888887766333221 00 0 1233223333 56 9999987
Q ss_pred -EEEEEeCCCCCCCCC
Q psy10016 86 -MFVFEADPPDVNKIP 100 (149)
Q Consensus 86 -kF~~ea~pPd~~kIp 100 (149)
.|.++..-| ..+|
T Consensus 94 ~~~~~~~~i~--~~~p 107 (134)
T PF02221_consen 94 YTYTYTIPIP--KIYP 107 (134)
T ss_dssp EEEEEEEEES--TTSS
T ss_pred EEEEEEEEcc--ccee
Confidence 777777644 4444
No 6
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=56.92 E-value=77 Score=23.36 Aligned_cols=82 Identities=23% Similarity=0.230 Sum_probs=53.6
Q ss_pred eeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEE--EEEe--cCCCCCCCe--eee-eEEecccccceEEEEEE
Q psy10016 18 KVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKM--IYVG--SAESEEYDQ--VLD-TIYVGPIPEGKHMFVFE 90 (149)
Q Consensus 18 ~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKi--iYVg--Sa~s~~~DQ--~Ld-s~~VGPi~~G~~kF~~e 90 (149)
.++|++|.|-.+|=.-..++.|++.|...+++++-....+ .|-| -. ...+|= .+. .=.==|++.|...+..+
T Consensus 11 ~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~-~~~~DlC~~~~~~g~~CPi~~G~~~~~~~ 89 (122)
T cd00917 11 IVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLL-SETYDLCDETKNVDLSCPIEPGDKFLTKL 89 (122)
T ss_pred eEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEee-cccCCcccccccCCCcCCcCCCcEEEEEE
Confidence 5788999999999888889999999999999988544433 2211 11 112221 111 00124999999998887
Q ss_pred eCCCCCCCCCCC
Q psy10016 91 ADPPDVNKIPEK 102 (149)
Q Consensus 91 a~pPd~~kIp~~ 102 (149)
..-| ..+|..
T Consensus 90 ~~ip--~~~P~g 99 (122)
T cd00917 90 VDLP--GEIPPG 99 (122)
T ss_pred eeCC--CCCCCc
Confidence 7766 445543
No 7
>PF04809 HupH_C: HupH hydrogenase expression protein, C-terminal conserved region; InterPro: IPR006894 This entry represents the C-terminal conserved domain found in bacterial hydrogenase expression proteins (HupH), which are necessary for hydrogenase synthesis. The precise function of HupH is unknown [].; PDB: 3SB1_A.
Probab=48.30 E-value=27 Score=26.55 Aligned_cols=25 Identities=44% Similarity=0.809 Sum_probs=18.5
Q ss_pred EEEEEEEecCCCCCCCeeeeeEEeccccc
Q psy10016 54 EWKMIYVGSAESEEYDQVLDTIYVGPIPE 82 (149)
Q Consensus 54 ewKiiYVgSa~s~~~DQ~Lds~~VGPi~~ 82 (149)
-|.+.|.++ +-.-+||+++||++|.
T Consensus 72 VWrV~~~n~----~~~~i~d~iEV~~vP~ 96 (120)
T PF04809_consen 72 VWRVRYFNS----DGRLILDTIEVGDVPE 96 (120)
T ss_dssp EEEEEEE-T----TS-EEEEEEEESSS-G
T ss_pred EEEEEEECC----CCCEeeeeEEEeCCcH
Confidence 499999876 4457999999999984
No 8
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=46.78 E-value=88 Score=22.30 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=30.3
Q ss_pred eEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEE
Q psy10016 19 VQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKM 57 (149)
Q Consensus 19 V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKi 57 (149)
.++.+|.|..+|-....++.+++.|+..+++++ +.-++
T Consensus 9 ~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~-~~~~v 46 (118)
T smart00737 9 GQISSVSISPCPPVRGKTLTISISFTLNEDISK-LKVVV 46 (118)
T ss_pred ceEEEEEecCCCCCCCCEEEEEEEEEEcccceE-EEEEE
Confidence 578888888888788899999999999888754 44444
No 9
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=42.00 E-value=1.4 Score=30.79 Aligned_cols=21 Identities=48% Similarity=1.059 Sum_probs=18.6
Q ss_pred EEeeeecccCCcccccCCCCC
Q psy10016 124 VGFFVNNEYADPELKENPPEK 144 (149)
Q Consensus 124 IGYYVnneY~d~eL~enpP~~ 144 (149)
+|||+..-|...+|+||||-.
