RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10017
(324 letters)
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural
genomics, structural genomics consortium, SGC,
hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A
2czk_A 2ddk_A
Length = 273
Score = 294 bits (755), Expect = e-100
Identities = 95/239 (39%), Positives = 132/239 (55%), Gaps = 32/239 (13%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDH 64
+E V LA G+++R+ ++K+V K +A DLVTETD VE +I+ + E++P H
Sbjct: 2 EECFQAAVQLALRAGQIIRKALTEEKRVSTKTSAADLVTETDHLVEDLIISELRERFPSH 61
Query: 65 KFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCP 124
+FI EE+ A G KC LT +PTWIIDPIDGT NFVH +P +SIG+ V + + GVIY
Sbjct: 62 RFIAEEAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHC 121
Query: 125 IMDWLYTARKGCGAFHNGTRIHESETDSF------------------------------- 153
+ LYT R+G GAF NG R+ S
Sbjct: 122 TEERLYTGRRGRGAFCNGQRLRVSGETDLSKALVLTEIGPKRDPATLKLFLSNMERLLHA 181
Query: 154 -VSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDKN 211
+R GS +A+ +ASG ADAY +F +H WD+AA V++ EAGG+VID +G +
Sbjct: 182 KAHGVRVIGSSTLALCHLASGAADAYYQFGLHCWDLAAATVIIREAGGIVIDTSGGPLD 240
Score = 152 bits (386), Expect = 1e-44
Identities = 54/120 (45%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Query: 194 LVTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYIY---RFIGEESTADGIKCELTSNPT 250
LVTE D VE I + + RFI EE+ A G KC LT +PT
Sbjct: 38 LVTET----------DH-LVEDLII----SELRERFPSHRFIAEEAAASGAKCVLTHSPT 82
Query: 251 WIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFHNGTRI 310
WIIDPIDGT NFVH +P +SIG+ V + + GVIY + LYT R+G GAF NG R+
Sbjct: 83 WIIDPIDGTCNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERLYTGRRGRGAFCNGQRL 142
>3t0j_A Impase II, inositol monophosphatase family protein; FIG
superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus
aureus}
Length = 283
Score = 293 bits (753), Expect = 2e-99
Identities = 71/242 (29%), Positives = 106/242 (43%), Gaps = 29/242 (11%)
Query: 4 TQEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPD 63
+ + F L +E G +++ +Q +E K N DLVT DK E + I E YP+
Sbjct: 8 SMALYGFAQGLIQEAGIRIKQLMEQNLTIETKSNPNDLVTNVDKATEDFIFDTILETYPN 67
Query: 64 HKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 123
H+ +GEE G + + W++DPIDGT+NFVH NF ISIG +D P G +Y
Sbjct: 68 HQVLGEEGH--GHDIDTSKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYD 125
Query: 124 PIMDWLYTARKGCGAFHNGTRIHESETDSF---------------------------VSS 156
+ D LY A+ G GA+ + + S
Sbjct: 126 VMADVLYHAKVGEGAYRGSQPLKPLNDSNLRQSIIGINPNWLTKPILGEIFKEIVNDSRS 185
Query: 157 IRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDKNRVEQS 216
R GS + + VA+G +AYM + WD A G V++ E G + G+ +
Sbjct: 186 ARAYGSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYEVNGQASNLLGEPLTISGPN 245
Query: 217 TI 218
+I
Sbjct: 246 SI 247
Score = 145 bits (367), Expect = 1e-41
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
++ +GEE G + + W++DPIDGT+NFVH NF ISIG +D P G +Y
Sbjct: 68 HQVLGEEGH--GHDIDTSKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYD 125
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
+ D LY A+ G GA+ +
Sbjct: 126 VMADVLYHAKVGEGAYRGSQPL 147
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase
mechanism, aspartyl protease, succinimide, zymogen;
1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A
1ime_A 1imf_A 2hhm_A 1awb_A
Length = 277
Score = 291 bits (748), Expect = 8e-99
Identities = 105/239 (43%), Positives = 136/239 (56%), Gaps = 32/239 (13%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDH 64
QE D+ V LA + GE+VRE K + + K + DLVT TD++VEK LI I EKYP H
Sbjct: 6 QECMDYAVTLAGQAGEVVREALKNEMNIMVKSSPADLVTATDQKVEKMLITSIKEKYPSH 65
Query: 65 KFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCP 124
FIGEES A G K LT NPTWIIDPIDGT NFVHG+P +SIG+VV+K + G++Y
Sbjct: 66 SFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSC 125
Query: 125 IMDWLYTARKGCGAFHNGTRIHESETDSF------------------------------- 153
+ D +YT RKG GAF NG ++ S +
Sbjct: 126 LEDKMYTGRKGKGAFCNGQKLQVSHQEDITKSLLVTELGSSRTPETVRIILSNIERLLCL 185
Query: 154 -VSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDKN 211
+ IR G+ + M LVA+G ADAY E +H WD+A ++VTEAGGV++D G +
Sbjct: 186 PIHGIRGVGTAALNMCLVAAGAADAYYEMGIHCWDVAGAGIIVTEAGGVLLDVTGGPFD 244
Score = 151 bits (385), Expect = 2e-44
