RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10017
(324 letters)
>d2hhma_ e.7.1.1 (A:) Inositol monophosphatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 272
Score = 139 bits (351), Expect = 4e-40
Identities = 107/239 (44%), Positives = 139/239 (58%), Gaps = 32/239 (13%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDH 64
QE D+ V LA++ GE+V E K + V K + VDLVT TD++VEK LI+ I EKYP H
Sbjct: 2 QECMDYAVTLARQAGEVVCEAIKNEMNVMLKSSPVDLVTATDQKVEKMLISSIKEKYPSH 61
Query: 65 KFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCP 124
FIGEES A G K LT NPTWIIDPIDGT NFVH +P +SIG+ V+K + GV+Y
Sbjct: 62 SFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIEFGVVYSC 121
Query: 125 IMDWLYTARKGCGAFHNGTRIHESETDSF------------------------------- 153
+ +YTARKG GAF NG ++ S+ +
Sbjct: 122 VEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLLVTELGSSRTPETVRMVLSNMEKLFCI 181
Query: 154 -VSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDKN 211
V IR+ G+ + M LVA+GGADAY E +H WD+A ++VTEAGGV++D G +
Sbjct: 182 PVHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDVAGAGIIVTEAGGVLMDVTGGPFD 240
Score = 51.9 bits (123), Expect = 2e-08
Identities = 48/94 (51%), Positives = 59/94 (62%)
Query: 223 KVITYIYRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQ 282
K + FIGEES A G K LT NPTWIIDPIDGT NFVH +P +SIG+ V+K +
Sbjct: 55 KEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSIGFAVNKKIE 114
Query: 283 MGVIYCPIMDWLYTARKGCGAFHNGTRIWSDSNT 316
GV+Y + +YTARKG GAF NG ++
Sbjct: 115 FGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQE 148
>d1jp4a_ e.7.1.1 (A:) PIPase {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 304
Score = 125 bits (314), Expect = 2e-34
Identities = 45/260 (17%), Positives = 83/260 (31%), Gaps = 56/260 (21%)
Query: 6 EMEDFVVNLAKECGELVRE-RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDH 64
+ ++A++ G +VR + + +K +A DL T+ D+ V+ + + +S K+P
Sbjct: 6 RLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKL 65
Query: 65 KFIGEESTADGIKCELT-----------------------SNPTWIIDPIDGTMNFVHG- 100
IGEE G + + +DP+DGT + G
Sbjct: 66 TIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGL 125
Query: 101 YPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKG------------------------- 135
N + IG + G+I P ++
Sbjct: 126 LDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGK 185
Query: 136 ----CGAFHNGTRIHESETDSFVSSIRTAGSCVIAMALVASGGADAYMEF--NVHAWDMA 189
H+ + + ++ G + + G A AY+ WD
Sbjct: 186 HIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTC 245
Query: 190 AGAVLVTEAGGVVIDPAGKD 209
A V++ GG + D G
Sbjct: 246 APEVILHAVGGKLTDIHGNP 265
Score = 55.1 bits (131), Expect = 3e-09
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 247 SNPTWIIDPIDGTMNFVHG-YPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCGAFH 305
+ +DP+DGT + G N + IG + G+I P ++ G
Sbjct: 106 EDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTI 165
Query: 306 NG 307
G
Sbjct: 166 WG 167
>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP
phosphatase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 354
Score = 108 bits (270), Expect = 9e-28
Identities = 62/324 (19%), Positives = 94/324 (29%), Gaps = 112/324 (34%)
Query: 12 VNLAKECGELVRERNKQ-----KKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKF 66
++ L + + K + VT D + +I I +PD K