T Consensus 13 ~Gff~ar~~~~k~l~~NPpin 33 (64)
T PF03672_consen 13 IGFFIARKYMEKQLKENPPIN 33 (64)
T ss_pred HHHHHHHHHHHHHHHHCCCCC
Confidence 589999999999999999954
No 10
>PRK00523 hypothetical protein; Provisional
Probab=40.40 E-value=1.6 Score=31.25 Aligned_cols=22 Identities=32% Similarity=0.791 Sum_probs=19.2
Q ss_pred EEeeeecccCCcccccCCCCCC
Q psy10016 124 VGFFVNNEYADPELKENPPEKP 145 (149)
Q Consensus 124 IGYYVnneY~d~eL~enpP~~p 145 (149)
+|||+.-.|...+|+||||-.+
T Consensus 21 ~Gffiark~~~k~l~~NPpine 42 (72)
T PRK00523 21 IGYFVSKKMFKKQIRENPPITE 42 (72)
T ss_pred HHHHHHHHHHHHHHHHCcCCCH
Confidence 4889999999999999999754
No 11
>PRK01844 hypothetical protein; Provisional
Probab=40.15 E-value=1.6 Score=31.23 Aligned_cols=22 Identities=36% Similarity=0.765 Sum_probs=19.2
Q ss_pred EEeeeecccCCcccccCCCCCC
Q psy10016 124 VGFFVNNEYADPELKENPPEKP 145 (149)
Q Consensus 124 IGYYVnneY~d~eL~enpP~~p 145 (149)
+|+|+.-.|...+|+||||-..
T Consensus 20 ~Gff~ark~~~k~lk~NPpine 41 (72)
T PRK01844 20 LGFFIARKYMMNYLQKNPPINE 41 (72)
T ss_pred HHHHHHHHHHHHHHHHCCCCCH
Confidence 5889999999999999999653
No 12
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.77 E-value=3.1 Score=29.83 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.1
Q ss_pred EEeeeecccCCcccccCCCCCC
Q psy10016 124 VGFFVNNEYADPELKENPPEKP 145 (149)
Q Consensus 124 IGYYVnneY~d~eL~enpP~~p 145 (149)
.|||+.--|...+|++|||-..
T Consensus 20 ~G~fiark~~~k~lk~NPpine 41 (71)
T COG3763 20 GGFFIARKQMKKQLKDNPPINE 41 (71)
T ss_pred HHHHHHHHHHHHHHhhCCCCCH
Confidence 5899999999999999999643
No 13
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=31.89 E-value=84 Score=19.84 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=19.6
Q ss_pred eEEecccccceEEEEEEeCCCCCCCCC
Q psy10016 74 TIYVGPIPEGKHMFVFEADPPDVNKIP 100 (149)
Q Consensus 74 s~~VGPi~~G~~kF~~ea~pPd~~kIp 100 (149)
++..-+++.|++.|.++|--.+-..-.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~ 56 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSS 56 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-S
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCc
Confidence 888999999999999999776655444
No 14
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=30.50 E-value=83 Score=24.62 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=19.6
Q ss_pred eeEEecccccceEEEEEEeCCCCCCC
Q psy10016 73 DTIYVGPIPEGKHMFVFEADPPDVNK 98 (149)
Q Consensus 73 ds~~VGPi~~G~~kF~~ea~pPd~~k 98 (149)
.+-+-=|+|.|.+..+|++-||+-+.
T Consensus 87 s~~~~~~ip~G~Y~Lv~~~ip~~~~~ 112 (125)
T PF11033_consen 87 SEKLSFDIPKGDYQLVFQTIPPEDEE 112 (125)
T ss_pred cCcEEEecCCCcEEEEEEEeCCCccc
Confidence 33345689999999999999965443
No 15
>PF12194 Ste5_C: Protein kinase Fus3-binding; InterPro: IPR021106 The Saccharomyces cerevisiae pheromone response pathway involves a cascade of 3 MAP kinases Ste11, Ste7, and Fus3. Ste5 is an essential element of this cascade, acting as a scaffold for each of the MAP kinases prior to signalling []. This entry represents the Fus3-binding domain of Ste5, also known as the minimal scaffold domain. It acts as a co-catalyst, binding Fus3 and promoting its phosphorylation by Ste7 []. In the absence of this domain, Fus3 is an extremely poor substrate for Ste7. The requirement for both Ste7 and this domain in Fus3 activation ensures that Fus3 is selectively activated by the mating pathway and not by other pathways that also utilise Ste7.; PDB: 3FZE_A.
