Query psy10016
Match_columns 149
No_of_seqs 108 out of 171
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 15:43:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1roc_A Anti-silencing protein 100.0 1.3E-73 4.3E-78 449.5 14.3 135 15-149 1-135 (155)
2 2i32_A Anti-silencing factor 1 100.0 1.3E-72 4.3E-77 453.0 13.6 138 12-149 22-159 (182)
3 2idc_A Anti-silencing protein 100.0 2.5E-72 8.5E-77 450.4 15.2 136 14-149 1-136 (179)
4 2io5_A ASF1A protein; chaperon 100.0 1.6E-72 5.4E-77 450.3 13.8 136 14-149 2-137 (175)
5 2cu9_A Spcia1, histone chapero 100.0 1.4E-71 4.8E-76 440.0 15.9 134 16-149 1-140 (161)
6 2hue_A Anti-silencing protein 100.0 7.2E-72 2.4E-76 446.5 13.1 136 14-149 5-140 (175)
7 2ag4_A GM2-AP, ganglioside GM2 67.5 8.8 0.0003 29.0 5.1 41 18-58 16-56 (164)
8 3sb1_A Hydrogenase expression 46.5 20 0.00068 27.8 3.9 25 54-82 113-137 (160)
9 3nkg_A Uncharacterized protein 21.7 1.3E+02 0.0045 23.7 4.8 36 53-91 116-151 (174)
10 2r51_A Vacuolar protein sortin 19.4 1E+02 0.0034 26.1 4.0 80 36-133 49-139 (340)
No 1
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone; 1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 2ygv_A
Probab=100.00 E-value=1.3e-73 Score=449.53 Aligned_cols=135 Identities=53% Similarity=0.995 Sum_probs=133.8
Q ss_pred ceeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCCC
Q psy10016 15 RMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADPP 94 (149)
Q Consensus 15 ~Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pP 94 (149)
+||+|||+||+|+||||+|++||+|||+|||+++|++|||||++|||||+|++|||+||+++|||+++|+|||+|+|+||
T Consensus 1 ~ms~V~i~~V~vl~np~~f~~p~~feI~fEc~e~L~~dlewkliYVgSa~s~~~DQ~Ld~v~vGPi~~G~~kFv~~adpP 80 (155)
T 1roc_A 1 GASIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADPP 80 (155)
T ss_dssp CCCSEEEEEEEECSCSEETTSCEEEEEEEEECSCCSSCEEEEEEECCCTTSSCTTEEEEEEEECSCCSEEEEEEEEECCC
T ss_pred CCcEEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCcEEEEEEEeCCCcccCceEeeEEEeccccceeEEEEEEcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCCCCCCCC
Q psy10016 95 DVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPEKPQFDK 149 (149)
Q Consensus 95 d~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~~p~~dk 149 (149)
|+++||.+|++||||+|||||||+|||+||||||||+|+|+||+||||++|++||
T Consensus 81 d~~~Ip~~dilGvTvillt~sY~~qEFiRVGYYVnn~Y~d~el~enpP~~~~~d~ 135 (155)
T 1roc_A 81 SAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDH 135 (155)
T ss_dssp CGGGCCTHHHHSCEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGG
T ss_pred CcccCChhhcceeEEEEEEEEECCcEEEEEEEEEeeeeCChHHccCCCCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999986
No 2
>2i32_A Anti-silencing factor 1 paralog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens} SCOP: b.1.22.1 PDB: 1tey_A 2iij_A 3aad_B
Probab=100.00 E-value=1.3e-72 Score=452.98 Aligned_cols=138 Identities=67% Similarity=1.197 Sum_probs=133.2
Q ss_pred cccceeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEe
Q psy10016 12 PIKRMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEA 91 (149)
Q Consensus 12 p~~~Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea 91 (149)
=.++||+|||+||+|+||||+|++||+|||+|||+++|++|||||++|||||+|+++||+||+++|||+++|+|||+|||
T Consensus 22 ~~~~Ms~V~i~~V~VlnNp~~F~dP~~FeItfEcle~L~~dleWkliYVGSa~s~~~DQ~Ldsv~VGPi~~G~~kFvfea 101 (182)
T 2i32_A 22 FQGSMAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQA 101 (182)
T ss_dssp ----CCSEEEEEEEECSCSEETTSCEEEEEEEEESSCCSSCEEEEEEEESCSSCGGGEEEEEEEEECCCCSEEEEEEEEE
T ss_pred ecCCccEEEEEEEEEeCCchhcCCCeEEEEEEEEccccCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEe
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCCCCCCCC
Q psy10016 92 DPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPEKPQFDK 149 (149)