Identities = 57/120 (47%), Positives = 71/120 (59%), Gaps = 18/120 (15%)
Query: 194 LVTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYIY---RFIGEESTADGIKCELTSNPT 250
LVT D+ +VE+ I I Y FIGEES A G K LT NPT
Sbjct: 42 LVTAT----------DQ-KVEKMLI----TSIKEKYPSHSFIGEESVAAGEKSILTDNPT 86
Query: 251 WIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFHNGTRI 310
WIIDPIDGT NFVHG+P +SIG+VV+K + G++Y + D +YT RKG GAF NG ++
Sbjct: 87 WIIDPIDGTTNFVHGFPFVAVSIGFVVNKKMEFGIVYSCLEDKMYTGRKGKGAFCNGQKL 146
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG
superfamily protein, hydrolase; HET: SRT; 2.37A
{Staphylococcus aureus} PDB: 3qmf_A
Length = 273
Score = 269 bits (691), Expect = 3e-90
Identities = 56/237 (23%), Positives = 101/237 (42%), Gaps = 26/237 (10%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDH 64
Q+++ + + K+ ++ + + E K + DLVT DK+++++ ++ +P+H
Sbjct: 15 QQIDKLICSWLKQIDNVIPQLIM-EMTTETKRHRFDLVTNVDKQIQQQFQQFLATYFPEH 73
Query: 65 KFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCP 124
+ + EE + I N WI+DPIDGT N V ++CI + Y + P + +Y
Sbjct: 74 QLLAEEKSNAMI--TNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYDY 131
Query: 125 IMDWLYTARKGCGAFHNGTRIHESETDSF-----------------------VSSIRTAG 161
LY A +G GAF NG ++ E + S R G
Sbjct: 132 PHKKLYKAIRGEGAFCNGIKMEEPPSLKLEDAIISFNAQVMNLDTVQDLFDASFSYRLVG 191
Query: 162 SCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDKNRVEQSTI 218
+C + VA G A++ N WD+AA + + GK + ++ +
Sbjct: 192 ACGLDSMRVAKGQFGAHINTNPKPWDIAAQFLFAELLNLKMTTLDGKAIDHLKGAPF 248
Score = 136 bits (344), Expect = 3e-38
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
++ + EE + I N WI+DPIDGT N V ++CI + Y + P + +Y
Sbjct: 73 HQLLAEEKSNAMI--TNEINHLWIMDPIDGTANLVKQQEDYCIILAYFYEGKPMLSYVYD 130
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
LY A +G GAF NG ++
Sbjct: 131 YPHKKLYKAIRGEGAFCNGIKM 152
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
hydrolase; 2.60A {Mycobacterium tuberculosis}
Length = 299
Score = 239 bits (613), Expect = 4e-78
Identities = 66/249 (26%), Positives = 97/249 (38%), Gaps = 44/249 (17%)
Query: 5 QEMEDFVVNLAKECGELVRER----------NKQKKKVEEKLNAVDLVTETDKEVEKRLI 54
+ NLA E VR R V K + D VT D + E+ L
Sbjct: 9 ARLRSVAENLAAEAAAFVRGRRAEVFGISRAGDGDGAVRAKSSPTDPVTVVDTDTERLLR 68
Query: 55 AGISEKYPDHKFIGEESTAD-GIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVD 113
+++ P +GEE + + TW++DPIDGT+NFV+G P + +SIG V
Sbjct: 69 DRLAQLRPGDPILGEEGGGPADVTATPSDRVTWVLDPIDGTVNFVYGIPAYAVSIGAQVG 128
Query: 114 KVPQMGVIYCPIMDWLYTARKGCGAFHNGTR----IHESETDSF---------------- 153
+ G + +Y+A G GA R + + D
Sbjct: 129 GITVAGAVADVAARTVYSAATGLGAHLTDERGRHVLRCTGVDELSMALLGTGFGYSVRCR 188
Query: 154 -------------VSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGG 200
V +R GS + + +VA+G DAY E V WD AAGA++ EAG
Sbjct: 189 EKQAELLAHVVPLVRDVRRIGSAALDLCMVAAGRLDAYYEHGVQVWDCAAGALIAAEAGA 248
Query: 201 VVIDPAGKD 209
V+ +
Sbjct: 249 RVLLSTPRA 257
Score = 127 bits (320), Expect = 1e-34
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 229 YRFIGEESTAD-GIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIY 287
+GEE + + TW++DPIDGT+NFV+G P + +SIG V + G +
Sbjct: 78 DPILGEEGGGPADVTATPSDRVTWVLDPIDGTVNFVYGIPAYAVSIGAQVGGITVAGAVA 137
Query: 288 CPIMDWLYTARKGCGAFHNGTR 309
+Y+A G GA R
Sbjct: 138 DVAARTVYSAATGLGAHLTDER 159
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
maritima} PDB: 2p3v_A*
Length = 256
Score = 232 bits (595), Expect = 5e-76
Identities = 78/227 (34%), Positives = 118/227 (51%), Gaps = 30/227 (13%)
Query: 9 DFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFIG 68
DF + L ++ G L+ + VE+K D+VTE D+E ++ ++ I + +PD +
Sbjct: 5 DFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMA 64
Query: 69 EESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDW 128
EE + + WIIDPIDGT+NFVHG PNF IS+ YV + ++GV++ P ++
Sbjct: 65 EEGIFEK------GDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNE 118
Query: 129 LYTARKGCGAFHNGTRIHESETDSF------------------------VSSIRTAGSCV 164
A +G GAF NG RI SE S IR GS
Sbjct: 119 TLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAA 178
Query: 165 IAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDKN 211
+ A V +G D ++ + ++ WD+AAG ++V EAGG+V D +GK+ N
Sbjct: 179 LNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEAN 225
Score = 124 bits (315), Expect = 3e-34
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