Probab=29.21 E-value=21 Score=29.82 Aligned_cols=18 Identities=44% Similarity=0.850 Sum_probs=7.7
Q ss_pred eeEEEeeeecccCC--ccccc
Q psy10016 121 FVRVGFFVNNEYAD--PELKE 139 (149)
Q Consensus 121 FiRIGYYVnneY~d--~eL~e 139 (149)
=++||| .|++|.| .||-|
T Consensus 144 KIKVGy-LNvDYSD~I~ELVE 163 (191)
T PF12194_consen 144 KIKVGY-LNVDYSDKINELVE 163 (191)
T ss_dssp EEEES---SS------SS-EE
T ss_pred EEEEee-eccchhhhhHHHhh
Confidence 378998 9999998 45544
No 16
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=23.97 E-value=1.3e+02 Score=26.48 Aligned_cols=46 Identities=22% Similarity=0.468 Sum_probs=35.0
Q ss_pred eeEEeeEEEccCC---CcCCCceeEEEEEEEcc----cccCCeEEEEEEEecC
Q psy10016 18 KVQLTNVTVLDNS---SPFSQQFRFELVFECIE----ELKEDLEWKMIYVGSA 63 (149)
Q Consensus 18 ~V~v~~V~v~~np---~~f~~p~~FeI~FEcl~----~L~~dlewKiiYVgSa 63 (149)
.|.+..=.+.+|- |.|+-|+...|.+.-.. .|+|..-||+.|=-+.
T Consensus 61 IVEIhD~Rmtd~es~QA~~TfPI~CNidLHYfSSSfFSlKDp~PWkl~YrV~D 113 (276)
T PF00845_consen 61 IVEIHDKRMTDNESLQASFTFPIRCNIDLHYFSSSFFSLKDPIPWKLYYRVED 113 (276)
T ss_pred EEEEeccccccChhheeEEEeeeeeeeeeEEeeecceecCCCCCeEEEEEeec
Confidence 3455555566665 78999999998877544 6999999999997664
No 17
>PF14289 DUF4369: Domain of unknown function (DUF4369)
Probab=23.29 E-value=2.4e+02 Score=18.98 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=33.1
Q ss_pred eEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCCCCCCCC
Q psy10016 38 RFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADPPDVNKI 99 (149)
Q Consensus 38 ~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pPd~~kI 99 (149)
.|.|+-..... .+. +.+|+....+. . +.+|++.|- -|++.|..+.+-|....|
T Consensus 12 ~~~I~G~i~~~-~~~---~~vyL~~~~~~-~-~~~ds~~v~---nG~F~f~~~~~~p~~~~l 64 (106)
T PF14289_consen 12 QFTIEGKIKGL-PDG---DKVYLYYYDNG-K-VVIDSVVVK---NGKFSFKGPLDEPGFYYL 64 (106)
T ss_pred cEEEEEEEcCC-CCC---CEEEEEEeCCC-C-EEEEEEEEe---CCEEEEEEeCCCCEEEEE
Confidence 44454444333 222 44555555332 2 899999764 899999988888876666
No 18
>TIGR01631 Trypano_RHS trypanosome RHS (retrotransposon hot spot) family. This model describes full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=21.53 E-value=56 Score=32.44 Aligned_cols=22 Identities=36% Similarity=0.732 Sum_probs=18.9
Q ss_pred cccccCCeEEEEEEEecCCCCC
Q psy10016 46 IEELKEDLEWKMIYVGSAESEE 67 (149)
Q Consensus 46 l~~L~~dlewKiiYVgSa~s~~ 67 (149)
-+.+..|+.|.||||=.+.|+.
T Consensus 703 WeefSr~msWEiIYVQh~Dstp 724 (760)
T TIGR01631 703 WDELSRQLVWEIIYVQHVDSTP 724 (760)
T ss_pred HHHHhhCCeEEEEEEEccCCcc
Confidence 3568999999999999998863
No 19
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.43 E-value=3.4e+02 Score=20.02 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=36.4
Q ss_pred eEEEEEEEcccccCCeEEEEEEEecC-CCCCCCeeeeeEEecccccceEEEEEEeCCCCCCCCCC
Q psy10016 38 RFELVFECIEELKEDLEWKMIYVGSA-ESEEYDQVLDTIYVGPIPEGKHMFVFEADPPDVNKIPE 101 (149)
Q Consensus 38 ~FeI~FEcl~~L~~dlewKiiYVgSa-~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pPd~~kIp~ 101 (149)
.|+|++. ....+..++--|++ .+-+.||-+=.+.+-. .|...+++++ ||+....|.