Q Consensus 92 ~pPd~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~~p~~dk 149 (149)
+|||++|||.+|++|||||||||||++|||+||||||||+|+|+||+||||++|++||
T Consensus 102 dpPd~~kIP~~dilGVTviLlt~sY~~qEFiRVGYYVnneY~d~eL~enPP~~p~~d~ 159 (182)
T 2i32_A 102 DAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSK 159 (182)
T ss_dssp CCCCGGGSCHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGG
T ss_pred CCCCcccCChhhcceeEEEEEEEEECCeEEEEEEEEEeeeeCChHHccCCCCCcChHH
Confidence 9999999999999999999999999999999999999999999999999999999986
No 3
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold, ASF1, chaperone, chromatin, repli chaperone complex; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-72 Score=450.40 Aligned_cols=136 Identities=53% Similarity=0.991 Sum_probs=133.1
Q ss_pred cceeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCC
Q psy10016 14 KRMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADP 93 (149)
Q Consensus 14 ~~Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~p 93 (149)
.+||.|||+||+|+||||+|++||+|||+|||+++|++|||||++|||||+|++|||+||+++|||+++|+|||+|+|+|
T Consensus 1 ~~ms~V~l~~V~VlnNp~~f~dP~~FeI~fEcle~L~~dleWkliYVgSa~s~~~DQ~Ldsv~VGPi~~G~~kFv~~adp 80 (179)
T 2idc_A 1 SNASIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADP 80 (179)
T ss_dssp --CCSEEEEEEEEESCSEETTSCEEEEEEEEECSCCSSCEEEEEEECSCTTCGGGCEEEEEEEECSCCSEEEEEEEEECC
T ss_pred CCccEEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCcEEEEEEEcCCCcccCCeEeeEEEECCccceeEEEEEEcCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCCCCCCCC
Q psy10016 94 PDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPEKPQFDK 149 (149)
Q Consensus 94 Pd~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~~p~~dk 149 (149)
||+++||.+|++|||||||||||++|||+||||||||+|+|+||+||||++|++||
T Consensus 81 Pd~~~IP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~~~~d~ 136 (179)
T 2idc_A 81 PSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDH 136 (179)
T ss_dssp CCGGGSCTTTTTSCEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGG
T ss_pred CCcccCChhhcceeEEEEEEEEECCeEEEEEEEEEecccCChHHhhCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999986
No 4
>2io5_A ASF1A protein; chaperone, chaperone-structural protein complex; 2.70A {Homo sapiens} SCOP: b.1.22.1
Probab=100.00 E-value=1.6e-72 Score=450.30 Aligned_cols=136 Identities=68% Similarity=1.233 Sum_probs=133.1
Q ss_pred cceeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCC
Q psy10016 14 KRMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADP 93 (149)
Q Consensus 14 ~~Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~p 93 (149)
++||+|||+||+|+||||+|++||+|||+|||+++|++|||||++|||||+|++|||+||+++|||+++|+|||+|+|+|
T Consensus 2 ~~Ms~V~l~~V~vlnNp~~f~~P~~FeI~fEc~e~L~~dleWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adp 81 (175)
T 2io5_A 2 SHMAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA 81 (175)
T ss_dssp --CCCEEEEEEEECSCSEETTSCEEEEEEEEESSCCCSCEEEEEEEECCTTCGGGEEEEEEEEECSCCSEEEEEEEEECC
T ss_pred CcccEEEEEEEEEeCCccccCCCeEEEEEEEeccccCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEeCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCCCCCCCC
Q psy10016 94 PDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPEKPQFDK 149 (149)
Q Consensus 94 Pd~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~~p~~dk 149 (149)
||+++||.+|++||||||||||||+|||+||||||||+|+|+||+||||++|++||
T Consensus 82 Pd~~~IP~~dilGvTvillt~sY~~qEFiRVGYYVnneY~d~el~enPP~~~~~~~ 137 (175)
T 2io5_A 82 PNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSK 137 (175)
T ss_dssp CCGGGSCHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGG
T ss_pred CChhhCChhhcceeEEEEEEEEECCcEEEEEEEEEeeeeCChhhccCCCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999986