+ EE + + WIIDPIDGT+NFVHG PNF IS+ YV + ++GV++
Sbjct: 60 ENIMAEEGIFEK------GDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHA 113
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
P ++ A +G GAF NG RI
Sbjct: 114 PALNETLYAEEGSGAFFNGERI 135
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics,
NPPSFA, national project on protein structural AN
functional analyses; 2.60A {Aquifex aeolicus}
Length = 264
Score = 226 bits (578), Expect = 2e-73
Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 37/236 (15%)
Query: 1 MLPTQEMEDFVVNLAKECGELVRE--RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGIS 58
M ++ + A G++++E +K+ +EEK D V+ DK E+R+ I
Sbjct: 1 MENLKKYLEVAKIAALAGGQVLKENFGKVKKENIEEK-GEKDFVSYVDKTSEERIKEVIL 59
Query: 59 EKYPDHKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQM 118
+ +PDH+ +GEE A+G S W IDP+DGT N+++G+P F +S+G V + P +
Sbjct: 60 KFFPDHEVVGEEMGAEG----SGSEYRWFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIV 115
Query: 119 GVIYCPIMDWLYTARKGCGAFHNGTRIHESETDSF------------------------- 153
G +Y P D LY KG GA+ NG RI + +S
Sbjct: 116 GAVYLPYFDKLYWGAKGLGAYVNGKRIKVKDNESLKHAGVVYGFPSRSRRDISIYLNIFK 175
Query: 154 -----VSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVID 204
V S+R G+ + + +VA G D MEF + WD+ AG V++ EAGGV
Sbjct: 176 DVFYEVGSMRRPGAAAVDLCMVAEGIFDGMMEFEMKPWDITAGLVILKEAGGVYTL 231
Score = 123 bits (312), Expect = 1e-33
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
+ +GEE A+G S W IDP+DGT N+++G+P F +S+G V + P +G +Y
Sbjct: 65 HEVVGEEMGAEG----SGSEYRWFIDPLDGTKNYINGFPIFAVSVGLVKGEEPIVGAVYL 120
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
P D LY KG GA+ NG RI
Sbjct: 121 PYFDKLYWGAKGLGAYVNGKRI 142
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory
for structural genomics hyperthermophIle, PSI; 2.80A
{Pyrococcus furiosus} SCOP: e.7.1.1
Length = 262
Score = 225 bits (577), Expect = 3e-73
Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 28/229 (12%)
Query: 5 QEMEDFVVNLAKECGELVRE--RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYP 62
+ + +++ + + N K+ + + D DK E +++ I+E
Sbjct: 12 KFWREVAIDIISDFETTIMPFFGNPDGGKLVKISPSGDETKLVDKLAEDLILSRITELGV 71
Query: 63 DHKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIY 122
+ + EE S T I+DP+DG+ NF+ G P F +S+ P +IY
Sbjct: 72 N--VVSEEVGVID----NESEYTVIVDPLDGSYNFIAGIPFFALSLAVFKKDKPIYAIIY 125
Query: 123 CPIMDWLYTARKGCGAFHNGTRIHESETDSF------------------VSSIRTAGSCV 164
P+ + + G GAF NG RI +T V RT G+
Sbjct: 126 EPMTERFFEGIPGEGAFLNGKRIKVRKTPDEKPSISFYSRGKGHEIVKHVKRTRTLGAIA 185
Query: 165 IAMALVASGGADAYMEF--NVHAWDMAAGAVLVTEAGGVVIDPAGKDKN 211
+ +A +A G D ++ V D+AAG ++ EAG ++ D AGKD +
Sbjct: 186 LELAYLAMGALDGVVDVRKYVRPTDIAAGTIIAKEAGALIKDSAGKDID 234
Score = 123 bits (312), Expect = 8e-34
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 194 LVTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYIY-RFIGEESTADGIKCELTSNPTWI 252
DK E + IT + + EE S T I
Sbjct: 50 ETKLV----------DK-LAEDLIL----SRITELGVNVVSEEVGVID----NESEYTVI 90
Query: 253 IDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFHNGTRI 310
+DP+DG+ NF+ G P F +S+ P +IY P+ + + G GAF NG RI
Sbjct: 91 VDPLDGSYNFIAGIPFFALSLAVFKKDKPIYAIIYEPMTERFFEGIPGEGAFLNGKRI 148
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; 1.30A {Pyrococcus
horikoshii} SCOP: e.7.1.1
Length = 254
Score = 222 bits (569), Expect = 4e-72
Identities = 57/228 (25%), Positives = 95/228 (41%), Gaps = 27/228 (11%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVE--EKLNAVDLVTETDKEVEKRLIAGISEKYP 62
+ +++ ++ + K E + D DK E +I+ +
Sbjct: 4 KTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGV 63
Query: 63 DHKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIY 122
+ + EE S+ T ++DP+DG+ NF++G P F +S+ +K P IY
Sbjct: 64 N--VVSEEIGRID----QGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIY 117
Query: 123 CPIMDWLYTARKGCGAFHNGTRIHESETDSF-----------------VSSIRTAGSCVI 165
PI++ LY G G++ NG +I E V RT G+ +
Sbjct: 118 EPIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRTLGAIAL 177
Query: 166 AMALVASGGADAYMEF--NVHAWDMAAGAVLVTEAGGVVIDPAGKDKN 211
+A +A G DA ++ + D+AAG V+ EAG +V D GKD
Sbjct: 178 ELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVE 225
Score = 124 bits (313), Expect = 4e-34
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
+ EE S+ T ++DP+DG+ NF++G P F +S+ +K P IY