T Consensus 22 ~f~v~~~-----~~i~~v~Lvr~~~~THs~~~~QR~v~L~~~~--~~~~~~~v~~-P~n~~vaPP 78 (101)
T cd02851 22 TITVSTD-----SPISSASLVRYGSATHTVNTDQRRIPLTLFS--VGGNSYSVQI-PSDPGVALP 78 (101)
T ss_pred EEEEEEe-----ccceEEEEEecccccccccCCccEEEeeeEe--cCCCEEEEEc-CCCCCcCCC
Confidence 4555554 22467777777766 3457788766665443 4456778888 888888775
No 20
>PTZ00209 retrotransposon hot spot protein; Provisional
Probab=20.57 E-value=53 Score=32.29 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEcccccCCeEEEEEEEecCCCCC
Q psy10016 43 FECIEELKEDLEWKMIYVGSAESEE 67 (149)
Q Consensus 43 FEcl~~L~~dlewKiiYVgSa~s~~ 67 (149)
|+=-+.+..|+.|.||||=.++|+.
T Consensus 602 FngWeefSrdMsWEIIYVQhaDStp 626 (693)
T PTZ00209 602 FSDWDTFSRNMAWEMIYVNAIYGGV 626 (693)
T ss_pred hccHHHHhhCCeeEEEEEEccCCcc
Confidence 3445678999999999999998863
No 21
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=20.40 E-value=2.1e+02 Score=22.12 Aligned_cols=43 Identities=9% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccc
Q psy10016 33 FSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIP 81 (149)
Q Consensus 33 f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~ 81 (149)
|..-|.|+|..+ + .++...+. |-...+...++.+..+.+|+=.
T Consensus 67 fNEsF~Fdv~~~----~-~~v~l~v~-v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 67 WGETMIFPVTQQ----E-HGIQFLIK-LYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred ecceEEEeCCch----h-heeEEEEE-EEeCCCCcCCceEEEEEECCcc
Confidence 999999999864 1 23444432 3233445678889999999854
No 22
>PHA02766 hypothetical protein; Provisional
Probab=20.19 E-value=1.4e+02 Score=21.08 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=17.4
Q ss_pred ceeEEEEEEEcc----------------cccCCeEEEEE
Q psy10016 36 QFRFELVFECIE----------------ELKEDLEWKMI 58 (149)
Q Consensus 36 p~~FeI~FEcl~----------------~L~~dlewKii 58 (149)
.++|+|.||..+ +|.+++|.|+-
T Consensus 12 slkfkisfeineedyqqlielafsqfiyplndnieikin 50 (73)
T PHA02766 12 SLKFKISFEINEEDYQQLIELAFSQFIYPLNDNIEIKIN 50 (73)
T ss_pred heeEEEEEEECHHHHHHHHHHHHHhheeeCCCceEEEec
Confidence 367899999754 57888888874
No 23
>PF01410 COLFI: Fibrillar collagen C-terminal domain; InterPro: IPR000885 Collagens contain a large number of globular domains in between the regions of triple helical repeats IPR008160 from INTERPRO. These domains are involved in binding diverse substrates. One of these domains is found at the C terminus of fibrillar collagens. The exact function of this domain is unknown.; GO: 0005201 extracellular matrix structural constituent, 0005581 collagen
Probab=20.04 E-value=2.7e+02 Score=22.78 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=35.7
Q ss_pred EEEEEEccccc------CCeEEEEEEEecCC---------CCCCCeeeeeEEecccccceEEEEEEeCCCCCCCCCCCC
Q psy10016 40 ELVFECIEELK------EDLEWKMIYVGSAE---------SEEYDQVLDTIYVGPIPEGKHMFVFEADPPDVNKIPEKD 103 (149)
Q Consensus 40 eI~FEcl~~L~------~dlewKiiYVgSa~---------s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pPd~~kIp~~d 103 (149)
.|||.|..... .+...-+.+.|+.+ ...+.-..|.+....-..|+..|.| .-.+++++|.-|
T Consensus 116 ~iTy~C~ns~~~~d~~~~~~~~ai~~~g~n~~~~~~~~~~~~~~~vl~D~C~~~~~~~~~tv~e~--~T~~~~~LPIvD 192 (214)
T PF01410_consen 116 NITYHCKNSVAWYDQSTGSYNKAIRFRGDNDEELSYDGDSRFRYNVLEDGCKSKDGQWGKTVFEF--RTQKPSRLPIVD 192 (214)
T ss_pred eEEEEcCCCccccccccCCcccceEEEcCCCCEEecCCCCcceeEEEeccccccCCCcceEEEEE--eCCCccccCeee
Confidence 57777766532 23344455555432 3345566788887655555555555 555888899433
Done!