No 5
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe} SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Probab=100.00 E-value=1.4e-71 Score=440.05 Aligned_cols=134 Identities=55% Similarity=1.011 Sum_probs=132.7
Q ss_pred eeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCCCC
Q psy10016 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADPPD 95 (149)
Q Consensus 16 Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~pPd 95 (149)
||+|||+||+|+||||+|++||+|||+|||+++|++|||||++|||||+|++|||+||+++|||+++|+|||+|+|+|||
T Consensus 1 ms~V~i~~V~vlnnp~~f~~p~~feI~fEc~e~L~~dlewkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adpPd 80 (161)
T 2cu9_A 1 MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTLLVGPIPIGINKFVFEADPPN 80 (161)
T ss_dssp CCSEEEEEEEESSCSEETTSCEEEEEEEEECSCCSSCEEEEEEEESSTTSCCCEEEEEEEEECSCCSEEEEEEEEECCCC
T ss_pred CCeEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCeEEEEEEEcCCCCccCCeEeeEEEECCccceEEEEEEEcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-CCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCC-----CCCCCC
Q psy10016 96 VNKIPE-KDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPE-----KPQFDK 149 (149)
Q Consensus 96 ~~kIp~-~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~-----~p~~dk 149 (149)
+++||. +|++||||+|||||||+|||+||||||||+|+|+||+||||+ +|++||
T Consensus 81 ~~~IP~~~dilGvTvillt~sY~~qEFiRVGYYVnneY~d~el~enpP~~~~~~~p~~~~ 140 (161)
T 2cu9_A 81 IDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAEIKKVKVDISK 140 (161)
T ss_dssp GGGSSCGGGGSEEEEEEEEEEETTEEEEEEEEEEEEEETTCCGGGSCHHHHTTSCCCGGG
T ss_pred hhHCCCcccceeeEEEEEEEEECCeEEEEEEEEEeceeCChHHccCCcchhccCCcchHH
Confidence 999999 999999999999999999999999999999999999999999 999875
No 6
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Probab=100.00 E-value=7.2e-72 Score=446.47 Aligned_cols=136 Identities=53% Similarity=0.988 Sum_probs=133.1
Q ss_pred cceeeeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEeCC
Q psy10016 14 KRMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEADP 93 (149)
Q Consensus 14 ~~Ms~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea~p 93 (149)
.+||+|||+||+|+||||+|++||+|||+|||+++|++|||||++|||||+|++|||+||+++|||+++|+|||+|+|+|
T Consensus 5 ~~ms~V~l~~V~VlnNp~~f~dP~~FeI~fEcle~L~~dleWkliYVgSa~s~~~DQ~Ld~v~VGPi~~G~~kFv~~adp 84 (175)
T 2hue_A 5 PNSSIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSILVGPVPVGVNKFVFSADP 84 (175)
T ss_dssp --CCSEEEEEEEECSCSEETTSCEEEEEEEEECSCCSSCEEEEEEEESCTTCGGGEEEEEEEEECSCCSEEEEEEEEECC
T ss_pred CCCCEEEEEEEEEeCCchhcCCCeEEEEEEEEcccCCCCcEEEEEEEcCCCCccCCeEeeEEEECCccceeEEEEEEcCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCceeeEEEEEEEEeCCceeeEEEeeeecccCCcccccCCCCCCCCCC
Q psy10016 94 PDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPELKENPPEKPQFDK 149 (149)
Q Consensus 94 Pd~~kIp~~dilGvTviLlt~sY~~qEFiRIGYYVnneY~d~eL~enpP~~p~~dk 149 (149)
||++|||.+|++||||||||||||+|||+||||||||+|+|+||+||||++|++||
T Consensus 85 Pd~~~IP~~dilGvTviLlt~sY~~qEFiRVGYYVnneY~d~el~enpP~~~~~d~ 140 (175)
T 2hue_A 85 PSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKVQVDH 140 (175)
T ss_dssp CCGGGSCHHHHTSCEEEEEEEEETTEEEEEEEEEEEEEESSHHHHHSCCSSCCGGG
T ss_pred CChhhCChhhccceEEEEEEEEECCeEEEEEEEEEecccCChHHhhCCCCCccHHH
Confidence 99999999999999999999999999999999999999999999999999999986
No 7
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=67.47 E-value=8.8 Score=28.95 Aligned_cols=41 Identities=10% Similarity=0.112 Sum_probs=37.6
Q ss_pred eeEEeeEEEccCCCcCCCceeEEEEEEEcccccCCeEEEEE
Q psy10016 18 KVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMI 58 (149)
Q Consensus 18 ~V~v~~V~v~~np~~f~~p~~FeI~FEcl~~L~~dlewKii 58 (149)
.+.|.+|.+..||.....++.+.+.++..++|.+.+.|.+.