Sbjct: 63 VNVVSEEIGRID----QGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYE 118
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
PI++ LY G G++ NG +I
Sbjct: 119 PIVERLYEGIPGKGSYLNGEKI 140
>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P,
hydrolase; HET: IPD; 2.30A {Methanocaldococcus
jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
Length = 252
Score = 219 bits (561), Expect = 7e-71
Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 30/230 (13%)
Query: 6 EMEDFVVNLAKECGELVRE--RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPD 63
+ ++ N+AKE + + K K V + D DK E + + K +
Sbjct: 2 KWDEIGKNIAKEIEKEILPYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYL--KSLN 59
Query: 64 HKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 123
+ EE + +S T +IDPIDG+ NF++G P F G + P G+ Y
Sbjct: 60 VNIVSEELG----VIDNSSEWTVVIDPIDGSFNFINGIPFFAFCFGVFKNNEPYYGLTYE 115
Query: 124 PIMDWLYTARKGCGAFHNGTRIHESETDSF--------------------VSSIRTAGSC 163
+ Y A KG GA+ NG +I + + V +R G+
Sbjct: 116 FLTKSFYEAYKGKGAYLNGRKIKVKDFNPNNIVISYYPSKKIDLEKLRNKVKRVRIFGAF 175
Query: 164 VIAMALVASGGADAYMEF--NVHAWDMAAGAVLVTEAGGVVIDPAGKDKN 211
+ M VA G DA + V A D+A+ ++ EAG ++ D G +
Sbjct: 176 GLEMCYVAKGTLDAVFDVRPKVRAVDIASSYIICKEAGALITDENGDELK 225
Score = 123 bits (310), Expect = 1e-33
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
+ EE + +S T +IDPIDG+ NF++G P F G + P G+ Y
Sbjct: 60 VNIVSEELG----VIDNSSEWTVVIDPIDGSFNFINGIPFFAFCFGVFKNNEPYYGLTYE 115
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
+ Y A KG GA+ NG +I
Sbjct: 116 FLTKSFYEAYKGKGAYLNGRKI 137
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
dimerization, hydrolase; 1.90A {Escherichia coli}
Length = 267
Score = 218 bits (557), Expect = 4e-70
Identities = 70/237 (29%), Positives = 103/237 (43%), Gaps = 36/237 (15%)
Query: 5 QEMEDFVVNLAKECGELVRE--RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYP 62
M + V A++ G L+ + + +K + D VT DK E +I I + YP
Sbjct: 2 HPMLNIAVRAARKAGNLIAKNYETPDAVEASQK-GSNDFVTNVDKAAEAVIIDTIRKSYP 60
Query: 63 DHKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIY 122
H I EES + W+IDP+DGT NF+ P+F +SI + ++ V+Y
Sbjct: 61 QHTIITEESGELEGT---DQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVY 117
Query: 123 CPIMDWLYTARKGCGAFHNGTRIHESETDSF----------------------------- 153
P+ + L+TA +G GA NG R+ S
Sbjct: 118 DPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFKAKQYATTYINIVGKLFN 177
Query: 154 -VSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKD 209
+ R GS + +A VA+G D + E + WD AAG +LV EAGG+V D G
Sbjct: 178 ECADFRATGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGELLVREAGGIVSDFTGGH 234
Score = 121 bits (305), Expect = 1e-32
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
+ I EES + W+IDP+DGT NF+ P+F +SI + ++ V+Y
Sbjct: 62 HTIITEESGELEGT---DQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYD 118
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
P+ + L+TA +G GA NG R+
Sbjct: 119 PMRNELFTATRGQGAQLNGYRL 140
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
genomics center for infectious disease, ssgcid, CAT
scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
Length = 267
Score = 212 bits (541), Expect = 1e-67
Identities = 75/231 (32%), Positives = 103/231 (44%), Gaps = 36/231 (15%)
Query: 12 VNLAKECGELVRE--RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFIGE 69
V A + G + Q +V K D V++ D++ EK + +S+ P F+ E
Sbjct: 15 VQAAMKAGRSLVRDYGEVQNLQVSLK-GPADYVSQADRKAEKIIFNELSKARPKFGFLME 73
Query: 70 ESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWL 129
ES + S +I+DP+DGT NF+HG P F +SI GVIY PI D L
Sbjct: 74 ESEEIIGE---DSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYNPINDEL 130
Query: 130 YTARKGCGAFHNGTRIHESETDSF------------------------------VSSIRT 159
+TA +G GAF N R S VS IR
Sbjct: 131 FTAERGSGAFFNDRRCRVSARRRLEDCVIATGMPHLGRPGHGTYLIELRNVMAEVSGIRR 190
Query: 160 AGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDK 210
G+ + +A VA+G D + E N+ WDMAAG ++V EAGG V D G +
Sbjct: 191 FGTAALDLAYVAAGRTDGFWEDNLQIWDMAAGILMVREAGGFVTDKEGGND 241
Score = 120 bits (303), Expect = 2e-32
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 288
+ F+ EES + S +I+DP+DGT NF+HG P F +SI GVIY
Sbjct: 68 FGFLMEESEEIIGE---DSQHRFIVDPLDGTTNFLHGIPFFAVSIALESQGKIVAGVIYN 124
Query: 289 PIMDWLYTARKGCGAFHNGTRI 310
