RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10016
(149 letters)
>2i32_A Anti-silencing factor 1 paralog A; histone deposition, chromatin
regulation, histone chaperones, ASF1, HIRA, CAF-1,
replication chaperone; 2.70A {Homo sapiens} SCOP:
b.1.22.1 PDB: 1tey_A 2iij_A 3aad_B
Length = 182
Score = 200 bits (510), Expect = 4e-67
Identities = 92/134 (68%), Positives = 112/134 (83%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
MAKVQ+ NV VLDN SPF F+FE+ FECIE+L EDLEWK+IYVGSAESEEYDQVLD++
Sbjct: 26 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 85
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADP 135
VGP+P G+HMFVF+AD P+ IP+ D +GVTVVL+TC+YRG EF+RVG++VNNEY +
Sbjct: 86 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 145
Query: 136 ELKENPPEKPQFDK 149
EL+ENPP KP F K
Sbjct: 146 ELRENPPVKPDFSK 159
>2io5_A ASF1A protein; chaperone, chaperone-structural protein complex;
2.70A {Homo sapiens} SCOP: b.1.22.1
Length = 175
Score = 194 bits (495), Expect = 6e-65
Identities = 92/134 (68%), Positives = 112/134 (83%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
MAKVQ+ NV VLDN SPF F+FE+ FECIE+L EDLEWK+IYVGSAESEEYDQVLD++
Sbjct: 4 MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 63
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADP 135
VGP+P G+HMFVF+AD P+ IP+ D +GVTVVL+TC+YRG EF+RVG++VNNEY +
Sbjct: 64 LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 123
Query: 136 ELKENPPEKPQFDK 149
EL+ENPP KP F K
Sbjct: 124 ELRENPPVKPDFSK 137
>1roc_A Anti-silencing protein 1; beta-sandwich, replication, chaperone;
1.50A {Saccharomyces cerevisiae} SCOP: b.1.22.1 PDB:
2ygv_A
Length = 155
Score = 192 bits (490), Expect = 2e-64
Identities = 72/133 (54%), Positives = 96/133 (72%)
Query: 17 AKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIY 76
+ V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I
Sbjct: 3 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 62
Query: 77 VGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPE 136
VGP+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY + E
Sbjct: 63 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 122
Query: 137 LKENPPEKPQFDK 149
L+ENPP K Q D
Sbjct: 123 LRENPPAKVQVDH 135
>2hue_A Anti-silencing protein 1; mini beta sheet, elongated beta
sandwhich, DNA binding prote; 1.70A {Saccharomyces
cerevisiae} SCOP: b.1.22.1 PDB: 1wg3_A
Length = 175
Score = 190 bits (483), Expect = 4e-63
Identities = 72/133 (54%), Positives = 96/133 (72%)
Query: 17 AKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIY 76
+ V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I
Sbjct: 8 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 67
Query: 77 VGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPE 136
VGP+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY + E
Sbjct: 68 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 127
Query: 137 LKENPPEKPQFDK 149
L+ENPP K Q D
Sbjct: 128 LRENPPAKVQVDH 140
>2idc_A Anti-silencing protein 1 and histone H3 chimera; IG-like fold,
ASF1, chaperone, chromatin, repli chaperone complex;
2.20A {Saccharomyces cerevisiae}
Length = 179
Score = 187 bits (477), Expect = 4e-62
Identities = 72/133 (54%), Positives = 96/133 (72%)
Query: 17 AKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIY 76
+ V L + VL+N + F+ + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I
Sbjct: 4 SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 63
Query: 77 VGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPE 136
VGP+P G + FVF ADPP IP +++ VTV+LL+CSY G EFVRVG++VNNEY + E
Sbjct: 64 VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 123
Query: 137 LKENPPEKPQFDK 149
L+ENPP K Q D
Sbjct: 124 LRENPPAKVQVDH 136
>2cu9_A Spcia1, histone chaperone CIA1; immunoglobulin fold, structural
genomics, NPPSFA; 1.80A {Schizosaccharomyces pombe}
SCOP: b.1.22.1 PDB: 2dze_A* 2z34_A 2z3f_A
Length = 161
Score = 182 bits (462), Expect = 4e-60
Identities = 73/135 (54%), Positives = 100/135 (74%), Gaps = 1/135 (0%)
Query: 16 MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
M+ V + +V VL+N + FS ++FE+ FEC+E LK DLEWK+ YVGSA S+ YDQ+LDT+
Sbjct: 1 MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTL 60
Query: 76 YVGPIPEGKHMFVFEADPPDVNKIPE-KDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYAD 134
VGPIP G + FVFEADPP+++ +P+ DVLGVTV+LL+C+Y NEFVRVG++VNNE
Sbjct: 61 LVGPIPIGINKFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEG 120
Query: 135 PELKENPPEKPQFDK 149
L+E + + K
Sbjct: 121 LNLQEMDDAEIKKVK 135
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 7e-04
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 34/114 (29%)
Query: 22 TNVTVLDNSSPFSQQFRFELVFECIEELKEDL--E------------WKMIYVGSAESEE 67
T++++ +S + L+ + ++ +DL E + I G A +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 68 YDQV----LDTI------YVGPIPEGKHMF----VFEADPPDVNKIPEKDVLGV 107
+ V L TI + P E + MF VF PP + IP +L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVF---PPSAH-IPTI-LLSL 394
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; TIM barrel, methyltetrahydrofolate,
zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
1xdj_A 1xr2_A* 1xpg_A*
Length = 766
Score = 26.3 bits (58), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 68 YDQVLDTIY-VGPIPE 82
YD VLDT VG +PE
Sbjct: 96 YDFVLDTAVMVGAVPE 111
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II
terpene cyclase fold, class II diterpene CYCL DXXDD
motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB:
3pyb_A*
Length = 727
Score = 26.0 bits (56), Expect = 7.1
Identities = 11/72 (15%), Positives = 29/72 (40%)
Query: 5 LPSMEIIPIKRMAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAE 64
L M + +++ K+Q + + L + S + F C+E L+ ++ V +
Sbjct: 182 LEGMRDLDWEKLLKLQSQDGSFLFSPSSTAFAFMQTRDSNCLEYLRNAVKRFNGGVPNVF 241
Query: 65 SEEYDQVLDTIY 76
+ + + +
Sbjct: 242 PVDLFEHIWIVD 253
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.407
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,420,024
Number of extensions: 139678
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 19
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)