T Consensus 16 ~~~i~~v~i~PdP~~~g~~~ti~~~~~l~~~i~~g~k~~v~ 56 (164)
T 2ag4_A 16 PAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLV 56 (164)
T ss_dssp SEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEE
T ss_pred eEEEeEEEEeCCCCCCCCceEEEEEEEEeeccCCCCEEEEE
Confidence 57899999999999999999999999999999999877663
No 8
>3sb1_A Hydrogenase expression protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, HUPH, unkno function; HET: PGE; 1.67A {Thiobacillus denitrificans}
Probab=46.53 E-value=20 Score=27.83 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=20.0
Q ss_pred EEEEEEEecCCCCCCCeeeeeEEeccccc
Q psy10016 54 EWKMIYVGSAESEEYDQVLDTIYVGPIPE 82 (149)
Q Consensus 54 ewKiiYVgSa~s~~~DQ~Lds~~VGPi~~ 82 (149)
-|.+.|..| .-..+||.++||++|.
T Consensus 113 VWrV~~~ns----~~~~ildtIEV~~vP~ 137 (160)
T 3sb1_A 113 VWWIIHRNA----QGAVTTQFIEVAFVPE 137 (160)
T ss_dssp EEEEEEECT----TSCEEEEEEEESSSCG
T ss_pred EEEEEEECC----CCCEEeeEEEEeCCCH
Confidence 499999855 3445899999999995
No 9
>3nkg_A Uncharacterized protein GEBA250068378; GEBA target, BATA-fold, structural genomics, PSI-2, protein initiative; 2.00A {Sulfurospirillum deleyianum}
Probab=21.73 E-value=1.3e+02 Score=23.74 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=28.8
Q ss_pred eEEEEEEEecCCCCCCCeeeeeEEecccccceEEEEEEe
Q psy10016 53 LEWKMIYVGSAESEEYDQVLDTIYVGPIPEGKHMFVFEA 91 (149)
Q Consensus 53 lewKiiYVgSa~s~~~DQ~Lds~~VGPi~~G~~kF~~ea 91 (149)
+-=|+++..+-.+..+++..+.+. ++.|++.+++|+
T Consensus 116 i~Dkiy~t~G~G~~~~~ReIk~Ls---L~~GKYrIvIET 151 (174)
T 3nkg_A 116 IADNLYMTKGNGSGAYTRDITTIS---LDKGKYIFRIEN 151 (174)
T ss_dssp EEEEEEEECSCCSSTTEEEEEEEE---ECSEEEEEEEEE
T ss_pred EEEEEEecCCCchhhhhhhhhhee---cCCCcEEEEEEe
Confidence 333566666777889999999995 678999999997
No 10
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=19.45 E-value=1e+02 Score=26.13 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=43.0
Q ss_pred ceeEEEEEEEc---ccccCCeEEEEEEEecCCC----CCCCeeee--eEE--ecccccceEEEEEEeCCCCCCCCCCCCc
Q psy10016 36 QFRFELVFECI---EELKEDLEWKMIYVGSAES----EEYDQVLD--TIY--VGPIPEGKHMFVFEADPPDVNKIPEKDV 104 (149)
Q Consensus 36 p~~FeI~FEcl---~~L~~dlewKiiYVgSa~s----~~~DQ~Ld--s~~--VGPi~~G~~kF~~ea~pPd~~kIp~~di 104 (149)
...=.++.++. +++++. -.||..+|.++. .+..+-+. .-+ =|=++.|+| |-|+...| .+++.
T Consensus 49 ~VsG~V~I~~~~~~k~l~h~-GIki~~~G~~e~~~~~~~~~~f~~~~~eL~~pG~L~~G~~-fpF~F~lp--~~l~e--- 121 (340)
T 2r51_A 49 TVSGKVSLSLKNPNKRLEHQ-GIKIEFIGQIELYYDRGNHHEFVSLVKDLARPGEITQSQA-FDFEFTHV--EKPYE--- 121 (340)
T ss_dssp CEEEEEEEEESSTTSCEEES-CEEEEEEEEEEEGGGTTCCEEEEEEEEEEECSEEECSCEE-EEEEECSB--CCCSC---
T ss_pred EEEEEEEEEECCCCCeeEEE-EEEEEEEEEEEEEecCCCcEEEEEEEEEecCCCccCCCcE-EeeEeCCC--CCCCc---
Confidence 33446666666 444432 344555566532 12222111 111 255789999 99999887 34442
Q ss_pred eeeEEEEEEEEeCCceeeEEEeeeecccC
Q psy10016 105 LGVTVVLLTCSYRGNEFVRVGFFVNNEYA 133 (149)
Q Consensus 105 lGvTviLlt~sY~~qEFiRIGYYVnneY~ 133 (149)
||.|. |.||-|||.....
T Consensus 122 ----------Sy~G~-~g~IrY~vkv~i~ 139 (340)
T 2r51_A 122 ----------SYTGQ-NVKLRYFLRATIS 139 (340)
T ss_dssp ----------CEECS-SEEEEEEEEEEEC
T ss_pred ----------CeEee-eEEEEEEEEEEEE
Confidence 45554 5677777755433
Done!