PI D L+TA +G GAF N R
Sbjct: 125 PINDELFTAERGSGAFFNDRRC 146
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
monophosphatase; dual activity, archaeal phosphatase,
APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Length = 252
Score = 197 bits (502), Expect = 4e-62
Identities = 46/235 (19%), Positives = 82/235 (34%), Gaps = 36/235 (15%)
Query: 11 VVNLAKECGELVR------ERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDH 64
+ +++E VR ++ K V D+ E + + +
Sbjct: 6 ALRISREIAGEVRKAIASMPLRERVKDVGMG-KDGTPTKAADRVAEDAALEIL--RKERV 62
Query: 65 KFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQ---MGVI 121
+ EES G + +DP+DGT N G P + +S+ + + G +
Sbjct: 63 TVVTEESGVLG-----EGDVFVALDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFGYV 117
Query: 122 YCPIMDWLYTARKGCGAFHNGTRIHESETDSFVSS--------------IRTAGSCVIAM 167
Y Y A GA+ NG RI S+ + + +R GS +
Sbjct: 118 YNLATGDEYYADSS-GAYRNGERIEVSDAEELYCNAIIYYPDRKFPFKRMRIFGSAATEL 176
Query: 168 ALVASGGADAYMEF----NVHAWDMAAGAVLVTEAGGVVIDPAGKDKNRVEQSTI 218
A G D +++ + +D AAG + +AGG V + G+ +
Sbjct: 177 CFFADGSFDCFLDIRPGKMLRIYDAAAGVFIAEKAGGKVTELDGESLGNKKFDMQ 231
Score = 110 bits (277), Expect = 7e-29
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 229 YRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQ---MGV 285
+ EES G + +DP+DGT N G P + +S+ + + G
Sbjct: 62 VTVVTEESGVLG-----EGDVFVALDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFGY 116
Query: 286 IYCPIMDWLYTARKGCGAFHNGTRI 310
+Y Y A GA+ NG RI
Sbjct: 117 VYNLATGDEYYADSS-GAYRNGERI 140
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar
nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus
norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Length = 308
Score = 176 bits (449), Expect = 1e-53
Identities = 46/260 (17%), Positives = 83/260 (31%), Gaps = 56/260 (21%)
Query: 5 QEMEDFVVNLAKECGELVRE-RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPD 63
+ ++A++ G +VR + + +K +A DL T+ D+ V+ + + +S K+P
Sbjct: 9 MRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPK 68
Query: 64 HKFIGEESTADGIKCE-----------------------LTSNPTWIIDPIDGTMNFVHG 100
IGEE G + + +DP+DGT + G
Sbjct: 69 LTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEG 128
Query: 101 -YPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFHNGTRIHES----------- 148
N + IG + G+I P ++ G G +
Sbjct: 129 LLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAG 188
Query: 149 -------------ETDSFVSS-----IRTAGSCVIAMALVASGGADAY--MEFNVHAWDM 188
+++ + G + + G A AY WD
Sbjct: 189 KHIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDT 248
Query: 189 AAGAVLVTEAGGVVIDPAGK 208
A V++ GG + D G
Sbjct: 249 CAPEVILHAVGGKLTDIHGN 268
Score = 81.4 bits (201), Expect = 8e-18
Identities = 19/104 (18%), Positives = 29/104 (27%), Gaps = 24/104 (23%)
Query: 230 RFIGEESTADGIKCE-----------------------LTSNPTWIIDPIDGTMNFVHG- 265
IGEE G + + +DP+DGT + G
Sbjct: 70 TIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGL 129
Query: 266 YPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFHNGTR 309
N + IG + G+I P ++ G G
Sbjct: 130 LDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVL 173
>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol,
hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae}
SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
Length = 357
Score = 122 bits (307), Expect = 2e-32
Identities = 60/326 (18%), Positives = 97/326 (29%), Gaps = 126/326 (38%)
Query: 12 VNLAKECGELVRER-----NKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKF 66
++ L + + + K + VT D + +I I +PD K
Sbjct: 11 TQAVRKASLLTKRIQSEVISHKDSTTITKNDN-SPVTTGDYAAQTIIINAIKSNFPDDKV 69
Query: 67 IGEESTAD--------------------------------------------------GI 76
+GEES++ G
Sbjct: 70 VGEESSSGLSDAFVSGILNEIKANDEVYNKNYKKDDFLFTNDQFPLKSLEDVRQIIDFGN 129
Query: 77 KCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDW-------- 128
W +DPIDGT F+ G F + + +VD V Q+G I CP +
Sbjct: 130 YEGGRKGRFWCLDPIDGTKGFLRG-EQFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDL 188
Query: 129 --------LYTARKGCGAFHNGTRIHESETDSFVSSIRTAGSCVIA-------------- 166
++ A +G GAF++ + ES T V ++ +
Sbjct: 189 KGHESFGYIFRAVRGLGAFYSPSSDAESWTKIHVRHLKDTKDMITLEGVEKGHSSHDEQT 248
Query: 167 -------------------MALVASGGADAY------MEFNVHAWDMAAGAVLVTEAGGV 201
L+A G AD Y + + WD AAG V+V EAGG+