Sbjct: 10 TQAVRKASLLTKRIQSEVISHKDSTTITKNDN-SPVTTGDYAAQTIIINAIKSNFPDDKV 68
Query: 67 IGEESTAD--------------------------------------------------GI 76
+GEES++ G
Sbjct: 69 VGEESSSGLSDAFVSGILNEIKANDEVYNKNYKKDDFLFTNDQFPLKSLEDVRQIIDFGN 128
Query: 77 KCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMD--------- 127
W +DPIDGT F+ G F + + +VD V Q+G I CP +
Sbjct: 129 YEGGRKGRFWCLDPIDGTKGFLRGEQ-FAVCLALIVDGVVQLGCIGCPNLVLSSYGAQDL 187
Query: 128 -------WLYTARKGCGAFHNGTRIHESETDSFVSSIR---------------------- 158
+++ A +G GAF++ + ES T V ++
Sbjct: 188 KGHESFGYIFRAVRGLGAFYSPSSDAESWTKIHVRHLKDTKDMITLEGVEKGHSSHDEQT 247
Query: 159 -----------TAGSCVIAMALVASGGADAY------MEFNVHAWDMAAGAVLVTEAGGV 201
L+A G AD Y + + WD AAG V+V EAGG+
Sbjct: 248 AIKNKLNISKSLHLDSQAKYCLLALGLADVYLRLPIKLSYQEKIWDHAAGNVIVHEAGGI 307
Query: 202 VIDPAGKDKNRVEQSTIWLDGKVI 225
D VI
Sbjct: 308 HTDAMEDVPLDFGNGRTLATKGVI 331
Score = 58.2 bits (139), Expect = 3e-10
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 235 ESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWL 294
+ G W +DPIDGT F+ G F + + +VD V Q+G I CP +
Sbjct: 122 QIIDFGNYEGGRKGRFWCLDPIDGTKGFLRGEQ-FAVCLALIVDGVVQLGCIGCPNLVLS 180
Query: 295 YTARKGCGAFHNGTRIWSDSN 315
+ + I+
Sbjct: 181 SYGAQDLKGHESFGYIFRAVR 201
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
taurus), brain [TaxId: 9913]}
Length = 400
Score = 109 bits (272), Expect = 1e-27
Identities = 38/266 (14%), Positives = 64/266 (24%), Gaps = 75/266 (28%)
Query: 14 LAKECGELVRERNKQ-----KKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFIG 68
+E EL + ++ EE + + V +K + L + +
Sbjct: 77 FGEESNELTNDLGEKIIMRLGPTEEETVALLSKVLNGNKLASEALAKVVHQDVFFSDPAL 136
Query: 69 EESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIG----------------YVV 112
+ + +DPID T ++ G + + G +
Sbjct: 137 DSVEINIP----QDILGIWVDPIDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQ 192
Query: 113 DKVPQMGVIYCPIMD----------WLYTARKGCGAFHNGTRIHESETDS---------- 152
VP MGVI P + Y G + S +
Sbjct: 193 TGVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLGTNIHSLLPPVSTRSNSEAQSQGTQN 252
Query: 153 ----------------------------FVSSIRTAGSCVIAMALVASGGADAYMEF--N 182
I A V G AD Y+
Sbjct: 253 PSSEGSCRFSVVISTSEKETIKGALSHVCGERIFRAAGAGYKSLCVILGLADIYIFSEDT 312
Query: 183 VHAWDMAAGAVLVTEAGGVVIDPAGK 208
WD A ++ GG ++D
Sbjct: 313 TFKWDSCAAHAILRAMGGGMVDLKEC 338
Score = 70.4 bits (171), Expect = 3e-14
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 16/80 (20%)
Query: 246 TSNPTWIIDPIDGTMNFVHGYPNFCISIG----------------YVVDKVPQMGVIYCP 289
+DPID T ++ G + + G + VP MGVI P
Sbjct: 145 QDILGIWVDPIDSTYQYIKGSADITPNQGIFPSGLQCVTVLIGVYDIQTGVPLMGVINQP 204
Query: 290 IMDWLYTARKGCGAFHNGTR 309
+ R+ G + G
Sbjct: 205 FVSQDLHTRRWKGQCYWGLS 224
Score = 50.4 bits (119), Expect = 1e-07
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKK----KVEEKL-------NAVDLVTETDKEVEKRL 53
++ ++ ++++ + R +Q+ +EEK AVD T D V++ +
Sbjct: 2 SDILQELLRVSEKAANIARACRQQETLFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVI 61
Query: 54 IAGISEKYPD--HKFIGEESTAD 74
+ K+P K GEES
Sbjct: 62 KENMENKFPGLGKKIFGEESNEL 84
>d1vdwa_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 253
Score = 90.5 bits (223), Expect = 9e-22
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 27/226 (11%)
Query: 5 QEMEDFVVNLAKECGELVRERNKQKKKVE--EKLNAVDLVTETDKEVEKRLIAGISEKYP 62
+ +++ ++ + K E + D DK E +I+ +
