RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10016
         (149 letters)



>d2i32a1 b.1.22.1 (A:1-154) Anti-silencing protein 1, ASF1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 154

 Score =  216 bits (551), Expect = 4e-74
 Identities = 92/134 (68%), Positives = 112/134 (83%)

Query: 16  MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
           MAKVQ+ NV VLDN SPF   F+FE+ FECIE+L EDLEWK+IYVGSAESEEYDQVLD++
Sbjct: 1   MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSV 60

Query: 76  YVGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADP 135
            VGP+P G+HMFVF+AD P+   IP+ D +GVTVVL+TC+YRG EF+RVG++VNNEY + 
Sbjct: 61  LVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTET 120

Query: 136 ELKENPPEKPQFDK 149
           EL+ENPP KP F K
Sbjct: 121 ELRENPPVKPDFSK 134


>d1roca_ b.1.22.1 (A:) Anti-silencing protein 1, ASF1 {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 155

 Score =  209 bits (534), Expect = 2e-71
 Identities = 72/133 (54%), Positives = 96/133 (72%)

Query: 17  AKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTIY 76
           + V L  + VL+N + F+  + FE+ FEC+E LK DLEWK+ YVGS+ S ++DQ LD+I 
Sbjct: 3   SIVSLLGIKVLNNPAKFTDPYEFEITFECLESLKHDLEWKLTYVGSSRSLDHDQELDSIL 62

Query: 77  VGPIPEGKHMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNNEYADPE 136
           VGP+P G + FVF ADPP    IP  +++ VTV+LL+CSY G EFVRVG++VNNEY + E
Sbjct: 63  VGPVPVGVNKFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEE 122

Query: 137 LKENPPEKPQFDK 149
           L+ENPP K Q D 
Sbjct: 123 LRENPPAKVQVDH 135


>d2cu9a1 b.1.22.1 (A:1-161) Anti-silencing protein 1, ASF1
           {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 161

 Score =  203 bits (519), Expect = 4e-69
 Identities = 74/140 (52%), Positives = 99/140 (70%), Gaps = 6/140 (4%)

Query: 16  MAKVQLTNVTVLDNSSPFSQQFRFELVFECIEELKEDLEWKMIYVGSAESEEYDQVLDTI 75
           M+ V + +V VL+N + FS  ++FE+ FEC+E LK DLEWK+ YVGSA S+ YDQ+LDT+
Sbjct: 1   MSIVNILSVNVLNNPAKFSDPYKFEITFECLEPLKSDLEWKLTYVGSATSQSYDQILDTL 60

Query: 76  YVGPIPEGKHMFVFEADPPDVNKIPEK-DVLGVTVVLLTCSYRGNEFVRVGFFVNNEYAD 134
            VGPIP G + FVFEADPP+++ +P+  DVLGVTV+LL+C+Y  NEFVRVG++VNNE   
Sbjct: 61  LVGPIPIGINKFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEG 120

Query: 135 PELKEN-----PPEKPQFDK 149
             L+E         K    K
Sbjct: 121 LNLQEMDDAEIKKVKVDISK 140


>d2g9ga1 b.18.1.29 (A:454-561) Peptide:N-glycanase, PNGase,
          C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 108

 Score = 26.3 bits (58), Expect = 0.90
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 9/47 (19%)

Query: 26 VLDNSSPF----SQQFRFELVFECIEELKEDLEWKMIYVGSAESEEY 68
          V DN++      +  ++ E +F      K + +W M+Y+   E   +
Sbjct: 51 VSDNNTNISGWENGVWKMESIFR-----KVEKDWNMVYLARKEGSSF 92


>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 224

 Score = 25.8 bits (57), Expect = 1.8
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 90  EADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNN 130
           +    D  ++    +L V +V  T + RG+  V  G  VN+
Sbjct: 164 QTSVQDQEEL--SSLLQVPLVAGTVN-RGSSVVGAGMVVND 201


>d1qjwa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Trichoderma
           reesei, Cel6a [TaxId: 51453]}
          Length = 362

 Score = 25.7 bits (56), Expect = 2.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 115 SYRGNEFVRVGFFVNNEYADP 135
           +Y GN FV V  + N  YA  
Sbjct: 2   TYSGNPFVGVTPWANAYYASE 22


>d1dysa_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola
           insolens, Cel6b [TaxId: 34413]}
          Length = 345

 Score = 25.3 bits (55), Expect = 3.4
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 118 GNEFVRVGFFVNNEYADP 135
           GN F      VN++Y+  
Sbjct: 1   GNPFSGRTLLVNSDYSSK 18


>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 150

 Score = 24.8 bits (54), Expect = 3.7
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 85  HMFVFEADPPDVNKIPEKDVLGVTVVLLTCSYRGNE 120
           +M   +    +V    E   + +T + L+ SY GNE
Sbjct: 61  YMLCRDVISSEVGSDHELQAVLLTCLYLSYSYMGNE 96


>d1g61a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 225

 Score = 23.9 bits (52), Expect = 8.0
 Identities = 5/41 (12%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 90  EADPPDVNKIPEKDVLGVTVVLLTCSYRGNEFVRVGFFVNN 130
             +  ++  +  K +  V  +    + +G   V      N+
Sbjct: 164 LVEDDELEFL--KSLFKVEYIGKGTANKGTTSVGACIIANS 202


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.139    0.407 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,674
Number of extensions: 28016
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 13
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)