Sbjct: 249 AIKNKLNISKSLHLDSQAKYCLLALGLADVYLRLPIKLSYQEKIWDHAAGNVIVHEAGGI 308
Query: 202 VIDPAGKDKNRVEQSTIWLDGKVITY 227
D ++ + +
Sbjct: 309 HTD--------------AMEDVPLDF 320
Score = 75.8 bits (186), Expect = 1e-15
Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 21/135 (15%)
Query: 192 AVLVTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYIYRFIGEESTADGIKCELT----S 247
+ L +++ + ++ D + E I
Sbjct: 76 SGLSDAFVSGILNEIKANDEVYNKNYKKDDFLFTNDQFPLKSLEDVRQIIDFGNYEGGRK 135
Query: 248 NPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDW-------------- 293
W +DPIDGT F+ G F + + +VD V Q+G I CP +
Sbjct: 136 GRFWCLDPIDGTKGFLRG-EQFAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDLKGHESF 194
Query: 294 --LYTARKGCGAFHN 306
++ A +G GAF++
Sbjct: 195 GYIFRAVRGLGAFYS 209
>3b8b_A CYSQ, sulfite synthesis pathway protein;
3'-phosphoadenosine-5'-phosphosulfate (PAPS)
3'-phosphatase, structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 292
Score = 119 bits (301), Expect = 6e-32
Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 75/258 (29%)
Query: 11 VVNLAKECGEL---VRERNKQKKKVEEKLNAVDL--VTETDKEVEKRLIAGISEKYPDHK 65
++ A + GE + E K ++E K D +T D++ + ++A ++E
Sbjct: 27 AIDAALKAGEKILSIYEDPKSDFEIERKA---DNSPLTIADRKAHEAIVAILNE--TPFP 81
Query: 66 FIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPI 125
+ EE + WI+DP+DGT F+ F ++I V + VP MGVIY P+
Sbjct: 82 VLSEEGKHMDYAVRRGWDTLWIVDPLDGTKEFIKRNGEFTVNIALVQNAVPVMGVIYVPV 141
Query: 126 MDWLYTARKGCGAF------------------------------HNGTRI-----HES-E 149
LY A +G GA+ + H + E
Sbjct: 142 KKELYFAVEGTGAYKCSGIVGLEDEGVTLQQMIEKSERMPLADARDHFIAVASRSHLTPE 201
Query: 150 TDSFVSSIRT---------AGS----CVIAMALVASGGADAY------MEFNVHAWDMAA 190
T+++++ ++ +GS C LVA G AD Y ME WD AA
Sbjct: 202 TETYIADLKKKHGNVELISSGSSIKIC-----LVAEGKADVYPRFAPTME-----WDTAA 251
Query: 191 GAVLVTEAGGVVIDPAGK 208
G + AG V +
Sbjct: 252 GHAIARAAGMEVYQAGKE 269
Score = 78.8 bits (195), Expect = 5e-17
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 232 IGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIM 291
+ EE + WI+DP+DGT F+ F ++I V + VP MGVIY P+
Sbjct: 83 LSEEGKHMDYAVRRGWDTLWIVDPLDGTKEFIKRNGEFTVNIALVQNAVPVMGVIYVPVK 142
Query: 292 DWLYTARKGCGAF 304
LY A +G GA+
Sbjct: 143 KELYFAVEGTGAY 155
>1inp_A Inositol polyphosphate 1-phosphatase; hydrolase(phosphoric
monoester); 2.30A {Bos taurus} SCOP: e.7.1.1
Length = 400
Score = 74.3 bits (182), Expect = 4e-15
Identities = 42/274 (15%), Positives = 71/274 (25%), Gaps = 92/274 (33%)
Query: 11 VVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFIGEE 70
L + GE + R ++ L + V +K + L + + +
Sbjct: 81 SNELTNDLGEKIIMRLGPTEEETVALLSK--VLNGNKLASEALAKVVHQDVFFSDPALDS 138
Query: 71 STADGIKCELTSNPTWIIDPIDGTMNFVHGYPNF----------------CISIGYVVDK 114
+ + L W+ DPID T ++ G + I + +
Sbjct: 139 VEINIPQDILG---IWV-DPIDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTG 194
Query: 115 VPQMGVIYCPIMDWLYTARKGCGAFHNGT------------------------------- 143
VP MGVI P + R+ G + G
Sbjct: 195 VPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTRSNSEAQSQGTQNPS 254
Query: 144 ------------RIHESETDSFVSS------IRTAGS----CVIAMALVASGGADAY--- 178
+ +S R AG+ V G AD Y
Sbjct: 255 SEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAGAGYKSL-----CVILGLADIYIFS 309
Query: 179 ----MEFNVHAWDMAAGAVLVTEAGGVVIDPAGK 208
+ WD A ++ GG ++D
Sbjct: 310 EDTTFK-----WDSCAAHAILRAMGGGMVDLKEC 338
Score = 47.3 bits (112), Expect = 3e-06
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 17/101 (16%)
Query: 223 KVITYIYRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNF------------- 269
KV+ F + I W+ DPID T ++ G +
Sbjct: 123 KVVHQDVFFSDPALDSVEINIPQDILGIWV-DPIDSTYQYIKGSADITPNQGIFPSGLQC 181
Query: 270 ---CISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFHNG 307
I + + VP MGVI P + R+ G + G
Sbjct: 182 VTVLIGVYDIQTGVPLMGVINQPFVSQDLHTRRWKGQCYWG 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 3e-06
Identities = 57/358 (15%), Positives = 103/358 (28%), Gaps = 124/358 (34%)
Query: 8 EDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFI 67
D + A+ EL+R +K + LN ++ + PD +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-------------PDKDY- 230
Query: 68 GEESTADGIKCELTSNP-TWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQM--GVIYC- 123
L S P + P+ G + H Y +G+ ++ G