Sbjct: 3 KTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKD--L 60
Query: 63 DHKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIY 122
+ E + + + S+ T ++DP+DG+ NF++G P F +S+ +K P IY
Sbjct: 61 GVNVVSE----EIGRIDQGSDYTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIY 116
Query: 123 CPIMDWLYTARKGCGAFHNGTRIHESETDSF-----------------VSSIRTAGSCVI 165
PI++ LY G G++ NG +I E V RT G+ +
Sbjct: 117 EPIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISFYTKGKGTKIIDKVKRTRTLGAIAL 176
Query: 166 AMALVASGGADAYMEF--NVHAWDMAAGAVLVTEAGGVVIDPAGKD 209
+A +A G DA ++ + D+AAG V+ EAG +V D GKD
Sbjct: 177 ELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKD 222
>d1xi6a_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 249
Score = 85.5 bits (210), Expect = 5e-20
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 28/227 (12%)
Query: 5 QEMEDFVVNLAKECGELVRE--RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYP 62
+ + +++ + + N K+ + + D DK E +++ I+E
Sbjct: 3 KFWREVAIDIISDFETTIMPFFGNPDGGKLVKISPSGDETKLVDKLAEDLILSRITELGV 62
Query: 63 DHKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIY 122
+ + + S T I+DP+DG+ NF+ G P F +S+ P +IY
Sbjct: 63 NVVSE------EVGVIDNESEYTVIVDPLDGSYNFIAGIPFFALSLAVFKKDKPIYAIIY 116
Query: 123 CPIMDWLYTARKGCGAFHNGTRIHESETD------------------SFVSSIRTAGSCV 164
P+ + + G GAF NG RI +T V RT G+
Sbjct: 117 EPMTERFFEGIPGEGAFLNGKRIKVRKTPDEKPSISFYSRGKGHEIVKHVKRTRTLGAIA 176
Query: 165 IAMALVASGGADAYMEF--NVHAWDMAAGAVLVTEAGGVVIDPAGKD 209
+ +A +A G D ++ V D+AAG ++ EAG ++ D AGKD
Sbjct: 177 LELAYLAMGALDGVVDVRKYVRPTDIAAGTIIAKEAGALIKDSAGKD 223
>d1g0ha_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 252
Score = 75.2 bits (183), Expect = 2e-16
Identities = 57/228 (25%), Positives = 93/228 (40%), Gaps = 30/228 (13%)
Query: 6 EMEDFVVNLAKECGELVRE--RNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPD 63
+ ++ N+AKE + + K K V + D DK E + + K +
Sbjct: 2 KWDEIGKNIAKEIEKEILPYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYL--KSLN 59
Query: 64 HKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYC 123
+ E + + +S T +IDPIDG+ NF++G P F G + P G+ Y
Sbjct: 60 VNIVSE----ELGVIDNSSEWTVVIDPIDGSFNFINGIPFFAFCFGVFKNNEPYYGLTYE 115
Query: 124 PIMDWLYTARKGCGAFHNGTRIHESETDS--------------------FVSSIRTAGSC 163
+ Y A KG GA+ NG +I + + V +R G+
Sbjct: 116 FLTKSFYEAYKGKGAYLNGRKIKVKDFNPNNIVISYYPSKKIDLEKLRNKVKRVRIFGAF 175
Query: 164 VIAMALVASGGADAYMEF--NVHAWDMAAGAVLVTEAGGVVIDPAGKD 209
+ M VA G DA + V A D+A+ ++ EAG ++ D G +
Sbjct: 176 GLEMCYVAKGTLDAVFDVRPKVRAVDIASSYIICKEAGALITDENGDE 223
>d1lbva_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 74.7 bits (182), Expect = 3e-16
Identities = 33/227 (14%), Positives = 71/227 (31%), Gaps = 28/227 (12%)
Query: 4 TQEMEDFVVNLAKECGELVRERNKQKKKVEEKLNA-VDLVTETDKEVEKRLIAGISEKYP 62
++ +A E + + +++ + + D+ E + + +
Sbjct: 3 ERDALRISREIAGEVRKAIASMPLRERVKDVGMGKDGTPTKAADRVAEDAALEIL--RKE 60
Query: 63 DHKFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIY 122
+ EES G + +DP+DGT N G P + +S+ + +
Sbjct: 61 RVTVVTEESGVLGE-----GDVFVALDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFG 115
Query: 123 CPIMDWLYTARKGCGAF----------------HNGTRIHESETDSFVSSIRTAGSCVIA 166
+ + I+ + +R GS
Sbjct: 116 YVYNLATGDEYYADSSGAYRNGERIEVSDAEELYCNAIIYYPDRKFPFKRMRIFGSAATE 175
Query: 167 MALVASGGADAYMEF----NVHAWDMAAGAVLVTEAGGVVIDPAGKD 209