Sbjct: 231 ------------LLSIPISC---PLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 124 -------PI---MDW--LYT-ARKGCG-AFHNGTRIHE-----SETDSFVSSIRTAG--- 161
I W + RK F G R +E S S +
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 162 -SCVIAMALVASGGADAYME-----FNVHAWDMAA-------GA---VLVTEAG------ 199
S M L S ++ N H GA V+ +G
Sbjct: 335 PSP---M-LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV---SGPPQSLY 387
Query: 200 GVVID------PAGKDKNRVEQSTIWLDGKVITYIYRF--IGE-------ESTADGIKCE 244
G+ + P+G D++R+ S + + + RF + +D I +
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFS-----ERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 245 LTSNP-TW--------IIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDW 293
L N ++ + D DG+ + + G + +++ I + W
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGS--------DLRVLSGSISERIVDC--IIRLPVKW 490
Score = 31.2 bits (70), Expect = 0.58
Identities = 32/250 (12%), Positives = 58/250 (23%), Gaps = 95/250 (38%)
Query: 20 ELVRERNKQK---------KKVEEKLNAVDLVTETD-KEVEKRLIAGISEKYPDHKFIGE 69
++V K++ E +A+ T D K +++ I+E + F E
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 70 ESTADGIKCELTSNPTWIIDPIDGT---MNFVHGYPNFCISIGYVVDKVPQMGVIYCPIM 126
+ T T + + + +
Sbjct: 1723 KG-----LLSATQF----------TQPAL--------TLMEK-----------AAFEDLK 1748
Query: 127 DWLYTARKGCGAFHNGTRIHESETDSFVSSIRTAG------SCVIAMALVASGGADAYME 180
G D+ AG + AL + M
Sbjct: 1749 SK--------GLI---------PADATF-----AGHSLGEYA-----ALASLADV---MS 1778
Query: 181 FN-----VHA-WDMAAGAVLVTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYIYRFIGE 234
V AV E G + RV S + + Y+ +G+
Sbjct: 1779 IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS---FSQEALQYVVERVGK 1835
Query: 235 ESTADGIKCE 244
+ G E
Sbjct: 1836 RT---GWLVE 1842
Score = 28.1 bits (62), Expect = 4.7
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 26/75 (34%)
Query: 4 TQEMEDFVV-NLAKECGELVRE------RNKQ------KKKVEE--------KLNAVDL- 41
+QE +VV + K G LV E N+Q + ++ KL +D+
Sbjct: 1822 SQEALQYVVERVGKRTGWLV-EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 42 ---VTETDKEVEKRL 53
+ + +EVE L
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 8e-04
Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 81/211 (38%)
Query: 7 MEDFVVNLAKECGELVRERNKQKKKVEEKLNAV-------DLVTETDKEVEKRLIAGISE 59
+ FV N +C K V++ ++ ++ D +
Sbjct: 26 EDAFVDNF--DC-----------KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 60 KYPD---HKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVP 116
+ KF+ E L N +++ PI + P
Sbjct: 73 SKQEEMVQKFVEEV---------LRINYKFLMSPIK------------------TEQRQP 105
Query: 117 QMG-VIYCPIMDWLYTARKGCGAF--HNGTRIHESETDSFVSSIRTA------------- 160
M +Y D LY + F +N +R+ +R A
Sbjct: 106 SMMTRMYIEQRDRLYNDNQ---VFAKYNVSRLQP------YLKLRQALLELRPAKNVLID 156
Query: 161 -----GSCVIAMALVASGGADAYMEFNVHAW 186
G +A+ + S M+F + W
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIF-W 186
Score = 28.7 bits (63), Expect = 3.2
Identities = 62/372 (16%), Positives = 99/372 (26%), Gaps = 117/372 (31%)
Query: 2 LPTQEMEDFVVNLAKE-----CGELVRERNKQKKKVEEKLNAVD-----LVTETDKEVEK 51
L ++ + L K C L+ N Q K NA + L+T K+V
Sbjct: 225 LRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKA---WNAFNLSCKILLTTRFKQVTD 279
Query: 52 RLIAGISEKYP-DHKFIG--EESTAD------GIKCE------LTSNP-------TWIID 89
L A + DH + + + + LT+NP I D
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 90 PIDGTMNFVHGYPNFCISIGYVVDKVPQM-----GVIYCPIMDWLYTARKGCGAFHNGTR 144
+ N+ H DK+ + V+ ++ F
Sbjct: 340 GLATWDNWKH----------VNCDKLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAH 386
Query: 145 I------------HESETDSFVSSIRTAGSCVIAMALVASGGA-------DAYMEFNVHA 185
I +S+ V+ + LV Y+E V
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYS-------LVEKQPKESTISIPSIYLELKVKL 439
Query: 186 WDMAAG-AVLVTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYIYRFIG---------EE 235
+ A +V P D + + +LD Y Y IG E
Sbjct: 440 ENEYALHRSIVDH----YNIPKTFDSD--DLIPPYLDQ----YFYSHIGHHLKNIEHPER 489
Query: 236 STA------D----GIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGV 285
T D K S I T+ + Y Y+ D P+
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP------YICDNDPKYER 543
Query: 286 IYCPIMDWLYTA 297
+ I+D+L
Sbjct: 544 LVNAILDFLPKI 555
Score = 27.9 bits (61), Expect = 5.8
Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 38/134 (28%)
Query: 192 AVLVTEAGGVVIDPAGKDKNRVEQS--TIW-LDGKVITYIYRFIGEESTADGIKCELTSN 248
++L E ID K+ V + W L K + +F+ E L N
Sbjct: 44 SILSKE----EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV---------LRIN 90
Query: 249 PTWIIDPI-----DGTMNFVHGYPNFCISIGY-VVDKVPQMGV----IYCPIMDWLYTAR 298
+++ PI +M Y Y + V Y + L R
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRM-Y-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 299 ----------KGCG 302
G G
Sbjct: 149 PAKNVLIDGVLGSG 162
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 35.2 bits (80), Expect = 0.012
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRL 53
+E+ED +L E +V + K+K +E + E +E + L
Sbjct: 86 KEVEDLTASLFDEANNMVADARKEKYAIEILNKRLT---EQLREKDTLL 131
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 33.7 bits (76), Expect = 0.025
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRL 53
+E+ED +L E LV + +K +E +TE +E + L
Sbjct: 74 KEVEDLTASLFDEANNLVADARMEKYAIEIL---NKRLTEQLREKDMLL 119
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization
domain TIN2, ADP-ribosylation, alternative splicing,
cell cycle, cell division; 2.00A {Homo sapiens} SCOP:
a.146.1.1 PDB: 3l82_A 1h6o_A
Length = 211
Score = 30.9 bits (69), Expect = 0.39
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 13 NLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFI 67
NL K V N K+ EE + + + +L+ IS+K H F
Sbjct: 117 NLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding,
DNA binding protein; NMR {Saccharomyces cerevisiae}
Length = 116
Score = 29.9 bits (67), Expect = 0.41
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 261 NFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFH--NGTRIWSD 313
F+ C + +P++G + LY + G T+ WS
Sbjct: 22 LFMKSLIENCKKRNMPLQSIPEIGNRKINLFY-LYMLVQKFGGADQVTRTQQWSM 75
Score = 28.0 bits (62), Expect = 1.9
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 96 NFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFHN 141
F+ C + +P++G + LY + G
Sbjct: 22 LFMKSLIENCKKRNMPLQSIPEIGNRKINLFY-LYMLVQKFGGADQ 66
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.60
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 13/48 (27%)
Query: 14 LAKECGELVRE-RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEK 60
L +E E +R+ R +Q+K+++E D K + EK
Sbjct: 80 LTQE-PESIRKWREEQRKRLQEL----------DAA-SKVMEQEWREK 115
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 30.8 bits (70), Expect = 0.64
Identities = 9/65 (13%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 39 VDLVTETDKEVEKRLIAGISEKYPDHKFIGEESTADGIKCELTSNPTWIID-PIDGTMNF 97
D+ + ++ KYP+ ++ E + + I+ + T + D + +
Sbjct: 171 CDVAPLVPLDFWLEARKQVNAKYPETLWLAESAGSGFIEELRSQGYTGLSDSELYQAFDM 230
Query: 98 VHGYP 102
+ Y
Sbjct: 231 TYDYD 235
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2
dimerization domain TIN2 peptide, alternative splicing,
cell cycle, chromosomal protein; 2.15A {Homo sapiens}
SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Length = 235
Score = 29.8 bits (66), Expect = 0.98
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 4 TQEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPD 63
T+ + + L KE ++ +NK+ +K + L T +++ L+ I EK
Sbjct: 105 TEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLA 164
Query: 64 HKFI 67
H I
Sbjct: 165 HPVI 168
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 29.7 bits (66), Expect = 1.2
Identities = 10/47 (21%), Positives = 24/47 (51%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEK 51
+++++ + + K E V+ K K++V L AV + + ++K
Sbjct: 94 RKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQK 140
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 27.5 bits (61), Expect = 7.2
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 39 VDLVTETDKEVEKRLIAGISEKYPDHKFIGEESTADGIKCEL----TSNPTWIIDPIDGT 94
+D +D + +YP +G+E + +N +
Sbjct: 310 IDTYGYSDGAFLTEYTRRLMAEYPRLNMVGQEWSTRVPVVARWQRGKANFDGYTSHLPSL 369
Query: 95 MNF 97
M+F
Sbjct: 370 MDF 372
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 27.5 bits (61), Expect = 7.3
Identities = 6/47 (12%), Positives = 21/47 (44%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEK 51
EME + + +L E+ K ++++ + ++ ++++
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.432
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,253,644
Number of extensions: 327522
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 72
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)