+ A G D +++ + +D AAG + +AGG V + G+
Sbjct: 176 LCFFADGSFDCFLDIRPGKMLRIYDAAAGVFIAEKAGGKVTELDGES 222
Score = 30.4 bits (67), Expect = 0.25
Identities = 9/49 (18%), Positives = 17/49 (34%)
Query: 247 SNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLY 295
+ +DP+DGT N G P + +S+ + +
Sbjct: 75 GDVFVALDPLDGTFNATRGIPVYSVSLCFSYSDKLKDAFFGYVYNLATG 123
>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 204
Score = 28.6 bits (64), Expect = 0.89
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 13 NLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFI 67
NL K V N K+ EE + + + +L+ IS+K H F
Sbjct: 113 NLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 167
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes
faecalis [TaxId: 511]}
Length = 133
Score = 27.7 bits (61), Expect = 1.0
Identities = 8/44 (18%), Positives = 12/44 (27%)
Query: 93 GTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGC 136
G + + Y C +G CP + A K
Sbjct: 48 GPDDDIVAYSVLCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAG 91
Score = 27.7 bits (61), Expect = 1.0
Identities = 8/44 (18%), Positives = 12/44 (27%)
Query: 258 GTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGC 301
G + + Y C +G CP + A K
Sbjct: 48 GPDDDIVAYSVLCTHMGCPTSYDSSSKTFSCPCHFTEFDAEKAG 91
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 27.1 bits (60), Expect = 2.1
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 13 NLAKECGELVRERNKQKKKVEEKLNAVDLVTETDKEVEKRLIAGISEKYPDHKFI 67
L KE ++ +NK+ +K + L T +++ L+ I EK H I
Sbjct: 113 KLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVI 167
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 27.5 bits (60), Expect = 2.2
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 11/78 (14%)
Query: 114 KVPQMGVIYCPIMDWLYTARKGCGAFHNGTRIHESETDSFVSSIRTAGSCVIAMALVASG 173
+ Q+ + + + F T I ++ A A+AL
Sbjct: 204 RQRQISFFNSWGISTAASLAEIRSEFPASTMIASG-------GLQDALDVAKAIAL---- 252
Query: 174 GADAYMEFNVHAWDMAAG 191
GA +
Sbjct: 253 GASCTGMAGHFLKALTDS 270
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 27.4 bits (60), Expect = 2.4
Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 127 DWLYTARKGCGAFHNGTRIHESETDSFVSSIRTAGSCVIAMALVASGGADAYMEFNVHAW 186
+++ + ++ + T ++ + + +F+
Sbjct: 30 NYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVID 89
Query: 187 DMAAG-AVLVTEAGGVVIDP 205
++++ AVL T+ ++ P
Sbjct: 90 ELSSCHAVLSTQLADAMMFP 109
>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia
coli [TaxId: 562]}
Length = 473
Score = 26.8 bits (58), Expect = 3.7
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 138 AFHNGTRIHESET-DSFVSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVT 196
AF+ G I + D+++++ S + L AD V + V
Sbjct: 79 AFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILAT---ADWLSRNAVASGKAPLTMKQVL 135
Query: 197 EAGGVVIDPAGKDKNRVEQSTIWLDGKVITYI 228
A + G + + LD ++ +
Sbjct: 136 TAMIKAHEIQGCIALENSFNRVGLDHVLLVKV 167
>d2nsfa1 a.213.1.4 (A:1-160) Micothiol-dependent maleylpyruvate
isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Length = 160
Score = 26.3 bits (57), Expect = 4.0
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 179 MEFNVHAWDMAAGA 192
E +HA D+ A A
Sbjct: 143 REVWIHAVDLGAVA 156
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 26.8 bits (58), Expect = 4.4
Identities = 10/46 (21%), Positives = 12/46 (26%), Gaps = 4/46 (8%)
Query: 153 FVSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEA 198
+ T A+AL GAD GA V
Sbjct: 239 ASGGVYTGTDGAKALAL----GADLLAVARPLLRPALEGAERVAAW 280
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 58
Score = 24.3 bits (53), Expect = 4.8
Identities = 7/41 (17%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 188 MAAGAVLVTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYI 228
+ AV + G +V + + ++ I+ + +++T+I
Sbjct: 23 IRQSAVKIN--GEIVKSGSVQIS---QEDEIYFEDELLTWI 58
>d1chda_ c.40.1.1 (A:) Methylesterase CheB, C-terminal domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 26.0 bits (57), Expect = 6.0
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 21/101 (20%)
Query: 115 VPQMGVIYCPIMDWLYTARKGCGAFH-------NGTRIHESETDSFVSSIRTAGSCVIAM 167
G Y D + + R S F S + AG + +
Sbjct: 68 RVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPVNRHRPSVDVLFHSVAKHAGRNAVGV 127
Query: 168 ALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVI--DPA 206
L +G + D AAG + + +AG I + A
Sbjct: 128 IL--TGMGN----------DGAAGMLAMYQAGAWTIAQNEA 156
>d1sw5a_ c.94.1.1 (A:) Osmoprotection protein ProX {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 270
Score = 26.0 bits (56), Expect = 7.5
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 6/118 (5%)
Query: 154 VSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVLVTEAGGVVIDPAGKDKNRV 213
G ++ + Y+E+ A+ V++ + + D + V
Sbjct: 31 AEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAY-----NVILRKQPPELWDQ-QYIFDEV 84
Query: 214 EQSTIWLDGKVITYIYRFIGEESTADGIKCELTSNPTWIIDPIDGTMNFVHGYPNFCI 271
++ + DG V+ F + + A + I D + V G
Sbjct: 85 KKGLLEADGVVVAAKLGFRDDYALAVRADWAEENGVEKISDLAEFADQLVFGSDPEFA 142
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 148
Score = 25.1 bits (55), Expect = 8.2
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 15 AKECGELVRERNKQKKKVEEK 35
A+EC L ER ++ +++++K
Sbjct: 1 AQECQNLEVERQRRLERIKQK 21
>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
formigenes [TaxId: 847]}
Length = 427
Score = 25.7 bits (55), Expect = 9.6
Identities = 32/311 (10%), Positives = 71/311 (22%), Gaps = 38/311 (12%)
Query: 26 NKQKKKVEEKLNAVDLVTETDKEVEKRLIA-----------GISEKYPDHKFIGEESTAD 74
N K+ + +D+ T KE+ +++I G ++ +E
Sbjct: 63 NCNKRSI-----ELDMKTPEGKELLEQMIKKADVMVENFGPGALDRMGFTWEYIQELNPR 117
Query: 75 GIKCELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARK 134
I + + V + D P + + +
Sbjct: 118 VILASVKGYAEGHANEHLKVYENVAQCSGGAAATTGFWDGPP---TVSGAALGDSNSGMH 174
Query: 135 GCGAFHNGTRIHESETDSFVSSIRTAGSCVIAMALVASGGADAYMEFNVHAWDMAAGAVL 194
I ++ + + + + + + A
Sbjct: 175 LMIGILAALEIRHKTGRGQKVAVAMQDAVLNLVRIKLRDQQRLERTGILAEYPQAQPNFA 234
Query: 195 VTEAGGVVIDPAGKDKNRVEQSTIWLDGKVITYIYRFIGEESTADGI------------K 242
G + R + G ++ + G E+ AD
Sbjct: 235 FDRDGNPLSFDNITSVPRGGNA---GGGGQPGWMLKCKGWETDADSYVYFTIAANMWPQI 291
Query: 243 CELTSNPTWIIDPIDGTMNFVHGYPNFCISIGYVVDKVPQMGVIYCPIMDWLYTARKGCG 302
C++ P W DP T + + + +W CG
Sbjct: 292 CDMIDKPEWKDDPAYNTFEGRVDKLMDI----FSFIETKFADKDKFEVTEWAAQYGIPCG 347
Query: 303 AFHNGTRIWSD 313
+ + D
Sbjct: 348 PVMSMKELAHD 358
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.432
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,304,175
Number of extensions: 63222
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 42
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)